AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1370860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370860 MtrunA17_Chr1g0195571 98.113 106 2 0 1 106 1 106 5.72e-73 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370860 AT3G62810.1 59.615 104 41 1 1 104 1 103 6.21e-40 128
Msa1370860 AT3G62810.2 59.615 104 41 1 1 104 1 103 6.21e-40 128

Find 54 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTAACTAGTTAGTCAAAA+TGG 0.286419 tig0019143:-163598 None:intergenic
TGGCCTGTGCAAGAAGCTTC+TGG 0.299331 tig0019143:-159860 None:intergenic
GCGGTCATTCAAATAATTGA+TGG 0.371013 tig0019143:+163696 Msa1370860:three_prime_UTR
ACTAACTAGTTAAACACAAT+TGG 0.387084 tig0019143:+163606 Msa1370860:three_prime_UTR
CGTCTCTACCATGCTCGTTC+AGG 0.394653 tig0019143:+159899 Msa1370860:CDS
AATAATGATGCCGGCAGTTA+TGG 0.401922 tig0019143:+159930 Msa1370860:CDS
GAAGAAATTATTCGTAAGTC+AGG 0.412402 tig0019143:+161764 Msa1370860:CDS
GACGAACTCAGCGGCCTCAT+TGG 0.423868 tig0019143:-159880 None:intergenic
CTAAGATCAAAGGCTGGACT+CGG 0.426422 tig0019143:+163535 Msa1370860:three_prime_UTR
GCCGACGAATGATTTCTTAG+TGG 0.431991 tig0019143:-159754 None:intergenic
GGCAAGTTCTGAGCGCGTAC+AGG 0.438135 tig0019143:+159718 Msa1370860:CDS
TTTCTTCTGATGGGATTTCA+AGG 0.447514 tig0019143:-161748 None:intergenic
ACGTCGTGTCTTACTGCATT+AGG 0.463402 tig0019143:+159643 None:intergenic
TACGAATAATTTCTTCTGAT+GGG 0.470935 tig0019143:-161757 None:intergenic
TTACGAATAATTTCTTCTGA+TGG 0.472202 tig0019143:-161758 None:intergenic
TCCTTTCGTTTCCTTCAGAC+TGG 0.480601 tig0019143:-159672 None:intergenic
AAGCTTCTGGATCTCCGCTT+CGG 0.492235 tig0019143:-159847 None:intergenic
TTTGTTGCAGTAGTGAAGCC+TGG 0.498315 tig0019143:+161704 Msa1370860:intron
AACTAGTTAAACACAATTGG+TGG 0.520423 tig0019143:+163609 Msa1370860:three_prime_UTR
TTCTTCTGATGGGATTTCAA+GGG 0.527691 tig0019143:-161747 None:intergenic
GATCCAGAAGCTTCTTGCAC+AGG 0.529541 tig0019143:+159857 Msa1370860:CDS
GTAGCACATAAAGTTTGTGT+TGG 0.537752 tig0019143:-163513 None:intergenic
CTGAAGGAAACGAAAGGAGT+AGG 0.542066 tig0019143:+159677 Msa1370860:five_prime_UTR
AGGGCAGAGAGATGACGAAA+GGG 0.544928 tig0019143:+159697 Msa1370860:exon
GCTGAAGGGATCTGCGGCTG+AGG 0.549347 tig0019143:+159788 Msa1370860:CDS
TGAAGGAAACGAAAGGAGTA+GGG 0.555103 tig0019143:+159678 Msa1370860:five_prime_UTR
GGATAAAGATAGAAGTGAAG+AGG 0.557219 tig0019143:+161785 Msa1370860:exon
TAGGGCAGAGAGATGACGAA+AGG 0.559316 tig0019143:+159696 Msa1370860:exon
CGGCGATCATCATATGCTGA+AGG 0.569382 tig0019143:+159773 Msa1370860:CDS
GCAAGTTCTGAGCGCGTACA+GGG 0.570115 tig0019143:+159719 Msa1370860:CDS
GTAAGCAGTTTGAAGAAAGC+AGG 0.570580 tig0019143:+159814 Msa1370860:CDS
CACATAAATTTCAGCTACCA+AGG 0.572185 tig0019143:-163645 None:intergenic
CTTCTGGATCTCCGCTTCGG+AGG 0.573783 tig0019143:-159844 None:intergenic
TTATGTGCTACTAAGATCAA+AGG 0.581880 tig0019143:+163525 Msa1370860:three_prime_UTR
GCACCACTCAATAATGATGC+CGG 0.582849 tig0019143:+159921 Msa1370860:CDS
AGATAGAGTACCATAACTGC+CGG 0.589190 tig0019143:-159940 None:intergenic
GTGCTACTAAGATCAAAGGC+TGG 0.601166 tig0019143:+163529 Msa1370860:three_prime_UTR
AATTTCAGCTACCAAGGTGA+TGG 0.603196 tig0019143:-163639 None:intergenic
TAAGATCAAAGGCTGGACTC+GGG 0.611825 tig0019143:+163536 Msa1370860:three_prime_UTR
TTAGGCTACTACCAGTCTGA+AGG 0.618703 tig0019143:+159661 Msa1370860:five_prime_UTR
GGCGATCATCATATGCTGAA+GGG 0.625903 tig0019143:+159774 Msa1370860:CDS
GTGTTGGTTTAAAATACAAG+AGG 0.630776 tig0019143:-163497 None:intergenic
GCTTCTTGCACAGGCCAATG+AGG 0.635222 tig0019143:+159866 Msa1370860:CDS
TGCAAGGACTAGCAAGATTG+CGG 0.637629 tig0019143:+163677 Msa1370860:three_prime_UTR
GCCACTAAGAAATCATTCGT+CGG 0.643670 tig0019143:+159753 Msa1370860:CDS
CTGCCGGCATCATTATTGAG+TGG 0.657290 tig0019143:-159924 None:intergenic
AGTTCTGAGCGCGTACAGGG+CGG 0.662417 tig0019143:+159722 Msa1370860:CDS
ACCAGTCTGAAGGAAACGAA+AGG 0.664055 tig0019143:+159671 Msa1370860:five_prime_UTR
AAGCCTGGAAAAGAGCATGC+TGG 0.668843 tig0019143:+161719 Msa1370860:CDS
CAGGAATGTCACCTCCGAAG+CGG 0.670986 tig0019143:+159833 Msa1370860:CDS
GAGTGGTGCCTGAACGAGCA+TGG 0.673907 tig0019143:-159907 None:intergenic
TCATATGCTGAAGGGATCTG+CGG 0.675279 tig0019143:+159782 Msa1370860:CDS
GTGGCAATGTGCCATCACCT+TGG 0.676770 tig0019143:+163628 Msa1370860:three_prime_UTR
CATGGTAGAGACGAACTCAG+CGG 0.745728 tig0019143:-159889 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATTAATTTAAAAAATAC+AGG + tig0019143:160891-160910 Msa1370860:intron 10.0%
!! ATTTAATTCTTTCAAATTTA+AGG + tig0019143:162273-162292 Msa1370860:intron 10.0%
!! TTTAATTCTTTCAAATTTAA+GGG + tig0019143:162274-162293 Msa1370860:intron 10.0%
!!! TTTATTTTTAAACAATGTAT+CGG - tig0019143:162389-162408 None:intergenic 10.0%
!! ACTATTAATTTAAAAAATAC+AGG + tig0019143:160891-160910 Msa1370860:intron 10.0%
!! ATTTAATTCTTTCAAATTTA+AGG + tig0019143:162273-162292 Msa1370860:intron 10.0%
!! TTTAATTCTTTCAAATTTAA+GGG + tig0019143:162274-162293 Msa1370860:intron 10.0%
!!! TTTATTTTTAAACAATGTAT+CGG - tig0019143:162389-162408 None:intergenic 10.0%
!!! TGTCAACTTATATATTTTTA+TGG + tig0019143:160602-160621 Msa1370860:intron 15.0%
!!! TATAGTCCATTTTTATAAAT+TGG + tig0019143:160703-160722 Msa1370860:intron 15.0%
!!! ATAGTCCATTTTTATAAATT+GGG + tig0019143:160704-160723 Msa1370860:intron 15.0%
!! AAAAACCTTGTAATAATAAT+GGG - tig0019143:161416-161435 None:intergenic 15.0%
!! AAAAAACCTTGTAATAATAA+TGG - tig0019143:161417-161436 None:intergenic 15.0%
!!! TAGATTGTTTATTTTTGTTT+AGG + tig0019143:161831-161850 Msa1370860:intron 15.0%
!! CCAAATGAATATAAAATATA+GGG - tig0019143:161999-162018 None:intergenic 15.0%
!!! CCTATATTTTATATTCATTT+GGG + tig0019143:161997-162016 Msa1370860:intron 15.0%
!!! TTATTTTTAAACAATGTATC+GGG - tig0019143:162388-162407 None:intergenic 15.0%
!!! ATAATATGATAAAAGGTATA+GGG + tig0019143:162628-162647 Msa1370860:intron 15.0%
!! CTATTGTTAAAAAAAAACTT+AGG + tig0019143:162852-162871 Msa1370860:intron 15.0%
!!! ATTAAAATAGAGTTGATATT+CGG - tig0019143:163342-163361 None:intergenic 15.0%
!!! TGTCAACTTATATATTTTTA+TGG + tig0019143:160602-160621 Msa1370860:intron 15.0%
!!! TATAGTCCATTTTTATAAAT+TGG + tig0019143:160703-160722 Msa1370860:intron 15.0%
!!! ATAGTCCATTTTTATAAATT+GGG + tig0019143:160704-160723 Msa1370860:intron 15.0%
!! AAAAACCTTGTAATAATAAT+GGG - tig0019143:161416-161435 None:intergenic 15.0%
!! AAAAAACCTTGTAATAATAA+TGG - tig0019143:161417-161436 None:intergenic 15.0%
!!! TAGATTGTTTATTTTTGTTT+AGG + tig0019143:161831-161850 Msa1370860:intron 15.0%
!! CCAAATGAATATAAAATATA+GGG - tig0019143:161999-162018 None:intergenic 15.0%
!!! CCTATATTTTATATTCATTT+GGG + tig0019143:161997-162016 Msa1370860:intron 15.0%
!!! TTATTTTTAAACAATGTATC+GGG - tig0019143:162388-162407 None:intergenic 15.0%
!!! ATAATATGATAAAAGGTATA+GGG + tig0019143:162628-162647 Msa1370860:intron 15.0%
!! CTATTGTTAAAAAAAAACTT+AGG + tig0019143:162852-162871 Msa1370860:intron 15.0%
!!! ATTAAAATAGAGTTGATATT+CGG - tig0019143:163342-163361 None:intergenic 15.0%
!!! TTTTTGTATAAGCTATAAGA+TGG - tig0019143:160249-160268 None:intergenic 20.0%
!! ATTTGCAGATTATCAAATAA+GGG - tig0019143:160522-160541 None:intergenic 20.0%
!! AATTTGCAGATTATCAAATA+AGG - tig0019143:160523-160542 None:intergenic 20.0%
!! AACTTAGTTTCAACTTAAAT+AGG + tig0019143:160660-160679 Msa1370860:intron 20.0%
!!! ATTTCTAAAACAAGATATGA+TGG + tig0019143:160964-160983 Msa1370860:intron 20.0%
!! TATAAGTTCATAAGTGTTTA+TGG + tig0019143:161512-161531 Msa1370860:intron 20.0%
!!! CCCTATATTTTATATTCATT+TGG + tig0019143:161996-162015 Msa1370860:intron 20.0%
!! CCCAAATGAATATAAAATAT+AGG - tig0019143:162000-162019 None:intergenic 20.0%
!!! TTTTATATTCATTTGGGTTT+TGG + tig0019143:162003-162022 Msa1370860:intron 20.0%
!!! TTTATATTCATTTGGGTTTT+GGG + tig0019143:162004-162023 Msa1370860:intron 20.0%
!!! TATTTTTAAACAATGTATCG+GGG - tig0019143:162387-162406 None:intergenic 20.0%
!! TTAGGTCATAATATGATAAA+AGG + tig0019143:162621-162640 Msa1370860:intron 20.0%
!!! CATAATATGATAAAAGGTAT+AGG + tig0019143:162627-162646 Msa1370860:intron 20.0%
!!! TAATATGATAAAAGGTATAG+GGG + tig0019143:162629-162648 Msa1370860:intron 20.0%
!!! TCTCTTTTTATGCAAATTAT+CGG - tig0019143:163028-163047 None:intergenic 20.0%
!!! TTTTTGTATAAGCTATAAGA+TGG - tig0019143:160249-160268 None:intergenic 20.0%
!! ATTTGCAGATTATCAAATAA+GGG - tig0019143:160522-160541 None:intergenic 20.0%
!! AATTTGCAGATTATCAAATA+AGG - tig0019143:160523-160542 None:intergenic 20.0%
!! AACTTAGTTTCAACTTAAAT+AGG + tig0019143:160660-160679 Msa1370860:intron 20.0%
!!! ATTTCTAAAACAAGATATGA+TGG + tig0019143:160964-160983 Msa1370860:intron 20.0%
!! TATAAGTTCATAAGTGTTTA+TGG + tig0019143:161512-161531 Msa1370860:intron 20.0%
!!! CCCTATATTTTATATTCATT+TGG + tig0019143:161996-162015 Msa1370860:intron 20.0%
!! CCCAAATGAATATAAAATAT+AGG - tig0019143:162000-162019 None:intergenic 20.0%
!!! TTTTATATTCATTTGGGTTT+TGG + tig0019143:162003-162022 Msa1370860:intron 20.0%
!!! TTTATATTCATTTGGGTTTT+GGG + tig0019143:162004-162023 Msa1370860:intron 20.0%
!!! TATTTTTAAACAATGTATCG+GGG - tig0019143:162387-162406 None:intergenic 20.0%
!! TTAGGTCATAATATGATAAA+AGG + tig0019143:162621-162640 Msa1370860:intron 20.0%
!!! CATAATATGATAAAAGGTAT+AGG + tig0019143:162627-162646 Msa1370860:intron 20.0%
!!! TAATATGATAAAAGGTATAG+GGG + tig0019143:162629-162648 Msa1370860:intron 20.0%
!!! TCTCTTTTTATGCAAATTAT+CGG - tig0019143:163028-163047 None:intergenic 20.0%
!! GTTCTATGTAATCATTGTTT+TGG + tig0019143:160032-160051 Msa1370860:intron 25.0%
!!! TACTTTTTGTTGTTTTCAAG+TGG + tig0019143:160064-160083 Msa1370860:intron 25.0%
!! AAGAACCATGAACTAATTTT+AGG - tig0019143:160567-160586 None:intergenic 25.0%
! TGAGACCCAATTTATAAAAA+TGG - tig0019143:160712-160731 None:intergenic 25.0%
! TTTACTATCTTACTAGACTA+TGG + tig0019143:160840-160859 Msa1370860:intron 25.0%
!! AAGCAGAGAAAAGTTTATTT+TGG + tig0019143:161134-161153 Msa1370860:intron 25.0%
!!! AGCAGAGAAAAGTTTATTTT+GGG + tig0019143:161135-161154 Msa1370860:intron 25.0%
!! GTTTCTGAAGAAAATAAGAT+AGG + tig0019143:161349-161368 Msa1370860:intron 25.0%
! GAAAACCCATTATTATTACA+AGG + tig0019143:161408-161427 Msa1370860:intron 25.0%
! TACGAATAATTTCTTCTGAT+GGG - tig0019143:161760-161779 None:intergenic 25.0%
! TTACGAATAATTTCTTCTGA+TGG - tig0019143:161761-161780 None:intergenic 25.0%
! AAATCATACAACACATTGAA+AGG - tig0019143:161932-161951 None:intergenic 25.0%
! ATGGTTATTTACAACTTACA+AGG + tig0019143:162090-162109 Msa1370860:intron 25.0%
! TCAAAACAATCAATAAACCA+TGG + tig0019143:162475-162494 Msa1370860:intron 25.0%
!! TATAATTATCGATGTTGCTT+AGG + tig0019143:162603-162622 Msa1370860:intron 25.0%
! AATAAACTATGAAATGCTAC+AGG - tig0019143:163169-163188 None:intergenic 25.0%
! AACAAGGTTTAATCAGTTAA+TGG - tig0019143:163366-163385 None:intergenic 25.0%
! GTTTAACTAGTTAGTCAAAA+TGG - tig0019143:163601-163620 None:intergenic 25.0%
! ACTAACTAGTTAAACACAAT+TGG + tig0019143:163606-163625 Msa1370860:three_prime_UTR 25.0%
!! GTTCTATGTAATCATTGTTT+TGG + tig0019143:160032-160051 Msa1370860:intron 25.0%
!!! TACTTTTTGTTGTTTTCAAG+TGG + tig0019143:160064-160083 Msa1370860:intron 25.0%
!! AAGAACCATGAACTAATTTT+AGG - tig0019143:160567-160586 None:intergenic 25.0%
! TGAGACCCAATTTATAAAAA+TGG - tig0019143:160712-160731 None:intergenic 25.0%
! TTTACTATCTTACTAGACTA+TGG + tig0019143:160840-160859 Msa1370860:intron 25.0%
!! AAGCAGAGAAAAGTTTATTT+TGG + tig0019143:161134-161153 Msa1370860:intron 25.0%
!!! AGCAGAGAAAAGTTTATTTT+GGG + tig0019143:161135-161154 Msa1370860:intron 25.0%
!! GTTTCTGAAGAAAATAAGAT+AGG + tig0019143:161349-161368 Msa1370860:intron 25.0%
! GAAAACCCATTATTATTACA+AGG + tig0019143:161408-161427 Msa1370860:intron 25.0%
! TACGAATAATTTCTTCTGAT+GGG - tig0019143:161760-161779 None:intergenic 25.0%
! TTACGAATAATTTCTTCTGA+TGG - tig0019143:161761-161780 None:intergenic 25.0%
! AAATCATACAACACATTGAA+AGG - tig0019143:161932-161951 None:intergenic 25.0%
! ATGGTTATTTACAACTTACA+AGG + tig0019143:162090-162109 Msa1370860:intron 25.0%
! TCAAAACAATCAATAAACCA+TGG + tig0019143:162475-162494 Msa1370860:intron 25.0%
!! TATAATTATCGATGTTGCTT+AGG + tig0019143:162603-162622 Msa1370860:intron 25.0%
! AATAAACTATGAAATGCTAC+AGG - tig0019143:163169-163188 None:intergenic 25.0%
! AACAAGGTTTAATCAGTTAA+TGG - tig0019143:163366-163385 None:intergenic 25.0%
! GTTTAACTAGTTAGTCAAAA+TGG - tig0019143:163601-163620 None:intergenic 25.0%
! ACTAACTAGTTAAACACAAT+TGG + tig0019143:163606-163625 Msa1370860:three_prime_UTR 25.0%
AGTGAAACAAATAATCGAAC+AGG - tig0019143:159984-160003 None:intergenic 30.0%
GTTCGATTATTTGTTTCACT+TGG + tig0019143:159984-160003 Msa1370860:intron 30.0%
!! ATTGTTGTTTAGGATCAGTT+TGG + tig0019143:160095-160114 Msa1370860:intron 30.0%
TTATGAGTCCTTCTTAACTA+AGG + tig0019143:160131-160150 Msa1370860:intron 30.0%
TATGAGTCCTTCTTAACTAA+GGG + tig0019143:160132-160151 Msa1370860:intron 30.0%
! AACTAAGGGTGTGTTTAAAT+TGG + tig0019143:160146-160165 Msa1370860:intron 30.0%
GGTGTGTTTAAATTGGATTA+TGG + tig0019143:160153-160172 Msa1370860:intron 30.0%
GAAACAGTTTATGACATGTT+CGG + tig0019143:160175-160194 Msa1370860:intron 30.0%
CTTGGAGAGCTTATAAAAAT+AGG - tig0019143:160213-160232 None:intergenic 30.0%
!!! GATGGTTTTATAAGCTATCT+TGG - tig0019143:160231-160250 None:intergenic 30.0%
! GATTTGAGTTAAGGGATTAA+AGG + tig0019143:160390-160409 Msa1370860:intron 30.0%
AAAGGAATTGATGAGTCAAA+TGG + tig0019143:160408-160427 Msa1370860:intron 30.0%
! AACTAATTTTAGGCTCTGTT+TGG - tig0019143:160557-160576 None:intergenic 30.0%
TCAGCAGGTAATTATAGAAA+GGG - tig0019143:160789-160808 None:intergenic 30.0%
TGAGAAGTTTATGCAAACAT+GGG + tig0019143:160806-160825 Msa1370860:intron 30.0%
AATTGAGATGTACACATATG+TGG - tig0019143:160920-160939 None:intergenic 30.0%
! TTGATTACACCATTTCTAGA+TGG - tig0019143:161004-161023 None:intergenic 30.0%
CTCTTAGTTGTAAGTCAAAA+AGG + tig0019143:161485-161504 Msa1370860:intron 30.0%
!!! GAGAGTGTCTGAAAAATTTT+AGG + tig0019143:161546-161565 Msa1370860:intron 30.0%
AGAAAGATTCAGAACTAGTT+TGG - tig0019143:161666-161685 None:intergenic 30.0%
GAAGAAATTATTCGTAAGTC+AGG + tig0019143:161764-161783 Msa1370860:CDS 30.0%
TAAGTAATGATTCTAGTGCT+TGG + tig0019143:161859-161878 Msa1370860:intron 30.0%
AAGTAATGATTCTAGTGCTT+GGG + tig0019143:161860-161879 Msa1370860:intron 30.0%
! GTTTCTTTTTGTGGTAGTAT+TGG + tig0019143:161902-161921 Msa1370860:intron 30.0%
! TTTTGTCTCTTCATTCTCAA+AGG - tig0019143:162151-162170 None:intergenic 30.0%
ATGAAGAGACAAAACTGAAA+TGG + tig0019143:162157-162176 Msa1370860:intron 30.0%
TGAAGAGACAAAACTGAAAT+GGG + tig0019143:162158-162177 Msa1370860:intron 30.0%
!! TAGAAGTACTAAAACTCAAG+TGG + tig0019143:162233-162252 Msa1370860:intron 30.0%
TAACTCTCAAAATTGAACAC+TGG - tig0019143:162555-162574 None:intergenic 30.0%
ATTCTTACACTGATGAACAA+TGG - tig0019143:162670-162689 None:intergenic 30.0%
ACTATAGAGTGGAGTTTATT+TGG + tig0019143:162709-162728 Msa1370860:intron 30.0%
ATTCCTGATTTCATTGAACT+TGG + tig0019143:162807-162826 Msa1370860:intron 30.0%
AACTTCACATCAGAAAAACA+TGG - tig0019143:163087-163106 None:intergenic 30.0%
TATATAAGCAAGTGGTAACA+AGG - tig0019143:163382-163401 None:intergenic 30.0%
CAAAAATTAGACTCTATCGT+GGG - tig0019143:163408-163427 None:intergenic 30.0%
!! GTGTTGGTTTAAAATACAAG+AGG - tig0019143:163500-163519 None:intergenic 30.0%
! TTATGTGCTACTAAGATCAA+AGG + tig0019143:163525-163544 Msa1370860:three_prime_UTR 30.0%
AACTAGTTAAACACAATTGG+TGG + tig0019143:163609-163628 Msa1370860:three_prime_UTR 30.0%
! TTATGTGTTTTATACGTGCA+AGG + tig0019143:163661-163680 Msa1370860:three_prime_UTR 30.0%
AGTGAAACAAATAATCGAAC+AGG - tig0019143:159984-160003 None:intergenic 30.0%
GTTCGATTATTTGTTTCACT+TGG + tig0019143:159984-160003 Msa1370860:intron 30.0%
!! ATTGTTGTTTAGGATCAGTT+TGG + tig0019143:160095-160114 Msa1370860:intron 30.0%
TTATGAGTCCTTCTTAACTA+AGG + tig0019143:160131-160150 Msa1370860:intron 30.0%
TATGAGTCCTTCTTAACTAA+GGG + tig0019143:160132-160151 Msa1370860:intron 30.0%
! AACTAAGGGTGTGTTTAAAT+TGG + tig0019143:160146-160165 Msa1370860:intron 30.0%
GGTGTGTTTAAATTGGATTA+TGG + tig0019143:160153-160172 Msa1370860:intron 30.0%
GAAACAGTTTATGACATGTT+CGG + tig0019143:160175-160194 Msa1370860:intron 30.0%
CTTGGAGAGCTTATAAAAAT+AGG - tig0019143:160213-160232 None:intergenic 30.0%
!!! GATGGTTTTATAAGCTATCT+TGG - tig0019143:160231-160250 None:intergenic 30.0%
! GATTTGAGTTAAGGGATTAA+AGG + tig0019143:160390-160409 Msa1370860:intron 30.0%
AAAGGAATTGATGAGTCAAA+TGG + tig0019143:160408-160427 Msa1370860:intron 30.0%
! AACTAATTTTAGGCTCTGTT+TGG - tig0019143:160557-160576 None:intergenic 30.0%
TCAGCAGGTAATTATAGAAA+GGG - tig0019143:160789-160808 None:intergenic 30.0%
TGAGAAGTTTATGCAAACAT+GGG + tig0019143:160806-160825 Msa1370860:intron 30.0%
AATTGAGATGTACACATATG+TGG - tig0019143:160920-160939 None:intergenic 30.0%
! TTGATTACACCATTTCTAGA+TGG - tig0019143:161004-161023 None:intergenic 30.0%
CTCTTAGTTGTAAGTCAAAA+AGG + tig0019143:161485-161504 Msa1370860:intron 30.0%
!!! GAGAGTGTCTGAAAAATTTT+AGG + tig0019143:161546-161565 Msa1370860:intron 30.0%
AGAAAGATTCAGAACTAGTT+TGG - tig0019143:161666-161685 None:intergenic 30.0%
GAAGAAATTATTCGTAAGTC+AGG + tig0019143:161764-161783 Msa1370860:CDS 30.0%
TAAGTAATGATTCTAGTGCT+TGG + tig0019143:161859-161878 Msa1370860:intron 30.0%
AAGTAATGATTCTAGTGCTT+GGG + tig0019143:161860-161879 Msa1370860:intron 30.0%
! GTTTCTTTTTGTGGTAGTAT+TGG + tig0019143:161902-161921 Msa1370860:intron 30.0%
! TTTTGTCTCTTCATTCTCAA+AGG - tig0019143:162151-162170 None:intergenic 30.0%
ATGAAGAGACAAAACTGAAA+TGG + tig0019143:162157-162176 Msa1370860:intron 30.0%
TGAAGAGACAAAACTGAAAT+GGG + tig0019143:162158-162177 Msa1370860:intron 30.0%
!! TAGAAGTACTAAAACTCAAG+TGG + tig0019143:162233-162252 Msa1370860:intron 30.0%
TAACTCTCAAAATTGAACAC+TGG - tig0019143:162555-162574 None:intergenic 30.0%
ATTCTTACACTGATGAACAA+TGG - tig0019143:162670-162689 None:intergenic 30.0%
ACTATAGAGTGGAGTTTATT+TGG + tig0019143:162709-162728 Msa1370860:intron 30.0%
ATTCCTGATTTCATTGAACT+TGG + tig0019143:162807-162826 Msa1370860:intron 30.0%
AACTTCACATCAGAAAAACA+TGG - tig0019143:163087-163106 None:intergenic 30.0%
TATATAAGCAAGTGGTAACA+AGG - tig0019143:163382-163401 None:intergenic 30.0%
CAAAAATTAGACTCTATCGT+GGG - tig0019143:163408-163427 None:intergenic 30.0%
!! GTGTTGGTTTAAAATACAAG+AGG - tig0019143:163500-163519 None:intergenic 30.0%
! TTATGTGCTACTAAGATCAA+AGG + tig0019143:163525-163544 Msa1370860:three_prime_UTR 30.0%
AACTAGTTAAACACAATTGG+TGG + tig0019143:163609-163628 Msa1370860:three_prime_UTR 30.0%
! TTATGTGTTTTATACGTGCA+AGG + tig0019143:163661-163680 Msa1370860:three_prime_UTR 30.0%
GAAACAAATAATCGAACAGG+TGG - tig0019143:159981-160000 None:intergenic 35.0%
!! GGCAGTAAACATTGTTGTTT+AGG + tig0019143:160085-160104 Msa1370860:intron 35.0%
AGAAGGACTCATAAGCTAAA+AGG - tig0019143:160125-160144 None:intergenic 35.0%
AAACACACCCTTAGTTAAGA+AGG - tig0019143:160142-160161 None:intergenic 35.0%
TATCAATGATAAGCCCTTAC+TGG + tig0019143:160329-160348 Msa1370860:intron 35.0%
ATCAATGATAAGCCCTTACT+GGG + tig0019143:160330-160349 Msa1370860:intron 35.0%
!! AGCTCAACTGATTTGAGTTA+AGG + tig0019143:160381-160400 Msa1370860:intron 35.0%
!! GCTCAACTGATTTGAGTTAA+GGG + tig0019143:160382-160401 Msa1370860:intron 35.0%
ATTGATGAGTCAAATGGTCT+AGG + tig0019143:160414-160433 Msa1370860:intron 35.0%
TTGATGAGTCAAATGGTCTA+GGG + tig0019143:160415-160434 Msa1370860:intron 35.0%
CAGAGCCTAAAATTAGTTCA+TGG + tig0019143:160559-160578 Msa1370860:intron 35.0%
!!! CACAGTTTTTTTGAGGAACT+AGG + tig0019143:160730-160749 Msa1370860:intron 35.0%
!!! TTTTTTGAGGAACTAGGAAC+TGG + tig0019143:160736-160755 Msa1370860:intron 35.0%
CTCAGCAGGTAATTATAGAA+AGG - tig0019143:160790-160809 None:intergenic 35.0%
CTGAGAAGTTTATGCAAACA+TGG + tig0019143:160805-160824 Msa1370860:intron 35.0%
AAGTTTATGCAAACATGGGT+TGG + tig0019143:160810-160829 Msa1370860:intron 35.0%
TACCTTCATCCATCTAGAAA+TGG + tig0019143:160992-161011 Msa1370860:intron 35.0%
CTCTAGTAAACATCTTTGAG+AGG + tig0019143:161073-161092 Msa1370860:intron 35.0%
AACTTCTCAACAAGCACTTA+AGG - tig0019143:161453-161472 None:intergenic 35.0%
! TTTGACTTACAACTAAGAGC+TGG - tig0019143:161484-161503 None:intergenic 35.0%
TTCTTCTGATGGGATTTCAA+GGG - tig0019143:161750-161769 None:intergenic 35.0%
TTTCTTCTGATGGGATTTCA+AGG - tig0019143:161751-161770 None:intergenic 35.0%
GGATAAAGATAGAAGTGAAG+AGG + tig0019143:161785-161804 Msa1370860:exon 35.0%
! TCTCCTTAGGTTTCTTTTTG+TGG + tig0019143:161893-161912 Msa1370860:intron 35.0%
CTACCACAAAAAGAAACCTA+AGG - tig0019143:161899-161918 None:intergenic 35.0%
AACAAGCTTATCGTGCATAA+TGG + tig0019143:162071-162090 Msa1370860:intron 35.0%
!! CCTCATGTTTTTACGCATTA+GGG - tig0019143:162122-162141 None:intergenic 35.0%
!! TCCTCATGTTTTTACGCATT+AGG - tig0019143:162123-162142 None:intergenic 35.0%
AAAATTGAACACTGGTACAG+TGG - tig0019143:162547-162566 None:intergenic 35.0%
TGTGCTCTTAAACAAGAGTA+TGG - tig0019143:162755-162774 None:intergenic 35.0%
CAGGAATTATCCTAAACAAG+TGG - tig0019143:162794-162813 None:intergenic 35.0%
GATCCAAGTTCAATGAAATC+AGG - tig0019143:162813-162832 None:intergenic 35.0%
TCCTCATTAGATTGTAGGTT+GGG - tig0019143:162909-162928 None:intergenic 35.0%
TTCCTCATTAGATTGTAGGT+TGG - tig0019143:162910-162929 None:intergenic 35.0%
ATATGCAGTTTGTAGAGCTT+GGG - tig0019143:162958-162977 None:intergenic 35.0%
TATATGCAGTTTGTAGAGCT+TGG - tig0019143:162959-162978 None:intergenic 35.0%
TGAGTGAACACATCATCTTA+TGG - tig0019143:163144-163163 None:intergenic 35.0%
AGTGTGAAGTGTGAAACAAT+AGG + tig0019143:163202-163221 Msa1370860:intron 35.0%
TTCTGCATATCAACTACGTT+TGG - tig0019143:163275-163294 None:intergenic 35.0%
CCAAAAATTAGACTCTATCG+TGG - tig0019143:163409-163428 None:intergenic 35.0%
! CCACGATAGAGTCTAATTTT+TGG + tig0019143:163406-163425 Msa1370860:intron 35.0%
GTAGCACATAAAGTTTGTGT+TGG - tig0019143:163516-163535 None:intergenic 35.0%
CACATAAATTTCAGCTACCA+AGG - tig0019143:163648-163667 None:intergenic 35.0%
GCGGTCATTCAAATAATTGA+TGG + tig0019143:163696-163715 Msa1370860:three_prime_UTR 35.0%
GAAACAAATAATCGAACAGG+TGG - tig0019143:159981-160000 None:intergenic 35.0%
!! GGCAGTAAACATTGTTGTTT+AGG + tig0019143:160085-160104 Msa1370860:intron 35.0%
AGAAGGACTCATAAGCTAAA+AGG - tig0019143:160125-160144 None:intergenic 35.0%
AAACACACCCTTAGTTAAGA+AGG - tig0019143:160142-160161 None:intergenic 35.0%
TATCAATGATAAGCCCTTAC+TGG + tig0019143:160329-160348 Msa1370860:intron 35.0%
ATCAATGATAAGCCCTTACT+GGG + tig0019143:160330-160349 Msa1370860:intron 35.0%
!! AGCTCAACTGATTTGAGTTA+AGG + tig0019143:160381-160400 Msa1370860:intron 35.0%
!! GCTCAACTGATTTGAGTTAA+GGG + tig0019143:160382-160401 Msa1370860:intron 35.0%
ATTGATGAGTCAAATGGTCT+AGG + tig0019143:160414-160433 Msa1370860:intron 35.0%
TTGATGAGTCAAATGGTCTA+GGG + tig0019143:160415-160434 Msa1370860:intron 35.0%
CAGAGCCTAAAATTAGTTCA+TGG + tig0019143:160559-160578 Msa1370860:intron 35.0%
!!! CACAGTTTTTTTGAGGAACT+AGG + tig0019143:160730-160749 Msa1370860:intron 35.0%
!!! TTTTTTGAGGAACTAGGAAC+TGG + tig0019143:160736-160755 Msa1370860:intron 35.0%
CTCAGCAGGTAATTATAGAA+AGG - tig0019143:160790-160809 None:intergenic 35.0%
CTGAGAAGTTTATGCAAACA+TGG + tig0019143:160805-160824 Msa1370860:intron 35.0%
AAGTTTATGCAAACATGGGT+TGG + tig0019143:160810-160829 Msa1370860:intron 35.0%
TACCTTCATCCATCTAGAAA+TGG + tig0019143:160992-161011 Msa1370860:intron 35.0%
CTCTAGTAAACATCTTTGAG+AGG + tig0019143:161073-161092 Msa1370860:intron 35.0%
AACTTCTCAACAAGCACTTA+AGG - tig0019143:161453-161472 None:intergenic 35.0%
! TTTGACTTACAACTAAGAGC+TGG - tig0019143:161484-161503 None:intergenic 35.0%
TTCTTCTGATGGGATTTCAA+GGG - tig0019143:161750-161769 None:intergenic 35.0%
TTTCTTCTGATGGGATTTCA+AGG - tig0019143:161751-161770 None:intergenic 35.0%
GGATAAAGATAGAAGTGAAG+AGG + tig0019143:161785-161804 Msa1370860:exon 35.0%
! TCTCCTTAGGTTTCTTTTTG+TGG + tig0019143:161893-161912 Msa1370860:intron 35.0%
CTACCACAAAAAGAAACCTA+AGG - tig0019143:161899-161918 None:intergenic 35.0%
AACAAGCTTATCGTGCATAA+TGG + tig0019143:162071-162090 Msa1370860:intron 35.0%
!! CCTCATGTTTTTACGCATTA+GGG - tig0019143:162122-162141 None:intergenic 35.0%
!! TCCTCATGTTTTTACGCATT+AGG - tig0019143:162123-162142 None:intergenic 35.0%
AAAATTGAACACTGGTACAG+TGG - tig0019143:162547-162566 None:intergenic 35.0%
TGTGCTCTTAAACAAGAGTA+TGG - tig0019143:162755-162774 None:intergenic 35.0%
CAGGAATTATCCTAAACAAG+TGG - tig0019143:162794-162813 None:intergenic 35.0%
GATCCAAGTTCAATGAAATC+AGG - tig0019143:162813-162832 None:intergenic 35.0%
TCCTCATTAGATTGTAGGTT+GGG - tig0019143:162909-162928 None:intergenic 35.0%
TTCCTCATTAGATTGTAGGT+TGG - tig0019143:162910-162929 None:intergenic 35.0%
ATATGCAGTTTGTAGAGCTT+GGG - tig0019143:162958-162977 None:intergenic 35.0%
TATATGCAGTTTGTAGAGCT+TGG - tig0019143:162959-162978 None:intergenic 35.0%
TGAGTGAACACATCATCTTA+TGG - tig0019143:163144-163163 None:intergenic 35.0%
AGTGTGAAGTGTGAAACAAT+AGG + tig0019143:163202-163221 Msa1370860:intron 35.0%
TTCTGCATATCAACTACGTT+TGG - tig0019143:163275-163294 None:intergenic 35.0%
CCAAAAATTAGACTCTATCG+TGG - tig0019143:163409-163428 None:intergenic 35.0%
! CCACGATAGAGTCTAATTTT+TGG + tig0019143:163406-163425 Msa1370860:intron 35.0%
GTAGCACATAAAGTTTGTGT+TGG - tig0019143:163516-163535 None:intergenic 35.0%
CACATAAATTTCAGCTACCA+AGG - tig0019143:163648-163667 None:intergenic 35.0%
GCGGTCATTCAAATAATTGA+TGG + tig0019143:163696-163715 Msa1370860:three_prime_UTR 35.0%
TGAAGGAAACGAAAGGAGTA+GGG + tig0019143:159678-159697 Msa1370860:five_prime_UTR 40.0%
GCCACTAAGAAATCATTCGT+CGG + tig0019143:159753-159772 Msa1370860:CDS 40.0%
GTAAGCAGTTTGAAGAAAGC+AGG + tig0019143:159814-159833 Msa1370860:CDS 40.0%
AATAATGATGCCGGCAGTTA+TGG + tig0019143:159930-159949 Msa1370860:CDS 40.0%
! AGATAGAGTACCATAACTGC+CGG - tig0019143:159943-159962 None:intergenic 40.0%
! TTAGTATTTTGCTCCGTGTC+AGG - tig0019143:160448-160467 None:intergenic 40.0%
!!! TGGGTCTCACAGTTTTTTTG+AGG + tig0019143:160723-160742 Msa1370860:intron 40.0%
GTTTGCATAAACTTCTCAGC+AGG - tig0019143:160804-160823 None:intergenic 40.0%
TATGGACATCTGACATGACA+CGG + tig0019143:160858-160877 Msa1370860:intron 40.0%
! CACCATTTCTAGATGGATGA+AGG - tig0019143:160997-161016 None:intergenic 40.0%
! GAGTATCCATAGAGTGTCTA+AGG + tig0019143:161104-161123 Msa1370860:intron 40.0%
GGGACTTCAAATTTCTCCTT+AGG + tig0019143:161880-161899 Msa1370860:intron 40.0%
TCGAAACAAAGCTACCAGAA+AGG - tig0019143:161969-161988 None:intergenic 40.0%
TTGTGTGTCTCTAAGTGTGT+GGG - tig0019143:162031-162050 None:intergenic 40.0%
CCCTAATGCGTAAAAACATG+AGG + tig0019143:162119-162138 Msa1370860:intron 40.0%
TCAAGTGGATGCAAACTGTT+GGG + tig0019143:162248-162267 Msa1370860:intron 40.0%
GGTATAGGGGAAATAGAGTA+TGG + tig0019143:162642-162661 Msa1370860:intron 40.0%
TGCATCACGAAACTATAGAG+TGG + tig0019143:162698-162717 Msa1370860:intron 40.0%
TGGAGACATGTCAATGTAGT+TGG + tig0019143:162729-162748 Msa1370860:intron 40.0%
! AAGAGCACACTTCTTTAGCT+AGG + tig0019143:162766-162785 Msa1370860:intron 40.0%
TAGCTAGGTTCCACTTGTTT+AGG + tig0019143:162781-162800 Msa1370860:intron 40.0%
TGGGGTTTCACAACAAAACT+AGG - tig0019143:162890-162909 None:intergenic 40.0%
CCTCATTAGATTGTAGGTTG+GGG - tig0019143:162908-162927 None:intergenic 40.0%
GCAGTTCCTCATTAGATTGT+AGG - tig0019143:162914-162933 None:intergenic 40.0%
ACAAGCACCAAATGGTTAGT+CGG - tig0019143:162994-163013 None:intergenic 40.0%
CCTTGTAAACAAGCACCAAA+TGG - tig0019143:163002-163021 None:intergenic 40.0%
!! CCATTTGGTGCTTGTTTACA+AGG + tig0019143:162999-163018 Msa1370860:intron 40.0%
CAGCAATTTCAATCTGGCTA+GGG - tig0019143:163235-163254 None:intergenic 40.0%
ACAGCAATTTCAATCTGGCT+AGG - tig0019143:163236-163255 None:intergenic 40.0%
TCCTGACAGCAATTTCAATC+TGG - tig0019143:163241-163260 None:intergenic 40.0%
CAGAATACGACGTAGTTAGA+AGG + tig0019143:163290-163309 Msa1370860:intron 40.0%
GTGGGTCATATATAAGCAAG+TGG - tig0019143:163390-163409 None:intergenic 40.0%
AATTTCAGCTACCAAGGTGA+TGG - tig0019143:163642-163661 None:intergenic 40.0%
TGAAGGAAACGAAAGGAGTA+GGG + tig0019143:159678-159697 Msa1370860:five_prime_UTR 40.0%
GCCACTAAGAAATCATTCGT+CGG + tig0019143:159753-159772 Msa1370860:CDS 40.0%
GTAAGCAGTTTGAAGAAAGC+AGG + tig0019143:159814-159833 Msa1370860:CDS 40.0%
AATAATGATGCCGGCAGTTA+TGG + tig0019143:159930-159949 Msa1370860:CDS 40.0%
! AGATAGAGTACCATAACTGC+CGG - tig0019143:159943-159962 None:intergenic 40.0%
! TTAGTATTTTGCTCCGTGTC+AGG - tig0019143:160448-160467 None:intergenic 40.0%
!!! TGGGTCTCACAGTTTTTTTG+AGG + tig0019143:160723-160742 Msa1370860:intron 40.0%
GTTTGCATAAACTTCTCAGC+AGG - tig0019143:160804-160823 None:intergenic 40.0%
TATGGACATCTGACATGACA+CGG + tig0019143:160858-160877 Msa1370860:intron 40.0%
! CACCATTTCTAGATGGATGA+AGG - tig0019143:160997-161016 None:intergenic 40.0%
! GAGTATCCATAGAGTGTCTA+AGG + tig0019143:161104-161123 Msa1370860:intron 40.0%
GGGACTTCAAATTTCTCCTT+AGG + tig0019143:161880-161899 Msa1370860:intron 40.0%
TCGAAACAAAGCTACCAGAA+AGG - tig0019143:161969-161988 None:intergenic 40.0%
TTGTGTGTCTCTAAGTGTGT+GGG - tig0019143:162031-162050 None:intergenic 40.0%
CCCTAATGCGTAAAAACATG+AGG + tig0019143:162119-162138 Msa1370860:intron 40.0%
TCAAGTGGATGCAAACTGTT+GGG + tig0019143:162248-162267 Msa1370860:intron 40.0%
GGTATAGGGGAAATAGAGTA+TGG + tig0019143:162642-162661 Msa1370860:intron 40.0%
TGCATCACGAAACTATAGAG+TGG + tig0019143:162698-162717 Msa1370860:intron 40.0%
TGGAGACATGTCAATGTAGT+TGG + tig0019143:162729-162748 Msa1370860:intron 40.0%
! AAGAGCACACTTCTTTAGCT+AGG + tig0019143:162766-162785 Msa1370860:intron 40.0%
TAGCTAGGTTCCACTTGTTT+AGG + tig0019143:162781-162800 Msa1370860:intron 40.0%
TGGGGTTTCACAACAAAACT+AGG - tig0019143:162890-162909 None:intergenic 40.0%
CCTCATTAGATTGTAGGTTG+GGG - tig0019143:162908-162927 None:intergenic 40.0%
GCAGTTCCTCATTAGATTGT+AGG - tig0019143:162914-162933 None:intergenic 40.0%
ACAAGCACCAAATGGTTAGT+CGG - tig0019143:162994-163013 None:intergenic 40.0%
CCTTGTAAACAAGCACCAAA+TGG - tig0019143:163002-163021 None:intergenic 40.0%
!! CCATTTGGTGCTTGTTTACA+AGG + tig0019143:162999-163018 Msa1370860:intron 40.0%
CAGCAATTTCAATCTGGCTA+GGG - tig0019143:163235-163254 None:intergenic 40.0%
ACAGCAATTTCAATCTGGCT+AGG - tig0019143:163236-163255 None:intergenic 40.0%
TCCTGACAGCAATTTCAATC+TGG - tig0019143:163241-163260 None:intergenic 40.0%
CAGAATACGACGTAGTTAGA+AGG + tig0019143:163290-163309 Msa1370860:intron 40.0%
GTGGGTCATATATAAGCAAG+TGG - tig0019143:163390-163409 None:intergenic 40.0%
AATTTCAGCTACCAAGGTGA+TGG - tig0019143:163642-163661 None:intergenic 40.0%
TTAGGCTACTACCAGTCTGA+AGG + tig0019143:159661-159680 Msa1370860:five_prime_UTR 45.0%
ACCAGTCTGAAGGAAACGAA+AGG + tig0019143:159671-159690 Msa1370860:five_prime_UTR 45.0%
TCCTTTCGTTTCCTTCAGAC+TGG - tig0019143:159675-159694 None:intergenic 45.0%
CTGAAGGAAACGAAAGGAGT+AGG + tig0019143:159677-159696 Msa1370860:five_prime_UTR 45.0%
GCCGACGAATGATTTCTTAG+TGG - tig0019143:159757-159776 None:intergenic 45.0%
GGCGATCATCATATGCTGAA+GGG + tig0019143:159774-159793 Msa1370860:CDS 45.0%
TCATATGCTGAAGGGATCTG+CGG + tig0019143:159782-159801 Msa1370860:CDS 45.0%
GCACCACTCAATAATGATGC+CGG + tig0019143:159921-159940 Msa1370860:CDS 45.0%
ATGATAAGCCCTTACTGGGA+TGG + tig0019143:160334-160353 Msa1370860:intron 45.0%
TGATAAGCCCTTACTGGGAT+GGG + tig0019143:160335-160354 Msa1370860:intron 45.0%
! ACATCTTTGAGAGGTGACCA+AGG + tig0019143:161082-161101 Msa1370860:intron 45.0%
GACACTCTATGGATACTCCT+TGG - tig0019143:161102-161121 None:intergenic 45.0%
AGCACACCTTAGACACTCTA+TGG - tig0019143:161113-161132 None:intergenic 45.0%
TTTGTTGCAGTAGTGAAGCC+TGG + tig0019143:161704-161723 Msa1370860:intron 45.0%
TGTGTGTCTCTAAGTGTGTG+GGG - tig0019143:162030-162049 None:intergenic 45.0%
CTTGTGTGTCTCTAAGTGTG+TGG - tig0019143:162032-162051 None:intergenic 45.0%
CTCAAGTGGATGCAAACTGT+TGG + tig0019143:162247-162266 Msa1370860:intron 45.0%
!! TTTGCTTGAGCTTTGAGGTG+CGG + tig0019143:162324-162343 Msa1370860:intron 45.0%
AACAATGTATCGGGGAGTCA+GGG - tig0019143:162379-162398 None:intergenic 45.0%
AAACAATGTATCGGGGAGTC+AGG - tig0019143:162380-162399 None:intergenic 45.0%
CCCCAACCTACAATCTAATG+AGG + tig0019143:162905-162924 Msa1370860:intron 45.0%
AGCTTGGGCTTGTGATTGTT+TGG - tig0019143:162943-162962 None:intergenic 45.0%
! CAAATGGTTAGTCGGTAGTC+AGG - tig0019143:162986-163005 None:intergenic 45.0%
! CTGACTACCGACTAACCATT+TGG + tig0019143:162984-163003 Msa1370860:intron 45.0%
GCCAGATTGAAATTGCTGTC+AGG + tig0019143:163237-163256 Msa1370860:intron 45.0%
! GTGCTACTAAGATCAAAGGC+TGG + tig0019143:163529-163548 Msa1370860:three_prime_UTR 45.0%
CTAAGATCAAAGGCTGGACT+CGG + tig0019143:163535-163554 Msa1370860:three_prime_UTR 45.0%
TAAGATCAAAGGCTGGACTC+GGG + tig0019143:163536-163555 Msa1370860:three_prime_UTR 45.0%
! TGCAAGGACTAGCAAGATTG+CGG + tig0019143:163677-163696 Msa1370860:three_prime_UTR 45.0%
TTAGGCTACTACCAGTCTGA+AGG + tig0019143:159661-159680 Msa1370860:five_prime_UTR 45.0%
ACCAGTCTGAAGGAAACGAA+AGG + tig0019143:159671-159690 Msa1370860:five_prime_UTR 45.0%
TCCTTTCGTTTCCTTCAGAC+TGG - tig0019143:159675-159694 None:intergenic 45.0%
CTGAAGGAAACGAAAGGAGT+AGG + tig0019143:159677-159696 Msa1370860:five_prime_UTR 45.0%
GCCGACGAATGATTTCTTAG+TGG - tig0019143:159757-159776 None:intergenic 45.0%
GGCGATCATCATATGCTGAA+GGG + tig0019143:159774-159793 Msa1370860:CDS 45.0%
TCATATGCTGAAGGGATCTG+CGG + tig0019143:159782-159801 Msa1370860:CDS 45.0%
GCACCACTCAATAATGATGC+CGG + tig0019143:159921-159940 Msa1370860:CDS 45.0%
ATGATAAGCCCTTACTGGGA+TGG + tig0019143:160334-160353 Msa1370860:intron 45.0%
TGATAAGCCCTTACTGGGAT+GGG + tig0019143:160335-160354 Msa1370860:intron 45.0%
! ACATCTTTGAGAGGTGACCA+AGG + tig0019143:161082-161101 Msa1370860:intron 45.0%
GACACTCTATGGATACTCCT+TGG - tig0019143:161102-161121 None:intergenic 45.0%
AGCACACCTTAGACACTCTA+TGG - tig0019143:161113-161132 None:intergenic 45.0%
TTTGTTGCAGTAGTGAAGCC+TGG + tig0019143:161704-161723 Msa1370860:intron 45.0%
TGTGTGTCTCTAAGTGTGTG+GGG - tig0019143:162030-162049 None:intergenic 45.0%
CTTGTGTGTCTCTAAGTGTG+TGG - tig0019143:162032-162051 None:intergenic 45.0%
CTCAAGTGGATGCAAACTGT+TGG + tig0019143:162247-162266 Msa1370860:intron 45.0%
!! TTTGCTTGAGCTTTGAGGTG+CGG + tig0019143:162324-162343 Msa1370860:intron 45.0%
AACAATGTATCGGGGAGTCA+GGG - tig0019143:162379-162398 None:intergenic 45.0%
AAACAATGTATCGGGGAGTC+AGG - tig0019143:162380-162399 None:intergenic 45.0%
CCCCAACCTACAATCTAATG+AGG + tig0019143:162905-162924 Msa1370860:intron 45.0%
AGCTTGGGCTTGTGATTGTT+TGG - tig0019143:162943-162962 None:intergenic 45.0%
! CAAATGGTTAGTCGGTAGTC+AGG - tig0019143:162986-163005 None:intergenic 45.0%
! CTGACTACCGACTAACCATT+TGG + tig0019143:162984-163003 Msa1370860:intron 45.0%
GCCAGATTGAAATTGCTGTC+AGG + tig0019143:163237-163256 Msa1370860:intron 45.0%
! GTGCTACTAAGATCAAAGGC+TGG + tig0019143:163529-163548 Msa1370860:three_prime_UTR 45.0%
CTAAGATCAAAGGCTGGACT+CGG + tig0019143:163535-163554 Msa1370860:three_prime_UTR 45.0%
TAAGATCAAAGGCTGGACTC+GGG + tig0019143:163536-163555 Msa1370860:three_prime_UTR 45.0%
! TGCAAGGACTAGCAAGATTG+CGG + tig0019143:163677-163696 Msa1370860:three_prime_UTR 45.0%
TAGGGCAGAGAGATGACGAA+AGG + tig0019143:159696-159715 Msa1370860:exon 50.0%
AGGGCAGAGAGATGACGAAA+GGG + tig0019143:159697-159716 Msa1370860:exon 50.0%
CGGCGATCATCATATGCTGA+AGG + tig0019143:159773-159792 Msa1370860:CDS 50.0%
AAGCTTCTGGATCTCCGCTT+CGG - tig0019143:159850-159869 None:intergenic 50.0%
GATCCAGAAGCTTCTTGCAC+AGG + tig0019143:159857-159876 Msa1370860:CDS 50.0%
CATGGTAGAGACGAACTCAG+CGG - tig0019143:159892-159911 None:intergenic 50.0%
CTGCCGGCATCATTATTGAG+TGG - tig0019143:159927-159946 None:intergenic 50.0%
GATAAGCCCTTACTGGGATG+GGG + tig0019143:160336-160355 Msa1370860:intron 50.0%
ATAAGCCCTTACTGGGATGG+GGG + tig0019143:160337-160356 Msa1370860:intron 50.0%
CTAGGGTTCAAGTCCTGACA+CGG + tig0019143:160432-160451 Msa1370860:intron 50.0%
GAGGAACTAGGAACTGGAAG+TGG + tig0019143:160742-160761 Msa1370860:intron 50.0%
GAGGACACACCTAATCTCAG+AGG + tig0019143:161231-161250 Msa1370860:intron 50.0%
!! GCACAGAAGCCTCTGAGATT+AGG - tig0019143:161243-161262 None:intergenic 50.0%
! AAGCCTGGAAAAGAGCATGC+TGG + tig0019143:161719-161738 Msa1370860:CDS 50.0%
CGTGATGTACTGCACCTTTC+TGG + tig0019143:161952-161971 Msa1370860:intron 50.0%
TCTACACTTCCTCTCCTCCA+GGG + tig0019143:162301-162320 Msa1370860:intron 50.0%
AAAGCTCAAGCAAACCCTGG+AGG - tig0019143:162318-162337 None:intergenic 50.0%
CTCAAAGCTCAAGCAAACCC+TGG - tig0019143:162321-162340 None:intergenic 50.0%
! CAGGGTTTGCTTGAGCTTTG+AGG + tig0019143:162319-162338 Msa1370860:intron 50.0%
TCAGCGACACATATGCACCA+TGG - tig0019143:162495-162514 None:intergenic 50.0%
TAGGGCAGAGAGATGACGAA+AGG + tig0019143:159696-159715 Msa1370860:exon 50.0%
AGGGCAGAGAGATGACGAAA+GGG + tig0019143:159697-159716 Msa1370860:exon 50.0%
CGGCGATCATCATATGCTGA+AGG + tig0019143:159773-159792 Msa1370860:CDS 50.0%
AAGCTTCTGGATCTCCGCTT+CGG - tig0019143:159850-159869 None:intergenic 50.0%
GATCCAGAAGCTTCTTGCAC+AGG + tig0019143:159857-159876 Msa1370860:CDS 50.0%
CATGGTAGAGACGAACTCAG+CGG - tig0019143:159892-159911 None:intergenic 50.0%
CTGCCGGCATCATTATTGAG+TGG - tig0019143:159927-159946 None:intergenic 50.0%
GATAAGCCCTTACTGGGATG+GGG + tig0019143:160336-160355 Msa1370860:intron 50.0%
ATAAGCCCTTACTGGGATGG+GGG + tig0019143:160337-160356 Msa1370860:intron 50.0%
CTAGGGTTCAAGTCCTGACA+CGG + tig0019143:160432-160451 Msa1370860:intron 50.0%
GAGGAACTAGGAACTGGAAG+TGG + tig0019143:160742-160761 Msa1370860:intron 50.0%
GAGGACACACCTAATCTCAG+AGG + tig0019143:161231-161250 Msa1370860:intron 50.0%
!! GCACAGAAGCCTCTGAGATT+AGG - tig0019143:161243-161262 None:intergenic 50.0%
! AAGCCTGGAAAAGAGCATGC+TGG + tig0019143:161719-161738 Msa1370860:CDS 50.0%
CGTGATGTACTGCACCTTTC+TGG + tig0019143:161952-161971 Msa1370860:intron 50.0%
TCTACACTTCCTCTCCTCCA+GGG + tig0019143:162301-162320 Msa1370860:intron 50.0%
AAAGCTCAAGCAAACCCTGG+AGG - tig0019143:162318-162337 None:intergenic 50.0%
CTCAAAGCTCAAGCAAACCC+TGG - tig0019143:162321-162340 None:intergenic 50.0%
! CAGGGTTTGCTTGAGCTTTG+AGG + tig0019143:162319-162338 Msa1370860:intron 50.0%
TCAGCGACACATATGCACCA+TGG - tig0019143:162495-162514 None:intergenic 50.0%
!! GCAAGTTCTGAGCGCGTACA+GGG + tig0019143:159719-159738 Msa1370860:CDS 55.0%
CAGGAATGTCACCTCCGAAG+CGG + tig0019143:159833-159852 Msa1370860:CDS 55.0%
TGGCCTGTGCAAGAAGCTTC+TGG - tig0019143:159863-159882 None:intergenic 55.0%
GCTTCTTGCACAGGCCAATG+AGG + tig0019143:159866-159885 Msa1370860:CDS 55.0%
CGTCTCTACCATGCTCGTTC+AGG + tig0019143:159899-159918 Msa1370860:CDS 55.0%
CTGACATGACACGGACGTGT+CGG + tig0019143:160867-160886 Msa1370860:intron 55.0%
GCGTCGTACGAGTTTCGTAC+AGG + tig0019143:161181-161200 Msa1370860:intron 55.0%
! GCACCAGCATGCTCTTTTCC+AGG - tig0019143:161725-161744 None:intergenic 55.0%
GTCTACACTTCCTCTCCTCC+AGG + tig0019143:162300-162319 Msa1370860:intron 55.0%
TCAAGCAAACCCTGGAGGAG+AGG - tig0019143:162313-162332 None:intergenic 55.0%
AATGTATCGGGGAGTCAGGG+TGG - tig0019143:162376-162395 None:intergenic 55.0%
TGTCGCTGACAGCTGAGTTC+AGG + tig0019143:162506-162525 Msa1370860:intron 55.0%
GTGGCAATGTGCCATCACCT+TGG + tig0019143:163628-163647 Msa1370860:three_prime_UTR 55.0%
!! GCAAGTTCTGAGCGCGTACA+GGG + tig0019143:159719-159738 Msa1370860:CDS 55.0%
CAGGAATGTCACCTCCGAAG+CGG + tig0019143:159833-159852 Msa1370860:CDS 55.0%
TGGCCTGTGCAAGAAGCTTC+TGG - tig0019143:159863-159882 None:intergenic 55.0%
GCTTCTTGCACAGGCCAATG+AGG + tig0019143:159866-159885 Msa1370860:CDS 55.0%
CGTCTCTACCATGCTCGTTC+AGG + tig0019143:159899-159918 Msa1370860:CDS 55.0%
CTGACATGACACGGACGTGT+CGG + tig0019143:160867-160886 Msa1370860:intron 55.0%
GCGTCGTACGAGTTTCGTAC+AGG + tig0019143:161181-161200 Msa1370860:intron 55.0%
! GCACCAGCATGCTCTTTTCC+AGG - tig0019143:161725-161744 None:intergenic 55.0%
GTCTACACTTCCTCTCCTCC+AGG + tig0019143:162300-162319 Msa1370860:intron 55.0%
TCAAGCAAACCCTGGAGGAG+AGG - tig0019143:162313-162332 None:intergenic 55.0%
AATGTATCGGGGAGTCAGGG+TGG - tig0019143:162376-162395 None:intergenic 55.0%
TGTCGCTGACAGCTGAGTTC+AGG + tig0019143:162506-162525 Msa1370860:intron 55.0%
GTGGCAATGTGCCATCACCT+TGG + tig0019143:163628-163647 Msa1370860:three_prime_UTR 55.0%
!! GGCAAGTTCTGAGCGCGTAC+AGG + tig0019143:159718-159737 Msa1370860:CDS 60.0%
!! AGTTCTGAGCGCGTACAGGG+CGG + tig0019143:159722-159741 Msa1370860:CDS 60.0%
CTTCTGGATCTCCGCTTCGG+AGG - tig0019143:159847-159866 None:intergenic 60.0%
GACGAACTCAGCGGCCTCAT+TGG - tig0019143:159883-159902 None:intergenic 60.0%
GAGTGGTGCCTGAACGAGCA+TGG - tig0019143:159910-159929 None:intergenic 60.0%
AGTGACGCGTGTCGAACACG+AGG + tig0019143:161212-161231 Msa1370860:intron 60.0%
!! GGCAAGTTCTGAGCGCGTAC+AGG + tig0019143:159718-159737 Msa1370860:CDS 60.0%
!! AGTTCTGAGCGCGTACAGGG+CGG + tig0019143:159722-159741 Msa1370860:CDS 60.0%
CTTCTGGATCTCCGCTTCGG+AGG - tig0019143:159847-159866 None:intergenic 60.0%
GACGAACTCAGCGGCCTCAT+TGG - tig0019143:159883-159902 None:intergenic 60.0%
GAGTGGTGCCTGAACGAGCA+TGG - tig0019143:159910-159929 None:intergenic 60.0%
AGTGACGCGTGTCGAACACG+AGG + tig0019143:161212-161231 Msa1370860:intron 60.0%
GCTGAAGGGATCTGCGGCTG+AGG + tig0019143:159788-159807 Msa1370860:CDS 65.0%
AGCCCTTACTGGGATGGGGG+TGG + tig0019143:160340-160359 Msa1370860:intron 65.0%
GCCCTTACTGGGATGGGGGT+GGG + tig0019143:160341-160360 Msa1370860:intron 65.0%
CCCCACCCCCATCCCAGTAA+GGG - tig0019143:160345-160364 None:intergenic 65.0%
CCCTTACTGGGATGGGGGTG+GGG + tig0019143:160342-160361 Msa1370860:intron 65.0%
CCTTACTGGGATGGGGGTGG+GGG + tig0019143:160343-160362 Msa1370860:intron 65.0%
GATGGGGGTGGGGGTGGTTA+GGG + tig0019143:160352-160371 Msa1370860:intron 65.0%
GGGTGGGGGTGGTTAGGGTT+GGG + tig0019143:160357-160376 Msa1370860:intron 65.0%
GCTGAAGGGATCTGCGGCTG+AGG + tig0019143:159788-159807 Msa1370860:CDS 65.0%
AGCCCTTACTGGGATGGGGG+TGG + tig0019143:160340-160359 Msa1370860:intron 65.0%
GCCCTTACTGGGATGGGGGT+GGG + tig0019143:160341-160360 Msa1370860:intron 65.0%
CCCCACCCCCATCCCAGTAA+GGG - tig0019143:160345-160364 None:intergenic 65.0%
CCCTTACTGGGATGGGGGTG+GGG + tig0019143:160342-160361 Msa1370860:intron 65.0%
CCTTACTGGGATGGGGGTGG+GGG + tig0019143:160343-160362 Msa1370860:intron 65.0%
GATGGGGGTGGGGGTGGTTA+GGG + tig0019143:160352-160371 Msa1370860:intron 65.0%
GGGTGGGGGTGGTTAGGGTT+GGG + tig0019143:160357-160376 Msa1370860:intron 65.0%
CCCCCACCCCCATCCCAGTA+AGG - tig0019143:160346-160365 None:intergenic 70.0%
TACTGGGATGGGGGTGGGGG+TGG + tig0019143:160346-160365 Msa1370860:intron 70.0%
GGATGGGGGTGGGGGTGGTT+AGG + tig0019143:160351-160370 Msa1370860:intron 70.0%
GGGGTGGGGGTGGTTAGGGT+TGG + tig0019143:160356-160375 Msa1370860:intron 70.0%
CCCCCACCCCCATCCCAGTA+AGG - tig0019143:160346-160365 None:intergenic 70.0%
TACTGGGATGGGGGTGGGGG+TGG + tig0019143:160346-160365 Msa1370860:intron 70.0%
GGATGGGGGTGGGGGTGGTT+AGG + tig0019143:160351-160370 Msa1370860:intron 70.0%
GGGGTGGGGGTGGTTAGGGT+TGG + tig0019143:160356-160375 Msa1370860:intron 70.0%
Chromosome Type Strat End Strand Name
tig0019143 gene 159652 163738 159652 ID=Msa1370860;Name=Msa1370860
tig0019143 mRNA 159652 163738 159652 ID=Msa1370860-mRNA-1;Parent=Msa1370860;Name=Msa1370860-mRNA-1;_AED=0.13;_eAED=0.13;_QI=56|1|1|1|0.5|0.66|3|281|106
tig0019143 exon 159652 159951 159652 ID=Msa1370860-mRNA-1:exon:1829;Parent=Msa1370860-mRNA-1
tig0019143 exon 161714 161806 161714 ID=Msa1370860-mRNA-1:exon:1830;Parent=Msa1370860-mRNA-1
tig0019143 exon 163474 163738 163474 ID=Msa1370860-mRNA-1:exon:1831;Parent=Msa1370860-mRNA-1
tig0019143 five_prime_UTR 159652 159707 159652 ID=Msa1370860-mRNA-1:five_prime_utr;Parent=Msa1370860-mRNA-1
tig0019143 CDS 159708 159951 159708 ID=Msa1370860-mRNA-1:cds;Parent=Msa1370860-mRNA-1
tig0019143 CDS 161714 161790 161714 ID=Msa1370860-mRNA-1:cds;Parent=Msa1370860-mRNA-1
tig0019143 three_prime_UTR 161791 161806 161791 ID=Msa1370860-mRNA-1:three_prime_utr;Parent=Msa1370860-mRNA-1
tig0019143 three_prime_UTR 163474 163738 163474 ID=Msa1370860-mRNA-1:three_prime_utr;Parent=Msa1370860-mRNA-1
Gene Sequence

>Msa1370860

ATGACGAAAGGGCAAGTTCTGAGCGCGTACAGGGCGGTGTTGAAAGCCACTAAGAAATCATTCGTCGGCGATCATCATATGCTGAAGGGATCTGCGGCTGAGGTGCGTAAGCAGTTTGAAGAAAGCAGGAATGTCACCTCCGAAGCGGAGATCCAGAAGCTTCTTGCACAGGCCAATGAGGCCGCTGAGTTCGTCTCTACCATGCTCGTTCAGGCACCACTCAATAATGATGCCGGCAGTTATGTAGTGAAGCCTGGAAAAGAGCATGCTGGTGCAACCCTTGAAATCCCATCAGAAGAAATTATTCGTAAGTCAGGATAA

Protein sequence

>Msa1370860

MTKGQVLSAYRAVLKATKKSFVGDHHMLKGSAAEVRKQFEESRNVTSEAEIQKLLAQANEAAEFVSTMLVQAPLNNDAGSYVVKPGKEHAGATLEIPSEEIIRKSG*