AlfalfaGEDB | Msa1163880

M. sativa cultivar zhongmu-4 / Msa1163880

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163880	XP_013449896.1	92.857	280	7	3	1	269	1	278	0.0	526

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163880	sp\|Q9LTC4\|MYB15_ARATH	49.488	293	111	8	1	267	1	282	1.10e-83	255

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163880	A0A072U2K6	92.857	280	7	3	1	269	1	278	0.0	526

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TFs/TRs:

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Gene ID	Type	Classification
Msa1163880	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081940	Msa1163880	0.808211	3.462640e-50	-8.615850e-47
Msa0128430	Msa1163880	0.806633	7.480983e-50	-8.615850e-47
Msa0358110	Msa1163880	0.812437	4.241408e-51	-8.615850e-47
Msa0358120	Msa1163880	0.809700	1.662562e-50	-8.615850e-47
Msa0418400	Msa1163880	0.823265	1.520601e-53	-8.615850e-47
Msa0472710	Msa1163880	0.811559	6.588176e-51	-8.615850e-47
Msa0472720	Msa1163880	0.806404	8.362841e-50	-8.615850e-47
Msa0472770	Msa1163880	0.835572	1.552266e-56	-8.615850e-47
Msa0542470	Msa1163880	0.821373	4.180460e-53	-8.615850e-47
Msa0583670	Msa1163880	0.807600	4.669298e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163880	MtrunA17_Chr7g0261281	92.857	280	7	3	1	269	1	278	0.0	526
Msa1163880	MtrunA17_Chr1g0167661	48.029	279	110	9	1	269	1	254	9.17e-78	236
Msa1163880	MtrunA17_Chr1g0187761	47.778	270	128	5	1	269	1	258	1.02e-76	233
Msa1163880	MtrunA17_Chr1g0167691	48.387	279	110	8	1	269	1	255	8.42e-75	228
Msa1163880	MtrunA17_Chr7g0274581	74.167	120	31	0	1	120	1	120	9.41e-71	216
Msa1163880	MtrunA17_Chr4g0039971	76.271	118	28	0	1	118	2	119	1.34e-64	206
Msa1163880	MtrunA17_Chr2g0323411	75.000	116	29	0	1	116	1	116	1.84e-62	199
Msa1163880	MtrunA17_Chr8g0349261	55.319	188	63	6	1	176	1	179	6.84e-62	197
Msa1163880	MtrunA17_Chr8g0346561	63.158	133	49	0	1	133	1	133	1.05e-61	196
Msa1163880	MtrunA17_Chr1g0203411	45.740	223	94	2	1	196	1	223	1.84e-61	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163880	AT3G23250.1	49.488	293	111	8	1	267	1	282	1.12e-84	255
Msa1163880	AT2G31180.1	48.387	279	104	7	1	269	1	249	3.41e-81	244
Msa1163880	AT1G06180.1	50.973	257	95	7	1	255	1	228	2.58e-77	235
Msa1163880	AT3G02940.2	74.576	118	30	0	1	118	1	118	4.10e-64	203
Msa1163880	AT3G02940.1	74.576	118	30	0	1	118	1	118	7.60e-64	203
Msa1163880	AT3G02940.3	74.576	118	30	0	1	118	1	118	7.60e-64	203
Msa1163880	AT5G16770.4	74.576	118	30	0	1	118	1	118	2.04e-63	202
Msa1163880	AT5G16770.3	74.576	118	30	0	1	118	1	118	2.04e-63	202
Msa1163880	AT3G61250.1	73.276	116	31	0	1	116	1	116	2.95e-63	201
Msa1163880	AT5G16770.1	74.576	118	30	0	1	118	1	118	5.08e-63	201

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Find 57 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTACCAGCTTGTTT+GGG	0.417453	7_4:+55288273	None:intergenic
AAAGAGTTGCAGATTGCGAT+GGG	0.587500	7_4:-55288108	Msa1163880:CDS
AACAAAATCATGAAGATGAT+AGG	0.428670	7_4:-55286840	Msa1163880:CDS
AAGTGTTTATGTGATTGATG+AGG	0.675801	7_4:+55288322	None:intergenic
AATATGCCAACTTGATCAAA+AGG	0.440628	7_4:+55288497	None:intergenic
AATCAATTTGCATCAAATGT+TGG	0.410701	7_4:-55288024	Msa1163880:CDS
AATTCTAGCATTGAGACAAA+TGG	0.516171	7_4:-55286667	Msa1163880:CDS
ACAAATGGTGTTATGGACAT+TGG	0.642021	7_4:-55286652	Msa1163880:CDS
ACACTTATGGTCATTCCAAT+TGG	0.447001	7_4:-55288305	Msa1163880:CDS
ACTATTGCAGCAAGGTTACC+TGG	0.477392	7_4:-55287024	Msa1163880:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATGCCAACTTGATCAAA+AGG	+	chr7_4:55286360-55286379	None:intergenic	30.0%
AAGTGTTTATGTGATTGATG+AGG	+	chr7_4:55286535-55286554	None:intergenic	30.0%
AAGATAAATCAAGAGACACT+GGG	+	chr7_4:55287260-55287279	None:intergenic	30.0%
AAAGATAAATCAAGAGACAC+TGG	+	chr7_4:55287261-55287280	None:intergenic	30.0%
AATACTACTCCAAAAAGCAA+AGG	-	chr7_4:55287387-55287406	Msa1163880:intron	30.0%
CGAATAATATCATACTTTCG+TGG	-	chr7_4:55287582-55287601	Msa1163880:intron	30.0%
TATCAATTTCAAGCTCCATT+AGG	-	chr7_4:55288235-55288254	Msa1163880:intron	30.0%
ATTGAGTTTATGCCAAGATA+TGG	-	chr7_4:55288288-55288307	Msa1163880:CDS	30.0%
ATACAAGTTCCATACAATCT+AGG	+	chr7_4:55288414-55288433	None:intergenic	30.0%
AATATGCCAACTTGATCAAA+AGG	+	chr7_4:55286360-55286379	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	55286319	55288557	55286319	ID=Msa1163880;Name=Msa1163880
chr7_4	mRNA	55286319	55288557	55286319	ID=Msa1163880-mRNA-1;Parent=Msa1163880;Name=Msa1163880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=142\|1\|1\|1\|1\|1\|3\|188\|269
chr7_4	exon	55286319	55287053	55286319	ID=Msa1163880-mRNA-1:exon:16148;Parent=Msa1163880-mRNA-1
chr7_4	exon	55288017	55288146	55288017	ID=Msa1163880-mRNA-1:exon:16147;Parent=Msa1163880-mRNA-1
chr7_4	exon	55288283	55288557	55288283	ID=Msa1163880-mRNA-1:exon:16146;Parent=Msa1163880-mRNA-1
chr7_4	five_prime_UTR	55288416	55288557	55288416	ID=Msa1163880-mRNA-1:five_prime_utr;Parent=Msa1163880-mRNA-1
chr7_4	CDS	55288283	55288415	55288283	ID=Msa1163880-mRNA-1:cds;Parent=Msa1163880-mRNA-1
chr7_4	CDS	55288017	55288146	55288017	ID=Msa1163880-mRNA-1:cds;Parent=Msa1163880-mRNA-1
chr7_4	CDS	55286507	55287053	55286507	ID=Msa1163880-mRNA-1:cds;Parent=Msa1163880-mRNA-1
chr7_4	three_prime_UTR	55286319	55286506	55286319	ID=Msa1163880-mRNA-1:three_prime_utr;Parent=Msa1163880-mRNA-1

Gene Sequence

>Msa1163880

ATGGGAAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAAAGGGCCATGGACTACAGAAGAAGATCGAATCCTCATCAATCACATAAACACTTATGGTCATTCCAATTGGCGTGCTCTTCCCAAACAAGCTGGATTGCTAAGGTGTGGAAAGAGTTGCAGATTGCGATGGGCAAATTATCTGAAACCCGATATCAAAAGGGGTAACTTCACCAAAGAAGAAGAGGATGCAATAATCAATTTGCATCAAATGTTGGGAAACAGATGGTCAACTATTGCAGCAAGGTTACCTGGACGAACAGATAACGAGATAAAAAATGTATGGCACACCCATTTGAAGAAAAGGCTGCCACAAAACCAACATGAACACAACAACAGTACAAAACGAAACAAAAAACAAACCAAGTTGGACTTTCATGTCGACGCCTCCAATTCAGACCAAGACACCAAACAGGAACAAAATCATGAAGATGATAGGCAACAGTGTTCTAGTGACGTGTCATCACATAATAATAGTAGCATTGCTACTTCAAATAATGATATAAGTTACAATAATATCAACAACAACAATAATAATGATGTTGTTGCATTGGATGATGATTTTTGGTGTGAAGTTTTGTCATCTGATAATTCTAGCATTGAGACAAATGGTGTTATGGACATTGGTGTTCATAATTATCAATTTCAAGCTCCATTAGGAACAGAAGAAGGAGTTTTTGATTCTAGTTCATTGAGTTTATGCCAAGATATGGACTTCTGGCACGATGTTTATGCGAGAGCTGAGGAAATAACTGAGTTACTAGAATTATGA

Protein sequence

>Msa1163880

MGRAPCCEKMGLKKGPWTTEEDRILINHINTYGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQNQHEHNNSTKRNKKQTKLDFHVDASNSDQDTKQEQNHEDDRQQCSSDVSSHNNSSIATSNNDISYNNINNNNNNDVVALDDDFWCEVLSSDNSSIETNGVMDIGVHNYQFQAPLGTEEGVFDSSSLSLCQDMDFWHDVYARAEEITELLEL*