Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152410 | XP_013449158.1 | 94.843 | 446 | 21 | 1 | 1 | 444 | 1 | 446 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152410 | sp|P48621|FAD3C_SOYBN | 78.728 | 456 | 82 | 4 | 1 | 444 | 1 | 453 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152410 | A0A072UBF9 | 94.843 | 446 | 21 | 1 | 1 | 444 | 1 | 446 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa1152410 | 0.813257 | 2.805347e-51 | -8.615850e-47 |
| Msa0030480 | Msa1152410 | 0.804519 | 2.077731e-49 | -8.615850e-47 |
| Msa0051050 | Msa1152410 | 0.806036 | 9.998974e-50 | -8.615850e-47 |
| Msa0060070 | Msa1152410 | 0.814458 | 1.525109e-51 | -8.615850e-47 |
| Msa0061500 | Msa1152410 | 0.807850 | 4.132742e-50 | -8.615850e-47 |
| Msa0064140 | Msa1152410 | 0.802961 | 4.376525e-49 | -8.615850e-47 |
| Msa0071480 | Msa1152410 | 0.813365 | 2.655887e-51 | -8.615850e-47 |
| Msa0081940 | Msa1152410 | 0.807740 | 4.361900e-50 | -8.615850e-47 |
| Msa0082050 | Msa1152410 | 0.805890 | 1.072900e-49 | -8.615850e-47 |
| Msa0092410 | Msa1152410 | 0.820702 | 5.965304e-53 | -8.615850e-47 |
| Msa0101240 | Msa1152410 | 0.830288 | 3.195141e-55 | -8.615850e-47 |
| Msa0106620 | Msa1152410 | 0.804364 | 2.238714e-49 | -8.615850e-47 |
| Msa0119440 | Msa1152410 | 0.838435 | 2.880146e-57 | -8.615850e-47 |
| Msa0614380 | Msa1152410 | 0.826350 | 2.846703e-54 | -8.615850e-47 |
| Msa0662940 | Msa1152410 | 0.800313 | 1.528129e-48 | -8.615850e-47 |
| Msa0714990 | Msa1152410 | 0.805363 | 1.384116e-49 | -8.615850e-47 |
| Msa0715420 | Msa1152410 | 0.808196 | 3.488063e-50 | -8.615850e-47 |
| Msa0748660 | Msa1152410 | 0.800071 | 1.711650e-48 | -8.615850e-47 |
| Msa0750810 | Msa1152410 | 0.808882 | 2.489504e-50 | -8.615850e-47 |
| Msa0757020 | Msa1152410 | 0.801912 | 7.197630e-49 | -8.615850e-47 |
| Msa0758250 | Msa1152410 | 0.845086 | 5.056524e-59 | -8.615850e-47 |
| Msa0769720 | Msa1152410 | 0.803920 | 2.768957e-49 | -8.615850e-47 |
| Msa0779260 | Msa1152410 | 0.809230 | 2.096996e-50 | -8.615850e-47 |
| Msa0794210 | Msa1152410 | 0.813301 | 2.743237e-51 | -8.615850e-47 |
| Msa0836650 | Msa1152410 | 0.810711 | 1.006426e-50 | -8.615850e-47 |
| Msa0128430 | Msa1152410 | 0.815373 | 9.559755e-52 | -8.615850e-47 |
| Msa0136630 | Msa1152410 | 0.833670 | 4.666364e-56 | -8.615850e-47 |
| Msa0151220 | Msa1152410 | 0.816035 | 6.806210e-52 | -8.615850e-47 |
| Msa0152560 | Msa1152410 | 0.810167 | 1.318854e-50 | -8.615850e-47 |
| Msa0162690 | Msa1152410 | 0.839640 | 1.404041e-57 | -8.615850e-47 |
| Msa0179100 | Msa1152410 | 0.814165 | 1.770387e-51 | -8.615850e-47 |
| Msa0187310 | Msa1152410 | 0.821146 | 4.714842e-53 | -8.615850e-47 |
| Msa0213430 | Msa1152410 | 0.805457 | 1.322830e-49 | -8.615850e-47 |
| Msa0364790 | Msa1152410 | 0.812029 | 5.206991e-51 | -8.615850e-47 |
| Msa0380600 | Msa1152410 | 0.846566 | 2.003787e-59 | -8.615850e-47 |
| Msa0403490 | Msa1152410 | 0.836394 | 9.599611e-57 | -8.615850e-47 |
| Msa0408340 | Msa1152410 | 0.855659 | 5.437661e-62 | -8.615850e-47 |
| Msa0418400 | Msa1152410 | 0.805155 | 1.530435e-49 | -8.615850e-47 |
| Msa0430240 | Msa1152410 | 0.848831 | 4.768297e-60 | -8.615850e-47 |
| Msa0437070 | Msa1152410 | 0.805749 | 1.148556e-49 | -8.615850e-47 |
| Msa0472770 | Msa1152410 | 0.831522 | 1.591264e-55 | -8.615850e-47 |
| Msa1024690 | Msa1152410 | 0.927057 | 1.996294e-91 | -8.615850e-47 |
| Msa1034700 | Msa1152410 | 0.814126 | 1.805872e-51 | -8.615850e-47 |
| Msa1043120 | Msa1152410 | 0.864131 | 1.516140e-64 | -8.615850e-47 |
| Msa1043330 | Msa1152410 | 0.806221 | 9.140795e-50 | -8.615850e-47 |
| Msa1063370 | Msa1152410 | 0.942141 | 1.215432e-101 | -8.615850e-47 |
| Msa1063410 | Msa1152410 | 0.921714 | 2.508934e-88 | -8.615850e-47 |
| Msa1077060 | Msa1152410 | 0.819265 | 1.271764e-52 | -8.615850e-47 |
| Msa0240270 | Msa1152410 | 0.808246 | 3.404071e-50 | -8.615850e-47 |
| Msa0259440 | Msa1152410 | 0.838162 | 3.387326e-57 | -8.615850e-47 |
| Msa0259580 | Msa1152410 | 0.828905 | 6.931589e-55 | -8.615850e-47 |
| Msa0269560 | Msa1152410 | 0.820553 | 6.453125e-53 | -8.615850e-47 |
| Msa0282720 | Msa1152410 | 0.803714 | 3.055105e-49 | -8.615850e-47 |
| Msa0305620 | Msa1152410 | 0.849523 | 3.061079e-60 | -8.615850e-47 |
| Msa1108720 | Msa1152410 | 0.968660 | 5.396073e-129 | -8.615850e-47 |
| Msa1122790 | Msa1152410 | 0.823881 | 1.090898e-53 | -8.615850e-47 |
| Msa1123720 | Msa1152410 | 0.800690 | 1.280522e-48 | -8.615850e-47 |
| Msa1152410 | Msa1156820 | 0.804351 | 2.252282e-49 | -8.615850e-47 |
| Msa1152410 | Msa1163880 | 0.820210 | 7.736744e-53 | -8.615850e-47 |
| Msa1152410 | Msa1209190 | 0.828266 | 9.889003e-55 | -8.615850e-47 |
| Msa1152410 | Msa1209860 | 0.819607 | 1.062774e-52 | -8.615850e-47 |
| Msa1152410 | Msa1214170 | 0.846619 | 1.938664e-59 | -8.615850e-47 |
| Msa1152410 | Msa1260060 | 0.808459 | 3.065047e-50 | -8.615850e-47 |
| Msa1152410 | Msa1260680 | 0.806122 | 9.586674e-50 | -8.615850e-47 |
| Msa1152410 | Msa1280170 | 0.811838 | 5.730145e-51 | -8.615850e-47 |
| Msa1152410 | Msa1285200 | 0.834271 | 3.300510e-56 | -8.615850e-47 |
| Msa1152410 | Msa1360020 | 0.843303 | 1.522757e-58 | -8.615850e-47 |
| Msa1152410 | Msa1360420 | 0.837794 | 4.212902e-57 | -8.615850e-47 |
| Msa1152410 | Msa1366550 | 0.800816 | 1.206664e-48 | -8.615850e-47 |
| Msa1152410 | Msa1367530 | 0.807052 | 6.101105e-50 | -8.615850e-47 |
| Msa1152410 | Msa1421900 | 0.806798 | 6.905704e-50 | -8.615850e-47 |
| Msa1152410 | Msa1424630 | 0.807437 | 5.057883e-50 | -8.615850e-47 |
| Msa1152410 | Msa1430550 | 0.820776 | 5.737158e-53 | -8.615850e-47 |
| Msa1152410 | Msa1463030 | 0.804903 | 1.727873e-49 | -8.615850e-47 |
| Msa0501410 | Msa1152410 | 0.809386 | 1.941368e-50 | -8.615850e-47 |
| Msa0524330 | Msa1152410 | 0.806202 | 9.224920e-50 | -8.615850e-47 |
| Msa0524440 | Msa1152410 | 0.803742 | 3.014852e-49 | -8.615850e-47 |
| Msa0569780 | Msa1152410 | 0.807113 | 5.924006e-50 | -8.615850e-47 |
| Msa0860250 | Msa1152410 | 0.821984 | 3.019617e-53 | -8.615850e-47 |
| Msa0863720 | Msa1152410 | 0.815412 | 9.366185e-52 | -8.615850e-47 |
| Msa0865970 | Msa1152410 | 0.845862 | 3.116583e-59 | -8.615850e-47 |
| Msa0866070 | Msa1152410 | 0.844595 | 6.859940e-59 | -8.615850e-47 |
| Msa0968050 | Msa1152410 | 0.835490 | 1.627585e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152410 | MtrunA17_Chr7g0242601 | 94.843 | 446 | 21 | 1 | 1 | 444 | 1 | 446 | 0.0 | 848 |
| Msa1152410 | MtrunA17_Chr4g0006241 | 75.000 | 448 | 100 | 3 | 1 | 444 | 1 | 440 | 0.0 | 667 |
| Msa1152410 | MtrunA17_Chr5g0430241 | 71.225 | 351 | 101 | 0 | 87 | 437 | 35 | 385 | 0.0 | 555 |
| Msa1152410 | MtrunA17_Chr3g0105171 | 68.717 | 374 | 111 | 2 | 73 | 444 | 16 | 385 | 0.0 | 530 |
| Msa1152410 | MtrunA17_Chr7g0258651 | 37.313 | 335 | 189 | 7 | 80 | 396 | 15 | 346 | 1.82e-63 | 209 |
| Msa1152410 | MtrunA17_Chr1g0175301 | 35.714 | 336 | 197 | 6 | 76 | 395 | 13 | 345 | 2.88e-63 | 209 |
| Msa1152410 | MtrunA17_Chr1g0210511 | 37.607 | 234 | 135 | 4 | 172 | 396 | 10 | 241 | 5.74e-41 | 147 |
| Msa1152410 | MtrunA17_Chr4g0074071 | 28.443 | 334 | 223 | 8 | 69 | 397 | 75 | 397 | 2.19e-32 | 127 |
| Msa1152410 | MtrunA17_Chr2g0305881 | 37.288 | 118 | 65 | 3 | 91 | 203 | 95 | 208 | 4.43e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152410 | AT5G05580.1 | 70.203 | 443 | 119 | 3 | 1 | 440 | 1 | 433 | 0.0 | 657 |
| Msa1152410 | AT3G11170.1 | 69.526 | 443 | 133 | 2 | 1 | 442 | 1 | 442 | 0.0 | 646 |
| Msa1152410 | AT5G05580.2 | 71.134 | 388 | 99 | 3 | 1 | 385 | 1 | 378 | 0.0 | 575 |
| Msa1152410 | AT2G29980.1 | 65.365 | 384 | 128 | 2 | 63 | 444 | 4 | 384 | 0.0 | 525 |
| Msa1152410 | AT2G29980.2 | 63.636 | 275 | 97 | 1 | 63 | 337 | 4 | 275 | 1.20e-125 | 366 |
| Msa1152410 | AT3G12120.1 | 36.527 | 334 | 192 | 8 | 80 | 396 | 15 | 345 | 3.42e-65 | 214 |
| Msa1152410 | AT3G12120.2 | 36.527 | 334 | 192 | 8 | 80 | 396 | 15 | 345 | 3.42e-65 | 214 |
| Msa1152410 | AT4G30950.1 | 29.132 | 357 | 224 | 12 | 52 | 394 | 54 | 395 | 4.29e-33 | 130 |
Find 124 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTACTCATGCTTTA+TGG | 0.109554 | 7_4:-38021324 | Msa1152410:CDS |
| TAACTATGTGACCACATTTA+AGG | 0.150984 | 7_4:+38019890 | None:intergenic |
| GGATGGTTTGGCCTCTTTAT+TGG | 0.161417 | 7_4:-38022609 | Msa1152410:CDS |
| CTGCTCAAGGAACCATGTTT+TGG | 0.170227 | 7_4:-38022585 | Msa1152410:CDS |
| GCAAAACCTGTTCTCGGTTT+TGG | 0.196167 | 7_4:+38022976 | None:intergenic |
| GATGGTTTGGCCTCTTTATT+GGG | 0.236131 | 7_4:-38022608 | Msa1152410:CDS |
| AACTAACTTGATCATAATTT+AGG | 0.238459 | 7_4:+38020001 | None:intergenic |
| TTCTTAATAATTGGATGGTT+TGG | 0.246549 | 7_4:-38022621 | Msa1152410:CDS |
| GGAAGAGGAGCTGATTTCTT+TGG | 0.246608 | 7_4:+38020319 | None:intergenic |
| ACTACTATTGACCGCGATTA+TGG | 0.247284 | 7_4:-38020568 | Msa1152410:CDS |
| ATTTGATGAGTTATGGCTTT+TGG | 0.259436 | 7_4:+38023276 | None:intergenic |
| GTTTGGTCCAAGTGAGAAAA+AGG | 0.260081 | 7_4:-38021421 | Msa1152410:CDS |
| TTTCAACATGGCCATGATTC+TGG | 0.264541 | 7_4:+38021989 | None:intergenic |
| ACCTTATTGGAGAATTTATA+AGG | 0.270680 | 7_4:-38020291 | Msa1152410:CDS |
| ACCAGTCTTCCCAGGACTTC+TGG | 0.274716 | 7_4:+38021470 | None:intergenic |
| TCCTTAAAATCACAAGCTTT+TGG | 0.294485 | 7_4:+38022880 | None:intergenic |
| CTTATATCAGCCAATGTAAA+TGG | 0.296570 | 7_4:+38022748 | None:intergenic |
| AGAATGTGTTGGTGGGTATA+AGG | 0.298424 | 7_4:-38020085 | Msa1152410:three_prime_UTR |
| TCCTTATAAATTCTCCAATA+AGG | 0.310337 | 7_4:+38020290 | None:intergenic |
| AAATTTAGCCTTTGAATTGT+TGG | 0.315210 | 7_4:+38022948 | None:intergenic |
| AATCATGACCAAGAACAAAA+AGG | 0.317453 | 7_4:+38022560 | None:intergenic |
| CATCCCAGCAGTGACTTGTT+TGG | 0.326413 | 7_4:-38021438 | Msa1152410:CDS |
| TCAATTCTTGTTCCCTATCA+TGG | 0.336107 | 7_4:-38022142 | Msa1152410:CDS |
| TCTTAAATTTCATTCTGATT+TGG | 0.337793 | 7_4:+38020189 | None:intergenic |
| CAAGTTGCCATGGAAGATTA+AGG | 0.367176 | 7_4:+38023042 | None:intergenic |
| CTTAATCTTCCATGGCAACT+TGG | 0.368742 | 7_4:-38023041 | Msa1152410:exon |
| CCTAATCTTAACAGTGTTGT+TGG | 0.371102 | 7_4:-38022181 | Msa1152410:CDS |
| AGTCACTGCTGGGATGGAAA+TGG | 0.376732 | 7_4:+38021445 | None:intergenic |
| GCTATGGTGGCATTGCTTGT+AGG | 0.377173 | 7_4:-38021369 | Msa1152410:CDS |
| CCAACAACACTGTTAAGATT+AGG | 0.378693 | 7_4:+38022181 | None:intergenic |
| TAAAGCATGAGTAATGGAAT+TGG | 0.386548 | 7_4:+38021327 | None:intergenic |
| AATGAAGAAAAGGGTGCGTT+TGG | 0.387722 | 7_4:+38023252 | None:intergenic |
| TGATAACTTCTACTGCTTGT+TGG | 0.390054 | 7_4:-38021395 | Msa1152410:CDS |
| CACTAATTTCAGAATCTGTT+TGG | 0.396613 | 7_4:+38020218 | None:intergenic |
| CATAACATACCATCCATGAT+AGG | 0.399195 | 7_4:+38022129 | None:intergenic |
| ATGAAGTGGGCCAGAAGTCC+TGG | 0.407514 | 7_4:-38021480 | Msa1152410:intron |
| ACTTCATAAAAGAAAGTGTT+TGG | 0.411656 | 7_4:-38020118 | Msa1152410:three_prime_UTR |
| TCTTTCACCCAACAATGCTT+TGG | 0.417306 | 7_4:+38022715 | None:intergenic |
| CAGCAATACCAAAGCATTGT+TGG | 0.422355 | 7_4:-38022723 | Msa1152410:CDS |
| GTGGCATTGCTTGTAGGATT+GGG | 0.423209 | 7_4:-38021363 | Msa1152410:CDS |
| CCCAACTCACAGAATTCAAA+AGG | 0.425477 | 7_4:-38023203 | Msa1152410:five_prime_UTR |
| CAAACAGATTCTGAAATTAG+TGG | 0.428433 | 7_4:-38020217 | Msa1152410:CDS |
| GTAGGATTGGGATTTACAAT+TGG | 0.429127 | 7_4:-38021351 | Msa1152410:CDS |
| GACACAGCAAAACCTGTTCT+CGG | 0.433489 | 7_4:+38022970 | None:intergenic |
| ATTGTTGGGTGAAAGATTCA+TGG | 0.438978 | 7_4:-38022708 | Msa1152410:CDS |
| GAGGCAGCAAGGCCTGTGTT+TGG | 0.442475 | 7_4:-38020358 | Msa1152410:CDS |
| TAGGAATGGAGCTATCTTAG+AGG | 0.444853 | 7_4:-38020598 | Msa1152410:CDS |
| TACTGCTTGTTGGACTGCTA+TGG | 0.447734 | 7_4:-38021385 | Msa1152410:CDS |
| GTTTGGAATTTGATGAGTTA+TGG | 0.448091 | 7_4:+38023269 | None:intergenic |
| TCAATTGAGTCAACCCTCAA+TGG | 0.449956 | 7_4:+38022826 | None:intergenic |
| GTATTTCCAAAACCGAGAAC+AGG | 0.460507 | 7_4:-38022982 | Msa1152410:CDS |
| AGGTGATAGTGTGGAATTTG+AGG | 0.461549 | 7_4:+38020490 | None:intergenic |
| GTCACTGCTGGGATGGAAAT+GGG | 0.462406 | 7_4:+38021446 | None:intergenic |
| GGTGGCATTGCTTGTAGGAT+TGG | 0.463654 | 7_4:-38021364 | Msa1152410:CDS |
| GTTGGGTTGAAGAAAGTTGA+TGG | 0.464173 | 7_4:+38023220 | None:intergenic |
| AACTTTATGAGAAGTTCAAA+AGG | 0.464571 | 7_4:+38020161 | None:intergenic |
| GCCAGAAGTCCTGGGAAGAC+TGG | 0.465518 | 7_4:-38021471 | Msa1152410:CDS |
| AATTGAACAAGAACATGAAC+AGG | 0.467947 | 7_4:-38022809 | Msa1152410:CDS |
| ACAAGAACATGAACAGGAAC+AGG | 0.468800 | 7_4:-38022803 | Msa1152410:CDS |
| TATACAGGAGAATTAGTCAT+AGG | 0.472631 | 7_4:-38022020 | Msa1152410:intron |
| CCTCTTTATTGGGCTGCTCA+AGG | 0.476332 | 7_4:-38022598 | Msa1152410:CDS |
| TGGACCAAACAAGTCACTGC+TGG | 0.478611 | 7_4:+38021434 | None:intergenic |
| GTGACTTACTTGCACCATCA+TGG | 0.478921 | 7_4:-38021166 | Msa1152410:CDS |
| TATTTGCTAAATTAGCACTT+TGG | 0.479436 | 7_4:-38019975 | Msa1152410:three_prime_UTR |
| GCTTTAAGAGAATGAAGAAA+AGG | 0.486058 | 7_4:+38023242 | None:intergenic |
| AATTCTCCAATAAGGTGAAA+AGG | 0.487740 | 7_4:+38020298 | None:intergenic |
| AATAACATTCACCATGACAT+TGG | 0.490823 | 7_4:-38020538 | Msa1152410:CDS |
| CTGTGACCCTTAATCTTCCA+TGG | 0.490908 | 7_4:-38023049 | Msa1152410:exon |
| AAGTTGCCATGGAAGATTAA+GGG | 0.493344 | 7_4:+38023043 | None:intergenic |
| TTAATCTTCCATGGCAACTT+GGG | 0.497357 | 7_4:-38023040 | Msa1152410:exon |
| GAGATGAAACTTACAACATA+CGG | 0.502661 | 7_4:+38021297 | None:intergenic |
| AGCAATACCAAAGCATTGTT+GGG | 0.503948 | 7_4:-38022722 | Msa1152410:CDS |
| CTATTGACCGCGATTATGGA+TGG | 0.507864 | 7_4:-38020564 | Msa1152410:CDS |
| GAGTTACCAGAGTTTGATCC+TGG | 0.511019 | 7_4:-38022781 | Msa1152410:CDS |
| GAATGTGAGTACTCCATTGA+GGG | 0.511988 | 7_4:-38022839 | Msa1152410:CDS |
| GGTGATAGTGTGGAATTTGA+GGG | 0.516178 | 7_4:+38020491 | None:intergenic |
| GGATATGCAAGCAATGGAAA+AGG | 0.519991 | 7_4:+38021606 | None:intergenic |
| TTTAAGGAAAAGAGAAAATG+GGG | 0.522052 | 7_4:-38022865 | Msa1152410:CDS |
| AGGACTCATCACCAGAATCA+TGG | 0.529486 | 7_4:-38022000 | Msa1152410:CDS |
| TGCTGTGTCCAACAATTCAA+AGG | 0.531533 | 7_4:-38022956 | Msa1152410:CDS |
| AAATGACGAGTCTTGGCATC+CGG | 0.531545 | 7_4:-38021968 | Msa1152410:intron |
| GATCATTATGTTAGTGACAC+TGG | 0.532354 | 7_4:-38020256 | Msa1152410:CDS |
| CTTTAAGAGAATGAAGAAAA+GGG | 0.535996 | 7_4:+38023243 | None:intergenic |
| TTCACCACCACCATTTACAT+TGG | 0.537892 | 7_4:-38022758 | Msa1152410:CDS |
| TTCTTGTTCCCTATCATGGA+TGG | 0.540256 | 7_4:-38022138 | Msa1152410:intron |
| TGATAAAACCCAAGTTGCCA+TGG | 0.540293 | 7_4:+38023032 | None:intergenic |
| TTTGAAAAGTTCCTTAAATG+TGG | 0.540341 | 7_4:-38019901 | Msa1152410:three_prime_UTR |
| GACAAATTACCTTGGTATCG+TGG | 0.541472 | 7_4:-38021136 | Msa1152410:CDS |
| ATGTTGAAAATGACGAGTCT+TGG | 0.543891 | 7_4:-38021975 | Msa1152410:CDS |
| CCAATAAGGTGAAAAGGAAG+AGG | 0.544622 | 7_4:+38020304 | None:intergenic |
| TGAATGTGAGTACTCCATTG+AGG | 0.554279 | 7_4:-38022840 | Msa1152410:CDS |
| AAATGGGAACCAGTCTTCCC+AGG | 0.559704 | 7_4:+38021462 | None:intergenic |
| TCATAAAAGAAAGTGTTTGG+TGG | 0.560930 | 7_4:-38020115 | Msa1152410:three_prime_UTR |
| ACTCCATAAAGCATGAGTAA+TGG | 0.560961 | 7_4:+38021321 | None:intergenic |
| CAAACAAGTCACTGCTGGGA+TGG | 0.566530 | 7_4:+38021439 | None:intergenic |
| GGACCAAACAAGTCACTGCT+GGG | 0.570996 | 7_4:+38021435 | None:intergenic |
| GTAAATGGTGGTGGTGAACC+AGG | 0.571749 | 7_4:+38022763 | None:intergenic |
| GTTTGCAGACTGAGGCAGCA+AGG | 0.573397 | 7_4:-38020369 | Msa1152410:intron |
| TGCTTGTTGGACTGCTATGG+TGG | 0.574412 | 7_4:-38021382 | Msa1152410:CDS |
| ACTTTATGAGAAGTTCAAAA+GGG | 0.575431 | 7_4:+38020162 | None:intergenic |
| CCTTGAGCAGCCCAATAAAG+AGG | 0.576755 | 7_4:+38022598 | None:intergenic |
| GAAATTAAAGAATGTGTTGG+TGG | 0.580911 | 7_4:-38020093 | Msa1152410:three_prime_UTR |
| TACACAGGATATGCAAGCAA+TGG | 0.581321 | 7_4:+38021600 | None:intergenic |
| GTGGAAATTAAAGAATGTGT+TGG | 0.581436 | 7_4:-38020096 | Msa1152410:three_prime_UTR |
| TTTGGAAATACTGGAGCAAG+TGG | 0.586703 | 7_4:+38022994 | None:intergenic |
| TGAAGTGGGCCAGAAGTCCT+GGG | 0.586957 | 7_4:-38021479 | Msa1152410:intron |
| AGATACTCACAGCTTCAACT+AGG | 0.590574 | 7_4:+38020470 | None:intergenic |
| AGTGTGGAATTTGAGGGAAA+AGG | 0.599823 | 7_4:+38020497 | None:intergenic |
| TTGTAATATTCTCCAAACAC+AGG | 0.600552 | 7_4:+38020346 | None:intergenic |
| ATAACATACCATCCATGATA+GGG | 0.602383 | 7_4:+38022130 | None:intergenic |
| GAATGGAGCTATCTTAGAGG+TGG | 0.607399 | 7_4:-38020595 | Msa1152410:CDS |
| CCAACTCACAGAATTCAAAA+GGG | 0.608267 | 7_4:-38023202 | Msa1152410:five_prime_UTR |
| ATTACCTTGGTATCGTGGAA+AGG | 0.611215 | 7_4:-38021131 | Msa1152410:intron |
| GTCATGAAGACAAATTACCT+TGG | 0.612404 | 7_4:-38021144 | Msa1152410:CDS |
| GGTGAACCAGGATCAAACTC+TGG | 0.614380 | 7_4:+38022775 | None:intergenic |
| GCTTCAACTAGGTGATAGTG+TGG | 0.622119 | 7_4:+38020481 | None:intergenic |
| TCAGCCAATGTAAATGGTGG+TGG | 0.634606 | 7_4:+38022754 | None:intergenic |
| TGACATGAGTTCCAATGTCA+TGG | 0.641062 | 7_4:+38020527 | None:intergenic |
| AAATAACTTACAAGGTACAC+AGG | 0.642457 | 7_4:+38021585 | None:intergenic |
| AAATTAAAGAATGTGTTGGT+GGG | 0.647464 | 7_4:-38020092 | Msa1152410:three_prime_UTR |
| ATTTGTCTTCATGACCATGA+TGG | 0.654713 | 7_4:+38021152 | None:intergenic |
| AGTACCTTTCCACGATACCA+AGG | 0.662444 | 7_4:+38021127 | None:intergenic |
| ATATCAGCCAATGTAAATGG+TGG | 0.666664 | 7_4:+38022751 | None:intergenic |
| TATTAATCCATCCATAATCG+CGG | 0.702360 | 7_4:+38020557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATGTAAACTAAAAT+CGG | + | chr7_4:38022557-38022576 | None:intergenic | 10.0% |
| !! | TAGTATAAAATATTGTCAAA+CGG | + | chr7_4:38020790-38020809 | None:intergenic | 15.0% |
| !!! | TACTTTTAATTTTTTTGCTA+TGG | - | chr7_4:38020886-38020905 | Msa1152410:intron | 15.0% |
| !! | ATTTGAATATTAATTAGTTC+TGG | - | chr7_4:38021653-38021672 | Msa1152410:CDS | 15.0% |
| !! | ATATAAAAAATTCACTTGTT+AGG | + | chr7_4:38023139-38023158 | None:intergenic | 15.0% |
| !!! | ATTGATTATATTTTTCATGA+AGG | - | chr7_4:38023157-38023176 | Msa1152410:five_prime_UTR | 15.0% |
| !! | CAAAAATTGGTCATAAAAAT+TGG | + | chr7_4:38020070-38020089 | None:intergenic | 20.0% |
| !!! | GAATCAGAAACAAAATATTT+TGG | + | chr7_4:38020104-38020123 | None:intergenic | 20.0% |
| !!! | AATTCAAAGGCTAAATTTTT+AGG | - | chr7_4:38020247-38020266 | Msa1152410:CDS | 20.0% |
| !!! | ATTTTAAGGAAAAGAGAAAA+TGG | - | chr7_4:38020323-38020342 | Msa1152410:CDS | 20.0% |
| !!! | TTTTAAGGAAAAGAGAAAAT+GGG | - | chr7_4:38020324-38020343 | Msa1152410:CDS | 20.0% |
| !!! | TTTGATTTTGATTGTTGTTT+TGG | - | chr7_4:38020952-38020971 | Msa1152410:intron | 20.0% |
| !! | TTGTAAACGCAATTTAAAAA+AGG | - | chr7_4:38021368-38021387 | Msa1152410:CDS | 20.0% |
| !!! | TTTTAATTTTCATTAGACGT+CGG | - | chr7_4:38021398-38021417 | Msa1152410:CDS | 20.0% |
| !! | AGAAAAAATATTTAAGAGCT+TGG | - | chr7_4:38021529-38021548 | Msa1152410:intron | 20.0% |
| !! | AAATTCTAGTCAAAATTTGT+AGG | + | chr7_4:38021637-38021656 | None:intergenic | 20.0% |
| !!! | TTAATCTTTATCTGTTGATT+AGG | - | chr7_4:38022573-38022592 | Msa1152410:CDS | 20.0% |
| !! | TCTTAAATTTCATTCTGATT+TGG | + | chr7_4:38023004-38023023 | None:intergenic | 20.0% |
| !! | AACTAACTTGATCATAATTT+AGG | + | chr7_4:38023192-38023211 | None:intergenic | 20.0% |
| !! | CTTTAAGAGAATGAAGAAAA+GGG | + | chr7_4:38019950-38019969 | None:intergenic | 25.0% |
| ! | GGTGTAAATACTTCAAAAAT+TGG | + | chr7_4:38020083-38020102 | None:intergenic | 25.0% |
| !! | AAATTTAGCCTTTGAATTGT+TGG | + | chr7_4:38020245-38020264 | None:intergenic | 25.0% |
| !!! | AAATTTTTAGGCACAAAACA+AGG | - | chr7_4:38020259-38020278 | Msa1152410:CDS | 25.0% |
| ! | TTTAAGGAAAAGAGAAAATG+GGG | - | chr7_4:38020325-38020344 | Msa1152410:CDS | 25.0% |
| !!! | AGAGATGTTGTTATTGTTTT+TGG | - | chr7_4:38020526-38020545 | Msa1152410:CDS | 25.0% |
| !!! | TGTTGTTATTGTTTTTGGTT+TGG | - | chr7_4:38020531-38020550 | Msa1152410:CDS | 25.0% |
| !! | TGCTTTTCTTAATAATTGGA+TGG | - | chr7_4:38020564-38020583 | Msa1152410:CDS | 25.0% |
| ! | TTCTTAATAATTGGATGGTT+TGG | - | chr7_4:38020569-38020588 | Msa1152410:CDS | 25.0% |
| ! | TTGTCGATAGTAGAAAATAA+CGG | - | chr7_4:38020716-38020735 | Msa1152410:intron | 25.0% |
| ! | TATGTTTACCTTGATTATAC+AGG | - | chr7_4:38021155-38021174 | Msa1152410:CDS | 25.0% |
| !! | CATGAATTTTCATTAGATGT+CGG | + | chr7_4:38021327-38021346 | None:intergenic | 25.0% |
| ! | AATACTCTCAAATGAGAAAA+TGG | + | chr7_4:38021448-38021467 | None:intergenic | 25.0% |
| !!! | ATATTAATTAGTTCTGGTAG+AGG | - | chr7_4:38021659-38021678 | Msa1152410:CDS | 25.0% |
| !! | TTTTCATTGATCAATTAGCA+TGG | - | chr7_4:38021917-38021936 | Msa1152410:intron | 25.0% |
| !!! | ATTAGCATGGTTTTAGTTTT+TGG | - | chr7_4:38021930-38021949 | Msa1152410:intron | 25.0% |
| !! | ATTTAGAGCAAAGTCAAATT+AGG | + | chr7_4:38021975-38021994 | None:intergenic | 25.0% |
| ! | TTCAGTCAAATATCAGATAT+TGG | - | chr7_4:38022129-38022148 | Msa1152410:intron | 25.0% |
| ! | TATTGGATCAATGTACAATT+GGG | + | chr7_4:38022157-38022176 | None:intergenic | 25.0% |
| ! | TTATTGGATCAATGTACAAT+TGG | + | chr7_4:38022158-38022177 | None:intergenic | 25.0% |
| !!! | AGTGATTTGTTTTTCTAGTT+AGG | - | chr7_4:38022776-38022795 | Msa1152410:CDS | 25.0% |
| ! | ACCTTATTGGAGAATTTATA+AGG | - | chr7_4:38022899-38022918 | Msa1152410:CDS | 25.0% |
| ! | TCCTTATAAATTCTCCAATA+AGG | + | chr7_4:38022903-38022922 | None:intergenic | 25.0% |
| ! | ACTTTATGAGAAGTTCAAAA+GGG | + | chr7_4:38023031-38023050 | None:intergenic | 25.0% |
| ! | AACTTTATGAGAAGTTCAAA+AGG | + | chr7_4:38023032-38023051 | None:intergenic | 25.0% |
| !! | AAACACTTTCTTTTATGAAG+TGG | + | chr7_4:38023073-38023092 | None:intergenic | 25.0% |
| !!! | ACTTCATAAAAGAAAGTGTT+TGG | - | chr7_4:38023072-38023091 | Msa1152410:intron | 25.0% |
| !! | AAATTAAAGAATGTGTTGGT+GGG | - | chr7_4:38023098-38023117 | Msa1152410:intron | 25.0% |
| !! | TATTTGCTAAATTAGCACTT+TGG | - | chr7_4:38023215-38023234 | Msa1152410:five_prime_UTR | 25.0% |
| ! | ATTTGATGAGTTATGGCTTT+TGG | + | chr7_4:38019917-38019936 | None:intergenic | 30.0% |
| ! | GTTTGGAATTTGATGAGTTA+TGG | + | chr7_4:38019924-38019943 | None:intergenic | 30.0% |
| !! | GCTTTAAGAGAATGAAGAAA+AGG | + | chr7_4:38019951-38019970 | None:intergenic | 30.0% |
| ! | ACCAAAAGCTTGTGATTTTA+AGG | - | chr7_4:38020309-38020328 | Msa1152410:CDS | 30.0% |
| ! | TCCTTAAAATCACAAGCTTT+TGG | + | chr7_4:38020313-38020332 | None:intergenic | 30.0% |
| AATTGAACAAGAACATGAAC+AGG | - | chr7_4:38020381-38020400 | Msa1152410:intron | 30.0% | |
| CTTATATCAGCCAATGTAAA+TGG | + | chr7_4:38020445-38020464 | None:intergenic | 30.0% | |
| !!! | CTGCTGCTTTTCTTAATAAT+TGG | - | chr7_4:38020560-38020579 | Msa1152410:CDS | 30.0% |
| ATCATGACCAAGAACAAAAA+GGG | + | chr7_4:38020632-38020651 | None:intergenic | 30.0% | |
| AATCATGACCAAGAACAAAA+AGG | + | chr7_4:38020633-38020652 | None:intergenic | 30.0% | |
| ! | TTTTTGTTCTTGGTCATGAT+TGG | - | chr7_4:38020632-38020651 | Msa1152410:intron | 30.0% |
| !! | TTTTTGCTATGGTTGACTTT+TGG | - | chr7_4:38020897-38020916 | Msa1152410:intron | 30.0% |
| !! | TTTTGCTATGGTTGACTTTT+GGG | - | chr7_4:38020898-38020917 | Msa1152410:intron | 30.0% |
| !!! | TGTTGTTTTGGAATTTTCAG+TGG | - | chr7_4:38020964-38020983 | Msa1152410:intron | 30.0% |
| ATAACATACCATCCATGATA+GGG | + | chr7_4:38021063-38021082 | None:intergenic | 30.0% | |
| CTAATTCTCCTGTATAATCA+AGG | + | chr7_4:38021166-38021185 | None:intergenic | 30.0% | |
| TATACAGGAGAATTAGTCAT+AGG | - | chr7_4:38021170-38021189 | Msa1152410:CDS | 30.0% | |
| AAATAACTTACAAGGTACAC+AGG | + | chr7_4:38021608-38021627 | None:intergenic | 30.0% | |
| GGCACAATAAATAACTTACA+AGG | + | chr7_4:38021616-38021635 | None:intergenic | 30.0% | |
| ! | TTGTTGTTCTTTGAATGAAG+TGG | - | chr7_4:38021696-38021715 | Msa1152410:intron | 30.0% |
| TGTTGTTCTTTGAATGAAGT+GGG | - | chr7_4:38021697-38021716 | Msa1152410:intron | 30.0% | |
| ! | TAAAGCATGAGTAATGGAAT+TGG | + | chr7_4:38021866-38021885 | None:intergenic | 30.0% |
| ATTCCATTACTCATGCTTTA+TGG | - | chr7_4:38021866-38021885 | Msa1152410:intron | 30.0% | |
| GAGATGAAACTTACAACATA+CGG | + | chr7_4:38021896-38021915 | None:intergenic | 30.0% | |
| ! | TTGACTTTGCTCTAAATTGA+AGG | - | chr7_4:38021978-38021997 | Msa1152410:CDS | 30.0% |
| ! | AATTGAAGGTTTTTGTGATG+TGG | - | chr7_4:38021992-38022011 | Msa1152410:CDS | 30.0% |
| !!! | TTTTTGGTTTGTAGAAGTGT+CGG | - | chr7_4:38022215-38022234 | Msa1152410:intron | 30.0% |
| ATCAATCAAATTTCGATCGT+TGG | - | chr7_4:38022238-38022257 | Msa1152410:intron | 30.0% | |
| TTAATCCAACAGACGAAATA+TGG | - | chr7_4:38022485-38022504 | Msa1152410:intron | 30.0% | |
| ! | CTTTATCTGTTGATTAGGAA+TGG | - | chr7_4:38022578-38022597 | Msa1152410:CDS | 30.0% |
| TATTAATCCATCCATAATCG+CGG | + | chr7_4:38022636-38022655 | None:intergenic | 30.0% | |
| AATAACATTCACCATGACAT+TGG | - | chr7_4:38022652-38022671 | Msa1152410:CDS | 30.0% | |
| CTCTATCTTAGTTGAAACAA+TGG | - | chr7_4:38022747-38022766 | Msa1152410:CDS | 30.0% | |
| TTGTAATATTCTCCAAACAC+AGG | + | chr7_4:38022847-38022866 | None:intergenic | 30.0% | |
| AATTCTCCAATAAGGTGAAA+AGG | + | chr7_4:38022895-38022914 | None:intergenic | 30.0% | |
| CACTAATTTCAGAATCTGTT+TGG | + | chr7_4:38022975-38022994 | None:intergenic | 30.0% | |
| !! | CAAACAGATTCTGAAATTAG+TGG | - | chr7_4:38022973-38022992 | Msa1152410:CDS | 30.0% |
| !! | TCATAAAAGAAAGTGTTTGG+TGG | - | chr7_4:38023075-38023094 | Msa1152410:intron | 30.0% |
| GTGGAAATTAAAGAATGTGT+TGG | - | chr7_4:38023094-38023113 | Msa1152410:intron | 30.0% | |
| GAAATTAAAGAATGTGTTGG+TGG | - | chr7_4:38023097-38023116 | Msa1152410:intron | 30.0% | |
| ! | CCTTTTGAATTCTGTGAGTT+GGG | + | chr7_4:38019990-38020009 | None:intergenic | 35.0% |
| CCAACTCACAGAATTCAAAA+GGG | - | chr7_4:38019988-38020007 | Msa1152410:three_prime_UTR | 35.0% | |
| AAGTTGCCATGGAAGATTAA+GGG | + | chr7_4:38020150-38020169 | None:intergenic | 35.0% | |
| TTAATCTTCCATGGCAACTT+GGG | - | chr7_4:38020150-38020169 | Msa1152410:three_prime_UTR | 35.0% | |
| !! | ACTTGGGTTTTATCAGAATG+TGG | - | chr7_4:38020166-38020185 | Msa1152410:three_prime_UTR | 35.0% |
| ATATCAGCCAATGTAAATGG+TGG | + | chr7_4:38020442-38020461 | None:intergenic | 35.0% | |
| !! | AGCAATACCAAAGCATTGTT+GGG | - | chr7_4:38020468-38020487 | Msa1152410:intron | 35.0% |
| ATTGTTGGGTGAAAGATTCA+TGG | - | chr7_4:38020482-38020501 | Msa1152410:CDS | 35.0% | |
| ! | TTGTTCAAATTTTGCTACGC+AGG | - | chr7_4:38020740-38020759 | Msa1152410:intron | 35.0% |
| !! | TTTGGAATTTTCAGTGGTCA+TGG | - | chr7_4:38020970-38020989 | Msa1152410:intron | 35.0% |
| CCAACAACACTGTTAAGATT+AGG | + | chr7_4:38021012-38021031 | None:intergenic | 35.0% | |
| CCTAATCTTAACAGTGTTGT+TGG | - | chr7_4:38021009-38021028 | Msa1152410:intron | 35.0% | |
| TCAATTCTTGTTCCCTATCA+TGG | - | chr7_4:38021048-38021067 | Msa1152410:intron | 35.0% | |
| CATAACATACCATCCATGAT+AGG | + | chr7_4:38021064-38021083 | None:intergenic | 35.0% | |
| !! | AAGACTCGTCATTTTCAACA+TGG | + | chr7_4:38021216-38021235 | None:intergenic | 35.0% |
| ATGTTGAAAATGACGAGTCT+TGG | - | chr7_4:38021215-38021234 | Msa1152410:intron | 35.0% | |
| AGAGAATGTTATCTTCTCAC+CGG | + | chr7_4:38021244-38021263 | None:intergenic | 35.0% | |
| GTTTACAAAGTACGCTTACA+TGG | + | chr7_4:38021356-38021375 | None:intergenic | 35.0% | |
| ! | ATCACATCCTTTTTCTCACT+TGG | + | chr7_4:38021779-38021798 | None:intergenic | 35.0% |
| TGATAACTTCTACTGCTTGT+TGG | - | chr7_4:38021795-38021814 | Msa1152410:intron | 35.0% | |
| GTAGGATTGGGATTTACAAT+TGG | - | chr7_4:38021839-38021858 | Msa1152410:intron | 35.0% | |
| ACTCCATAAAGCATGAGTAA+TGG | + | chr7_4:38021872-38021891 | None:intergenic | 35.0% | |
| GTCAAATTAGGACTTCATTC+AGG | + | chr7_4:38021963-38021982 | None:intergenic | 35.0% | |
| ! | TTTTGTGATGTGGTTGGATT+TGG | - | chr7_4:38022002-38022021 | Msa1152410:CDS | 35.0% |
| ATTTGTCTTCATGACCATGA+TGG | + | chr7_4:38022041-38022060 | None:intergenic | 35.0% | |
| GTCATGAAGACAAATTACCT+TGG | - | chr7_4:38022046-38022065 | Msa1152410:intron | 35.0% | |
| TTGATCCAATAAGCGAGATA+TGG | - | chr7_4:38022166-38022185 | Msa1152410:CDS | 35.0% | |
| ! | CAATTGTACCTTGATTCGAT+AGG | - | chr7_4:38022265-38022284 | Msa1152410:intron | 35.0% |
| ATATTTGGCCTATCGAATCA+AGG | + | chr7_4:38022276-38022295 | None:intergenic | 35.0% | |
| CTAGTCTGTACAGTCATATT+TGG | + | chr7_4:38022291-38022310 | None:intergenic | 35.0% | |
| !!! | TAGACCACCAATGTGTTTTT+TGG | - | chr7_4:38022308-38022327 | Msa1152410:intron | 35.0% |
| CAAACCAAAAAACACATTGG+TGG | + | chr7_4:38022315-38022334 | None:intergenic | 35.0% | |
| GGACAAACCAAAAAACACAT+TGG | + | chr7_4:38022318-38022337 | None:intergenic | 35.0% | |
| ACAGTCAAGATTTGACTGAA+TGG | + | chr7_4:38022339-38022358 | None:intergenic | 35.0% | |
| CAAATCTTGACTGTTTGATG+AGG | - | chr7_4:38022345-38022364 | Msa1152410:intron | 35.0% | |
| CAGTGCAGTAAAGTCATATT+TGG | + | chr7_4:38022371-38022390 | None:intergenic | 35.0% | |
| CAGTCGAAACTTTGACTAAA+TGG | + | chr7_4:38022447-38022466 | None:intergenic | 35.0% | |
| TTAGTCAAAGTTTCGACTGT+TGG | - | chr7_4:38022448-38022467 | Msa1152410:intron | 35.0% | |
| GATCATTATGTTAGTGACAC+TGG | - | chr7_4:38022934-38022953 | Msa1152410:CDS | 35.0% | |
| !!! | GAGTTATGGCTTTTGGAACT+TGG | + | chr7_4:38019910-38019929 | None:intergenic | 40.0% |
| ! | AATGAAGAAAAGGGTGCGTT+TGG | + | chr7_4:38019941-38019960 | None:intergenic | 40.0% |
| !! | GTTGGGTTGAAGAAAGTTGA+TGG | + | chr7_4:38019973-38019992 | None:intergenic | 40.0% |
| CCCAACTCACAGAATTCAAA+AGG | - | chr7_4:38019987-38020006 | Msa1152410:three_prime_UTR | 40.0% | |
| ! | CCCTTTTGAATTCTGTGAGT+TGG | + | chr7_4:38019991-38020010 | None:intergenic | 40.0% |
| CAAGTTGCCATGGAAGATTA+AGG | + | chr7_4:38020151-38020170 | None:intergenic | 40.0% | |
| CTTAATCTTCCATGGCAACT+TGG | - | chr7_4:38020149-38020168 | Msa1152410:three_prime_UTR | 40.0% | |
| TGATAAAACCCAAGTTGCCA+TGG | + | chr7_4:38020161-38020180 | None:intergenic | 40.0% | |
| TTTGGAAATACTGGAGCAAG+TGG | + | chr7_4:38020199-38020218 | None:intergenic | 40.0% | |
| !!! | GTTCTCGGTTTTGGAAATAC+TGG | + | chr7_4:38020208-38020227 | None:intergenic | 40.0% |
| GTATTTCCAAAACCGAGAAC+AGG | - | chr7_4:38020208-38020227 | Msa1152410:CDS | 40.0% | |
| TGCTGTGTCCAACAATTCAA+AGG | - | chr7_4:38020234-38020253 | Msa1152410:CDS | 40.0% | |
| TGAATGTGAGTACTCCATTG+AGG | - | chr7_4:38020350-38020369 | Msa1152410:CDS | 40.0% | |
| GAATGTGAGTACTCCATTGA+GGG | - | chr7_4:38020351-38020370 | Msa1152410:CDS | 40.0% | |
| TCAATTGAGTCAACCCTCAA+TGG | + | chr7_4:38020367-38020386 | None:intergenic | 40.0% | |
| ACAAGAACATGAACAGGAAC+AGG | - | chr7_4:38020387-38020406 | Msa1152410:intron | 40.0% | |
| TTCACCACCACCATTTACAT+TGG | - | chr7_4:38020432-38020451 | Msa1152410:intron | 40.0% | |
| !! | CAGCAATACCAAAGCATTGT+TGG | - | chr7_4:38020467-38020486 | Msa1152410:intron | 40.0% |
| TCTTTCACCCAACAATGCTT+TGG | + | chr7_4:38020478-38020497 | None:intergenic | 40.0% | |
| ! | GATGGTTTGGCCTCTTTATT+GGG | - | chr7_4:38020582-38020601 | Msa1152410:CDS | 40.0% |
| ! | TGCTCAAGGAACCATGTTTT+GGG | - | chr7_4:38020606-38020625 | Msa1152410:intron | 40.0% |
| AACAAAAAGGGCCCAAAACA+TGG | + | chr7_4:38020620-38020639 | None:intergenic | 40.0% | |
| ! | TTTTGGGCCCTTTTTGTTCT+TGG | - | chr7_4:38020622-38020641 | Msa1152410:intron | 40.0% |
| ! | GACTTTTGGGCTGTAGAATT+TGG | - | chr7_4:38020911-38020930 | Msa1152410:intron | 40.0% |
| TTCTTGTTCCCTATCATGGA+TGG | - | chr7_4:38021052-38021071 | Msa1152410:intron | 40.0% | |
| TTTCAACATGGCCATGATTC+TGG | + | chr7_4:38021204-38021223 | None:intergenic | 40.0% | |
| ATGAGAAAATGGCACATGCA+CGG | + | chr7_4:38021437-38021456 | None:intergenic | 40.0% | |
| GGATATGCAAGCAATGGAAA+AGG | + | chr7_4:38021587-38021606 | None:intergenic | 40.0% | |
| TACACAGGATATGCAAGCAA+TGG | + | chr7_4:38021593-38021612 | None:intergenic | 40.0% | |
| GTTTGGTCCAAGTGAGAAAA+AGG | - | chr7_4:38021769-38021788 | Msa1152410:intron | 40.0% | |
| ! | GAAGGTTTTTGTGATGTGGT+TGG | - | chr7_4:38021996-38022015 | Msa1152410:CDS | 40.0% |
| GACAAATTACCTTGGTATCG+TGG | - | chr7_4:38022054-38022073 | Msa1152410:intron | 40.0% | |
| ATTACCTTGGTATCGTGGAA+AGG | - | chr7_4:38022059-38022078 | Msa1152410:intron | 40.0% | |
| AAAAGACTGTACAGCTACAG+AGG | + | chr7_4:38022110-38022129 | None:intergenic | 40.0% | |
| TGTAGCCATATCTCGCTTAT+TGG | + | chr7_4:38022174-38022193 | None:intergenic | 40.0% | |
| CGAGATATGGCTACATTGAT+CGG | - | chr7_4:38022179-38022198 | Msa1152410:CDS | 40.0% | |
| ATGACTTTACTGCACTGAGA+CGG | - | chr7_4:38022374-38022393 | Msa1152410:intron | 40.0% | |
| TAGGAATGGAGCTATCTTAG+AGG | - | chr7_4:38022592-38022611 | Msa1152410:CDS | 40.0% | |
| ACTACTATTGACCGCGATTA+TGG | - | chr7_4:38022622-38022641 | Msa1152410:CDS | 40.0% | |
| TGACATGAGTTCCAATGTCA+TGG | + | chr7_4:38022666-38022685 | None:intergenic | 40.0% | |
| AGTGTGGAATTTGAGGGAAA+AGG | + | chr7_4:38022696-38022715 | None:intergenic | 40.0% | |
| ! | GGTGATAGTGTGGAATTTGA+GGG | + | chr7_4:38022702-38022721 | None:intergenic | 40.0% |
| ! | AGGTGATAGTGTGGAATTTG+AGG | + | chr7_4:38022703-38022722 | None:intergenic | 40.0% |
| AGATACTCACAGCTTCAACT+AGG | + | chr7_4:38022723-38022742 | None:intergenic | 40.0% | |
| !! | TTTGCTTTGTTTGCAGACTG+AGG | - | chr7_4:38022813-38022832 | Msa1152410:CDS | 40.0% |
| CCAATAAGGTGAAAAGGAAG+AGG | + | chr7_4:38022889-38022908 | None:intergenic | 40.0% | |
| ! | CCTCTTCCTTTTCACCTTAT+TGG | - | chr7_4:38022886-38022905 | Msa1152410:CDS | 40.0% |
| ! | AGAATGTGTTGGTGGGTATA+AGG | - | chr7_4:38023105-38023124 | Msa1152410:intron | 40.0% |
| CTGTGACCCTTAATCTTCCA+TGG | - | chr7_4:38020141-38020160 | Msa1152410:three_prime_UTR | 45.0% | |
| ! | GCAAAACCTGTTCTCGGTTT+TGG | + | chr7_4:38020217-38020236 | None:intergenic | 45.0% |
| GACACAGCAAAACCTGTTCT+CGG | + | chr7_4:38020223-38020242 | None:intergenic | 45.0% | |
| GAGTTACCAGAGTTTGATCC+TGG | - | chr7_4:38020409-38020428 | Msa1152410:intron | 45.0% | |
| TCAGCCAATGTAAATGGTGG+TGG | + | chr7_4:38020439-38020458 | None:intergenic | 45.0% | |
| ! | GGATGGTTTGGCCTCTTTAT+TGG | - | chr7_4:38020581-38020600 | Msa1152410:CDS | 45.0% |
| ! | CTGCTCAAGGAACCATGTTT+TGG | - | chr7_4:38020605-38020624 | Msa1152410:intron | 45.0% |
| AGGACTCATCACCAGAATCA+TGG | - | chr7_4:38021190-38021209 | Msa1152410:CDS | 45.0% | |
| AAATGACGAGTCTTGGCATC+CGG | - | chr7_4:38021222-38021241 | Msa1152410:intron | 45.0% | |
| ! | TACTGCTTGTTGGACTGCTA+TGG | - | chr7_4:38021805-38021824 | Msa1152410:intron | 45.0% |
| GTGGCATTGCTTGTAGGATT+GGG | - | chr7_4:38021827-38021846 | Msa1152410:intron | 45.0% | |
| GTGACTTACTTGCACCATCA+TGG | - | chr7_4:38022024-38022043 | Msa1152410:intron | 45.0% | |
| AGTACCTTTCCACGATACCA+AGG | + | chr7_4:38022066-38022085 | None:intergenic | 45.0% | |
| !!! | CGGATGACTGCTAGTCTTTT+TGG | - | chr7_4:38022199-38022218 | Msa1152410:CDS | 45.0% |
| TGACTTTACTGCACTGAGAC+GGG | - | chr7_4:38022375-38022394 | Msa1152410:intron | 45.0% | |
| GAATGGAGCTATCTTAGAGG+TGG | - | chr7_4:38022595-38022614 | Msa1152410:CDS | 45.0% | |
| CTATTGACCGCGATTATGGA+TGG | - | chr7_4:38022626-38022645 | Msa1152410:CDS | 45.0% | |
| ! | GCTTCAACTAGGTGATAGTG+TGG | + | chr7_4:38022712-38022731 | None:intergenic | 45.0% |
| ! | GGAAGAGGAGCTGATTTCTT+TGG | + | chr7_4:38022874-38022893 | None:intergenic | 45.0% |
| GGTGAACCAGGATCAAACTC+TGG | + | chr7_4:38020418-38020437 | None:intergenic | 50.0% | |
| !! | GTAAATGGTGGTGGTGAACC+AGG | + | chr7_4:38020430-38020449 | None:intergenic | 50.0% |
| CCTTGAGCAGCCCAATAAAG+AGG | + | chr7_4:38020595-38020614 | None:intergenic | 50.0% | |
| CCTCTTTATTGGGCTGCTCA+AGG | - | chr7_4:38020592-38020611 | Msa1152410:CDS | 50.0% | |
| AAATGGGAACCAGTCTTCCC+AGG | + | chr7_4:38021731-38021750 | None:intergenic | 50.0% | |
| GTCACTGCTGGGATGGAAAT+GGG | + | chr7_4:38021747-38021766 | None:intergenic | 50.0% | |
| AGTCACTGCTGGGATGGAAA+TGG | + | chr7_4:38021748-38021767 | None:intergenic | 50.0% | |
| CAAACAAGTCACTGCTGGGA+TGG | + | chr7_4:38021754-38021773 | None:intergenic | 50.0% | |
| !! | CATCCCAGCAGTGACTTGTT+TGG | - | chr7_4:38021752-38021771 | Msa1152410:intron | 50.0% |
| GGACCAAACAAGTCACTGCT+GGG | + | chr7_4:38021758-38021777 | None:intergenic | 50.0% | |
| TGGACCAAACAAGTCACTGC+TGG | + | chr7_4:38021759-38021778 | None:intergenic | 50.0% | |
| ! | TGCTTGTTGGACTGCTATGG+TGG | - | chr7_4:38021808-38021827 | Msa1152410:intron | 50.0% |
| GCTATGGTGGCATTGCTTGT+AGG | - | chr7_4:38021821-38021840 | Msa1152410:intron | 50.0% | |
| GGTGGCATTGCTTGTAGGAT+TGG | - | chr7_4:38021826-38021845 | Msa1152410:intron | 50.0% | |
| TGCGGCCATATTTCGTCTGT+TGG | + | chr7_4:38022493-38022512 | None:intergenic | 50.0% | |
| CAGACGAAATATGGCCGCAT+TGG | - | chr7_4:38022494-38022513 | Msa1152410:intron | 50.0% | |
| ! | CGAAATATGGCCGCATTGGT+TGG | - | chr7_4:38022498-38022517 | Msa1152410:intron | 50.0% |
| !! | ATATGGCCGCATTGGTTGGA+CGG | - | chr7_4:38022502-38022521 | Msa1152410:intron | 50.0% |
| ATGAAGTGGGCCAGAAGTCC+TGG | - | chr7_4:38021710-38021729 | Msa1152410:intron | 55.0% | |
| TGAAGTGGGCCAGAAGTCCT+GGG | - | chr7_4:38021711-38021730 | Msa1152410:intron | 55.0% | |
| ACCAGTCTTCCCAGGACTTC+TGG | + | chr7_4:38021723-38021742 | None:intergenic | 55.0% | |
| TTGCAGCCGTCCAACCAATG+CGG | + | chr7_4:38022511-38022530 | None:intergenic | 55.0% | |
| GTTTGCAGACTGAGGCAGCA+AGG | - | chr7_4:38022821-38022840 | Msa1152410:CDS | 55.0% | |
| GCCAGAAGTCCTGGGAAGAC+TGG | - | chr7_4:38021719-38021738 | Msa1152410:intron | 60.0% | |
| ! | CTGAGACGGGCATCGCTAAC+TGG | - | chr7_4:38022388-38022407 | Msa1152410:intron | 60.0% |
| GAGGCAGCAAGGCCTGTGTT+TGG | - | chr7_4:38022832-38022851 | Msa1152410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 38019901 | 38023311 | 38019901 | ID=Msa1152410;Name=Msa1152410 |
| chr7_4 | mRNA | 38019901 | 38023311 | 38019901 | ID=Msa1152410-mRNA-1;Parent=Msa1152410;Name=Msa1152410-mRNA-1;_AED=0.12;_eAED=0.12;_QI=237|1|1|1|0.87|0.77|9|297|444 |
| chr7_4 | exon | 38019901 | 38020383 | 38019901 | ID=Msa1152410-mRNA-1:exon:9089;Parent=Msa1152410-mRNA-1 |
| chr7_4 | exon | 38020480 | 38020617 | 38020480 | ID=Msa1152410-mRNA-1:exon:9088;Parent=Msa1152410-mRNA-1 |
| chr7_4 | exon | 38021132 | 38021212 | 38021132 | ID=Msa1152410-mRNA-1:exon:9087;Parent=Msa1152410-mRNA-1 |
| chr7_4 | exon | 38021311 | 38021496 | 38021311 | ID=Msa1152410-mRNA-1:exon:9086;Parent=Msa1152410-mRNA-1 |
| chr7_4 | exon | 38021596 | 38021688 | 38021596 | ID=Msa1152410-mRNA-1:exon:9085;Parent=Msa1152410-mRNA-1 |
| chr7_4 | exon | 38021969 | 38022035 | 38021969 | ID=Msa1152410-mRNA-1:exon:9084;Parent=Msa1152410-mRNA-1 |
| chr7_4 | exon | 38022139 | 38022228 | 38022139 | ID=Msa1152410-mRNA-1:exon:9083;Parent=Msa1152410-mRNA-1 |
| chr7_4 | exon | 38022559 | 38023084 | 38022559 | ID=Msa1152410-mRNA-1:exon:9082;Parent=Msa1152410-mRNA-1 |
| chr7_4 | exon | 38023107 | 38023311 | 38023107 | ID=Msa1152410-mRNA-1:exon:9081;Parent=Msa1152410-mRNA-1 |
| chr7_4 | five_prime_UTR | 38023107 | 38023311 | 38023107 | ID=Msa1152410-mRNA-1:five_prime_utr;Parent=Msa1152410-mRNA-1 |
| chr7_4 | five_prime_UTR | 38023053 | 38023084 | 38023053 | ID=Msa1152410-mRNA-1:five_prime_utr;Parent=Msa1152410-mRNA-1 |
| chr7_4 | CDS | 38022559 | 38023052 | 38022559 | ID=Msa1152410-mRNA-1:cds;Parent=Msa1152410-mRNA-1 |
| chr7_4 | CDS | 38022139 | 38022228 | 38022139 | ID=Msa1152410-mRNA-1:cds;Parent=Msa1152410-mRNA-1 |
| chr7_4 | CDS | 38021969 | 38022035 | 38021969 | ID=Msa1152410-mRNA-1:cds;Parent=Msa1152410-mRNA-1 |
| chr7_4 | CDS | 38021596 | 38021688 | 38021596 | ID=Msa1152410-mRNA-1:cds;Parent=Msa1152410-mRNA-1 |
| chr7_4 | CDS | 38021311 | 38021496 | 38021311 | ID=Msa1152410-mRNA-1:cds;Parent=Msa1152410-mRNA-1 |
| chr7_4 | CDS | 38021132 | 38021212 | 38021132 | ID=Msa1152410-mRNA-1:cds;Parent=Msa1152410-mRNA-1 |
| chr7_4 | CDS | 38020480 | 38020617 | 38020480 | ID=Msa1152410-mRNA-1:cds;Parent=Msa1152410-mRNA-1 |
| chr7_4 | CDS | 38020198 | 38020383 | 38020198 | ID=Msa1152410-mRNA-1:cds;Parent=Msa1152410-mRNA-1 |
| chr7_4 | three_prime_UTR | 38019901 | 38020197 | 38019901 | ID=Msa1152410-mRNA-1:three_prime_utr;Parent=Msa1152410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
