AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692840 MtrunA17_Chr4g0043221 100.000 98 0 0 1 98 1 98 2.34e-66 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692840 AT1G76860.1 89.796 98 9 1 1 98 1 97 9.87e-59 175
Msa0692840 AT1G21190.1 86.458 96 13 0 3 98 2 97 8.05e-58 173

Find 45 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTCCGTTCCTGTTTGTT+AGG 0.219777 4_4:+61510890 Msa0692840:CDS
ATCATTGGCGTTTAAGCTTA+TGG 0.251620 4_4:-61511198 None:intergenic
CATTTCATTGCGAGTGAATA+TGG 0.254325 4_4:+61509384 Msa0692840:five_prime_UTR
CAACATCTTAATATGATTCT+TGG 0.270259 4_4:+61509653 Msa0692840:CDS
GTTTGATGGGGTGTTTGATT+AGG 0.334646 4_4:+61511303 Msa0692840:three_prime_UTR
GACTTCCTGAATCCTAAGTT+TGG 0.356983 4_4:+61511358 Msa0692840:three_prime_UTR
CTAAACCAAACTTAGGATTC+AGG 0.374091 4_4:-61511363 None:intergenic
ATGAACAAGGGTTATACTTA+TGG 0.392555 4_4:+61511143 Msa0692840:three_prime_UTR
CTTGAACCTGGGATGTTTGA+TGG 0.393056 4_4:+61511289 Msa0692840:three_prime_UTR
CGCCATCTCCCCTAACAAAC+AGG 0.401332 4_4:-61510900 None:intergenic
TTCCTGTTTGTTAGGGGAGA+TGG 0.402900 4_4:+61510898 Msa0692840:CDS
TAGGGGAGATGGCGTGATAT+TGG 0.403792 4_4:+61510909 Msa0692840:CDS
TGAAACAAATCAAGAATCAT+TGG 0.427500 4_4:-61511213 None:intergenic
AGTTCCGTTCCTGTTTGTTA+GGG 0.430031 4_4:+61510891 Msa0692840:CDS
AAGCGCAGTGAAGGAGCCTT+TGG 0.436284 4_4:+61509455 Msa0692840:CDS
TTGAACCTGGGATGTTTGAT+GGG 0.449994 4_4:+61511290 Msa0692840:three_prime_UTR
CTTCTAAGTTCTAGTTACAT+TGG 0.450409 4_4:+61511262 Msa0692840:three_prime_UTR
AGACATACGAAGAAATTGTC+AGG 0.452612 4_4:+61509717 Msa0692840:CDS
TACATTGGAGATCTTGAACC+TGG 0.454214 4_4:+61511277 Msa0692840:three_prime_UTR
AGGAAGTCTACAAACTTTGA+AGG 0.454963 4_4:-61511343 None:intergenic
GGAAAAGCTAAACCAAACTT+AGG 0.457822 4_4:-61511370 None:intergenic
GAGGATAATCTAATATCATA+AGG 0.485064 4_4:-61511040 None:intergenic
AGAGGAAGAAAGCGCAGTGA+AGG 0.494057 4_4:+61509446 Msa0692840:CDS
AAGAAGAATGGCGGGGACAG+AGG 0.513464 4_4:+61509428 Msa0692840:exon
AGGAGCCTTTGGATCTCATA+AGG 0.523953 4_4:+61509466 Msa0692840:CDS
AAGCTGTTGTTACATAGAAG+TGG 0.528320 4_4:+61511173 Msa0692840:three_prime_UTR
ACATTGGAGATCTTGAACCT+GGG 0.534216 4_4:+61511278 Msa0692840:three_prime_UTR
TCATGGAATGCTCATGAACA+AGG 0.539148 4_4:+61511130 Msa0692840:three_prime_UTR
CGTTCTGATAGAGAGCTTCG+TGG 0.548358 4_4:+61509522 Msa0692840:CDS
CCACTGAGGACTGCATAACA+TGG 0.569381 4_4:+61510940 Msa0692840:exon
CTGAGCCTTATGAGATCCAA+AGG 0.575025 4_4:-61509471 None:intergenic
GTTCCGTTCCTGTTTGTTAG+GGG 0.578832 4_4:+61510892 Msa0692840:CDS
AACACCCCATCAAACATCCC+AGG 0.610009 4_4:-61511295 None:intergenic
ACTAGCAAACATGCATGTTG+AGG 0.616942 4_4:-61511059 None:intergenic
CACGAAGCTCTCTATCAGAA+CGG 0.619250 4_4:-61509521 None:intergenic
CCATGTTATGCAGTCCTCAG+TGG 0.619717 4_4:-61510940 None:intergenic
TGTTATGCAGTCCTCAGTGG+TGG 0.628383 4_4:-61510937 None:intergenic
TGAACCTGGGATGTTTGATG+GGG 0.635063 4_4:+61511291 Msa0692840:three_prime_UTR
TGTTGAAGAAATTGTTACAA+CGG 0.651927 4_4:+61509679 Msa0692840:CDS
CATGGAATGCTCATGAACAA+GGG 0.663566 4_4:+61511131 Msa0692840:three_prime_UTR
GACATACGAAGAAATTGTCA+GGG 0.666267 4_4:+61509718 Msa0692840:CDS
TCTCCCCTAACAAACAGGAA+CGG 0.688766 4_4:-61510895 None:intergenic
ATCTAATATCATAAGGAACG+AGG 0.696193 4_4:-61511033 None:intergenic
TCTGATTGCAGACTACAAAG+CGG 0.697746 4_4:+61510866 Msa0692840:intron
TATTGGTTTCTCCACCACTG+AGG 0.734600 4_4:+61510926 Msa0692840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAACTTTTGAATAAAATT+TGG + chr4_4:61510487-61510506 Msa0692840:intron 15.0%
!!! AGAAACTTTTGAATAAAATT+TGG + chr4_4:61510487-61510506 Msa0692840:intron 15.0%
!! TAATTTCAATTTCAATTTCC+AGG + chr4_4:61509622-61509641 Msa0692840:intron 20.0%
!! AATTTAAATTCTCCAATTTG+AGG + chr4_4:61510224-61510243 Msa0692840:intron 20.0%
!!! AATTTTTTAGTTCCTCAAAT+TGG - chr4_4:61510239-61510258 None:intergenic 20.0%
!! GAACTAAAAAATTGAAATAG+CGG + chr4_4:61510246-61510265 Msa0692840:intron 20.0%
!!! TTGAGAGTATTATAAAATGA+GGG - chr4_4:61510321-61510340 None:intergenic 20.0%
!!! TTTTGAATAAAATTTGGTTG+TGG + chr4_4:61510493-61510512 Msa0692840:intron 20.0%
!!! ATCACAATTCTGAAAAAATA+AGG - chr4_4:61510642-61510661 None:intergenic 20.0%
!!! TTTTTTATAGACCATTTTGA+TGG - chr4_4:61510785-61510804 None:intergenic 20.0%
!! CAAAATGGTCTATAAAAAAA+AGG + chr4_4:61510786-61510805 Msa0692840:intron 20.0%
!! TAATTTCAATTTCAATTTCC+AGG + chr4_4:61509622-61509641 Msa0692840:intron 20.0%
!! AATTTAAATTCTCCAATTTG+AGG + chr4_4:61510224-61510243 Msa0692840:intron 20.0%
!!! AATTTTTTAGTTCCTCAAAT+TGG - chr4_4:61510239-61510258 None:intergenic 20.0%
!! GAACTAAAAAATTGAAATAG+CGG + chr4_4:61510246-61510265 Msa0692840:intron 20.0%
!!! TTGAGAGTATTATAAAATGA+GGG - chr4_4:61510321-61510340 None:intergenic 20.0%
!!! TTTTGAATAAAATTTGGTTG+TGG + chr4_4:61510493-61510512 Msa0692840:intron 20.0%
!!! ATCACAATTCTGAAAAAATA+AGG - chr4_4:61510642-61510661 None:intergenic 20.0%
!!! TTTTTTATAGACCATTTTGA+TGG - chr4_4:61510785-61510804 None:intergenic 20.0%
!! CAAAATGGTCTATAAAAAAA+AGG + chr4_4:61510786-61510805 Msa0692840:intron 20.0%
! TGAAAGAAAAAAGAGATGAA+AGG - chr4_4:61509574-61509593 None:intergenic 25.0%
! CAACATCTTAATATGATTCT+TGG + chr4_4:61509653-61509672 Msa0692840:CDS 25.0%
! TGTTGAAGAAATTGTTACAA+CGG + chr4_4:61509679-61509698 Msa0692840:CDS 25.0%
!! AAGGATTATTGTAGTTTGTA+AGG + chr4_4:61509846-61509865 Msa0692840:intron 25.0%
!! TAAAAAATTGAAATAGCGGA+GGG + chr4_4:61510250-61510269 Msa0692840:intron 25.0%
!!! TGAGAGTATTATAAAATGAG+GGG - chr4_4:61510320-61510339 None:intergenic 25.0%
!!! GTTGAGAGTATTATAAAATG+AGG - chr4_4:61510322-61510341 None:intergenic 25.0%
! TTATTCAAAAGTTTCTCCTT+CGG - chr4_4:61510483-61510502 None:intergenic 25.0%
!!! TATTTTTTCGATTAGATTGC+TGG + chr4_4:61510596-61510615 Msa0692840:intron 25.0%
!!! ATTTTGAAGATACTTTTCCT+TGG + chr4_4:61510826-61510845 Msa0692840:intron 25.0%
! AGAAAAACAAAAATCATCCA+AGG - chr4_4:61510846-61510865 None:intergenic 25.0%
! GAGGATAATCTAATATCATA+AGG - chr4_4:61511043-61511062 None:intergenic 25.0%
! TGAAACAAATCAAGAATCAT+TGG - chr4_4:61511216-61511235 None:intergenic 25.0%
! TGAAAGAAAAAAGAGATGAA+AGG - chr4_4:61509574-61509593 None:intergenic 25.0%
! CAACATCTTAATATGATTCT+TGG + chr4_4:61509653-61509672 Msa0692840:CDS 25.0%
! TGTTGAAGAAATTGTTACAA+CGG + chr4_4:61509679-61509698 Msa0692840:CDS 25.0%
!! AAGGATTATTGTAGTTTGTA+AGG + chr4_4:61509846-61509865 Msa0692840:intron 25.0%
!! TAAAAAATTGAAATAGCGGA+GGG + chr4_4:61510250-61510269 Msa0692840:intron 25.0%
!!! TGAGAGTATTATAAAATGAG+GGG - chr4_4:61510320-61510339 None:intergenic 25.0%
!!! GTTGAGAGTATTATAAAATG+AGG - chr4_4:61510322-61510341 None:intergenic 25.0%
! TTATTCAAAAGTTTCTCCTT+CGG - chr4_4:61510483-61510502 None:intergenic 25.0%
!!! TATTTTTTCGATTAGATTGC+TGG + chr4_4:61510596-61510615 Msa0692840:intron 25.0%
!!! ATTTTGAAGATACTTTTCCT+TGG + chr4_4:61510826-61510845 Msa0692840:intron 25.0%
! AGAAAAACAAAAATCATCCA+AGG - chr4_4:61510846-61510865 None:intergenic 25.0%
! GAGGATAATCTAATATCATA+AGG - chr4_4:61511043-61511062 None:intergenic 25.0%
! TGAAACAAATCAAGAATCAT+TGG - chr4_4:61511216-61511235 None:intergenic 25.0%
AAGAAGAAGAAGAAGAAGAA+TGG + chr4_4:61509416-61509435 Msa0692840:exon 30.0%
!! ACAGTTGTTGATTTATTGTC+AGG + chr4_4:61509782-61509801 Msa0692840:intron 30.0%
!! CAGTTGTTGATTTATTGTCA+GGG + chr4_4:61509783-61509802 Msa0692840:intron 30.0%
TACCTTCTTCAGTTTGATAA+AGG + chr4_4:61509827-61509846 Msa0692840:intron 30.0%
ATCCTTTATCAAACTGAAGA+AGG - chr4_4:61509832-61509851 None:intergenic 30.0%
!! GTAGTTTGTAAGGTGTTTTA+AGG + chr4_4:61509856-61509875 Msa0692840:intron 30.0%
ACACCTTAAATCTGAATTGT+TGG + chr4_4:61510008-61510027 Msa0692840:intron 30.0%
CTAAAAAATTGAAATAGCGG+AGG + chr4_4:61510249-61510268 Msa0692840:intron 30.0%
! ATGCTTAGGAGAATTTTTCA+AGG - chr4_4:61510296-61510315 None:intergenic 30.0%
AGGTCAATAGTTGAAAGAAA+AGG - chr4_4:61510622-61510641 None:intergenic 30.0%
! ATATCTACTAACTTGTGATC+TGG + chr4_4:61510660-61510679 Msa0692840:intron 30.0%
! TATCTACTAACTTGTGATCT+GGG + chr4_4:61510661-61510680 Msa0692840:intron 30.0%
! AGATGATCCTTTTCTTATCT+GGG - chr4_4:61510699-61510718 None:intergenic 30.0%
! AAGATGATCCTTTTCTTATC+TGG - chr4_4:61510700-61510719 None:intergenic 30.0%
GATAAGAAAAGGATCATCTT+TGG + chr4_4:61510700-61510719 Msa0692840:intron 30.0%
!! TTATAGACCATTTTGATGGT+TGG - chr4_4:61510781-61510800 None:intergenic 30.0%
ATCTAATATCATAAGGAACG+AGG - chr4_4:61511036-61511055 None:intergenic 30.0%
!! TCTTTTTAGCATGAGAATCA+TGG + chr4_4:61511113-61511132 Msa0692840:three_prime_UTR 30.0%
ATGAACAAGGGTTATACTTA+TGG + chr4_4:61511143-61511162 Msa0692840:three_prime_UTR 30.0%
! CTTCTAAGTTCTAGTTACAT+TGG + chr4_4:61511262-61511281 Msa0692840:three_prime_UTR 30.0%
AAGAAGAAGAAGAAGAAGAA+TGG + chr4_4:61509416-61509435 Msa0692840:exon 30.0%
!! ACAGTTGTTGATTTATTGTC+AGG + chr4_4:61509782-61509801 Msa0692840:intron 30.0%
!! CAGTTGTTGATTTATTGTCA+GGG + chr4_4:61509783-61509802 Msa0692840:intron 30.0%
TACCTTCTTCAGTTTGATAA+AGG + chr4_4:61509827-61509846 Msa0692840:intron 30.0%
ATCCTTTATCAAACTGAAGA+AGG - chr4_4:61509832-61509851 None:intergenic 30.0%
!! GTAGTTTGTAAGGTGTTTTA+AGG + chr4_4:61509856-61509875 Msa0692840:intron 30.0%
ACACCTTAAATCTGAATTGT+TGG + chr4_4:61510008-61510027 Msa0692840:intron 30.0%
CTAAAAAATTGAAATAGCGG+AGG + chr4_4:61510249-61510268 Msa0692840:intron 30.0%
! ATGCTTAGGAGAATTTTTCA+AGG - chr4_4:61510296-61510315 None:intergenic 30.0%
AGGTCAATAGTTGAAAGAAA+AGG - chr4_4:61510622-61510641 None:intergenic 30.0%
! ATATCTACTAACTTGTGATC+TGG + chr4_4:61510660-61510679 Msa0692840:intron 30.0%
! TATCTACTAACTTGTGATCT+GGG + chr4_4:61510661-61510680 Msa0692840:intron 30.0%
! AGATGATCCTTTTCTTATCT+GGG - chr4_4:61510699-61510718 None:intergenic 30.0%
! AAGATGATCCTTTTCTTATC+TGG - chr4_4:61510700-61510719 None:intergenic 30.0%
GATAAGAAAAGGATCATCTT+TGG + chr4_4:61510700-61510719 Msa0692840:intron 30.0%
!! TTATAGACCATTTTGATGGT+TGG - chr4_4:61510781-61510800 None:intergenic 30.0%
ATCTAATATCATAAGGAACG+AGG - chr4_4:61511036-61511055 None:intergenic 30.0%
!! TCTTTTTAGCATGAGAATCA+TGG + chr4_4:61511113-61511132 Msa0692840:three_prime_UTR 30.0%
ATGAACAAGGGTTATACTTA+TGG + chr4_4:61511143-61511162 Msa0692840:three_prime_UTR 30.0%
! CTTCTAAGTTCTAGTTACAT+TGG + chr4_4:61511262-61511281 Msa0692840:three_prime_UTR 30.0%
CATTTCATTGCGAGTGAATA+TGG + chr4_4:61509384-61509403 Msa0692840:five_prime_UTR 35.0%
AAGAAGAAGAAGAAGAATGG+CGG + chr4_4:61509419-61509438 Msa0692840:exon 35.0%
TAAGATGTTGATCATAAGCC+TGG - chr4_4:61509643-61509662 None:intergenic 35.0%
AGACATACGAAGAAATTGTC+AGG + chr4_4:61509717-61509736 Msa0692840:CDS 35.0%
GACATACGAAGAAATTGTCA+GGG + chr4_4:61509718-61509737 Msa0692840:CDS 35.0%
ATAAATCAACAACTGTTCGC+AGG - chr4_4:61509778-61509797 None:intergenic 35.0%
TGTGTGAGTTAAGAACTATG+AGG + chr4_4:61509886-61509905 Msa0692840:intron 35.0%
!! AGAACTATGAGGCATTGATA+CGG + chr4_4:61509897-61509916 Msa0692840:intron 35.0%
GCACCAACAATTCAGATTTA+AGG - chr4_4:61510014-61510033 None:intergenic 35.0%
TGACACTAACACTTCAATAC+CGG + chr4_4:61510045-61510064 Msa0692840:intron 35.0%
CTGCTTTCAATAATCATCAC+CGG - chr4_4:61510067-61510086 None:intergenic 35.0%
GAAAAATAAACCGCAAAGCA+AGG - chr4_4:61510198-61510217 None:intergenic 35.0%
ATAAAATGAGGGGAATGCTT+AGG - chr4_4:61510310-61510329 None:intergenic 35.0%
GAGAATCCTTCAACTTGATA+GGG - chr4_4:61510395-61510414 None:intergenic 35.0%
TGTCTTTCCCAGATAAGAAA+AGG + chr4_4:61510689-61510708 Msa0692840:intron 35.0%
AAGCTGTTGTTACATAGAAG+TGG + chr4_4:61511173-61511192 Msa0692840:three_prime_UTR 35.0%
ATCATTGGCGTTTAAGCTTA+TGG - chr4_4:61511201-61511220 None:intergenic 35.0%
AGGAAGTCTACAAACTTTGA+AGG - chr4_4:61511346-61511365 None:intergenic 35.0%
CTAAACCAAACTTAGGATTC+AGG - chr4_4:61511366-61511385 None:intergenic 35.0%
GGAAAAGCTAAACCAAACTT+AGG - chr4_4:61511373-61511392 None:intergenic 35.0%
CATTTCATTGCGAGTGAATA+TGG + chr4_4:61509384-61509403 Msa0692840:five_prime_UTR 35.0%
AAGAAGAAGAAGAAGAATGG+CGG + chr4_4:61509419-61509438 Msa0692840:exon 35.0%
TAAGATGTTGATCATAAGCC+TGG - chr4_4:61509643-61509662 None:intergenic 35.0%
AGACATACGAAGAAATTGTC+AGG + chr4_4:61509717-61509736 Msa0692840:CDS 35.0%
GACATACGAAGAAATTGTCA+GGG + chr4_4:61509718-61509737 Msa0692840:CDS 35.0%
ATAAATCAACAACTGTTCGC+AGG - chr4_4:61509778-61509797 None:intergenic 35.0%
TGTGTGAGTTAAGAACTATG+AGG + chr4_4:61509886-61509905 Msa0692840:intron 35.0%
!! AGAACTATGAGGCATTGATA+CGG + chr4_4:61509897-61509916 Msa0692840:intron 35.0%
GCACCAACAATTCAGATTTA+AGG - chr4_4:61510014-61510033 None:intergenic 35.0%
TGACACTAACACTTCAATAC+CGG + chr4_4:61510045-61510064 Msa0692840:intron 35.0%
CTGCTTTCAATAATCATCAC+CGG - chr4_4:61510067-61510086 None:intergenic 35.0%
GAAAAATAAACCGCAAAGCA+AGG - chr4_4:61510198-61510217 None:intergenic 35.0%
ATAAAATGAGGGGAATGCTT+AGG - chr4_4:61510310-61510329 None:intergenic 35.0%
GAGAATCCTTCAACTTGATA+GGG - chr4_4:61510395-61510414 None:intergenic 35.0%
TGTCTTTCCCAGATAAGAAA+AGG + chr4_4:61510689-61510708 Msa0692840:intron 35.0%
AAGCTGTTGTTACATAGAAG+TGG + chr4_4:61511173-61511192 Msa0692840:three_prime_UTR 35.0%
ATCATTGGCGTTTAAGCTTA+TGG - chr4_4:61511201-61511220 None:intergenic 35.0%
AGGAAGTCTACAAACTTTGA+AGG - chr4_4:61511346-61511365 None:intergenic 35.0%
CTAAACCAAACTTAGGATTC+AGG - chr4_4:61511366-61511385 None:intergenic 35.0%
GGAAAAGCTAAACCAAACTT+AGG - chr4_4:61511373-61511392 None:intergenic 35.0%
AGAAGAAGAAGAAGAATGGC+GGG + chr4_4:61509420-61509439 Msa0692840:exon 40.0%
! GCAGGTCTACAATTTAGCTT+TGG - chr4_4:61509760-61509779 None:intergenic 40.0%
!! GAACTATGAGGCATTGATAC+GGG + chr4_4:61509898-61509917 Msa0692840:intron 40.0%
TGTCTAGTAGCTGACATATG+TGG - chr4_4:61510090-61510109 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+AGG + chr4_4:61510120-61510139 Msa0692840:intron 40.0%
GGAGAATCCTTCAACTTGAT+AGG - chr4_4:61510396-61510415 None:intergenic 40.0%
ATTGAAGTGGAGGGAAAGAA+AGG - chr4_4:61510417-61510436 None:intergenic 40.0%
ATCACGATGGGAAAGGATTT+GGG - chr4_4:61510448-61510467 None:intergenic 40.0%
AATCACGATGGGAAAGGATT+TGG - chr4_4:61510449-61510468 None:intergenic 40.0%
CTTTGTTCAGGAATCACGAT+GGG - chr4_4:61510460-61510479 None:intergenic 40.0%
TCTGATTGCAGACTACAAAG+CGG + chr4_4:61510866-61510885 Msa0692840:intron 40.0%
! AGTTCCGTTCCTGTTTGTTA+GGG + chr4_4:61510891-61510910 Msa0692840:CDS 40.0%
ACTAGCAAACATGCATGTTG+AGG - chr4_4:61511062-61511081 None:intergenic 40.0%
TCATGGAATGCTCATGAACA+AGG + chr4_4:61511130-61511149 Msa0692840:three_prime_UTR 40.0%
CATGGAATGCTCATGAACAA+GGG + chr4_4:61511131-61511150 Msa0692840:three_prime_UTR 40.0%
TACATTGGAGATCTTGAACC+TGG + chr4_4:61511277-61511296 Msa0692840:three_prime_UTR 40.0%
ACATTGGAGATCTTGAACCT+GGG + chr4_4:61511278-61511297 Msa0692840:three_prime_UTR 40.0%
TTGAACCTGGGATGTTTGAT+GGG + chr4_4:61511290-61511309 Msa0692840:three_prime_UTR 40.0%
! GTTTGATGGGGTGTTTGATT+AGG + chr4_4:61511303-61511322 Msa0692840:three_prime_UTR 40.0%
GACTTCCTGAATCCTAAGTT+TGG + chr4_4:61511358-61511377 Msa0692840:three_prime_UTR 40.0%
!!! AGTTTGGTTTAGCTTTTCCC+AGG + chr4_4:61511374-61511393 Msa0692840:three_prime_UTR 40.0%
TCGCAATGAAATGAAACCCT+GGG - chr4_4:61509377-61509396 None:intergenic 40.0%
AGAAGAAGAAGAAGAATGGC+GGG + chr4_4:61509420-61509439 Msa0692840:exon 40.0%
! GCAGGTCTACAATTTAGCTT+TGG - chr4_4:61509760-61509779 None:intergenic 40.0%
!! GAACTATGAGGCATTGATAC+GGG + chr4_4:61509898-61509917 Msa0692840:intron 40.0%
TGTCTAGTAGCTGACATATG+TGG - chr4_4:61510090-61510109 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+AGG + chr4_4:61510120-61510139 Msa0692840:intron 40.0%
GGAGAATCCTTCAACTTGAT+AGG - chr4_4:61510396-61510415 None:intergenic 40.0%
ATTGAAGTGGAGGGAAAGAA+AGG - chr4_4:61510417-61510436 None:intergenic 40.0%
ATCACGATGGGAAAGGATTT+GGG - chr4_4:61510448-61510467 None:intergenic 40.0%
AATCACGATGGGAAAGGATT+TGG - chr4_4:61510449-61510468 None:intergenic 40.0%
CTTTGTTCAGGAATCACGAT+GGG - chr4_4:61510460-61510479 None:intergenic 40.0%
TCTGATTGCAGACTACAAAG+CGG + chr4_4:61510866-61510885 Msa0692840:intron 40.0%
! AGTTCCGTTCCTGTTTGTTA+GGG + chr4_4:61510891-61510910 Msa0692840:CDS 40.0%
ACTAGCAAACATGCATGTTG+AGG - chr4_4:61511062-61511081 None:intergenic 40.0%
TCATGGAATGCTCATGAACA+AGG + chr4_4:61511130-61511149 Msa0692840:three_prime_UTR 40.0%
CATGGAATGCTCATGAACAA+GGG + chr4_4:61511131-61511150 Msa0692840:three_prime_UTR 40.0%
TACATTGGAGATCTTGAACC+TGG + chr4_4:61511277-61511296 Msa0692840:three_prime_UTR 40.0%
ACATTGGAGATCTTGAACCT+GGG + chr4_4:61511278-61511297 Msa0692840:three_prime_UTR 40.0%
TTGAACCTGGGATGTTTGAT+GGG + chr4_4:61511290-61511309 Msa0692840:three_prime_UTR 40.0%
! GTTTGATGGGGTGTTTGATT+AGG + chr4_4:61511303-61511322 Msa0692840:three_prime_UTR 40.0%
GACTTCCTGAATCCTAAGTT+TGG + chr4_4:61511358-61511377 Msa0692840:three_prime_UTR 40.0%
GAAGAAGAAGAAGAATGGCG+GGG + chr4_4:61509421-61509440 Msa0692840:exon 45.0%
AGGAGCCTTTGGATCTCATA+AGG + chr4_4:61509466-61509485 Msa0692840:CDS 45.0%
! CTGAGCCTTATGAGATCCAA+AGG - chr4_4:61509474-61509493 None:intergenic 45.0%
CACGAAGCTCTCTATCAGAA+CGG - chr4_4:61509524-61509543 None:intergenic 45.0%
TGTCTAGCAGCTGACATATG+TGG - chr4_4:61509989-61510008 None:intergenic 45.0%
ACGCCTTCAAGCTGAAATGT+TGG + chr4_4:61510109-61510128 Msa0692840:intron 45.0%
GCACCAACATTTCAGCTTGA+AGG - chr4_4:61510115-61510134 None:intergenic 45.0%
!! TTGGTGCTACATAGGTCAAG+AGG + chr4_4:61510128-61510147 Msa0692840:intron 45.0%
!! TGGTGCTACATAGGTCAAGA+GGG + chr4_4:61510129-61510148 Msa0692840:intron 45.0%
AATAAACCGCAAAGCAAGGC+TGG - chr4_4:61510194-61510213 None:intergenic 45.0%
!! CACTCTCCCTATCAAGTTGA+AGG + chr4_4:61510386-61510405 Msa0692840:intron 45.0%
TGGGAAAGGATTTGGGCAAA+GGG - chr4_4:61510441-61510460 None:intergenic 45.0%
ATGGGAAAGGATTTGGGCAA+AGG - chr4_4:61510442-61510461 None:intergenic 45.0%
TTCAGGAATCACGATGGGAA+AGG - chr4_4:61510455-61510474 None:intergenic 45.0%
! GCTTTGTTCAGGAATCACGA+TGG - chr4_4:61510461-61510480 None:intergenic 45.0%
TGATTCCTGAACAAAGCCGA+AGG + chr4_4:61510464-61510483 Msa0692840:intron 45.0%
!! TTTCTCCTTCGGCTTTGTTC+AGG - chr4_4:61510472-61510491 None:intergenic 45.0%
! CATCAATGAGCACTGCATCT+GGG - chr4_4:61510543-61510562 None:intergenic 45.0%
! TCATCAATGAGCACTGCATC+TGG - chr4_4:61510544-61510563 None:intergenic 45.0%
!! TTTTGATGGTTGGCGCAGAT+TGG - chr4_4:61510771-61510790 None:intergenic 45.0%
ATCTGCGCCAACCATCAAAA+TGG + chr4_4:61510771-61510790 Msa0692840:intron 45.0%
CAGTTCCGTTCCTGTTTGTT+AGG + chr4_4:61510890-61510909 Msa0692840:CDS 45.0%
! GTTCCGTTCCTGTTTGTTAG+GGG + chr4_4:61510892-61510911 Msa0692840:CDS 45.0%
TCTCCCCTAACAAACAGGAA+CGG - chr4_4:61510898-61510917 None:intergenic 45.0%
! TTCCTGTTTGTTAGGGGAGA+TGG + chr4_4:61510898-61510917 Msa0692840:CDS 45.0%
!! TATTGGTTTCTCCACCACTG+AGG + chr4_4:61510926-61510945 Msa0692840:CDS 45.0%
CTTGAACCTGGGATGTTTGA+TGG + chr4_4:61511289-61511308 Msa0692840:three_prime_UTR 45.0%
TGAACCTGGGATGTTTGATG+GGG + chr4_4:61511291-61511310 Msa0692840:three_prime_UTR 45.0%
CTCGCAATGAAATGAAACCC+TGG - chr4_4:61509378-61509397 None:intergenic 45.0%
GAAGAAGAAGAAGAATGGCG+GGG + chr4_4:61509421-61509440 Msa0692840:exon 45.0%
AGGAGCCTTTGGATCTCATA+AGG + chr4_4:61509466-61509485 Msa0692840:CDS 45.0%
! CTGAGCCTTATGAGATCCAA+AGG - chr4_4:61509474-61509493 None:intergenic 45.0%
CACGAAGCTCTCTATCAGAA+CGG - chr4_4:61509524-61509543 None:intergenic 45.0%
TGTCTAGCAGCTGACATATG+TGG - chr4_4:61509989-61510008 None:intergenic 45.0%
ACGCCTTCAAGCTGAAATGT+TGG + chr4_4:61510109-61510128 Msa0692840:intron 45.0%
GCACCAACATTTCAGCTTGA+AGG - chr4_4:61510115-61510134 None:intergenic 45.0%
!! TTGGTGCTACATAGGTCAAG+AGG + chr4_4:61510128-61510147 Msa0692840:intron 45.0%
!! TGGTGCTACATAGGTCAAGA+GGG + chr4_4:61510129-61510148 Msa0692840:intron 45.0%
AATAAACCGCAAAGCAAGGC+TGG - chr4_4:61510194-61510213 None:intergenic 45.0%
!! CACTCTCCCTATCAAGTTGA+AGG + chr4_4:61510386-61510405 Msa0692840:intron 45.0%
TGGGAAAGGATTTGGGCAAA+GGG - chr4_4:61510441-61510460 None:intergenic 45.0%
ATGGGAAAGGATTTGGGCAA+AGG - chr4_4:61510442-61510461 None:intergenic 45.0%
TTCAGGAATCACGATGGGAA+AGG - chr4_4:61510455-61510474 None:intergenic 45.0%
! GCTTTGTTCAGGAATCACGA+TGG - chr4_4:61510461-61510480 None:intergenic 45.0%
TGATTCCTGAACAAAGCCGA+AGG + chr4_4:61510464-61510483 Msa0692840:intron 45.0%
!! TTTCTCCTTCGGCTTTGTTC+AGG - chr4_4:61510472-61510491 None:intergenic 45.0%
! CATCAATGAGCACTGCATCT+GGG - chr4_4:61510543-61510562 None:intergenic 45.0%
! TCATCAATGAGCACTGCATC+TGG - chr4_4:61510544-61510563 None:intergenic 45.0%
!! TTTTGATGGTTGGCGCAGAT+TGG - chr4_4:61510771-61510790 None:intergenic 45.0%
ATCTGCGCCAACCATCAAAA+TGG + chr4_4:61510771-61510790 Msa0692840:intron 45.0%
CAGTTCCGTTCCTGTTTGTT+AGG + chr4_4:61510890-61510909 Msa0692840:CDS 45.0%
! GTTCCGTTCCTGTTTGTTAG+GGG + chr4_4:61510892-61510911 Msa0692840:CDS 45.0%
TCTCCCCTAACAAACAGGAA+CGG - chr4_4:61510898-61510917 None:intergenic 45.0%
! TTCCTGTTTGTTAGGGGAGA+TGG + chr4_4:61510898-61510917 Msa0692840:CDS 45.0%
!! TATTGGTTTCTCCACCACTG+AGG + chr4_4:61510926-61510945 Msa0692840:CDS 45.0%
CTTGAACCTGGGATGTTTGA+TGG + chr4_4:61511289-61511308 Msa0692840:three_prime_UTR 45.0%
TGAACCTGGGATGTTTGATG+GGG + chr4_4:61511291-61511310 Msa0692840:three_prime_UTR 45.0%
! AGAGGAAGAAAGCGCAGTGA+AGG + chr4_4:61509446-61509465 Msa0692840:CDS 50.0%
CGTTCTGATAGAGAGCTTCG+TGG + chr4_4:61509522-61509541 Msa0692840:CDS 50.0%
! GGTGCTACATAGGTCAAGAG+GGG + chr4_4:61510130-61510149 Msa0692840:intron 50.0%
CTACATAGGTCAAGAGGGGT+AGG + chr4_4:61510134-61510153 Msa0692840:intron 50.0%
ATAGGTCAAGAGGGGTAGGA+AGG + chr4_4:61510138-61510157 Msa0692840:intron 50.0%
AGGAGAGGTAAGCGAAAGAG+AGG + chr4_4:61510161-61510180 Msa0692840:intron 50.0%
TAGTCTCCAGCCTTGCTTTG+CGG + chr4_4:61510185-61510204 Msa0692840:intron 50.0%
GCAAAGGGGATTGAAGTGGA+GGG - chr4_4:61510426-61510445 None:intergenic 50.0%
TTGGGCAAAGGGGATTGAAG+TGG - chr4_4:61510430-61510449 None:intergenic 50.0%
GGGAAAGGATTTGGGCAAAG+GGG - chr4_4:61510440-61510459 None:intergenic 50.0%
TAGGGGAGATGGCGTGATAT+TGG + chr4_4:61510909-61510928 Msa0692840:CDS 50.0%
TGTTATGCAGTCCTCAGTGG+TGG - chr4_4:61510940-61510959 None:intergenic 50.0%
CCATGTTATGCAGTCCTCAG+TGG - chr4_4:61510943-61510962 None:intergenic 50.0%
CCACTGAGGACTGCATAACA+TGG + chr4_4:61510940-61510959 Msa0692840:exon 50.0%
AACACCCCATCAAACATCCC+AGG - chr4_4:61511298-61511317 None:intergenic 50.0%
! AGAGGAAGAAAGCGCAGTGA+AGG + chr4_4:61509446-61509465 Msa0692840:CDS 50.0%
CGTTCTGATAGAGAGCTTCG+TGG + chr4_4:61509522-61509541 Msa0692840:CDS 50.0%
! GGTGCTACATAGGTCAAGAG+GGG + chr4_4:61510130-61510149 Msa0692840:intron 50.0%
CTACATAGGTCAAGAGGGGT+AGG + chr4_4:61510134-61510153 Msa0692840:intron 50.0%
ATAGGTCAAGAGGGGTAGGA+AGG + chr4_4:61510138-61510157 Msa0692840:intron 50.0%
AGGAGAGGTAAGCGAAAGAG+AGG + chr4_4:61510161-61510180 Msa0692840:intron 50.0%
TAGTCTCCAGCCTTGCTTTG+CGG + chr4_4:61510185-61510204 Msa0692840:intron 50.0%
GCAAAGGGGATTGAAGTGGA+GGG - chr4_4:61510426-61510445 None:intergenic 50.0%
TTGGGCAAAGGGGATTGAAG+TGG - chr4_4:61510430-61510449 None:intergenic 50.0%
GGGAAAGGATTTGGGCAAAG+GGG - chr4_4:61510440-61510459 None:intergenic 50.0%
TAGGGGAGATGGCGTGATAT+TGG + chr4_4:61510909-61510928 Msa0692840:CDS 50.0%
TGTTATGCAGTCCTCAGTGG+TGG - chr4_4:61510940-61510959 None:intergenic 50.0%
CCATGTTATGCAGTCCTCAG+TGG - chr4_4:61510943-61510962 None:intergenic 50.0%
CCACTGAGGACTGCATAACA+TGG + chr4_4:61510940-61510959 Msa0692840:exon 50.0%
AACACCCCATCAAACATCCC+AGG - chr4_4:61511298-61511317 None:intergenic 50.0%
! AAGAAGAATGGCGGGGACAG+AGG + chr4_4:61509428-61509447 Msa0692840:exon 55.0%
AAGCGCAGTGAAGGAGCCTT+TGG + chr4_4:61509455-61509474 Msa0692840:CDS 55.0%
!! CGGAGGGCTTTCGAGTGTTT+TGG + chr4_4:61510266-61510285 Msa0692840:intron 55.0%
GGCAAAGGGGATTGAAGTGG+AGG - chr4_4:61510427-61510446 None:intergenic 55.0%
CGCCATCTCCCCTAACAAAC+AGG - chr4_4:61510903-61510922 None:intergenic 55.0%
! AAGAAGAATGGCGGGGACAG+AGG + chr4_4:61509428-61509447 Msa0692840:exon 55.0%
AAGCGCAGTGAAGGAGCCTT+TGG + chr4_4:61509455-61509474 Msa0692840:CDS 55.0%
!! CGGAGGGCTTTCGAGTGTTT+TGG + chr4_4:61510266-61510285 Msa0692840:intron 55.0%
GGCAAAGGGGATTGAAGTGG+AGG - chr4_4:61510427-61510446 None:intergenic 55.0%
CGCCATCTCCCCTAACAAAC+AGG - chr4_4:61510903-61510922 None:intergenic 55.0%
GGTCAAGAGGGGTAGGAAGG+AGG + chr4_4:61510141-61510160 Msa0692840:intron 60.0%
AGAGGGGTAGGAAGGAGGAG+AGG + chr4_4:61510146-61510165 Msa0692840:intron 60.0%
GGTCAAGAGGGGTAGGAAGG+AGG + chr4_4:61510141-61510160 Msa0692840:intron 60.0%
AGAGGGGTAGGAAGGAGGAG+AGG + chr4_4:61510146-61510165 Msa0692840:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61509377 61511393 61509377 ID=Msa0692840;Name=Msa0692840
chr4_4 mRNA 61509377 61511393 61509377 ID=Msa0692840-mRNA-1;Parent=Msa0692840;Name=Msa0692840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=58|1|1|1|1|1|3|436|98
chr4_4 exon 61509377 61509554 61509377 ID=Msa0692840-mRNA-1:exon:17037;Parent=Msa0692840-mRNA-1
chr4_4 exon 61509644 61509739 61509644 ID=Msa0692840-mRNA-1:exon:17038;Parent=Msa0692840-mRNA-1
chr4_4 exon 61510877 61511393 61510877 ID=Msa0692840-mRNA-1:exon:17039;Parent=Msa0692840-mRNA-1
chr4_4 five_prime_UTR 61509377 61509434 61509377 ID=Msa0692840-mRNA-1:five_prime_utr;Parent=Msa0692840-mRNA-1
chr4_4 CDS 61509435 61509554 61509435 ID=Msa0692840-mRNA-1:cds;Parent=Msa0692840-mRNA-1
chr4_4 CDS 61509644 61509739 61509644 ID=Msa0692840-mRNA-1:cds;Parent=Msa0692840-mRNA-1
chr4_4 CDS 61510877 61510957 61510877 ID=Msa0692840-mRNA-1:cds;Parent=Msa0692840-mRNA-1
chr4_4 three_prime_UTR 61510958 61511393 61510958 ID=Msa0692840-mRNA-1:three_prime_utr;Parent=Msa0692840-mRNA-1
Gene Sequence

>Msa0692840

ATGGCGGGGACAGAGGAAGAAAGCGCAGTGAAGGAGCCTTTGGATCTCATAAGGCTCAGTCTCGACGAACGTATCTACGTTAAACTCCGTTCTGATAGAGAGCTTCGTGGAAAACTTCATGCTTATGATCAACATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACAACGGTTGAAATTGATGATGAGACATACGAAGAAATTGTCAGGACTACAAAGCGGACAGTTCCGTTCCTGTTTGTTAGGGGAGATGGCGTGATATTGGTTTCTCCACCACTGAGGACTGCATAA

Protein sequence

>Msa0692840

MAGTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA*