AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123570 MtrunA17_Chr2g0279511 99.107 112 1 0 1 112 1 112 2.03e-79 228
Msa1123570 MtrunA17_Chr8g0377771 45.455 110 54 4 2 110 38 142 8.27e-20 83.2
Msa1123570 MtrunA17_Chr8g0377771 36.036 111 65 3 3 110 272 379 5.21e-14 66.6
Msa1123570 MtrunA17_Chr5g0435521 40.000 110 63 3 2 110 12 119 9.80e-20 79.7
Msa1123570 MtrunA17_Chr8g0352971 41.905 105 50 3 11 111 9 106 1.03e-17 77.0
Msa1123570 MtrunA17_Chr7g0234801 45.263 95 47 3 16 110 49 138 2.67e-17 75.9
Msa1123570 MtrunA17_Chr8g0339141 46.316 95 46 3 16 110 55 144 5.69e-17 75.1
Msa1123570 MtrunA17_Chr7g0255551 44.037 109 55 4 2 109 21 124 2.25e-16 73.2
Msa1123570 MtrunA17_Chr4g0052911 36.364 110 56 4 11 110 133 238 2.71e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123570 AT5G64350.1 85.714 112 16 0 1 112 1 112 1.38e-70 206
Msa1123570 AT3G55520.2 35.780 109 69 1 2 110 12 119 1.51e-17 74.3
Msa1123570 AT3G55520.3 35.780 109 69 1 2 110 12 119 1.51e-17 74.3
Msa1123570 AT3G55520.1 35.780 109 69 1 2 110 12 119 1.51e-17 74.3
Msa1123570 AT5G48570.1 40.000 110 60 4 2 110 47 151 1.00e-15 72.0
Msa1123570 AT3G25230.2 40.367 109 59 4 2 109 39 142 4.87e-15 70.1
Msa1123570 AT3G25230.1 40.367 109 59 4 2 109 39 142 6.25e-15 69.7
Msa1123570 AT4G25340.1 41.176 102 53 4 12 112 382 477 5.61e-14 67.0
Msa1123570 AT5G45680.1 40.367 109 51 4 11 109 101 205 4.20e-13 63.2
Msa1123570 AT5G05420.1 40.196 102 53 4 12 112 49 143 9.33e-13 60.8

Find 50 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCTCCAATATTAATATT+TGG 0.175040 7_3:-74482109 Msa1123570:three_prime_UTR
ATTTGTTGATCAATATTATT+TGG 0.184739 7_3:-74482041 Msa1123570:three_prime_UTR
CGCTAGTGGCTTTCCTGCTT+GGG 0.208113 7_3:-74482342 Msa1123570:CDS
ACACTACCAAATATTAATAT+TGG 0.265284 7_3:+74482103 None:intergenic
GATAAAGAAAATAAAGAAAC+AGG 0.282556 7_3:+74482065 None:intergenic
TACTGAAGGACAAACTAAAA+AGG 0.293548 7_3:+74482260 None:intergenic
TGCTCTCCTGATTATGCTTA+TGG 0.301017 7_3:-74482365 Msa1123570:CDS
GTGACCTTTCTCAGAAGTTC+TGG 0.322760 7_3:-74483472 Msa1123570:CDS
TCGGAGAAGTTGCTCGTCTT+CGG 0.329775 7_3:-74482945 Msa1123570:CDS
AATACAACCCAACTCTGTTT+TGG 0.332199 7_3:-74482318 Msa1123570:CDS
GCGCTAGTGGCTTTCCTGCT+TGG 0.337892 7_3:-74482343 Msa1123570:CDS
CGGAGAAGTTGCTCGTCTTC+GGG 0.345948 7_3:-74482944 Msa1123570:intron
AATCCATTCACTTTCAAAAT+CGG 0.376739 7_3:-74483342 Msa1123570:CDS
GAAAGAAGGAAGAAGAAAGA+TGG 0.415250 7_3:-74483759 Msa1123570:exon
AAAGAAGGAAGAAGAAAGAT+GGG 0.430314 7_3:-74483758 Msa1123570:exon
GTTGGCTTAGGACCGTTTCC+AGG 0.437240 7_3:+74483713 None:intergenic
TATTTGGCAATGCATGGTCT+TGG 0.437640 7_3:-74482025 Msa1123570:three_prime_UTR
GAGAGTGTGCTCACCGTATC+CGG 0.439075 7_3:+74483661 None:intergenic
CTAGCGCCATAAGCATAATC+AGG 0.449393 7_3:+74482359 None:intergenic
TCAAACTCCAAAACAGAGTT+GGG 0.461799 7_3:+74482311 None:intergenic
CTCAAACTCCAAAACAGAGT+TGG 0.473985 7_3:+74482310 None:intergenic
GGTGTCATTGGCATGCAAAT+CGG 0.478078 7_3:-74482964 Msa1123570:CDS
AAAGTGAATGGATTCTGGCC+AGG 0.495829 7_3:+74483351 None:intergenic
GCAGATATCACTCAAAGTGC+AGG 0.504337 7_3:+74482182 None:intergenic
ACCTTTCTCAGAAGTTCTGG+AGG 0.508162 7_3:-74483469 Msa1123570:intron
CAAATCGTTCGACCTGGAAA+CGG 0.515678 7_3:-74483725 Msa1123570:CDS
ACTGTCCACTGCACCGGATA+CGG 0.518197 7_3:-74483674 Msa1123570:intron
ACCTCCAGAACTTCTGAGAA+AGG 0.525297 7_3:+74483468 None:intergenic
GCATAAGATCGAGTGAAAGA+AGG 0.527705 7_3:-74483773 Msa1123570:five_prime_UTR
TTCACTTTCAAAATCGGCAA+AGG 0.528436 7_3:-74483336 Msa1123570:CDS
GGATGGGATGAAGGTGTCAT+TGG 0.529844 7_3:-74482976 Msa1123570:CDS
CAATATTATTTGGCAATGCA+TGG 0.531070 7_3:-74482031 Msa1123570:three_prime_UTR
ATACATGTCCACAGAAATGT+AGG 0.543594 7_3:+74482214 None:intergenic
TATTACAGTACAAAAGATCC+TGG 0.543772 7_3:-74483369 Msa1123570:intron
ATTGGAGAGTTTGAGATCAG+TGG 0.545467 7_3:+74482121 None:intergenic
GATTATGCTTATGGCGCTAG+TGG 0.545830 7_3:-74482356 Msa1123570:CDS
AACGGTCCTAAGCCAACTCC+TGG 0.550713 7_3:-74483707 Msa1123570:CDS
AACGTCACTGTCCACTGCAC+CGG 0.551030 7_3:-74483680 Msa1123570:CDS
TTGTGTGTAGGATGGGATGA+AGG 0.556041 7_3:-74482985 Msa1123570:intron
TTGGGTTGTATTCCCCAAGC+AGG 0.558631 7_3:+74482329 None:intergenic
CAGATATCACTCAAAGTGCA+GGG 0.569024 7_3:+74482183 None:intergenic
GCTAGTGGCTTTCCTGCTTG+GGG 0.575669 7_3:-74482341 Msa1123570:CDS
GGCAAAGGTTCTGTCATCAA+AGG 0.586910 7_3:-74483321 Msa1123570:intron
TCATAATAATAATTTACTGA+AGG 0.596163 7_3:+74482246 None:intergenic
TTGAGTATCCTACATTTCTG+TGG 0.596981 7_3:-74482222 Msa1123570:three_prime_UTR
GCTCACCGTATCCGGTGCAG+TGG 0.598896 7_3:+74483669 None:intergenic
GAGAAGCAAATCGTTCGACC+TGG 0.621651 7_3:-74483731 Msa1123570:CDS
ACTTTGAGTGATATCTGCAG+TGG 0.642089 7_3:-74482177 Msa1123570:three_prime_UTR
ATAAAGAAAATAAAGAAACA+GGG 0.660507 7_3:+74482066 None:intergenic
AGATATCACTCAAAGTGCAG+GGG 0.704961 7_3:+74482184 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATTCAAATTATAAG+GGG + chr7_3:74482201-74482220 None:intergenic 10.0%
!! CTAATTTAATTCAAATTATA+AGG + chr7_3:74482203-74482222 None:intergenic 10.0%
!! ACAATATTAAAAACAAAAAA+TGG + chr7_3:74482376-74482395 None:intergenic 10.0%
!! AATTTAATTCAAATTATAAG+GGG + chr7_3:74482201-74482220 None:intergenic 10.0%
!! CTAATTTAATTCAAATTATA+AGG + chr7_3:74482203-74482222 None:intergenic 10.0%
!! ACAATATTAAAAACAAAAAA+TGG + chr7_3:74482376-74482395 None:intergenic 10.0%
!! TAAAATGAAAGATAAGAAAT+GGG + chr7_3:74482174-74482193 None:intergenic 15.0%
!! TTAAAATGAAAGATAAGAAA+TGG + chr7_3:74482175-74482194 None:intergenic 15.0%
!! TCATAATAATAATTTACTGA+AGG + chr7_3:74483544-74483563 None:intergenic 15.0%
!! ATAAAGAAAATAAAGAAACA+GGG + chr7_3:74483724-74483743 None:intergenic 15.0%
!!! ATTTGTTGATCAATATTATT+TGG - chr7_3:74483746-74483765 Msa1123570:exon 15.0%
!! GAAATAAAAGAAAAATCTTT+AGG + chr7_3:74483835-74483854 None:intergenic 15.0%
!! TAAAATGAAAGATAAGAAAT+GGG + chr7_3:74482174-74482193 None:intergenic 15.0%
!! TTAAAATGAAAGATAAGAAA+TGG + chr7_3:74482175-74482194 None:intergenic 15.0%
!! TCATAATAATAATTTACTGA+AGG + chr7_3:74483544-74483563 None:intergenic 15.0%
!! ATAAAGAAAATAAAGAAACA+GGG + chr7_3:74483724-74483743 None:intergenic 15.0%
!!! ATTTGTTGATCAATATTATT+TGG - chr7_3:74483746-74483765 Msa1123570:exon 15.0%
!! GAAATAAAAGAAAAATCTTT+AGG + chr7_3:74483835-74483854 None:intergenic 15.0%
!! AAAATGAAAGATAAGAAATG+GGG + chr7_3:74482173-74482192 None:intergenic 20.0%
!!! AGAGTTTTTTTTTACACTAT+CGG - chr7_3:74482515-74482534 Msa1123570:intron 20.0%
!!! TACTACTTTTACTTTATTTC+TGG - chr7_3:74482697-74482716 Msa1123570:intron 20.0%
!! AATGGAAATTCAACATATTA+AGG + chr7_3:74483188-74483207 None:intergenic 20.0%
!! GTTGATACTTTGTTAAATAA+TGG - chr7_3:74483353-74483372 Msa1123570:CDS 20.0%
!! AACTCTCCAATATTAATATT+TGG - chr7_3:74483678-74483697 Msa1123570:CDS 20.0%
!! ACACTACCAAATATTAATAT+TGG + chr7_3:74483687-74483706 None:intergenic 20.0%
!! GATAAAGAAAATAAAGAAAC+AGG + chr7_3:74483725-74483744 None:intergenic 20.0%
!! AAAATGAAAGATAAGAAATG+GGG + chr7_3:74482173-74482192 None:intergenic 20.0%
!!! AGAGTTTTTTTTTACACTAT+CGG - chr7_3:74482515-74482534 Msa1123570:intron 20.0%
!!! TACTACTTTTACTTTATTTC+TGG - chr7_3:74482697-74482716 Msa1123570:intron 20.0%
!! AATGGAAATTCAACATATTA+AGG + chr7_3:74483188-74483207 None:intergenic 20.0%
!! GTTGATACTTTGTTAAATAA+TGG - chr7_3:74483353-74483372 Msa1123570:CDS 20.0%
!! AACTCTCCAATATTAATATT+TGG - chr7_3:74483678-74483697 Msa1123570:CDS 20.0%
!! ACACTACCAAATATTAATAT+TGG + chr7_3:74483687-74483706 None:intergenic 20.0%
!! GATAAAGAAAATAAAGAAAC+AGG + chr7_3:74483725-74483744 None:intergenic 20.0%
!!! AAATGGGGTTTTTAGTTTTA+GGG + chr7_3:74482158-74482177 None:intergenic 25.0%
! AACAAAAAATGGAATGACAA+GGG + chr7_3:74482365-74482384 None:intergenic 25.0%
! AAACAAAAAATGGAATGACA+AGG + chr7_3:74482366-74482385 None:intergenic 25.0%
! AATCCATTCACTTTCAAAAT+CGG - chr7_3:74482445-74482464 Msa1123570:intron 25.0%
!!! TTTATAACTTGTTACCACTT+TGG - chr7_3:74482893-74482912 Msa1123570:intron 25.0%
!!! TTATAACTTGTTACCACTTT+GGG - chr7_3:74482894-74482913 Msa1123570:intron 25.0%
! ATTTCTATGGTAAGTGTTTA+TGG - chr7_3:74483126-74483145 Msa1123570:intron 25.0%
!!! TTCAGTTTATATCGTTTTTG+TGG - chr7_3:74483807-74483826 Msa1123570:five_prime_UTR 25.0%
!!! TCAGTTTATATCGTTTTTGT+GGG - chr7_3:74483808-74483827 Msa1123570:five_prime_UTR 25.0%
!!! AAATGGGGTTTTTAGTTTTA+GGG + chr7_3:74482158-74482177 None:intergenic 25.0%
! AACAAAAAATGGAATGACAA+GGG + chr7_3:74482365-74482384 None:intergenic 25.0%
! AAACAAAAAATGGAATGACA+AGG + chr7_3:74482366-74482385 None:intergenic 25.0%
! AATCCATTCACTTTCAAAAT+CGG - chr7_3:74482445-74482464 Msa1123570:intron 25.0%
!!! TTTATAACTTGTTACCACTT+TGG - chr7_3:74482893-74482912 Msa1123570:intron 25.0%
!!! TTATAACTTGTTACCACTTT+GGG - chr7_3:74482894-74482913 Msa1123570:intron 25.0%
! ATTTCTATGGTAAGTGTTTA+TGG - chr7_3:74483126-74483145 Msa1123570:intron 25.0%
!!! TTCAGTTTATATCGTTTTTG+TGG - chr7_3:74483807-74483826 Msa1123570:five_prime_UTR 25.0%
!!! TCAGTTTATATCGTTTTTGT+GGG - chr7_3:74483808-74483827 Msa1123570:five_prime_UTR 25.0%
AAAGAAGGAAGAAGAAAGAT+GGG - chr7_3:74482029-74482048 Msa1123570:three_prime_UTR 30.0%
!!! GAAATGGGGTTTTTAGTTTT+AGG + chr7_3:74482159-74482178 None:intergenic 30.0%
TATTACAGTACAAAAGATCC+TGG - chr7_3:74482418-74482437 Msa1123570:intron 30.0%
!! TTTTGAAAGTGAATGGATTC+TGG + chr7_3:74482444-74482463 None:intergenic 30.0%
CTTATACGTAAGCATTTCTA+TGG - chr7_3:74483113-74483132 Msa1123570:intron 30.0%
CAACATATTAAGGTCATGTT+TGG + chr7_3:74483178-74483197 None:intergenic 30.0%
TACTGAAGGACAAACTAAAA+AGG + chr7_3:74483530-74483549 None:intergenic 30.0%
CAATATTATTTGGCAATGCA+TGG - chr7_3:74483756-74483775 Msa1123570:exon 30.0%
AAAGAAGGAAGAAGAAAGAT+GGG - chr7_3:74482029-74482048 Msa1123570:three_prime_UTR 30.0%
!!! GAAATGGGGTTTTTAGTTTT+AGG + chr7_3:74482159-74482178 None:intergenic 30.0%
TATTACAGTACAAAAGATCC+TGG - chr7_3:74482418-74482437 Msa1123570:intron 30.0%
!! TTTTGAAAGTGAATGGATTC+TGG + chr7_3:74482444-74482463 None:intergenic 30.0%
CTTATACGTAAGCATTTCTA+TGG - chr7_3:74483113-74483132 Msa1123570:intron 30.0%
CAACATATTAAGGTCATGTT+TGG + chr7_3:74483178-74483197 None:intergenic 30.0%
TACTGAAGGACAAACTAAAA+AGG + chr7_3:74483530-74483549 None:intergenic 30.0%
CAATATTATTTGGCAATGCA+TGG - chr7_3:74483756-74483775 Msa1123570:exon 30.0%
GAAAGAAGGAAGAAGAAAGA+TGG - chr7_3:74482028-74482047 Msa1123570:three_prime_UTR 35.0%
AGATCTACTCGTTCTTTGTT+TGG - chr7_3:74482221-74482240 Msa1123570:three_prime_UTR 35.0%
! TTATTGCGATGATGATGAAC+AGG - chr7_3:74482284-74482303 Msa1123570:exon 35.0%
! TATTGCGATGATGATGAACA+GGG - chr7_3:74482285-74482304 Msa1123570:exon 35.0%
! TGATGATGAACAGGGAAAAA+CGG - chr7_3:74482293-74482312 Msa1123570:CDS 35.0%
!!! TTGCCGATTTTGAAAGTGAA+TGG + chr7_3:74482451-74482470 None:intergenic 35.0%
TTCACTTTCAAAATCGGCAA+AGG - chr7_3:74482451-74482470 Msa1123570:intron 35.0%
TTACACACTTGTGAGACTTT+AGG + chr7_3:74482607-74482626 None:intergenic 35.0%
CAATGTACATTCAGATGTGT+TGG - chr7_3:74482743-74482762 Msa1123570:intron 35.0%
GTGAGTAAAACAAACAGCAA+TGG + chr7_3:74483206-74483225 None:intergenic 35.0%
! GTTTTACTCACACACATACA+AGG - chr7_3:74483215-74483234 Msa1123570:intron 35.0%
TATCAACAAGGTCAATGACA+GGG + chr7_3:74483393-74483412 None:intergenic 35.0%
TTATCAACAAGGTCAATGAC+AGG + chr7_3:74483394-74483413 None:intergenic 35.0%
! AATACAACCCAACTCTGTTT+TGG - chr7_3:74483469-74483488 Msa1123570:intron 35.0%
TCAAACTCCAAAACAGAGTT+GGG + chr7_3:74483479-74483498 None:intergenic 35.0%
!!! TGTTTTGGAGTTTGAGATTG+AGG - chr7_3:74483484-74483503 Msa1123570:CDS 35.0%
TTGAGTATCCTACATTTCTG+TGG - chr7_3:74483565-74483584 Msa1123570:intron 35.0%
ATACATGTCCACAGAAATGT+AGG + chr7_3:74483576-74483595 None:intergenic 35.0%
GAAAGAAGGAAGAAGAAAGA+TGG - chr7_3:74482028-74482047 Msa1123570:three_prime_UTR 35.0%
AGATCTACTCGTTCTTTGTT+TGG - chr7_3:74482221-74482240 Msa1123570:three_prime_UTR 35.0%
! TTATTGCGATGATGATGAAC+AGG - chr7_3:74482284-74482303 Msa1123570:exon 35.0%
! TATTGCGATGATGATGAACA+GGG - chr7_3:74482285-74482304 Msa1123570:exon 35.0%
! TGATGATGAACAGGGAAAAA+CGG - chr7_3:74482293-74482312 Msa1123570:CDS 35.0%
!!! TTGCCGATTTTGAAAGTGAA+TGG + chr7_3:74482451-74482470 None:intergenic 35.0%
TTCACTTTCAAAATCGGCAA+AGG - chr7_3:74482451-74482470 Msa1123570:intron 35.0%
TTACACACTTGTGAGACTTT+AGG + chr7_3:74482607-74482626 None:intergenic 35.0%
CAATGTACATTCAGATGTGT+TGG - chr7_3:74482743-74482762 Msa1123570:intron 35.0%
GTGAGTAAAACAAACAGCAA+TGG + chr7_3:74483206-74483225 None:intergenic 35.0%
! GTTTTACTCACACACATACA+AGG - chr7_3:74483215-74483234 Msa1123570:intron 35.0%
TATCAACAAGGTCAATGACA+GGG + chr7_3:74483393-74483412 None:intergenic 35.0%
TTATCAACAAGGTCAATGAC+AGG + chr7_3:74483394-74483413 None:intergenic 35.0%
! AATACAACCCAACTCTGTTT+TGG - chr7_3:74483469-74483488 Msa1123570:intron 35.0%
TCAAACTCCAAAACAGAGTT+GGG + chr7_3:74483479-74483498 None:intergenic 35.0%
!!! TGTTTTGGAGTTTGAGATTG+AGG - chr7_3:74483484-74483503 Msa1123570:CDS 35.0%
TTGAGTATCCTACATTTCTG+TGG - chr7_3:74483565-74483584 Msa1123570:intron 35.0%
ATACATGTCCACAGAAATGT+AGG + chr7_3:74483576-74483595 None:intergenic 35.0%
GCATAAGATCGAGTGAAAGA+AGG - chr7_3:74482014-74482033 Msa1123570:three_prime_UTR 40.0%
!! CTTGTGAGACTTTAGGACTT+AGG + chr7_3:74482600-74482619 None:intergenic 40.0%
TCCAACTATCTGTTGTGTGT+AGG - chr7_3:74482790-74482809 Msa1123570:intron 40.0%
TCCTACACACAACAGATAGT+TGG + chr7_3:74482794-74482813 None:intergenic 40.0%
ACTATCTGTTGTGTGTAGGA+TGG - chr7_3:74482794-74482813 Msa1123570:intron 40.0%
CTATCTGTTGTGTGTAGGAT+GGG - chr7_3:74482795-74482814 Msa1123570:intron 40.0%
CAATTCAATCAAGCCCAAAG+TGG + chr7_3:74482910-74482929 None:intergenic 40.0%
CACTTTGGGCTTGATTGAAT+TGG - chr7_3:74482908-74482927 Msa1123570:intron 40.0%
GCACTGCAAGATTATCAACA+AGG + chr7_3:74483405-74483424 None:intergenic 40.0%
TGCTCTCCTGATTATGCTTA+TGG - chr7_3:74483422-74483441 Msa1123570:intron 40.0%
CTCAAACTCCAAAACAGAGT+TGG + chr7_3:74483480-74483499 None:intergenic 40.0%
AGATATCACTCAAAGTGCAG+GGG + chr7_3:74483606-74483625 None:intergenic 40.0%
CAGATATCACTCAAAGTGCA+GGG + chr7_3:74483607-74483626 None:intergenic 40.0%
ACTTTGAGTGATATCTGCAG+TGG - chr7_3:74483610-74483629 Msa1123570:intron 40.0%
! ATTGGAGAGTTTGAGATCAG+TGG + chr7_3:74483669-74483688 None:intergenic 40.0%
TATTTGGCAATGCATGGTCT+TGG - chr7_3:74483762-74483781 Msa1123570:exon 40.0%
GCATAAGATCGAGTGAAAGA+AGG - chr7_3:74482014-74482033 Msa1123570:three_prime_UTR 40.0%
!! CTTGTGAGACTTTAGGACTT+AGG + chr7_3:74482600-74482619 None:intergenic 40.0%
TCCAACTATCTGTTGTGTGT+AGG - chr7_3:74482790-74482809 Msa1123570:intron 40.0%
TCCTACACACAACAGATAGT+TGG + chr7_3:74482794-74482813 None:intergenic 40.0%
ACTATCTGTTGTGTGTAGGA+TGG - chr7_3:74482794-74482813 Msa1123570:intron 40.0%
CTATCTGTTGTGTGTAGGAT+GGG - chr7_3:74482795-74482814 Msa1123570:intron 40.0%
CAATTCAATCAAGCCCAAAG+TGG + chr7_3:74482910-74482929 None:intergenic 40.0%
CACTTTGGGCTTGATTGAAT+TGG - chr7_3:74482908-74482927 Msa1123570:intron 40.0%
GCACTGCAAGATTATCAACA+AGG + chr7_3:74483405-74483424 None:intergenic 40.0%
TGCTCTCCTGATTATGCTTA+TGG - chr7_3:74483422-74483441 Msa1123570:intron 40.0%
CTCAAACTCCAAAACAGAGT+TGG + chr7_3:74483480-74483499 None:intergenic 40.0%
AGATATCACTCAAAGTGCAG+GGG + chr7_3:74483606-74483625 None:intergenic 40.0%
CAGATATCACTCAAAGTGCA+GGG + chr7_3:74483607-74483626 None:intergenic 40.0%
ACTTTGAGTGATATCTGCAG+TGG - chr7_3:74483610-74483629 Msa1123570:intron 40.0%
! ATTGGAGAGTTTGAGATCAG+TGG + chr7_3:74483669-74483688 None:intergenic 40.0%
TATTTGGCAATGCATGGTCT+TGG - chr7_3:74483762-74483781 Msa1123570:exon 40.0%
CAAATCGTTCGACCTGGAAA+CGG - chr7_3:74482062-74482081 Msa1123570:three_prime_UTR 45.0%
!! TTTTGACCAGGAGTTGGCTT+AGG + chr7_3:74482089-74482108 None:intergenic 45.0%
GTGACCTTTCTCAGAAGTTC+TGG - chr7_3:74482315-74482334 Msa1123570:CDS 45.0%
! ACCTTTCTCAGAAGTTCTGG+AGG - chr7_3:74482318-74482337 Msa1123570:CDS 45.0%
! ACCTCCAGAACTTCTGAGAA+AGG + chr7_3:74482322-74482341 None:intergenic 45.0%
!! TTCTCAGAAGTTCTGGAGGT+TGG - chr7_3:74482322-74482341 Msa1123570:CDS 45.0%
! AAAGTGAATGGATTCTGGCC+AGG + chr7_3:74482439-74482458 None:intergenic 45.0%
GGCAAAGGTTCTGTCATCAA+AGG - chr7_3:74482466-74482485 Msa1123570:intron 45.0%
!! GAGACTTTAGGACTTAGGAG+TGG + chr7_3:74482595-74482614 None:intergenic 45.0%
TTGTGTGTAGGATGGGATGA+AGG - chr7_3:74482802-74482821 Msa1123570:intron 45.0%
!! GGTGTCATTGGCATGCAAAT+CGG - chr7_3:74482823-74482842 Msa1123570:intron 45.0%
ATACACGCGACTCGATTAAG+TGG + chr7_3:74483248-74483267 None:intergenic 45.0%
CTAGCGCCATAAGCATAATC+AGG + chr7_3:74483431-74483450 None:intergenic 45.0%
GATTATGCTTATGGCGCTAG+TGG - chr7_3:74483431-74483450 Msa1123570:intron 45.0%
GCAGATATCACTCAAAGTGC+AGG + chr7_3:74483608-74483627 None:intergenic 45.0%
CAAATCGTTCGACCTGGAAA+CGG - chr7_3:74482062-74482081 Msa1123570:three_prime_UTR 45.0%
!! TTTTGACCAGGAGTTGGCTT+AGG + chr7_3:74482089-74482108 None:intergenic 45.0%
GTGACCTTTCTCAGAAGTTC+TGG - chr7_3:74482315-74482334 Msa1123570:CDS 45.0%
! ACCTTTCTCAGAAGTTCTGG+AGG - chr7_3:74482318-74482337 Msa1123570:CDS 45.0%
! ACCTCCAGAACTTCTGAGAA+AGG + chr7_3:74482322-74482341 None:intergenic 45.0%
!! TTCTCAGAAGTTCTGGAGGT+TGG - chr7_3:74482322-74482341 Msa1123570:CDS 45.0%
! AAAGTGAATGGATTCTGGCC+AGG + chr7_3:74482439-74482458 None:intergenic 45.0%
GGCAAAGGTTCTGTCATCAA+AGG - chr7_3:74482466-74482485 Msa1123570:intron 45.0%
!! GAGACTTTAGGACTTAGGAG+TGG + chr7_3:74482595-74482614 None:intergenic 45.0%
TTGTGTGTAGGATGGGATGA+AGG - chr7_3:74482802-74482821 Msa1123570:intron 45.0%
!! GGTGTCATTGGCATGCAAAT+CGG - chr7_3:74482823-74482842 Msa1123570:intron 45.0%
ATACACGCGACTCGATTAAG+TGG + chr7_3:74483248-74483267 None:intergenic 45.0%
CTAGCGCCATAAGCATAATC+AGG + chr7_3:74483431-74483450 None:intergenic 45.0%
GATTATGCTTATGGCGCTAG+TGG - chr7_3:74483431-74483450 Msa1123570:intron 45.0%
GCAGATATCACTCAAAGTGC+AGG + chr7_3:74483608-74483627 None:intergenic 45.0%
!! TAATTTAATTCAAATTATAA+GGG + chr7_3:74482202-74482221 None:intergenic 5.0%
!! TAATTTAATTCAAATTATAA+GGG + chr7_3:74482202-74482221 None:intergenic 5.0%
GAGAAGCAAATCGTTCGACC+TGG - chr7_3:74482056-74482075 Msa1123570:three_prime_UTR 50.0%
!! GTGACGTTTTGACCAGGAGT+TGG + chr7_3:74482095-74482114 None:intergenic 50.0%
!! TGGACAGTGACGTTTTGACC+AGG + chr7_3:74482101-74482120 None:intergenic 50.0%
!! GGATGGGATGAAGGTGTCAT+TGG - chr7_3:74482811-74482830 Msa1123570:intron 50.0%
TCGGAGAAGTTGCTCGTCTT+CGG - chr7_3:74482842-74482861 Msa1123570:intron 50.0%
TGGATGCGCAGGTCAACTAA+GGG + chr7_3:74483158-74483177 None:intergenic 50.0%
TTGGATGCGCAGGTCAACTA+AGG + chr7_3:74483159-74483178 None:intergenic 50.0%
AAGGTCATGTTTGGATGCGC+AGG + chr7_3:74483169-74483188 None:intergenic 50.0%
! TTGGGTTGTATTCCCCAAGC+AGG + chr7_3:74483461-74483480 None:intergenic 50.0%
GAGAAGCAAATCGTTCGACC+TGG - chr7_3:74482056-74482075 Msa1123570:three_prime_UTR 50.0%
!! GTGACGTTTTGACCAGGAGT+TGG + chr7_3:74482095-74482114 None:intergenic 50.0%
!! TGGACAGTGACGTTTTGACC+AGG + chr7_3:74482101-74482120 None:intergenic 50.0%
!! GGATGGGATGAAGGTGTCAT+TGG - chr7_3:74482811-74482830 Msa1123570:intron 50.0%
TCGGAGAAGTTGCTCGTCTT+CGG - chr7_3:74482842-74482861 Msa1123570:intron 50.0%
TGGATGCGCAGGTCAACTAA+GGG + chr7_3:74483158-74483177 None:intergenic 50.0%
TTGGATGCGCAGGTCAACTA+AGG + chr7_3:74483159-74483178 None:intergenic 50.0%
AAGGTCATGTTTGGATGCGC+AGG + chr7_3:74483169-74483188 None:intergenic 50.0%
! TTGGGTTGTATTCCCCAAGC+AGG + chr7_3:74483461-74483480 None:intergenic 50.0%
! GTTGGCTTAGGACCGTTTCC+AGG + chr7_3:74482077-74482096 None:intergenic 55.0%
AACGGTCCTAAGCCAACTCC+TGG - chr7_3:74482080-74482099 Msa1123570:three_prime_UTR 55.0%
AACGTCACTGTCCACTGCAC+CGG - chr7_3:74482107-74482126 Msa1123570:three_prime_UTR 55.0%
ACTGTCCACTGCACCGGATA+CGG - chr7_3:74482113-74482132 Msa1123570:three_prime_UTR 55.0%
! GAGAGTGTGCTCACCGTATC+CGG + chr7_3:74482129-74482148 None:intergenic 55.0%
CGGAGAAGTTGCTCGTCTTC+GGG - chr7_3:74482843-74482862 Msa1123570:intron 55.0%
CGCTAGTGGCTTTCCTGCTT+GGG - chr7_3:74483445-74483464 Msa1123570:intron 55.0%
GCTAGTGGCTTTCCTGCTTG+GGG - chr7_3:74483446-74483465 Msa1123570:intron 55.0%
! GTTGGCTTAGGACCGTTTCC+AGG + chr7_3:74482077-74482096 None:intergenic 55.0%
AACGGTCCTAAGCCAACTCC+TGG - chr7_3:74482080-74482099 Msa1123570:three_prime_UTR 55.0%
AACGTCACTGTCCACTGCAC+CGG - chr7_3:74482107-74482126 Msa1123570:three_prime_UTR 55.0%
ACTGTCCACTGCACCGGATA+CGG - chr7_3:74482113-74482132 Msa1123570:three_prime_UTR 55.0%
! GAGAGTGTGCTCACCGTATC+CGG + chr7_3:74482129-74482148 None:intergenic 55.0%
CGGAGAAGTTGCTCGTCTTC+GGG - chr7_3:74482843-74482862 Msa1123570:intron 55.0%
CGCTAGTGGCTTTCCTGCTT+GGG - chr7_3:74483445-74483464 Msa1123570:intron 55.0%
GCTAGTGGCTTTCCTGCTTG+GGG - chr7_3:74483446-74483465 Msa1123570:intron 55.0%
GCGCTAGTGGCTTTCCTGCT+TGG - chr7_3:74483444-74483463 Msa1123570:intron 60.0%
GCGCTAGTGGCTTTCCTGCT+TGG - chr7_3:74483444-74483463 Msa1123570:intron 60.0%
GCTCACCGTATCCGGTGCAG+TGG + chr7_3:74482121-74482140 None:intergenic 65.0%
GCTCACCGTATCCGGTGCAG+TGG + chr7_3:74482121-74482140 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74481952 74483857 74481952 ID=Msa1123570;Name=Msa1123570
chr7_3 mRNA 74481952 74483857 74481952 ID=Msa1123570-mRNA-1;Parent=Msa1123570;Name=Msa1123570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=95|1|1|1|1|1|5|334|112
chr7_3 exon 74481952 74482387 74481952 ID=Msa1123570-mRNA-1:exon:19807;Parent=Msa1123570-mRNA-1
chr7_3 exon 74482945 74482997 74482945 ID=Msa1123570-mRNA-1:exon:19806;Parent=Msa1123570-mRNA-1
chr7_3 exon 74483322 74483383 74483322 ID=Msa1123570-mRNA-1:exon:19805;Parent=Msa1123570-mRNA-1
chr7_3 exon 74483470 74483503 74483470 ID=Msa1123570-mRNA-1:exon:19804;Parent=Msa1123570-mRNA-1
chr7_3 exon 74483675 74483857 74483675 ID=Msa1123570-mRNA-1:exon:19803;Parent=Msa1123570-mRNA-1
chr7_3 five_prime_UTR 74483763 74483857 74483763 ID=Msa1123570-mRNA-1:five_prime_utr;Parent=Msa1123570-mRNA-1
chr7_3 CDS 74483675 74483762 74483675 ID=Msa1123570-mRNA-1:cds;Parent=Msa1123570-mRNA-1
chr7_3 CDS 74483470 74483503 74483470 ID=Msa1123570-mRNA-1:cds;Parent=Msa1123570-mRNA-1
chr7_3 CDS 74483322 74483383 74483322 ID=Msa1123570-mRNA-1:cds;Parent=Msa1123570-mRNA-1
chr7_3 CDS 74482945 74482997 74482945 ID=Msa1123570-mRNA-1:cds;Parent=Msa1123570-mRNA-1
chr7_3 CDS 74482286 74482387 74482286 ID=Msa1123570-mRNA-1:cds;Parent=Msa1123570-mRNA-1
chr7_3 three_prime_UTR 74481952 74482285 74481952 ID=Msa1123570-mRNA-1:three_prime_utr;Parent=Msa1123570-mRNA-1
Gene Sequence

>Msa1123570

ATGGGAGTTGAGAAGCAAATCGTTCGACCTGGAAACGGTCCTAAGCCAACTCCTGGTCAAAACGTCACTGTCCACTGCACCGGATACGGGAAAAACGGTGACCTTTCTCAGAAGTTCTGGAGTACAAAAGATCCTGGCCAGAATCCATTCACTTTCAAAATCGGCAAAGGTTCTGTCATCAAAGGATGGGATGAAGGTGTCATTGGCATGCAAATCGGAGAAGTTGCTCGTCTTCGGTGCTCTCCTGATTATGCTTATGGCGCTAGTGGCTTTCCTGCTTGGGGAATACAACCCAACTCTGTTTTGGAGTTTGAGATTGAGGTCTTGAGTGCAGAATGA
Protein sequence

>Msa1123570

MGVEKQIVRPGNGPKPTPGQNVTVHCTGYGKNGDLSQKFWSTKDPGQNPFTFKIGKGSVIKGWDEGVIGMQIGEVARLRCSPDYAYGASGFPAWGIQPNSVLEFEIEVLSAE*