AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163880 MtrunA17_Chr7g0261281 92.857 280 7 3 1 269 1 278 0.0 526
Msa1163880 MtrunA17_Chr1g0167661 48.029 279 110 9 1 269 1 254 9.17e-78 236
Msa1163880 MtrunA17_Chr1g0187761 47.778 270 128 5 1 269 1 258 1.02e-76 233
Msa1163880 MtrunA17_Chr1g0167691 48.387 279 110 8 1 269 1 255 8.42e-75 228
Msa1163880 MtrunA17_Chr7g0274581 74.167 120 31 0 1 120 1 120 9.41e-71 216
Msa1163880 MtrunA17_Chr4g0039971 76.271 118 28 0 1 118 2 119 1.34e-64 206
Msa1163880 MtrunA17_Chr2g0323411 75.000 116 29 0 1 116 1 116 1.84e-62 199
Msa1163880 MtrunA17_Chr8g0349261 55.319 188 63 6 1 176 1 179 6.84e-62 197
Msa1163880 MtrunA17_Chr8g0346561 63.158 133 49 0 1 133 1 133 1.05e-61 196
Msa1163880 MtrunA17_Chr1g0203411 45.740 223 94 2 1 196 1 223 1.84e-61 196
Msa1163880 MtrunA17_Chr3g0115821 54.878 164 73 1 1 163 1 164 9.49e-61 195
Msa1163880 MtrunA17_Chr7g0217741 71.552 116 33 0 1 116 1 116 1.03e-60 194
Msa1163880 MtrunA17_Chr4g0042671 73.276 116 31 0 1 116 1 116 1.85e-60 196
Msa1163880 MtrunA17_Chr2g0281071 72.650 117 31 1 1 116 1 117 2.28e-60 194
Msa1163880 MtrunA17_Chr4g0048511 71.795 117 32 1 1 116 1 117 1.20e-59 193
Msa1163880 MtrunA17_Chr7g0275911 66.393 122 40 1 1 122 1 121 2.95e-59 189
Msa1163880 MtrunA17_Chr3g0131121 65.414 133 40 1 1 127 1 133 1.02e-58 189
Msa1163880 MtrunA17_Chr6g0453471 69.828 116 35 0 1 116 1 116 4.35e-58 189
Msa1163880 MtrunA17_Chr5g0410961 69.828 116 35 0 1 116 1 116 1.40e-57 187
Msa1163880 MtrunA17_Chr4g0070611 63.158 133 48 1 1 132 1 133 2.72e-57 185
Msa1163880 MtrunA17_Chr4g0068061 67.241 116 38 0 1 116 1 116 4.88e-57 186
Msa1163880 MtrunA17_Chr4g0022931 65.891 129 43 1 1 128 1 129 7.43e-57 183
Msa1163880 MtrunA17_Chr4g0070641 63.158 133 48 1 1 132 1 133 1.12e-56 179
Msa1163880 MtrunA17_Chr5g0434571 50.267 187 79 3 1 181 37 215 1.25e-56 185
Msa1163880 MtrunA17_Chr5g0395281 67.797 118 38 0 1 118 1 118 1.98e-56 183
Msa1163880 MtrunA17_Chr3g0121241 45.673 208 92 3 5 191 35 242 4.44e-56 182
Msa1163880 MtrunA17_Chr3g0110351 69.828 116 35 0 1 116 1 116 4.88e-56 182
Msa1163880 MtrunA17_Chr4g0037141 54.717 159 58 2 1 145 1 159 7.59e-56 181
Msa1163880 MtrunA17_Chr2g0311221 70.000 110 33 0 2 111 4 113 1.24e-55 182
Msa1163880 MtrunA17_Chr4g0022911 64.122 131 44 2 1 128 1 131 1.70e-55 180
Msa1163880 MtrunA17_Chr7g0217221 44.292 219 115 3 1 219 1 212 2.54e-55 179
Msa1163880 MtrunA17_Chr4g0057031 68.966 116 36 0 1 116 1 116 2.92e-55 179
Msa1163880 MtrunA17_Chr2g0323351 62.595 131 49 0 1 131 1 131 3.66e-55 178
Msa1163880 MtrunA17_Chr4g0022901 68.333 120 37 1 1 119 1 120 6.77e-55 178
Msa1163880 MtrunA17_Chr7g0228891 56.579 152 66 0 1 152 1 152 1.57e-54 177
Msa1163880 MtrunA17_Chr4g0060721 61.667 120 46 0 1 120 2 121 1.71e-54 179
Msa1163880 MtrunA17_Chr7g0270891 66.949 118 39 0 1 118 1 118 2.29e-54 179
Msa1163880 MtrunA17_Chr1g0193801 66.102 118 40 0 1 118 1 118 9.15e-54 178
Msa1163880 MtrunA17_Chr8g0385321 66.379 116 39 0 1 116 1 116 2.01e-53 176
Msa1163880 MtrunA17_Chr7g0254411 56.164 146 62 1 1 144 1 146 4.95e-53 175
Msa1163880 MtrunA17_Chr3g0092401 58.779 131 53 1 1 130 2 132 1.36e-52 173
Msa1163880 MtrunA17_Chr4g0058631 64.655 116 41 0 1 116 1 116 5.02e-52 173
Msa1163880 MtrunA17_Chr1g0194951 63.793 116 42 0 1 116 1 116 7.42e-52 173
Msa1163880 MtrunA17_Chr1g0193371 63.866 119 43 0 1 119 1 119 1.22e-51 172
Msa1163880 MtrunA17_Chr4g0022891 65.487 113 39 0 1 113 1 113 1.77e-50 166
Msa1163880 MtrunA17_Chr6g0453211 63.964 111 40 0 1 111 1 111 3.03e-50 167
Msa1163880 MtrunA17_Chr3g0117091 63.793 116 42 0 1 116 1 116 3.82e-50 168
Msa1163880 MtrunA17_Chr1g0151941 59.829 117 46 1 1 116 1 117 7.81e-50 164
Msa1163880 MtrunA17_Chr5g0435101 43.094 181 86 2 3 183 2 165 1.46e-49 162
Msa1163880 MtrunA17_Chr4g0022881 63.158 114 42 0 1 114 1 114 1.98e-49 162
Msa1163880 MtrunA17_Chr3g0103281 62.069 116 44 0 1 116 1 116 8.16e-49 164
Msa1163880 MtrunA17_Chr7g0269831 65.517 116 40 0 1 116 1 116 1.14e-48 164
Msa1163880 MtrunA17_Chr1g0211161 62.281 114 43 0 3 116 4 117 2.94e-48 159
Msa1163880 MtrunA17_Chr7g0271241 64.815 108 38 0 1 108 1 108 3.22e-48 164
Msa1163880 MtrunA17_Chr5g0400821 50.641 156 63 2 1 155 1 143 3.43e-48 162
Msa1163880 MtrunA17_Chr2g0309911 61.261 111 43 0 6 116 5 115 6.21e-48 161
Msa1163880 MtrunA17_Chr6g0452271 58.621 116 48 0 1 116 1 116 1.26e-47 161
Msa1163880 MtrunA17_Chr2g0330041 59.483 116 47 0 1 116 1 116 1.65e-47 162
Msa1163880 MtrunA17_Chr4g0044421 58.065 124 51 1 3 125 2 125 1.67e-47 156
Msa1163880 MtrunA17_Chr3g0135311 55.303 132 58 1 1 131 1 132 4.92e-47 160
Msa1163880 MtrunA17_Chr1g0152011 59.829 117 46 1 1 116 1 117 8.90e-47 159
Msa1163880 MtrunA17_Chr8g0342541 57.759 116 49 0 1 116 1 116 1.02e-46 159
Msa1163880 MtrunA17_Chr5g0417821 65.421 107 37 0 10 116 5 111 1.88e-46 157
Msa1163880 MtrunA17_Chr8g0342521 57.759 116 49 0 1 116 1 116 4.18e-46 157
Msa1163880 MtrunA17_Chr4g0028311 59.829 117 46 1 1 116 1 117 5.09e-46 157
Msa1163880 MtrunA17_Chr8g0387421 56.897 116 50 0 1 116 1 116 2.01e-45 155
Msa1163880 MtrunA17_Chr4g0072751 62.162 111 41 1 1 110 1 111 7.09e-45 154
Msa1163880 MtrunA17_Chr6g0470971 39.738 229 110 5 4 217 6 221 2.33e-44 151
Msa1163880 MtrunA17_Chr6g0450101 55.906 127 54 1 1 125 1 127 2.42e-44 149
Msa1163880 MtrunA17_Chr6g0487491 49.032 155 63 3 1 139 1 155 3.01e-44 150
Msa1163880 MtrunA17_Chr7g0264641 54.098 122 55 1 1 121 1 122 4.89e-44 150
Msa1163880 MtrunA17_Chr5g0397231 60.185 108 43 0 1 108 1 108 7.13e-44 151
Msa1163880 MtrunA17_Chr2g0327351 60.360 111 43 1 1 110 1 111 7.37e-44 151
Msa1163880 MtrunA17_Chr4g0054391 39.831 236 124 5 1 221 1 233 1.68e-43 149
Msa1163880 MtrunA17_Chr8g0354661 63.462 104 38 0 12 115 37 140 3.08e-43 154
Msa1163880 MtrunA17_Chr4g0042611 68.182 88 28 0 1 88 1 88 3.09e-43 142
Msa1163880 MtrunA17_Chr8g0342481 56.410 117 50 1 1 116 1 117 4.53e-43 151
Msa1163880 MtrunA17_Chr4g0032401 61.905 105 40 0 12 116 17 121 8.90e-43 148
Msa1163880 MtrunA17_Chr1g0203441 58.120 117 48 1 1 116 1 117 1.40e-42 146
Msa1163880 MtrunA17_Chr7g0228231 61.682 107 41 0 12 118 14 120 1.68e-42 144
Msa1163880 MtrunA17_Chr5g0434911 56.364 110 48 0 7 116 16 125 3.78e-42 145
Msa1163880 MtrunA17_Chr2g0328771 60.952 105 41 0 12 116 20 124 4.05e-42 146
Msa1163880 MtrunA17_Chr3g0088461 61.111 108 42 0 9 116 19 126 4.98e-42 147
Msa1163880 MtrunA17_Chr5g0434931 58.491 106 44 0 11 116 34 139 5.44e-42 145
Msa1163880 MtrunA17_Chr1g0154031 61.538 104 40 0 12 115 76 179 6.08e-42 148
Msa1163880 MtrunA17_Chr1g0186061 59.223 103 42 0 13 115 21 123 9.99e-42 144
Msa1163880 MtrunA17_Chr3g0099131 57.265 117 46 1 12 124 41 157 1.24e-41 149
Msa1163880 MtrunA17_Chr4g0055981 55.462 119 53 0 9 127 52 170 1.54e-41 142
Msa1163880 MtrunA17_Chr1g0168661 60.194 103 41 0 13 115 22 124 1.61e-41 143
Msa1163880 MtrunA17_Chr7g0220341 56.522 115 48 1 10 122 23 137 3.94e-41 142
Msa1163880 MtrunA17_Chr1g0209661 60.748 107 42 0 12 118 27 133 4.54e-41 143
Msa1163880 MtrunA17_Chr5g0434831 59.434 106 43 0 11 116 6 111 8.30e-41 139
Msa1163880 MtrunA17_Chr3g0080861 59.615 104 42 0 12 115 37 140 9.66e-41 147
Msa1163880 MtrunA17_Chr2g0294811 64.130 92 33 0 1 92 1 92 1.38e-40 136
Msa1163880 MtrunA17_Chr8g0343831 61.165 103 40 0 14 116 10 112 2.12e-40 140
Msa1163880 MtrunA17_Chr8g0360111 59.804 102 41 0 11 112 24 125 2.42e-40 140
Msa1163880 MtrunA17_Chr1g0194291 57.407 108 46 0 11 118 20 127 4.26e-40 139
Msa1163880 MtrunA17_Chr1g0180391 50.350 143 65 2 12 151 19 158 5.43e-40 138
Msa1163880 MtrunA17_Chr7g0228991 57.547 106 45 0 11 116 28 133 1.05e-39 139
Msa1163880 MtrunA17_Chr2g0322521 58.879 107 44 0 9 115 26 132 1.70e-39 141
Msa1163880 MtrunA17_Chr1g0194301 50.407 123 61 0 8 130 29 151 1.77e-39 138
Msa1163880 MtrunA17_Chr7g0240821 60.000 100 40 0 17 116 6 105 2.16e-39 137
Msa1163880 MtrunA17_Chr5g0434841 57.547 106 45 0 11 116 19 124 1.09e-38 137
Msa1163880 MtrunA17_Chr7g0247131 76.712 73 17 0 44 116 10 82 3.18e-37 132
Msa1163880 MtrunA17_Chr4g0068921 59.048 105 43 0 10 114 22 126 1.67e-36 128
Msa1163880 MtrunA17_Chr2g0327821 40.000 160 90 1 12 165 6 165 4.33e-36 128
Msa1163880 MtrunA17_Chr5g0395221 62.500 88 33 0 1 88 1 88 1.42e-35 122
Msa1163880 MtrunA17_Chr2g0293911 55.856 111 49 0 8 118 20 130 1.52e-35 129
Msa1163880 MtrunA17_Chr4g0030881 50.435 115 50 1 13 120 8 122 4.79e-35 126
Msa1163880 MtrunA17_Chr2g0323321 60.870 92 35 1 1 92 1 91 5.90e-35 122
Msa1163880 MtrunA17_Chr1g0192411 51.887 106 51 0 10 115 10 115 1.25e-34 129
Msa1163880 MtrunA17_Chr8g0342511 57.471 87 37 0 1 87 1 87 5.59e-33 116
Msa1163880 MtrunA17_Chr8g0342531 58.333 84 35 0 6 89 6 89 1.13e-32 117
Msa1163880 MtrunA17_Chr8g0334881 50.000 106 51 2 12 116 10 114 2.66e-32 120
Msa1163880 MtrunA17_Chr4g0013361 42.857 126 70 2 8 132 6 130 3.79e-32 120
Msa1163880 MtrunA17_Chr5g0440781 48.544 103 52 1 13 114 13 115 1.16e-31 115
Msa1163880 MtrunA17_Chr3g0099141 57.831 83 35 0 12 94 40 122 3.82e-31 112
Msa1163880 MtrunA17_Chr5g0440761 48.544 103 52 1 13 114 13 115 5.10e-31 116
Msa1163880 MtrunA17_Chr5g0441141 48.544 103 52 1 13 114 13 115 6.28e-31 116
Msa1163880 MtrunA17_Chr8g0342461 55.556 90 39 1 1 89 1 90 1.71e-30 111
Msa1163880 MtrunA17_Chr8g0342471 54.444 90 40 1 1 89 1 90 6.28e-30 109
Msa1163880 MtrunA17_Chr5g0441131 35.714 182 87 5 13 186 10 169 8.95e-30 110
Msa1163880 MtrunA17_Chr4g0008551 50.485 103 48 2 14 115 38 138 1.02e-27 109
Msa1163880 MtrunA17_Chr6g0454921 48.148 108 55 1 8 115 9 115 1.15e-27 105
Msa1163880 MtrunA17_Chr3g0133601 47.664 107 55 1 9 115 32 137 1.26e-27 106
Msa1163880 MtrunA17_Chr7g0229101 65.714 70 24 0 44 113 4 73 2.22e-27 105
Msa1163880 MtrunA17_Chr7g0238631 50.476 105 51 1 12 116 111 214 6.50e-27 109
Msa1163880 MtrunA17_Chr7g0238631 36.000 100 62 2 14 112 61 159 1.87e-13 70.1
Msa1163880 MtrunA17_Chr5g0434901 66.667 66 22 0 48 113 9 74 8.11e-27 100
Msa1163880 MtrunA17_Chr4g0053431 48.113 106 46 2 14 115 5 105 1.13e-26 104
Msa1163880 MtrunA17_Chr3g0139671 47.619 105 54 1 12 116 83 186 1.77e-26 108
Msa1163880 MtrunA17_Chr3g0139671 37.000 100 61 2 14 112 33 131 1.42e-14 73.6
Msa1163880 MtrunA17_Chr7g0229131 53.409 88 41 0 44 131 4 91 3.31e-26 100
Msa1163880 MtrunA17_Chr5g0401731 47.222 108 56 1 8 115 9 115 5.84e-26 103
Msa1163880 MtrunA17_Chr1g0157731 47.619 105 54 1 12 116 89 192 6.07e-26 107
Msa1163880 MtrunA17_Chr1g0157731 37.000 100 61 2 14 112 39 137 3.58e-14 72.4
Msa1163880 MtrunA17_Chr5g0429661 43.443 122 57 3 12 132 120 230 4.30e-25 102
Msa1163880 MtrunA17_Chr3g0117511 37.241 145 85 3 8 152 177 315 6.40e-25 102
Msa1163880 MtrunA17_Chr6g0480581 46.535 101 53 1 14 114 4 103 1.23e-24 98.6
Msa1163880 MtrunA17_Chr5g0425591 48.780 82 41 1 13 93 10 91 2.01e-24 94.0
Msa1163880 MtrunA17_Chr7g0228531 29.317 249 142 6 10 258 216 430 2.11e-24 101
Msa1163880 MtrunA17_Chr4g0058991 39.041 146 81 4 8 152 203 341 2.72e-24 101
Msa1163880 MtrunA17_Chr6g0453751 47.826 92 39 2 11 93 19 110 9.00e-23 90.9
Msa1163880 MtrunA17_Chr5g0417621 39.831 118 66 2 14 131 134 246 1.49e-22 96.3
Msa1163880 MtrunA17_Chr3g0093811 54.667 75 34 0 44 118 14 88 9.76e-22 91.7
Msa1163880 MtrunA17_Chr6g0460671 38.931 131 72 3 14 144 99 221 2.08e-21 92.0
Msa1163880 MtrunA17_Chr4g0042501 43.689 103 55 2 14 115 105 205 2.37e-21 92.4
Msa1163880 MtrunA17_Chr5g0437321 44.444 99 54 1 14 112 19 116 5.31e-21 90.1
Msa1163880 MtrunA17_Chr5g0397841 47.423 97 50 1 12 108 108 203 5.52e-21 92.0
Msa1163880 MtrunA17_Chr7g0228481 41.176 119 67 3 10 128 216 331 1.30e-20 90.5
Msa1163880 MtrunA17_Chr6g0460661 40.496 121 67 2 14 134 16 131 4.04e-20 84.7
Msa1163880 MtrunA17_Chr7g0254261 28.125 224 146 6 14 228 89 306 8.79e-20 87.4
Msa1163880 MtrunA17_Chr3g0125801 43.137 102 57 1 14 115 16 116 1.36e-19 86.3
Msa1163880 MtrunA17_Chr7g0228401 44.186 86 47 1 25 110 290 374 3.50e-19 86.7
Msa1163880 MtrunA17_Chr5g0416341 36.029 136 85 2 17 151 29 163 2.63e-18 84.0
Msa1163880 MtrunA17_Chr7g0238651 39.604 101 59 1 17 115 10 110 3.42e-18 83.2
Msa1163880 MtrunA17_Chr1g0177901 42.529 87 49 1 24 110 4 89 4.39e-18 80.5
Msa1163880 MtrunA17_Chr7g0233061 40.179 112 57 5 14 120 180 286 2.97e-17 80.5
Msa1163880 MtrunA17_Chr7g0247141 62.500 48 17 1 1 47 1 48 9.43e-17 72.8
Msa1163880 MtrunA17_Chr5g0434871 67.442 43 14 0 74 116 2 44 7.62e-16 70.5
Msa1163880 MtrunA17_Chr8g0362231 35.965 114 69 2 17 130 25 134 2.61e-15 75.1
Msa1163880 MtrunA17_Chr1g0193901 45.238 84 44 2 12 93 11 94 5.84e-13 63.9
Msa1163880 MtrunA17_Chr1g0193891 45.238 84 44 2 12 93 11 94 5.84e-13 63.9
Msa1163880 MtrunA17_Chr1g0193871 45.238 84 44 2 12 93 11 94 5.84e-13 63.9
Msa1163880 MtrunA17_Chr1g0193881 45.238 84 44 2 12 93 11 94 5.84e-13 63.9
Msa1163880 MtrunA17_Chr2g0322831 58.974 39 16 0 70 108 34 72 1.16e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163880 AT3G23250.1 49.488 293 111 8 1 267 1 282 1.12e-84 255
Msa1163880 AT2G31180.1 48.387 279 104 7 1 269 1 249 3.41e-81 244
Msa1163880 AT1G06180.1 50.973 257 95 7 1 255 1 228 2.58e-77 235
Msa1163880 AT3G02940.2 74.576 118 30 0 1 118 1 118 4.10e-64 203
Msa1163880 AT3G02940.1 74.576 118 30 0 1 118 1 118 7.60e-64 203
Msa1163880 AT3G02940.3 74.576 118 30 0 1 118 1 118 7.60e-64 203
Msa1163880 AT5G16770.4 74.576 118 30 0 1 118 1 118 2.04e-63 202
Msa1163880 AT5G16770.3 74.576 118 30 0 1 118 1 118 2.04e-63 202
Msa1163880 AT3G61250.1 73.276 116 31 0 1 116 1 116 2.95e-63 201
Msa1163880 AT5G16770.1 74.576 118 30 0 1 118 1 118 5.08e-63 201
Msa1163880 AT5G16770.2 74.576 118 30 0 1 118 1 118 5.08e-63 201
Msa1163880 AT1G16490.1 73.913 115 30 0 2 116 4 118 8.81e-63 199
Msa1163880 AT1G79180.1 72.034 118 33 0 2 119 4 121 1.73e-62 199
Msa1163880 AT4G05100.1 72.650 117 31 1 1 116 1 117 5.48e-61 196
Msa1163880 AT4G21440.1 70.690 116 34 0 1 116 1 116 6.87e-61 196
Msa1163880 AT1G56160.1 73.043 115 31 0 2 116 4 118 2.08e-60 193
Msa1163880 AT4G28110.1 70.690 116 34 0 1 116 1 116 6.52e-60 191
Msa1163880 AT3G01140.2 65.152 132 41 1 1 127 1 132 1.34e-58 190
Msa1163880 AT5G16600.1 51.337 187 72 3 1 175 1 180 1.55e-58 189
Msa1163880 AT5G15310.1 69.828 116 35 0 1 116 1 116 3.27e-58 189
Msa1163880 AT5G15310.4 69.828 116 35 0 1 116 1 116 3.64e-58 186
Msa1163880 AT5G15310.2 69.828 116 35 0 1 116 1 116 4.05e-58 188
Msa1163880 AT5G10280.1 68.644 118 37 0 1 118 1 118 4.28e-58 188
Msa1163880 AT5G65230.1 69.492 118 36 0 1 118 1 118 2.38e-57 186
Msa1163880 AT4G12350.1 70.690 116 34 0 1 116 1 116 5.98e-57 184
Msa1163880 AT2G16720.1 52.410 166 67 2 1 154 1 166 8.44e-57 183
Msa1163880 AT3G13540.1 67.257 113 37 0 4 116 15 127 1.00e-56 182
Msa1163880 AT4G22680.1 69.828 116 35 0 1 116 1 116 1.56e-56 182
Msa1163880 AT1G34670.1 68.644 118 37 0 1 118 1 118 1.80e-56 185
Msa1163880 AT4G09460.1 57.432 148 56 2 1 142 1 147 3.22e-56 181
Msa1163880 AT5G49330.1 67.241 116 38 0 1 116 1 116 4.15e-56 184
Msa1163880 AT1G22640.1 65.517 116 40 0 1 116 1 116 5.45e-56 181
Msa1163880 AT1G66230.1 69.828 116 35 0 1 116 1 116 7.04e-56 181
Msa1163880 AT3G62610.1 68.966 116 36 0 1 116 1 116 1.17e-55 182
Msa1163880 AT1G79180.2 56.291 151 33 1 2 119 4 154 1.29e-55 182
Msa1163880 AT3G01140.1 63.636 132 43 1 1 127 44 175 2.05e-55 183
Msa1163880 AT4G38620.1 66.379 116 39 0 1 116 1 116 2.07e-55 180
Msa1163880 AT3G12820.1 70.175 114 34 0 3 116 5 118 4.39e-55 178
Msa1163880 AT1G35515.1 64.655 116 41 0 1 116 1 116 8.85e-55 176
Msa1163880 AT1G08810.1 64.655 116 41 0 1 116 1 116 1.94e-54 177
Msa1163880 AT5G62470.2 64.655 116 41 0 1 116 1 116 2.64e-54 179
Msa1163880 AT1G74650.1 65.517 116 40 0 1 116 1 116 3.34e-54 178
Msa1163880 AT5G60890.1 55.333 150 62 1 1 145 1 150 3.62e-54 177
Msa1163880 AT2G47460.1 66.379 116 39 0 1 116 1 116 7.95e-54 179
Msa1163880 AT4G34990.1 67.241 116 38 0 1 116 1 116 8.54e-54 176
Msa1163880 AT3G47600.1 63.793 116 42 0 1 116 1 116 2.57e-53 176
Msa1163880 AT5G62470.1 64.655 116 40 1 1 116 1 115 6.18e-53 176
Msa1163880 AT3G28910.1 62.903 124 45 1 1 123 1 124 1.08e-52 174
Msa1163880 AT1G18570.1 65.812 117 39 1 1 116 1 117 1.22e-52 175
Msa1163880 AT5G61420.2 66.379 116 39 0 1 116 1 116 3.03e-52 174
Msa1163880 AT5G07690.1 66.379 116 39 0 1 116 1 116 7.79e-52 172
Msa1163880 AT4G17785.2 63.866 119 42 1 1 118 1 119 9.39e-52 172
Msa1163880 AT4G01680.3 64.655 116 41 0 1 116 1 116 9.66e-52 169
Msa1163880 AT4G17785.1 63.866 119 42 1 1 118 1 119 1.37e-51 172
Msa1163880 AT1G09540.1 41.905 210 111 2 1 206 1 203 2.23e-51 172
Msa1163880 AT1G74080.1 64.655 116 41 0 1 116 1 116 3.00e-51 171
Msa1163880 AT5G14340.1 56.643 143 51 1 1 132 13 155 3.39e-51 169
Msa1163880 AT4G01680.1 64.655 116 41 0 1 116 1 116 3.80e-51 171
Msa1163880 AT5G07700.1 50.000 174 80 2 1 168 1 173 1.66e-50 169
Msa1163880 AT5G07700.2 50.000 174 80 2 1 168 1 173 1.66e-50 169
Msa1163880 AT5G54230.1 63.793 116 42 0 1 116 1 116 2.92e-50 168
Msa1163880 AT1G57560.2 50.299 167 66 4 1 150 1 167 6.13e-50 166
Msa1163880 AT1G57560.1 62.069 116 44 0 1 116 1 116 6.81e-50 167
Msa1163880 AT5G26660.1 63.793 116 42 0 1 116 1 116 1.01e-49 167
Msa1163880 AT5G62320.1 53.061 147 57 2 2 136 3 149 1.39e-49 164
Msa1163880 AT3G13890.2 60.345 116 46 0 1 116 1 116 6.99e-49 165
Msa1163880 AT5G56110.1 62.069 116 44 0 1 116 1 116 9.02e-49 164
Msa1163880 AT4G37780.1 58.678 121 49 1 1 120 1 121 9.84e-49 164
Msa1163880 AT5G57620.1 59.200 125 50 1 1 124 1 125 1.35e-48 164
Msa1163880 AT4G01680.2 58.594 128 41 1 1 116 1 128 1.25e-47 162
Msa1163880 AT3G49690.1 59.350 123 49 1 1 122 1 123 1.37e-47 160
Msa1163880 AT5G65790.1 59.350 123 49 1 1 122 1 123 2.65e-47 162
Msa1163880 AT5G14750.1 62.500 104 39 0 13 116 17 120 9.76e-47 155
Msa1163880 AT5G35550.1 60.684 117 46 0 12 128 14 130 1.08e-46 157
Msa1163880 AT5G40330.1 60.550 109 43 0 13 121 13 121 1.70e-46 155
Msa1163880 AT5G23000.1 58.974 117 47 1 1 116 1 117 2.53e-46 158
Msa1163880 AT3G13890.1 56.000 125 46 1 1 116 1 125 8.90e-46 157
Msa1163880 AT1G63910.1 54.472 123 56 0 1 123 1 123 1.35e-45 157
Msa1163880 AT3G12720.1 57.658 111 47 0 6 116 16 126 1.81e-45 155
Msa1163880 AT1G74430.1 55.303 132 54 1 1 127 1 132 2.53e-45 154
Msa1163880 AT2G32460.1 58.824 119 45 1 8 122 14 132 1.22e-44 157
Msa1163880 AT2G36890.1 59.829 117 46 1 1 116 1 117 1.41e-44 152
Msa1163880 AT2G36890.2 59.829 117 46 1 1 116 42 158 2.45e-44 153
Msa1163880 AT2G32460.2 59.483 116 43 1 11 122 5 120 2.63e-44 156
Msa1163880 AT3G27920.1 40.500 200 103 2 13 201 15 209 4.24e-44 149
Msa1163880 AT1G18710.1 58.475 118 49 0 1 118 1 118 1.15e-43 149
Msa1163880 AT3G28470.1 56.364 110 48 0 1 110 1 110 2.02e-43 150
Msa1163880 AT3G08500.1 62.037 108 41 0 9 116 27 134 1.85e-42 148
Msa1163880 AT3G27810.1 60.185 108 43 0 12 119 20 127 2.40e-42 144
Msa1163880 AT5G06100.1 59.048 105 43 0 11 115 31 135 2.78e-42 150
Msa1163880 AT5G40350.1 60.952 105 41 0 12 116 17 121 4.23e-42 144
Msa1163880 AT5G12870.1 61.905 105 40 0 12 116 18 122 4.66e-42 145
Msa1163880 AT3G24310.1 58.772 114 45 1 11 122 17 130 8.82e-42 144
Msa1163880 AT3G48920.1 58.182 110 46 0 13 122 19 128 9.57e-42 144
Msa1163880 AT5G06100.5 59.048 105 43 0 11 115 31 135 1.11e-41 150
Msa1163880 AT5G06100.2 59.048 105 43 0 11 115 31 135 1.11e-41 150
Msa1163880 AT5G06100.3 59.048 105 43 0 11 115 31 135 1.11e-41 150
Msa1163880 AT5G06100.4 59.048 105 43 0 11 115 31 135 1.11e-41 150
Msa1163880 AT3G30210.1 46.575 146 72 1 11 156 26 165 1.45e-41 144
Msa1163880 AT4G13480.1 62.136 103 39 0 13 115 7 109 1.72e-41 143
Msa1163880 AT3G01530.1 57.798 109 46 0 8 116 21 129 2.54e-41 141
Msa1163880 AT3G23250.2 41.277 235 101 8 59 267 2 225 3.83e-41 142
Msa1163880 AT5G52600.1 57.692 104 44 0 12 115 12 115 7.59e-41 140
Msa1163880 AT1G66370.1 56.522 115 46 1 1 115 1 111 1.18e-40 141
Msa1163880 AT4G26930.1 59.223 103 42 0 12 114 19 121 1.46e-40 144
Msa1163880 AT5G55020.1 60.748 107 42 0 12 118 26 132 1.74e-40 147
Msa1163880 AT3G11440.2 56.731 104 45 0 12 115 41 144 5.55e-40 144
Msa1163880 AT2G47190.1 56.731 104 45 0 12 115 20 123 1.42e-39 139
Msa1163880 AT3G11440.3 56.731 104 45 0 12 115 41 144 1.95e-39 144
Msa1163880 AT3G11440.4 56.731 104 45 0 12 115 41 144 1.95e-39 144
Msa1163880 AT3G11440.1 56.731 104 45 0 12 115 41 144 1.95e-39 144
Msa1163880 AT4G25560.1 57.407 108 46 0 13 120 11 118 7.73e-39 137
Msa1163880 AT2G26960.1 55.660 106 47 0 9 114 17 122 1.60e-38 140
Msa1163880 AT1G25340.1 58.491 106 44 0 13 118 19 124 1.64e-38 136
Msa1163880 AT1G68320.1 57.018 114 49 0 12 125 19 132 2.56e-38 136
Msa1163880 AT3G46130.1 55.238 105 47 0 11 115 8 112 6.57e-38 134
Msa1163880 AT5G59780.3 55.340 103 46 0 13 115 9 111 1.03e-37 133
Msa1163880 AT5G52260.1 58.333 108 45 0 13 120 13 120 4.24e-37 132
Msa1163880 AT1G66380.1 60.000 105 42 0 11 115 7 111 5.15e-37 128
Msa1163880 AT1G56650.1 60.952 105 41 0 11 115 7 111 5.91e-37 131
Msa1163880 AT1G48000.1 55.340 103 46 0 12 114 32 134 6.94e-37 131
Msa1163880 AT3G06490.1 58.559 111 46 0 8 118 15 125 1.70e-36 132
Msa1163880 AT3G53200.1 55.769 104 46 0 12 115 9 112 2.49e-36 129
Msa1163880 AT5G49620.1 56.757 111 48 0 8 118 22 132 2.36e-35 129
Msa1163880 AT3G12820.2 78.571 70 15 0 47 116 1 70 2.86e-35 125
Msa1163880 AT1G66390.1 59.048 105 43 0 11 115 7 111 3.68e-35 127
Msa1163880 AT5G14750.3 69.231 78 21 1 39 116 12 86 4.55e-35 124
Msa1163880 AT1G25340.2 55.660 106 42 1 13 118 19 119 3.98e-34 125
Msa1163880 AT1G25340.3 55.660 106 42 1 13 118 19 119 8.09e-34 125
Msa1163880 AT5G35550.2 65.476 84 29 0 45 128 50 133 9.87e-34 123
Msa1163880 AT5G26660.2 71.622 74 21 0 43 116 12 85 1.69e-32 121
Msa1163880 AT3G60460.1 47.414 116 59 2 7 121 6 120 3.81e-32 120
Msa1163880 AT5G49620.2 50.400 125 48 1 8 118 22 146 9.28e-32 119
Msa1163880 AT2G26950.1 39.759 166 89 3 9 163 13 178 4.94e-31 119
Msa1163880 AT3G47600.2 53.636 110 47 3 45 154 39 144 2.44e-29 113
Msa1163880 AT3G27810.2 62.667 75 28 0 45 119 4 78 1.37e-28 107
Msa1163880 AT5G40350.2 63.889 72 26 0 45 116 5 76 6.60e-28 105
Msa1163880 AT3G53200.2 63.014 73 27 0 43 115 7 79 1.96e-27 105
Msa1163880 AT5G02320.1 41.429 140 77 2 12 151 125 259 3.67e-27 110
Msa1163880 AT5G02320.1 35.577 104 65 2 10 112 71 173 1.08e-13 71.2
Msa1163880 AT5G02320.2 41.429 140 77 2 12 151 125 259 3.67e-27 110
Msa1163880 AT5G02320.2 35.577 104 65 2 10 112 71 173 1.08e-13 71.2
Msa1163880 AT5G02320.3 41.429 140 77 2 12 151 65 199 4.49e-27 109
Msa1163880 AT5G02320.3 35.577 104 65 2 10 112 11 113 1.44e-13 70.5
Msa1163880 AT3G46130.3 62.500 72 27 0 44 115 9 80 7.56e-27 104
Msa1163880 AT5G59780.2 61.644 73 28 0 43 115 18 90 1.16e-26 103
Msa1163880 AT3G46130.4 61.644 73 28 0 43 115 18 90 1.50e-26 103
Msa1163880 AT3G09230.1 34.848 198 101 5 14 200 55 235 1.83e-26 107
Msa1163880 AT3G09370.3 40.476 168 86 3 12 166 141 307 1.90e-26 108
Msa1163880 AT3G09370.3 37.000 100 61 2 14 112 91 189 1.33e-13 70.9
Msa1163880 AT3G09370.1 40.476 168 86 3 12 166 128 294 2.12e-26 107
Msa1163880 AT3G09370.1 37.000 100 61 2 14 112 78 176 1.35e-13 70.9
Msa1163880 AT3G09370.2 40.476 168 86 3 12 166 133 299 2.16e-26 107
Msa1163880 AT3G09370.2 37.000 100 61 2 14 112 83 181 1.31e-13 70.9
Msa1163880 AT4G18770.1 44.954 109 59 1 8 116 211 318 4.93e-26 106
Msa1163880 AT5G11510.3 47.706 109 48 2 12 116 79 182 7.78e-26 107
Msa1163880 AT5G11510.3 37.000 100 61 2 14 112 29 127 6.80e-15 74.7
Msa1163880 AT5G11510.1 47.706 109 48 2 12 116 79 182 7.78e-26 107
Msa1163880 AT5G11510.1 37.000 100 61 2 14 112 29 127 6.80e-15 74.7
Msa1163880 AT5G11510.4 47.706 109 48 2 12 116 79 182 7.78e-26 107
Msa1163880 AT5G11510.4 37.000 100 61 2 14 112 29 127 6.80e-15 74.7
Msa1163880 AT5G11510.2 47.706 109 48 2 12 116 79 182 1.01e-25 106
Msa1163880 AT5G11510.2 37.000 100 61 2 14 112 29 127 6.91e-15 74.7
Msa1163880 AT5G11510.5 47.706 109 48 2 12 116 79 182 1.03e-25 106
Msa1163880 AT5G11510.5 37.000 100 61 2 14 112 29 127 6.91e-15 74.7
Msa1163880 AT2G23290.1 49.020 102 51 1 14 115 13 113 2.03e-25 102
Msa1163880 AT3G27785.1 30.973 226 122 8 8 231 183 376 5.00e-25 103
Msa1163880 AT1G71030.1 42.742 124 54 4 35 150 4 118 6.59e-25 98.6
Msa1163880 AT3G55730.1 39.726 146 75 3 14 151 56 196 7.43e-25 102
Msa1163880 AT2G39880.1 47.170 106 47 2 14 115 50 150 7.51e-25 102
Msa1163880 AT1G22640.3 70.690 58 17 0 59 116 2 59 8.16e-25 98.6
Msa1163880 AT3G50060.1 46.078 102 54 1 14 115 6 106 8.49e-25 100
Msa1163880 AT1G66380.3 65.278 72 25 0 44 115 7 78 8.61e-25 95.5
Msa1163880 AT5G14750.4 67.797 59 19 0 58 116 1 59 1.33e-24 96.3
Msa1163880 AT5G14750.2 67.797 59 19 0 58 116 1 59 1.33e-24 96.3
Msa1163880 AT1G69560.1 39.062 128 73 2 9 136 102 224 1.51e-24 100
Msa1163880 AT1G69560.2 40.310 129 70 3 9 136 118 240 2.01e-24 100
Msa1163880 AT1G71030.2 45.370 108 43 3 51 150 5 104 2.10e-24 97.1
Msa1163880 AT4G37260.1 44.144 111 61 1 5 115 4 113 2.31e-24 100
Msa1163880 AT1G17950.1 45.283 106 57 1 10 115 1 105 4.27e-24 97.8
Msa1163880 AT4G32730.1 44.762 105 57 1 12 116 85 188 8.93e-24 100
Msa1163880 AT4G32730.1 36.000 100 62 2 14 112 35 133 1.29e-14 73.9
Msa1163880 AT4G32730.5 44.762 105 57 1 12 116 85 188 9.23e-24 100
Msa1163880 AT4G32730.5 36.000 100 62 2 14 112 35 133 1.43e-14 73.9
Msa1163880 AT4G32730.4 44.762 105 57 1 12 116 85 188 9.23e-24 100
Msa1163880 AT4G32730.4 36.000 100 62 2 14 112 35 133 1.43e-14 73.9
Msa1163880 AT4G32730.3 44.762 105 57 1 12 116 85 188 9.23e-24 100
Msa1163880 AT4G32730.3 36.000 100 62 2 14 112 35 133 1.43e-14 73.9
Msa1163880 AT4G32730.2 44.762 105 57 1 12 116 85 188 9.23e-24 100
Msa1163880 AT4G32730.2 36.000 100 62 2 14 112 35 133 1.43e-14 73.9
Msa1163880 AT1G26780.1 42.149 121 63 3 12 131 96 210 1.19e-23 97.4
Msa1163880 AT1G26780.2 40.833 120 66 2 12 131 96 210 1.35e-23 98.6
Msa1163880 AT5G40360.1 40.678 118 62 3 12 129 156 265 1.42e-23 98.6
Msa1163880 AT5G67300.1 46.078 102 54 1 14 115 6 106 1.59e-23 97.4
Msa1163880 AT5G58850.1 38.889 126 67 2 12 137 103 218 5.70e-23 97.8
Msa1163880 AT1G66380.2 54.878 82 37 0 11 92 7 88 6.01e-23 90.9
Msa1163880 AT4G33450.1 41.026 117 63 2 3 119 13 123 1.29e-22 94.0
Msa1163880 AT1G18960.1 43.636 110 59 2 14 123 10 116 1.59e-22 94.7
Msa1163880 AT1G73410.1 48.113 106 52 2 14 118 6 109 5.10e-22 92.0
Msa1163880 AT5G11050.1 31.980 197 119 5 14 206 105 290 8.48e-22 94.4
Msa1163880 AT1G73410.2 48.113 106 52 2 14 118 6 109 1.43e-21 90.1
Msa1163880 AT3G29020.1 40.000 105 62 1 14 118 65 168 1.71e-21 90.5
Msa1163880 AT3G29020.2 40.000 105 62 1 14 118 67 170 4.86e-21 90.9
Msa1163880 AT5G17800.1 40.367 109 64 1 14 122 93 200 6.35e-21 90.5
Msa1163880 AT2G37630.1 25.735 272 163 7 17 258 7 269 2.23e-19 87.0
Msa1163880 AT4G00540.2 41.818 110 60 2 12 118 101 209 1.58e-18 84.7
Msa1163880 AT4G00540.2 36.449 107 60 3 14 112 46 152 1.71e-12 67.4
Msa1163880 AT4G00540.1 41.818 110 60 2 12 118 99 207 2.57e-18 84.3
Msa1163880 AT4G00540.1 36.449 107 60 3 14 112 44 150 2.53e-12 66.6
Msa1163880 AT5G39700.1 40.625 96 56 1 15 110 57 151 2.60e-17 78.2
Msa1163880 AT2G25230.1 40.517 116 64 4 7 121 19 130 3.01e-17 79.0
Msa1163880 AT1G14350.2 34.559 136 83 2 17 152 28 157 5.18e-17 80.5
Msa1163880 AT1G14350.1 34.559 136 83 2 17 152 28 157 5.18e-17 80.5
Msa1163880 AT2G02820.3 39.394 99 59 1 17 115 33 130 8.20e-17 79.3
Msa1163880 AT2G02820.1 39.394 99 59 1 17 115 33 130 1.43e-16 79.3
Msa1163880 AT2G02820.2 39.394 99 59 1 17 115 33 130 1.72e-16 79.3
Msa1163880 AT4G25560.2 60.000 50 20 0 71 120 3 52 2.02e-14 70.9
Msa1163880 AT5G40430.1 33.333 114 72 3 7 120 47 156 3.05e-13 68.2
Msa1163880 AT5G59780.1 58.696 46 19 0 70 115 1 46 8.30e-13 65.5
Msa1163880 AT3G46130.2 58.696 46 19 0 70 115 1 46 1.30e-12 65.5
Msa1163880 AT1G16490.2 75.000 40 8 1 77 116 12 49 1.51e-12 65.5
Msa1163880 AT3G18100.1 31.783 129 82 2 13 141 545 667 3.71e-11 63.5
Msa1163880 AT3G18100.3 31.783 129 82 2 13 141 497 619 4.36e-11 63.5
Msa1163880 AT3G18100.4 31.783 129 82 2 13 141 384 506 5.05e-11 63.2
Msa1163880 AT1G74650.3 66.667 39 13 0 78 116 2 40 5.41e-11 61.6
Msa1163880 AT3G18100.2 31.783 129 82 2 13 141 332 454 5.74e-11 63.2
Msa1163880 AT3G28910.2 59.574 47 18 1 78 123 2 48 7.14e-11 61.2
Msa1163880 AT1G14350.3 35.052 97 58 1 56 152 23 114 8.34e-11 62.0
Msa1163880 AT1G14350.4 35.052 97 58 1 56 152 23 114 8.34e-11 62.0

Find 57 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAAAACAACACATAATT+TGG 0.122967 7_4:-55288435 Msa1163880:five_prime_UTR
TATTGCATCCTCTTCTTCTT+TGG 0.213171 7_4:+55288046 None:intergenic
ATTTATTAGTTACTACAAAA+TGG 0.214423 7_4:-55288412 Msa1163880:exon
ATCCAAATTATGTGTTGTTT+TGG 0.230063 7_4:+55288433 None:intergenic
AGCTCCATGCTGTGAGAAAA+TGG 0.244008 7_4:-55288385 Msa1163880:CDS
TTTGTTCCTGTTTGGTGTCT+TGG 0.278621 7_4:+55286857 None:intergenic
TTTGGTGTCTTGGTCTGAAT+TGG 0.308015 7_4:+55286867 None:intergenic
TGCATCAAATGTTGGGAAAC+AGG 0.310941 7_4:-55288016 Msa1163880:intron
CTTGTTATTCCTAGATTGTA+TGG 0.311820 7_4:-55286452 Msa1163880:three_prime_UTR
ACTCCTTCTTCTGTTCCTAA+TGG 0.324020 7_4:+55286604 None:intergenic
ATTGAGTTTATGCCAAGATA+TGG 0.347920 7_4:-55286566 Msa1163880:CDS
ATCAATTTGCATCAAATGTT+GGG 0.356250 7_4:-55288023 Msa1163880:CDS
TATCAATTTCAAGCTCCATT+AGG 0.362773 7_4:-55286619 Msa1163880:CDS
ATCAATCACATAAACACTTA+TGG 0.369204 7_4:-55288318 Msa1163880:CDS
AATCAATTTGCATCAAATGT+TGG 0.410701 7_4:-55288024 Msa1163880:CDS
ATCTGAAACCCGATATCAAA+AGG 0.412296 7_4:-55288079 Msa1163880:CDS
TATGCCAAGATATGGACTTC+TGG 0.412631 7_4:-55286558 Msa1163880:CDS
AAAATTGTACCAGCTTGTTT+GGG 0.417453 7_4:+55288273 None:intergenic
AACAAAATCATGAAGATGAT+AGG 0.428670 7_4:-55286840 Msa1163880:CDS
GCTCCATGCTGTGAGAAAAT+GGG 0.439252 7_4:-55288384 Msa1163880:CDS
AATATGCCAACTTGATCAAA+AGG 0.440628 7_4:+55288497 None:intergenic
CATTGAGACAAATGGTGTTA+TGG 0.440840 7_4:-55286659 Msa1163880:CDS
ACACTTATGGTCATTCCAAT+TGG 0.447001 7_4:-55288305 Msa1163880:CDS
TTTATTAGTTACTACAAAAT+GGG 0.447659 7_4:-55288411 Msa1163880:exon
GGCACACCCATTTGAAGAAA+AGG 0.451156 7_4:-55286972 Msa1163880:CDS
TTTGGGAAGAGCACGCCAAT+TGG 0.452512 7_4:+55288290 None:intergenic
ATACAAGTTCCATACAATCT+AGG 0.460971 7_4:+55286443 None:intergenic
GAGAAAATGGGGTTGAAGAA+AGG 0.466929 7_4:-55288372 Msa1163880:CDS
ACTATTGCAGCAAGGTTACC+TGG 0.477392 7_4:-55287024 Msa1163880:CDS
GGTGTCTTGGTCTGAATTGG+AGG 0.483617 7_4:+55286870 None:intergenic
ATCTCGTTATCTGTTCGTCC+AGG 0.483748 7_4:+55287006 None:intergenic
GAACTTGTATGCTCATTCAA+TGG 0.487379 7_4:-55286430 Msa1163880:three_prime_UTR
TACTGTTGTTGTGTTCATGT+TGG 0.490636 7_4:+55286938 None:intergenic
TAATAATGATGTTGTTGCAT+TGG 0.493304 7_4:-55286725 Msa1163880:CDS
CGATCTTCTTCTGTAGTCCA+TGG 0.493447 7_4:+55288348 None:intergenic
AGAAAATGGGGTTGAAGAAA+GGG 0.495895 7_4:-55288371 Msa1163880:CDS
CGTGCCAGAAGTCCATATCT+TGG 0.502555 7_4:+55286554 None:intergenic
TGCTTAGATGCAGAAAATGT+AGG 0.502654 7_4:+55286345 None:intergenic
TTCAGACCAAGACACCAAAC+AGG 0.504694 7_4:-55286863 Msa1163880:CDS
TCTGAAACCCGATATCAAAA+GGG 0.511378 7_4:-55288078 Msa1163880:CDS
AATTCTAGCATTGAGACAAA+TGG 0.516171 7_4:-55286667 Msa1163880:CDS
CGTGCTCTTCCCAAACAAGC+TGG 0.545911 7_4:-55288282 Msa1163880:intron
GCAGAAAATGTAGGCAAATG+TGG 0.546907 7_4:+55286354 None:intergenic
TCAACAGGATTGCTAAGGTG+TGG 0.554823 7_4:-55288131 Msa1163880:intron
GCTCCATTAGGAACAGAAGA+AGG 0.574750 7_4:-55286607 Msa1163880:CDS
AAAGAGTTGCAGATTGCGAT+GGG 0.587500 7_4:-55288108 Msa1163880:CDS
TGGGGTTGAAGAAAGGGCCA+TGG 0.599615 7_4:-55288365 Msa1163880:CDS
TAACTTCACCAAAGAAGAAG+AGG 0.601393 7_4:-55288054 Msa1163880:CDS
GTCGACATGAAAGTCCAACT+TGG 0.605781 7_4:+55286894 None:intergenic
GAAAGAGTTGCAGATTGCGA+TGG 0.612569 7_4:-55288109 Msa1163880:CDS
CTGAAACCCGATATCAAAAG+GGG 0.619562 7_4:-55288077 Msa1163880:CDS
ACAAATGGTGTTATGGACAT+TGG 0.642021 7_4:-55286652 Msa1163880:CDS
CTCCATGCTGTGAGAAAATG+GGG 0.664474 7_4:-55288383 Msa1163880:CDS
CGATGTTTATGCGAGAGCTG+AGG 0.668356 7_4:-55286533 Msa1163880:CDS
AAGTGTTTATGTGATTGATG+AGG 0.675801 7_4:+55288322 None:intergenic
GATGGTCAACTATTGCAGCA+AGG 0.684333 7_4:-55287032 Msa1163880:CDS
GAAAATGTAGGCAAATGTGG+AGG 0.717803 7_4:+55286357 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTCTTTAAATTAGTAA+AGG + chr7_4:55286619-55286638 None:intergenic 10.0%
!!! AGTTTTTTTTTTTTTTTTGA+AGG + chr7_4:55287182-55287201 None:intergenic 10.0%
!!! ATTTTCTCTTTTTTTTTTTA+AGG + chr7_4:55287223-55287242 None:intergenic 10.0%
!!! AAAACAATTTTATTTTACAT+AGG + chr7_4:55287689-55287708 None:intergenic 10.0%
!!! AATTTTCTTTAAATTAGTAA+AGG + chr7_4:55286619-55286638 None:intergenic 10.0%
!!! AGTTTTTTTTTTTTTTTTGA+AGG + chr7_4:55287182-55287201 None:intergenic 10.0%
!!! ATTTTCTCTTTTTTTTTTTA+AGG + chr7_4:55287223-55287242 None:intergenic 10.0%
!!! AAAACAATTTTATTTTACAT+AGG + chr7_4:55287689-55287708 None:intergenic 10.0%
!! ATTTATTAGTTACTACAAAA+TGG - chr7_4:55286442-55286461 Msa1163880:three_prime_UTR 15.0%
!! TTTATTAGTTACTACAAAAT+GGG - chr7_4:55286443-55286462 Msa1163880:three_prime_UTR 15.0%
!! AAAAAAAATGAGAAAAACTT+TGG + chr7_4:55286694-55286713 None:intergenic 15.0%
!!! TTTTTTACAATTTTATCAAC+AGG - chr7_4:55286708-55286727 Msa1163880:CDS 15.0%
!! ATTATAAAATCACATGAATT+TGG + chr7_4:55286939-55286958 None:intergenic 15.0%
!!! GATTTTATAATCTTACTTAA+TGG - chr7_4:55286948-55286967 Msa1163880:CDS 15.0%
!! AAAAAAGAGAAAATGAATAA+TGG - chr7_4:55287229-55287248 Msa1163880:intron 15.0%
!!! TTGATTTATCTTTTGTTTTA+AGG - chr7_4:55287268-55287287 Msa1163880:intron 15.0%
!!! TGATTTATCTTTTGTTTTAA+GGG - chr7_4:55287269-55287288 Msa1163880:intron 15.0%
!! TATTATTAACAATTGTGAAA+TGG - chr7_4:55287535-55287554 Msa1163880:intron 15.0%
!! ATTTATTAGTTACTACAAAA+TGG - chr7_4:55286442-55286461 Msa1163880:three_prime_UTR 15.0%
!! TTTATTAGTTACTACAAAAT+GGG - chr7_4:55286443-55286462 Msa1163880:three_prime_UTR 15.0%
!! AAAAAAAATGAGAAAAACTT+TGG + chr7_4:55286694-55286713 None:intergenic 15.0%
!!! TTTTTTACAATTTTATCAAC+AGG - chr7_4:55286708-55286727 Msa1163880:CDS 15.0%
!! ATTATAAAATCACATGAATT+TGG + chr7_4:55286939-55286958 None:intergenic 15.0%
!!! GATTTTATAATCTTACTTAA+TGG - chr7_4:55286948-55286967 Msa1163880:CDS 15.0%
!! AAAAAAGAGAAAATGAATAA+TGG - chr7_4:55287229-55287248 Msa1163880:intron 15.0%
!!! TTGATTTATCTTTTGTTTTA+AGG - chr7_4:55287268-55287287 Msa1163880:intron 15.0%
!!! TGATTTATCTTTTGTTTTAA+GGG - chr7_4:55287269-55287288 Msa1163880:intron 15.0%
!! TATTATTAACAATTGTGAAA+TGG - chr7_4:55287535-55287554 Msa1163880:intron 15.0%
!! TGATTTAGTCCTAAAAATAT+AGG - chr7_4:55287118-55287137 Msa1163880:intron 20.0%
!! AAGAAAAAAAAATCAACCAA+AGG + chr7_4:55287427-55287446 None:intergenic 20.0%
!!! GTTTTTTTTTTGTCCAATTA+TGG - chr7_4:55287704-55287723 Msa1163880:intron 20.0%
!! ACTAATAAGTTAACCATAAT+TGG + chr7_4:55287720-55287739 None:intergenic 20.0%
!! ATAACGAGATAAAAAATGTA+TGG - chr7_4:55287861-55287880 Msa1163880:intron 20.0%
!! TTGTTTAGACAAAAATAATG+TGG - chr7_4:55288471-55288490 Msa1163880:five_prime_UTR 20.0%
!! TGATTTAGTCCTAAAAATAT+AGG - chr7_4:55287118-55287137 Msa1163880:intron 20.0%
!! AAGAAAAAAAAATCAACCAA+AGG + chr7_4:55287427-55287446 None:intergenic 20.0%
!!! GTTTTTTTTTTGTCCAATTA+TGG - chr7_4:55287704-55287723 Msa1163880:intron 20.0%
!! ACTAATAAGTTAACCATAAT+TGG + chr7_4:55287720-55287739 None:intergenic 20.0%
!! ATAACGAGATAAAAAATGTA+TGG - chr7_4:55287861-55287880 Msa1163880:intron 20.0%
!! TTGTTTAGACAAAAATAATG+TGG - chr7_4:55288471-55288490 Msa1163880:five_prime_UTR 20.0%
! ATCCAAAACAACACATAATT+TGG - chr7_4:55286419-55286438 Msa1163880:three_prime_UTR 25.0%
!!! ATCCAAATTATGTGTTGTTT+TGG + chr7_4:55286424-55286443 None:intergenic 25.0%
! ATCAATCACATAAACACTTA+TGG - chr7_4:55286536-55286555 Msa1163880:CDS 25.0%
! AAATTAGTAAAGGCTTGAAT+TGG + chr7_4:55286609-55286628 None:intergenic 25.0%
! AATCAATTTGCATCAAATGT+TGG - chr7_4:55286830-55286849 Msa1163880:CDS 25.0%
! ATCAATTTGCATCAAATGTT+GGG - chr7_4:55286831-55286850 Msa1163880:CDS 25.0%
!! TGACAAATCAGAACAATTTT+TGG - chr7_4:55286986-55287005 Msa1163880:CDS 25.0%
!! GACAAATCAGAACAATTTTT+GGG - chr7_4:55286987-55287006 Msa1163880:CDS 25.0%
! AGAGAAAATGAATAATGGTT+TGG - chr7_4:55287234-55287253 Msa1163880:intron 25.0%
! AAGCAAAATCATAACAAGAT+TGG - chr7_4:55287292-55287311 Msa1163880:intron 25.0%
! GTAAACCAAATTTCAAAAGT+AGG - chr7_4:55287604-55287623 Msa1163880:intron 25.0%
! TGTGCAGAAAACTAATTAAA+TGG - chr7_4:55287784-55287803 Msa1163880:intron 25.0%
! AAACAAAAAACAAACCAAGT+TGG - chr7_4:55287946-55287965 Msa1163880:intron 25.0%
! AACAAAATCATGAAGATGAT+AGG - chr7_4:55288014-55288033 Msa1163880:intron 25.0%
! TAATAATGATGTTGTTGCAT+TGG - chr7_4:55288129-55288148 Msa1163880:intron 25.0%
!!! TTTAGAAGAGTGTTTTTGTT+TGG - chr7_4:55288535-55288554 Msa1163880:five_prime_UTR 25.0%
! ATCCAAAACAACACATAATT+TGG - chr7_4:55286419-55286438 Msa1163880:three_prime_UTR 25.0%
!!! ATCCAAATTATGTGTTGTTT+TGG + chr7_4:55286424-55286443 None:intergenic 25.0%
! ATCAATCACATAAACACTTA+TGG - chr7_4:55286536-55286555 Msa1163880:CDS 25.0%
! AAATTAGTAAAGGCTTGAAT+TGG + chr7_4:55286609-55286628 None:intergenic 25.0%
! AATCAATTTGCATCAAATGT+TGG - chr7_4:55286830-55286849 Msa1163880:CDS 25.0%
! ATCAATTTGCATCAAATGTT+GGG - chr7_4:55286831-55286850 Msa1163880:CDS 25.0%
!! TGACAAATCAGAACAATTTT+TGG - chr7_4:55286986-55287005 Msa1163880:CDS 25.0%
!! GACAAATCAGAACAATTTTT+GGG - chr7_4:55286987-55287006 Msa1163880:CDS 25.0%
! AGAGAAAATGAATAATGGTT+TGG - chr7_4:55287234-55287253 Msa1163880:intron 25.0%
! AAGCAAAATCATAACAAGAT+TGG - chr7_4:55287292-55287311 Msa1163880:intron 25.0%
! GTAAACCAAATTTCAAAAGT+AGG - chr7_4:55287604-55287623 Msa1163880:intron 25.0%
! TGTGCAGAAAACTAATTAAA+TGG - chr7_4:55287784-55287803 Msa1163880:intron 25.0%
! AAACAAAAAACAAACCAAGT+TGG - chr7_4:55287946-55287965 Msa1163880:intron 25.0%
! AACAAAATCATGAAGATGAT+AGG - chr7_4:55288014-55288033 Msa1163880:intron 25.0%
! TAATAATGATGTTGTTGCAT+TGG - chr7_4:55288129-55288148 Msa1163880:intron 25.0%
AATATGCCAACTTGATCAAA+AGG + chr7_4:55286360-55286379 None:intergenic 30.0%
AAGTGTTTATGTGATTGATG+AGG + chr7_4:55286535-55286554 None:intergenic 30.0%
! AAAATTGTACCAGCTTGTTT+GGG + chr7_4:55286584-55286603 None:intergenic 30.0%
! AAAAATTGTACCAGCTTGTT+TGG + chr7_4:55286585-55286604 None:intergenic 30.0%
! TTTTATCAACAGGATTGCTA+AGG - chr7_4:55286718-55286737 Msa1163880:CDS 30.0%
! TTGCGTGAACCTATATTTTT+AGG + chr7_4:55287130-55287149 None:intergenic 30.0%
AAGATAAATCAAGAGACACT+GGG + chr7_4:55287260-55287279 None:intergenic 30.0%
AAAGATAAATCAAGAGACAC+TGG + chr7_4:55287261-55287280 None:intergenic 30.0%
AATACTACTCCAAAAAGCAA+AGG - chr7_4:55287387-55287406 Msa1163880:intron 30.0%
!! AGAGAAAATCCTTTGCTTTT+TGG + chr7_4:55287399-55287418 None:intergenic 30.0%
CGAATAATATCATACTTTCG+TGG - chr7_4:55287582-55287601 Msa1163880:intron 30.0%
! TTCATGATTTTGTTCCTGTT+TGG + chr7_4:55288008-55288027 None:intergenic 30.0%
! TTGCATTGGATGATGATTTT+TGG - chr7_4:55288143-55288162 Msa1163880:intron 30.0%
! AATTCTAGCATTGAGACAAA+TGG - chr7_4:55288187-55288206 Msa1163880:intron 30.0%
TATCAATTTCAAGCTCCATT+AGG - chr7_4:55288235-55288254 Msa1163880:intron 30.0%
ATTGAGTTTATGCCAAGATA+TGG - chr7_4:55288288-55288307 Msa1163880:CDS 30.0%
!! CTTGTTATTCCTAGATTGTA+TGG - chr7_4:55288402-55288421 Msa1163880:exon 30.0%
ATACAAGTTCCATACAATCT+AGG + chr7_4:55288414-55288433 None:intergenic 30.0%
AATATGCCAACTTGATCAAA+AGG + chr7_4:55286360-55286379 None:intergenic 30.0%
AAGTGTTTATGTGATTGATG+AGG + chr7_4:55286535-55286554 None:intergenic 30.0%
! AAAATTGTACCAGCTTGTTT+GGG + chr7_4:55286584-55286603 None:intergenic 30.0%
! AAAAATTGTACCAGCTTGTT+TGG + chr7_4:55286585-55286604 None:intergenic 30.0%
! TTTTATCAACAGGATTGCTA+AGG - chr7_4:55286718-55286737 Msa1163880:CDS 30.0%
! TTGCGTGAACCTATATTTTT+AGG + chr7_4:55287130-55287149 None:intergenic 30.0%
AAGATAAATCAAGAGACACT+GGG + chr7_4:55287260-55287279 None:intergenic 30.0%
AAAGATAAATCAAGAGACAC+TGG + chr7_4:55287261-55287280 None:intergenic 30.0%
AATACTACTCCAAAAAGCAA+AGG - chr7_4:55287387-55287406 Msa1163880:intron 30.0%
!! AGAGAAAATCCTTTGCTTTT+TGG + chr7_4:55287399-55287418 None:intergenic 30.0%
CGAATAATATCATACTTTCG+TGG - chr7_4:55287582-55287601 Msa1163880:intron 30.0%
! TTCATGATTTTGTTCCTGTT+TGG + chr7_4:55288008-55288027 None:intergenic 30.0%
! TTGCATTGGATGATGATTTT+TGG - chr7_4:55288143-55288162 Msa1163880:intron 30.0%
! AATTCTAGCATTGAGACAAA+TGG - chr7_4:55288187-55288206 Msa1163880:intron 30.0%
TATCAATTTCAAGCTCCATT+AGG - chr7_4:55288235-55288254 Msa1163880:intron 30.0%
ATTGAGTTTATGCCAAGATA+TGG - chr7_4:55288288-55288307 Msa1163880:CDS 30.0%
!! CTTGTTATTCCTAGATTGTA+TGG - chr7_4:55288402-55288421 Msa1163880:exon 30.0%
ATACAAGTTCCATACAATCT+AGG + chr7_4:55288414-55288433 None:intergenic 30.0%
!!! GTGTTGTTTTGGATATTGCA+CGG + chr7_4:55286413-55286432 None:intergenic 35.0%
AGAAAATGGGGTTGAAGAAA+GGG - chr7_4:55286483-55286502 Msa1163880:three_prime_UTR 35.0%
ACACTTATGGTCATTCCAAT+TGG - chr7_4:55286549-55286568 Msa1163880:CDS 35.0%
! ATCTGAAACCCGATATCAAA+AGG - chr7_4:55286775-55286794 Msa1163880:CDS 35.0%
! TCTGAAACCCGATATCAAAA+GGG - chr7_4:55286776-55286795 Msa1163880:CDS 35.0%
! AAGTTACCCCTTTTGATATC+GGG + chr7_4:55286786-55286805 None:intergenic 35.0%
! GAAGTTACCCCTTTTGATAT+CGG + chr7_4:55286787-55286806 None:intergenic 35.0%
TAACTTCACCAAAGAAGAAG+AGG - chr7_4:55286800-55286819 Msa1163880:CDS 35.0%
TATTGCATCCTCTTCTTCTT+TGG + chr7_4:55286811-55286830 None:intergenic 35.0%
TACAGAGCAGAATATTAGCT+AGG + chr7_4:55286893-55286912 None:intergenic 35.0%
GCTAATATTCTGCTCTGTAT+AGG - chr7_4:55286894-55286913 Msa1163880:CDS 35.0%
CATAACAAGATTGGTACAGA+TGG - chr7_4:55287301-55287320 Msa1163880:intron 35.0%
! GGATTTTCTCTTTTCTCCTT+TGG - chr7_4:55287408-55287427 Msa1163880:intron 35.0%
!!! CTCAGCCTACTTTTGAAATT+TGG + chr7_4:55287612-55287631 None:intergenic 35.0%
! TGGTTTAATGATGATGCAGA+TGG - chr7_4:55287804-55287823 Msa1163880:intron 35.0%
!!! TTGTGTTCATGTTGGTTTTG+TGG + chr7_4:55287911-55287930 None:intergenic 35.0%
TACTGTTGTTGTGTTCATGT+TGG + chr7_4:55287919-55287938 None:intergenic 35.0%
! CATTGAGACAAATGGTGTTA+TGG - chr7_4:55288195-55288214 Msa1163880:intron 35.0%
!! ACAAATGGTGTTATGGACAT+TGG - chr7_4:55288202-55288221 Msa1163880:intron 35.0%
GAACTTGTATGCTCATTCAA+TGG - chr7_4:55288424-55288443 Msa1163880:five_prime_UTR 35.0%
TGCTTAGATGCAGAAAATGT+AGG + chr7_4:55288512-55288531 None:intergenic 35.0%
!!! GTGTTGTTTTGGATATTGCA+CGG + chr7_4:55286413-55286432 None:intergenic 35.0%
AGAAAATGGGGTTGAAGAAA+GGG - chr7_4:55286483-55286502 Msa1163880:three_prime_UTR 35.0%
ACACTTATGGTCATTCCAAT+TGG - chr7_4:55286549-55286568 Msa1163880:CDS 35.0%
! ATCTGAAACCCGATATCAAA+AGG - chr7_4:55286775-55286794 Msa1163880:CDS 35.0%
! TCTGAAACCCGATATCAAAA+GGG - chr7_4:55286776-55286795 Msa1163880:CDS 35.0%
! AAGTTACCCCTTTTGATATC+GGG + chr7_4:55286786-55286805 None:intergenic 35.0%
! GAAGTTACCCCTTTTGATAT+CGG + chr7_4:55286787-55286806 None:intergenic 35.0%
TAACTTCACCAAAGAAGAAG+AGG - chr7_4:55286800-55286819 Msa1163880:CDS 35.0%
TATTGCATCCTCTTCTTCTT+TGG + chr7_4:55286811-55286830 None:intergenic 35.0%
TACAGAGCAGAATATTAGCT+AGG + chr7_4:55286893-55286912 None:intergenic 35.0%
GCTAATATTCTGCTCTGTAT+AGG - chr7_4:55286894-55286913 Msa1163880:CDS 35.0%
CATAACAAGATTGGTACAGA+TGG - chr7_4:55287301-55287320 Msa1163880:intron 35.0%
! GGATTTTCTCTTTTCTCCTT+TGG - chr7_4:55287408-55287427 Msa1163880:intron 35.0%
!!! CTCAGCCTACTTTTGAAATT+TGG + chr7_4:55287612-55287631 None:intergenic 35.0%
! TGGTTTAATGATGATGCAGA+TGG - chr7_4:55287804-55287823 Msa1163880:intron 35.0%
!!! TTGTGTTCATGTTGGTTTTG+TGG + chr7_4:55287911-55287930 None:intergenic 35.0%
TACTGTTGTTGTGTTCATGT+TGG + chr7_4:55287919-55287938 None:intergenic 35.0%
! CATTGAGACAAATGGTGTTA+TGG - chr7_4:55288195-55288214 Msa1163880:intron 35.0%
!! ACAAATGGTGTTATGGACAT+TGG - chr7_4:55288202-55288221 Msa1163880:intron 35.0%
GAACTTGTATGCTCATTCAA+TGG - chr7_4:55288424-55288443 Msa1163880:five_prime_UTR 35.0%
TGCTTAGATGCAGAAAATGT+AGG + chr7_4:55288512-55288531 None:intergenic 35.0%
! GTGTCACCTTTTGATCAAGT+TGG - chr7_4:55286351-55286370 Msa1163880:three_prime_UTR 40.0%
GAGAAAATGGGGTTGAAGAA+AGG - chr7_4:55286482-55286501 Msa1163880:three_prime_UTR 40.0%
AAAGAGTTGCAGATTGCGAT+GGG - chr7_4:55286746-55286765 Msa1163880:CDS 40.0%
CTGAAACCCGATATCAAAAG+GGG - chr7_4:55286777-55286796 Msa1163880:CDS 40.0%
TGCATCAAATGTTGGGAAAC+AGG - chr7_4:55286838-55286857 Msa1163880:CDS 40.0%
!! CTAGGTAGTGGAAATGTAAC+TGG + chr7_4:55286875-55286894 None:intergenic 40.0%
GCAGAATATTAGCTAGGTAG+TGG + chr7_4:55286887-55286906 None:intergenic 40.0%
TCTGTATAGGCTTGAACTGA+TGG - chr7_4:55286907-55286926 Msa1163880:CDS 40.0%
ATTGGTACAGATGGATACGT+CGG - chr7_4:55287310-55287329 Msa1163880:intron 40.0%
GTCTCGAATAATGTTAGCTC+AGG - chr7_4:55287654-55287673 Msa1163880:intron 40.0%
! TGGCAGCCTTTTCTTCAAAT+GGG + chr7_4:55287891-55287910 None:intergenic 40.0%
!! TTTGGTGTCTTGGTCTGAAT+TGG + chr7_4:55287990-55288009 None:intergenic 40.0%
!! TTTGTTCCTGTTTGGTGTCT+TGG + chr7_4:55288000-55288019 None:intergenic 40.0%
ACTCCTTCTTCTGTTCCTAA+TGG + chr7_4:55288253-55288272 None:intergenic 40.0%
TATGCCAAGATATGGACTTC+TGG - chr7_4:55288296-55288315 Msa1163880:CDS 40.0%
GAAAATGTAGGCAAATGTGG+AGG + chr7_4:55288500-55288519 None:intergenic 40.0%
GCAGAAAATGTAGGCAAATG+TGG + chr7_4:55288503-55288522 None:intergenic 40.0%
! GTGTCACCTTTTGATCAAGT+TGG - chr7_4:55286351-55286370 Msa1163880:three_prime_UTR 40.0%
GAGAAAATGGGGTTGAAGAA+AGG - chr7_4:55286482-55286501 Msa1163880:three_prime_UTR 40.0%
AAAGAGTTGCAGATTGCGAT+GGG - chr7_4:55286746-55286765 Msa1163880:CDS 40.0%
CTGAAACCCGATATCAAAAG+GGG - chr7_4:55286777-55286796 Msa1163880:CDS 40.0%
TGCATCAAATGTTGGGAAAC+AGG - chr7_4:55286838-55286857 Msa1163880:CDS 40.0%
!! CTAGGTAGTGGAAATGTAAC+TGG + chr7_4:55286875-55286894 None:intergenic 40.0%
GCAGAATATTAGCTAGGTAG+TGG + chr7_4:55286887-55286906 None:intergenic 40.0%
TCTGTATAGGCTTGAACTGA+TGG - chr7_4:55286907-55286926 Msa1163880:CDS 40.0%
ATTGGTACAGATGGATACGT+CGG - chr7_4:55287310-55287329 Msa1163880:intron 40.0%
GTCTCGAATAATGTTAGCTC+AGG - chr7_4:55287654-55287673 Msa1163880:intron 40.0%
! TGGCAGCCTTTTCTTCAAAT+GGG + chr7_4:55287891-55287910 None:intergenic 40.0%
!! TTTGGTGTCTTGGTCTGAAT+TGG + chr7_4:55287990-55288009 None:intergenic 40.0%
!! TTTGTTCCTGTTTGGTGTCT+TGG + chr7_4:55288000-55288019 None:intergenic 40.0%
ACTCCTTCTTCTGTTCCTAA+TGG + chr7_4:55288253-55288272 None:intergenic 40.0%
TATGCCAAGATATGGACTTC+TGG - chr7_4:55288296-55288315 Msa1163880:CDS 40.0%
GAAAATGTAGGCAAATGTGG+AGG + chr7_4:55288500-55288519 None:intergenic 40.0%
GCAGAAAATGTAGGCAAATG+TGG + chr7_4:55288503-55288522 None:intergenic 40.0%
AGCTCCATGCTGTGAGAAAA+TGG - chr7_4:55286469-55286488 Msa1163880:three_prime_UTR 45.0%
GCTCCATGCTGTGAGAAAAT+GGG - chr7_4:55286470-55286489 Msa1163880:three_prime_UTR 45.0%
CTCCATGCTGTGAGAAAATG+GGG - chr7_4:55286471-55286490 Msa1163880:three_prime_UTR 45.0%
! AACCCCATTTTCTCACAGCA+TGG + chr7_4:55286476-55286495 None:intergenic 45.0%
CGATCTTCTTCTGTAGTCCA+TGG + chr7_4:55286509-55286528 None:intergenic 45.0%
TCAACAGGATTGCTAAGGTG+TGG - chr7_4:55286723-55286742 Msa1163880:CDS 45.0%
GAAAGAGTTGCAGATTGCGA+TGG - chr7_4:55286745-55286764 Msa1163880:CDS 45.0%
GTATAGGCTTGAACTGATGG+AGG - chr7_4:55286910-55286929 Msa1163880:CDS 45.0%
GATGGTCAACTATTGCAGCA+AGG - chr7_4:55287822-55287841 Msa1163880:intron 45.0%
ACTATTGCAGCAAGGTTACC+TGG - chr7_4:55287830-55287849 Msa1163880:intron 45.0%
ATCTCGTTATCTGTTCGTCC+AGG + chr7_4:55287851-55287870 None:intergenic 45.0%
GGCACACCCATTTGAAGAAA+AGG - chr7_4:55287882-55287901 Msa1163880:intron 45.0%
! GTGGCAGCCTTTTCTTCAAA+TGG + chr7_4:55287892-55287911 None:intergenic 45.0%
GTCGACATGAAAGTCCAACT+TGG + chr7_4:55287963-55287982 None:intergenic 45.0%
TTCAGACCAAGACACCAAAC+AGG - chr7_4:55287991-55288010 Msa1163880:intron 45.0%
GCTCCATTAGGAACAGAAGA+AGG - chr7_4:55288247-55288266 Msa1163880:intron 45.0%
AGCTCCATGCTGTGAGAAAA+TGG - chr7_4:55286469-55286488 Msa1163880:three_prime_UTR 45.0%
GCTCCATGCTGTGAGAAAAT+GGG - chr7_4:55286470-55286489 Msa1163880:three_prime_UTR 45.0%
CTCCATGCTGTGAGAAAATG+GGG - chr7_4:55286471-55286490 Msa1163880:three_prime_UTR 45.0%
! AACCCCATTTTCTCACAGCA+TGG + chr7_4:55286476-55286495 None:intergenic 45.0%
CGATCTTCTTCTGTAGTCCA+TGG + chr7_4:55286509-55286528 None:intergenic 45.0%
TCAACAGGATTGCTAAGGTG+TGG - chr7_4:55286723-55286742 Msa1163880:CDS 45.0%
GAAAGAGTTGCAGATTGCGA+TGG - chr7_4:55286745-55286764 Msa1163880:CDS 45.0%
GTATAGGCTTGAACTGATGG+AGG - chr7_4:55286910-55286929 Msa1163880:CDS 45.0%
GATGGTCAACTATTGCAGCA+AGG - chr7_4:55287822-55287841 Msa1163880:intron 45.0%
ACTATTGCAGCAAGGTTACC+TGG - chr7_4:55287830-55287849 Msa1163880:intron 45.0%
ATCTCGTTATCTGTTCGTCC+AGG + chr7_4:55287851-55287870 None:intergenic 45.0%
GGCACACCCATTTGAAGAAA+AGG - chr7_4:55287882-55287901 Msa1163880:intron 45.0%
! GTGGCAGCCTTTTCTTCAAA+TGG + chr7_4:55287892-55287911 None:intergenic 45.0%
GTCGACATGAAAGTCCAACT+TGG + chr7_4:55287963-55287982 None:intergenic 45.0%
TTCAGACCAAGACACCAAAC+AGG - chr7_4:55287991-55288010 Msa1163880:intron 45.0%
GCTCCATTAGGAACAGAAGA+AGG - chr7_4:55288247-55288266 Msa1163880:intron 45.0%
! TTTGGGAAGAGCACGCCAAT+TGG + chr7_4:55286567-55286586 None:intergenic 50.0%
GGTGTCTTGGTCTGAATTGG+AGG + chr7_4:55287987-55288006 None:intergenic 50.0%
CGTGCCAGAAGTCCATATCT+TGG + chr7_4:55288303-55288322 None:intergenic 50.0%
CGATGTTTATGCGAGAGCTG+AGG - chr7_4:55288321-55288340 Msa1163880:CDS 50.0%
! TTTGGGAAGAGCACGCCAAT+TGG + chr7_4:55286567-55286586 None:intergenic 50.0%
GGTGTCTTGGTCTGAATTGG+AGG + chr7_4:55287987-55288006 None:intergenic 50.0%
CGTGCCAGAAGTCCATATCT+TGG + chr7_4:55288303-55288322 None:intergenic 50.0%
CGATGTTTATGCGAGAGCTG+AGG - chr7_4:55288321-55288340 Msa1163880:CDS 50.0%
TGGGGTTGAAGAAAGGGCCA+TGG - chr7_4:55286489-55286508 Msa1163880:exon 55.0%
CGTGCTCTTCCCAAACAAGC+TGG - chr7_4:55286572-55286591 Msa1163880:CDS 55.0%
TGGGGTTGAAGAAAGGGCCA+TGG - chr7_4:55286489-55286508 Msa1163880:exon 55.0%
CGTGCTCTTCCCAAACAAGC+TGG - chr7_4:55286572-55286591 Msa1163880:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55286319 55288557 55286319 ID=Msa1163880;Name=Msa1163880
chr7_4 mRNA 55286319 55288557 55286319 ID=Msa1163880-mRNA-1;Parent=Msa1163880;Name=Msa1163880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=142|1|1|1|1|1|3|188|269
chr7_4 exon 55286319 55287053 55286319 ID=Msa1163880-mRNA-1:exon:16148;Parent=Msa1163880-mRNA-1
chr7_4 exon 55288017 55288146 55288017 ID=Msa1163880-mRNA-1:exon:16147;Parent=Msa1163880-mRNA-1
chr7_4 exon 55288283 55288557 55288283 ID=Msa1163880-mRNA-1:exon:16146;Parent=Msa1163880-mRNA-1
chr7_4 five_prime_UTR 55288416 55288557 55288416 ID=Msa1163880-mRNA-1:five_prime_utr;Parent=Msa1163880-mRNA-1
chr7_4 CDS 55288283 55288415 55288283 ID=Msa1163880-mRNA-1:cds;Parent=Msa1163880-mRNA-1
chr7_4 CDS 55288017 55288146 55288017 ID=Msa1163880-mRNA-1:cds;Parent=Msa1163880-mRNA-1
chr7_4 CDS 55286507 55287053 55286507 ID=Msa1163880-mRNA-1:cds;Parent=Msa1163880-mRNA-1
chr7_4 three_prime_UTR 55286319 55286506 55286319 ID=Msa1163880-mRNA-1:three_prime_utr;Parent=Msa1163880-mRNA-1
Gene Sequence

>Msa1163880

ATGGGAAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAAAGGGCCATGGACTACAGAAGAAGATCGAATCCTCATCAATCACATAAACACTTATGGTCATTCCAATTGGCGTGCTCTTCCCAAACAAGCTGGATTGCTAAGGTGTGGAAAGAGTTGCAGATTGCGATGGGCAAATTATCTGAAACCCGATATCAAAAGGGGTAACTTCACCAAAGAAGAAGAGGATGCAATAATCAATTTGCATCAAATGTTGGGAAACAGATGGTCAACTATTGCAGCAAGGTTACCTGGACGAACAGATAACGAGATAAAAAATGTATGGCACACCCATTTGAAGAAAAGGCTGCCACAAAACCAACATGAACACAACAACAGTACAAAACGAAACAAAAAACAAACCAAGTTGGACTTTCATGTCGACGCCTCCAATTCAGACCAAGACACCAAACAGGAACAAAATCATGAAGATGATAGGCAACAGTGTTCTAGTGACGTGTCATCACATAATAATAGTAGCATTGCTACTTCAAATAATGATATAAGTTACAATAATATCAACAACAACAATAATAATGATGTTGTTGCATTGGATGATGATTTTTGGTGTGAAGTTTTGTCATCTGATAATTCTAGCATTGAGACAAATGGTGTTATGGACATTGGTGTTCATAATTATCAATTTCAAGCTCCATTAGGAACAGAAGAAGGAGTTTTTGATTCTAGTTCATTGAGTTTATGCCAAGATATGGACTTCTGGCACGATGTTTATGCGAGAGCTGAGGAAATAACTGAGTTACTAGAATTATGA
Protein sequence

>Msa1163880

MGRAPCCEKMGLKKGPWTTEEDRILINHINTYGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQNQHEHNNSTKRNKKQTKLDFHVDASNSDQDTKQEQNHEDDRQQCSSDVSSHNNSSIATSNNDISYNNINNNNNNDVVALDDDFWCEVLSSDNSSIETNGVMDIGVHNYQFQAPLGTEEGVFDSSSLSLCQDMDFWHDVYARAEEITELLEL*