AlfalfaGEDB | Msa0602920

M. sativa cultivar zhongmu-4 / Msa0602920

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602920	XP_024636636.1	100.000	55	0	0	1	55	1	55	3.47e-32	115

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602920	sp\|P0DO45\|ATP6B_ARATH	81.818	55	10	0	1	55	1	55	7.07e-29	99.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602920	G7JTP1	100.000	55	0	0	1	55	1	55	1.66e-32	115

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003780	Msa0602920	0.810447	1.147682e-50	-8.615850e-47
Msa0037250	Msa0602920	0.803330	3.671160e-49	-8.615850e-47
Msa0056470	Msa0602920	0.825437	4.690682e-54	-8.615850e-47
Msa0082280	Msa0602920	0.807018	6.202538e-50	-8.615850e-47
Msa0140850	Msa0602920	0.816235	6.139782e-52	-8.615850e-47
Msa0146340	Msa0602920	0.832252	1.051246e-55	-8.615850e-47
Msa0199690	Msa0602920	0.800524	1.384419e-48	-8.615850e-47
Msa0268130	Msa0602920	0.802287	6.027996e-49	-8.615850e-47
Msa0298990	Msa0602920	0.804953	1.686314e-49	-8.615850e-47
Msa0304590	Msa0602920	0.825908	3.626957e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602920	MtrunA17_Chr4g0030851	100.000	55	0	0	1	55	1	55	3.19e-36	115
Msa0602920	MtrunA17_Chr2g0327811	89.091	55	6	0	1	55	1	55	7.42e-32	103

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0602920	AT3G46430.1	81.818	55	10	1	55	1	55	7.19e-30	99.4
Msa0602920	AT5G59613.1	81.818	55	10	1	55	1	55	7.19e-30	99.4
Msa0602920	AT5G59613.2	81.818	55	10	1	55	1	55	7.19e-30	99.4

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Find 16 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAGACAGTTCGATCCA+TGG	0.569004	4_2:+46989950	Msa0602920:exon
AAATTCTCTCTTGGTCTTAC+CGG	0.355061	4_2:+46990051	Msa0602920:CDS
AATTCGTTCAGCATCACAAA+AGG	0.536789	4_2:+46990200	Msa0602920:CDS
ACGGCGAATCCAACGAGGAA+TGG	0.540309	4_2:-46990009	None:intergenic
AGAGAGAATGGAAACGTACT+TGG	0.486234	4_2:+46989986	Msa0602920:CDS
CATTCTCTCTTGAAGAAAAC+TGG	0.292105	4_2:-46989973	None:intergenic
CGGTGACGGCGAATCCAACG+AGG	0.732353	4_2:-46990014	None:intergenic
CGTACTTGGCCATTCCTCGT+TGG	0.562709	4_2:+46990000	Msa0602920:CDS
CTCGTTGGATTCGCCGTCAC+CGG	0.441426	4_2:+46990015	Msa0602920:CDS
CTCTTGAAGAAAACTGGCCA+TGG	0.493329	4_2:-46989967	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAATGGTAGAGTTTAGA+TGG	-	chr4_2:46989836-46989855	None:intergenic	30.0%
TGTAACAAAAACCGTAACTT+TGG	+	chr4_2:46989854-46989873	Msa0602920:five_prime_UTR	30.0%
CATTCTCTCTTGAAGAAAAC+TGG	-	chr4_2:46989976-46989995	None:intergenic	35.0%
CTGCAACAGAAACAAAATGA+AGG	-	chr4_2:46990159-46990178	None:intergenic	35.0%
TTTGTGATGCTGAACGAATT+TGG	-	chr4_2:46990200-46990219	None:intergenic	35.0%
AATTCGTTCAGCATCACAAA+AGG	+	chr4_2:46990200-46990219	Msa0602920:CDS	35.0%
TCTTCGTCACACCAAAGTTA+CGG	-	chr4_2:46989868-46989887	None:intergenic	40.0%
AAATGAGACAGTTCGATCCA+TGG	+	chr4_2:46989950-46989969	Msa0602920:exon	40.0%
AGAGAGAATGGAAACGTACT+TGG	+	chr4_2:46989986-46990005	Msa0602920:CDS	40.0%
CTTGTCACCAAATTCTCTCT+TGG	+	chr4_2:46990042-46990061	Msa0602920:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	46989821	46990225	46989821	ID=Msa0602920;Name=Msa0602920
chr4_2	mRNA	46989821	46990225	46989821	ID=Msa0602920-mRNA-1;Parent=Msa0602920;Name=Msa0602920-mRNA-1;_AED=0.28;_eAED=0.28;_QI=131\|1\|0.5\|1\|1\|1\|2\|0\|55
chr4_2	exon	46989821	46990072	46989821	ID=Msa0602920-mRNA-1:exon:10749;Parent=Msa0602920-mRNA-1
chr4_2	exon	46990179	46990225	46990179	ID=Msa0602920-mRNA-1:exon:10750;Parent=Msa0602920-mRNA-1
chr4_2	five_prime_UTR	46989821	46989951	46989821	ID=Msa0602920-mRNA-1:five_prime_utr;Parent=Msa0602920-mRNA-1
chr4_2	CDS	46989952	46990072	46989952	ID=Msa0602920-mRNA-1:cds;Parent=Msa0602920-mRNA-1
chr4_2	CDS	46990179	46990225	46990179	ID=Msa0602920-mRNA-1:cds;Parent=Msa0602920-mRNA-1

Gene Sequence	>Msa0602920 ATGAGACAGTTCGATCCATGGCCAGTTTTCTTCAAGAGAGAATGGAAACGTACTTGGCCATTCCTCGTTGGATTCGCCGTCACCGGAGCTCTTGTCACCAAATTCTCTCTTGGTCTTACCGAGGAAGATGCTAAGAATTCCAAATTCGTTCAGCATCACAAAAGGTAA
Protein sequence	>Msa0602920 MRQFDPWPVFFKREWKRTWPFLVGFAVTGALVTKFSLGLTEEDAKNSKFVQHHKR*