AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0174770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174770 MtrunA17_Chr1g0195571 98.113 106 2 0 1 106 1 106 5.72e-73 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174770 AT3G62810.1 59.615 104 41 1 1 104 1 103 6.21e-40 128
Msa0174770 AT3G62810.2 59.615 104 41 1 1 104 1 103 6.21e-40 128

Find 54 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTAACTAGTTAGTCAAAA+TGG 0.286419 1_4:+60549089 None:intergenic
TGGCCTGTGCAAGAAGCTTC+TGG 0.299331 1_4:+60552827 None:intergenic
GCGGTCATTCAAATAATTGA+TGG 0.371013 1_4:-60548993 Msa0174770:three_prime_UTR
ACTAACTAGTTAAACACAAT+TGG 0.387084 1_4:-60549081 Msa0174770:three_prime_UTR
CGTCTCTACCATGCTCGTTC+AGG 0.394653 1_4:-60552788 Msa0174770:CDS
AATAATGATGCCGGCAGTTA+TGG 0.401922 1_4:-60552757 Msa0174770:intron
GAAGAAATTATTCGTAAGTC+AGG 0.412402 1_4:-60550923 Msa0174770:CDS
GACGAACTCAGCGGCCTCAT+TGG 0.423868 1_4:+60552807 None:intergenic
CTAAGATCAAAGGCTGGACT+CGG 0.426422 1_4:-60549152 Msa0174770:three_prime_UTR
GCCGACGAATGATTTCTTAG+TGG 0.431991 1_4:+60552933 None:intergenic
GGCAAGTTCTGAGCGCGTAC+AGG 0.438135 1_4:-60552969 Msa0174770:CDS
TTTCTTCTGATGGGATTTCA+AGG 0.447514 1_4:+60550939 None:intergenic
ACGTCGTGTCTTACTGCATT+AGG 0.463402 1_4:-60553044 None:intergenic
TACGAATAATTTCTTCTGAT+GGG 0.470935 1_4:+60550930 None:intergenic
TTACGAATAATTTCTTCTGA+TGG 0.472202 1_4:+60550929 None:intergenic
TCCTTTCGTTTCCTTCAGAC+TGG 0.480601 1_4:+60553015 None:intergenic
AAGCTTCTGGATCTCCGCTT+CGG 0.492235 1_4:+60552840 None:intergenic
TTTGTTGCAGTAGTGAAGCC+TGG 0.498315 1_4:-60550983 Msa0174770:intron
AACTAGTTAAACACAATTGG+TGG 0.520423 1_4:-60549078 Msa0174770:three_prime_UTR
TTCTTCTGATGGGATTTCAA+GGG 0.527691 1_4:+60550940 None:intergenic
GATCCAGAAGCTTCTTGCAC+AGG 0.529541 1_4:-60552830 Msa0174770:CDS
GTAGCACATAAAGTTTGTGT+TGG 0.537752 1_4:+60549174 None:intergenic
CTGAAGGAAACGAAAGGAGT+AGG 0.542066 1_4:-60553010 Msa0174770:five_prime_UTR
AGGGCAGAGAGATGACGAAA+GGG 0.544928 1_4:-60552990 Msa0174770:exon
GCTGAAGGGATCTGCGGCTG+AGG 0.549347 1_4:-60552899 Msa0174770:CDS
TGAAGGAAACGAAAGGAGTA+GGG 0.555103 1_4:-60553009 Msa0174770:five_prime_UTR
GGATAAAGATAGAAGTGAAG+AGG 0.557219 1_4:-60550902 Msa0174770:intron
TAGGGCAGAGAGATGACGAA+AGG 0.559316 1_4:-60552991 Msa0174770:exon
CGGCGATCATCATATGCTGA+AGG 0.569382 1_4:-60552914 Msa0174770:CDS
GCAAGTTCTGAGCGCGTACA+GGG 0.570115 1_4:-60552968 Msa0174770:CDS
GTAAGCAGTTTGAAGAAAGC+AGG 0.570580 1_4:-60552873 Msa0174770:CDS
CACATAAATTTCAGCTACCA+AGG 0.572185 1_4:+60549042 None:intergenic
CTTCTGGATCTCCGCTTCGG+AGG 0.573783 1_4:+60552843 None:intergenic
TTATGTGCTACTAAGATCAA+AGG 0.581880 1_4:-60549162 Msa0174770:three_prime_UTR
GCACCACTCAATAATGATGC+CGG 0.582849 1_4:-60552766 Msa0174770:CDS
AGATAGAGTACCATAACTGC+CGG 0.589190 1_4:+60552747 None:intergenic
GTGCTACTAAGATCAAAGGC+TGG 0.601166 1_4:-60549158 Msa0174770:three_prime_UTR
AATTTCAGCTACCAAGGTGA+TGG 0.603196 1_4:+60549048 None:intergenic
TAAGATCAAAGGCTGGACTC+GGG 0.611825 1_4:-60549151 Msa0174770:three_prime_UTR
TTAGGCTACTACCAGTCTGA+AGG 0.618703 1_4:-60553026 Msa0174770:five_prime_UTR
GGCGATCATCATATGCTGAA+GGG 0.625903 1_4:-60552913 Msa0174770:CDS
GTGTTGGTTTAAAATACAAG+AGG 0.630776 1_4:+60549190 None:intergenic
GCTTCTTGCACAGGCCAATG+AGG 0.635222 1_4:-60552821 Msa0174770:CDS
GCCACTAAGAAATCATTCGT+CGG 0.643670 1_4:-60552934 Msa0174770:CDS
CTGCCGGCATCATTATTGAG+TGG 0.657290 1_4:+60552763 None:intergenic
AGTTCTGAGCGCGTACAGGG+CGG 0.662417 1_4:-60552965 Msa0174770:CDS
ACCAGTCTGAAGGAAACGAA+AGG 0.664055 1_4:-60553016 Msa0174770:five_prime_UTR
AAGCCTGGAAAAGAGCATGC+TGG 0.668843 1_4:-60550968 Msa0174770:CDS
CAGGAATGTCACCTCCGAAG+CGG 0.670986 1_4:-60552854 Msa0174770:CDS
CGTGCAAACTAGCAAGATTG+CGG 0.673611 1_4:-60549012 Msa0174770:three_prime_UTR
GAGTGGTGCCTGAACGAGCA+TGG 0.673907 1_4:+60552780 None:intergenic
TCATATGCTGAAGGGATCTG+CGG 0.675279 1_4:-60552905 Msa0174770:CDS
GTGGCAATGTGCCATCACCT+TGG 0.676770 1_4:-60549059 Msa0174770:three_prime_UTR
CATGGTAGAGACGAACTCAG+CGG 0.745728 1_4:+60552798 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATTAATTTAAAAAATAC+AGG - chr1_4:60550214-60550233 Msa0174770:intron 10.0%
!! ATTTAATTCTTTCAAATTTA+AGG - chr1_4:60551596-60551615 Msa0174770:intron 10.0%
!! TTTAATTCTTTCAAATTTAA+GGG - chr1_4:60551597-60551616 Msa0174770:intron 10.0%
!!! TTTATTTTTAAACAATGTAT+CGG + chr1_4:60551712-60551731 None:intergenic 10.0%
!! ACTATTAATTTAAAAAATAC+AGG - chr1_4:60550214-60550233 Msa0174770:intron 10.0%
!! ATTTAATTCTTTCAAATTTA+AGG - chr1_4:60551596-60551615 Msa0174770:intron 10.0%
!! TTTAATTCTTTCAAATTTAA+GGG - chr1_4:60551597-60551616 Msa0174770:intron 10.0%
!!! TTTATTTTTAAACAATGTAT+CGG + chr1_4:60551712-60551731 None:intergenic 10.0%
!!! TGTCAACTTATATATTTTTA+TGG - chr1_4:60549925-60549944 Msa0174770:intron 15.0%
!!! TATAGTCCATTTTTATAAAT+TGG - chr1_4:60550026-60550045 Msa0174770:intron 15.0%
!!! ATAGTCCATTTTTATAAATT+GGG - chr1_4:60550027-60550046 Msa0174770:intron 15.0%
!! AAAAACCTTGTAATAATAAT+GGG + chr1_4:60550739-60550758 None:intergenic 15.0%
!! AAAAAACCTTGTAATAATAA+TGG + chr1_4:60550740-60550759 None:intergenic 15.0%
!!! TAGATTGTTTATTTTTGTTT+AGG - chr1_4:60551154-60551173 Msa0174770:intron 15.0%
!! CCAAATGAATATAAAATATA+GGG + chr1_4:60551322-60551341 None:intergenic 15.0%
!!! CCTATATTTTATATTCATTT+GGG - chr1_4:60551320-60551339 Msa0174770:intron 15.0%
!!! TTATTTTTAAACAATGTATC+GGG + chr1_4:60551711-60551730 None:intergenic 15.0%
!!! ATAATATGATAAAAGGTATA+GGG - chr1_4:60551951-60551970 Msa0174770:intron 15.0%
!! CTATTGTTAAAAAAAAACTT+AGG - chr1_4:60552175-60552194 Msa0174770:intron 15.0%
!!! TCTATTTTTATGCAAATTAT+CGG + chr1_4:60552351-60552370 None:intergenic 15.0%
!!! ATTAAAATAGAGTTGATATT+CGG + chr1_4:60552665-60552684 None:intergenic 15.0%
!!! TGTCAACTTATATATTTTTA+TGG - chr1_4:60549925-60549944 Msa0174770:intron 15.0%
!!! TATAGTCCATTTTTATAAAT+TGG - chr1_4:60550026-60550045 Msa0174770:intron 15.0%
!!! ATAGTCCATTTTTATAAATT+GGG - chr1_4:60550027-60550046 Msa0174770:intron 15.0%
!! AAAAACCTTGTAATAATAAT+GGG + chr1_4:60550739-60550758 None:intergenic 15.0%
!! AAAAAACCTTGTAATAATAA+TGG + chr1_4:60550740-60550759 None:intergenic 15.0%
!!! TAGATTGTTTATTTTTGTTT+AGG - chr1_4:60551154-60551173 Msa0174770:intron 15.0%
!! CCAAATGAATATAAAATATA+GGG + chr1_4:60551322-60551341 None:intergenic 15.0%
!!! CCTATATTTTATATTCATTT+GGG - chr1_4:60551320-60551339 Msa0174770:intron 15.0%
!!! TTATTTTTAAACAATGTATC+GGG + chr1_4:60551711-60551730 None:intergenic 15.0%
!!! ATAATATGATAAAAGGTATA+GGG - chr1_4:60551951-60551970 Msa0174770:intron 15.0%
!! CTATTGTTAAAAAAAAACTT+AGG - chr1_4:60552175-60552194 Msa0174770:intron 15.0%
!!! TCTATTTTTATGCAAATTAT+CGG + chr1_4:60552351-60552370 None:intergenic 15.0%
!!! ATTAAAATAGAGTTGATATT+CGG + chr1_4:60552665-60552684 None:intergenic 15.0%
!!! TTTTTGTATAAGCTATAAGA+TGG + chr1_4:60549572-60549591 None:intergenic 20.0%
!! ATTTGCAGATTATCAAATAA+GGG + chr1_4:60549845-60549864 None:intergenic 20.0%
!! AATTTGCAGATTATCAAATA+AGG + chr1_4:60549846-60549865 None:intergenic 20.0%
!! AACTTAGTTTCAACTTAAAT+AGG - chr1_4:60549983-60550002 Msa0174770:intron 20.0%
!!! ATTTCTAAAACAAGATATGA+TGG - chr1_4:60550287-60550306 Msa0174770:intron 20.0%
!! TATAAGTTCATAAGTGTTTA+TGG - chr1_4:60550835-60550854 Msa0174770:intron 20.0%
!!! CCCTATATTTTATATTCATT+TGG - chr1_4:60551319-60551338 Msa0174770:intron 20.0%
!! CCCAAATGAATATAAAATAT+AGG + chr1_4:60551323-60551342 None:intergenic 20.0%
!!! TTTTATATTCATTTGGGTTT+TGG - chr1_4:60551326-60551345 Msa0174770:intron 20.0%
!!! TTTATATTCATTTGGGTTTT+GGG - chr1_4:60551327-60551346 Msa0174770:intron 20.0%
!!! TATTTTTAAACAATGTATCG+GGG + chr1_4:60551710-60551729 None:intergenic 20.0%
!! TTAGGTCATAATATGATAAA+AGG - chr1_4:60551944-60551963 Msa0174770:intron 20.0%
!!! CATAATATGATAAAAGGTAT+AGG - chr1_4:60551950-60551969 Msa0174770:intron 20.0%
!!! TAATATGATAAAAGGTATAG+GGG - chr1_4:60551952-60551971 Msa0174770:intron 20.0%
!!! TTTTTGTATAAGCTATAAGA+TGG + chr1_4:60549572-60549591 None:intergenic 20.0%
!! ATTTGCAGATTATCAAATAA+GGG + chr1_4:60549845-60549864 None:intergenic 20.0%
!! AATTTGCAGATTATCAAATA+AGG + chr1_4:60549846-60549865 None:intergenic 20.0%
!! AACTTAGTTTCAACTTAAAT+AGG - chr1_4:60549983-60550002 Msa0174770:intron 20.0%
!!! ATTTCTAAAACAAGATATGA+TGG - chr1_4:60550287-60550306 Msa0174770:intron 20.0%
!! TATAAGTTCATAAGTGTTTA+TGG - chr1_4:60550835-60550854 Msa0174770:intron 20.0%
!!! CCCTATATTTTATATTCATT+TGG - chr1_4:60551319-60551338 Msa0174770:intron 20.0%
!! CCCAAATGAATATAAAATAT+AGG + chr1_4:60551323-60551342 None:intergenic 20.0%
!!! TTTTATATTCATTTGGGTTT+TGG - chr1_4:60551326-60551345 Msa0174770:intron 20.0%
!!! TTTATATTCATTTGGGTTTT+GGG - chr1_4:60551327-60551346 Msa0174770:intron 20.0%
!!! TATTTTTAAACAATGTATCG+GGG + chr1_4:60551710-60551729 None:intergenic 20.0%
!! TTAGGTCATAATATGATAAA+AGG - chr1_4:60551944-60551963 Msa0174770:intron 20.0%
!!! CATAATATGATAAAAGGTAT+AGG - chr1_4:60551950-60551969 Msa0174770:intron 20.0%
!!! TAATATGATAAAAGGTATAG+GGG - chr1_4:60551952-60551971 Msa0174770:intron 20.0%
!! GTTCTATGTAATCATTGTTT+TGG - chr1_4:60549355-60549374 Msa0174770:intron 25.0%
!!! TACTTTTTGTTGTTTTCAAG+TGG - chr1_4:60549387-60549406 Msa0174770:intron 25.0%
!! AAGAACCATGAACTAATTTT+AGG + chr1_4:60549890-60549909 None:intergenic 25.0%
! TGAGACCCAATTTATAAAAA+TGG + chr1_4:60550035-60550054 None:intergenic 25.0%
! TTTACTATCTTACTAGACTA+TGG - chr1_4:60550163-60550182 Msa0174770:intron 25.0%
!! AAGCAGAGAAAAGTTTATTT+TGG - chr1_4:60550457-60550476 Msa0174770:intron 25.0%
!!! AGCAGAGAAAAGTTTATTTT+GGG - chr1_4:60550458-60550477 Msa0174770:intron 25.0%
!! GTTTCTGAAGAAAATAAGAT+AGG - chr1_4:60550672-60550691 Msa0174770:intron 25.0%
! GAAAACCCATTATTATTACA+AGG - chr1_4:60550731-60550750 Msa0174770:intron 25.0%
! TACGAATAATTTCTTCTGAT+GGG + chr1_4:60551083-60551102 None:intergenic 25.0%
! TTACGAATAATTTCTTCTGA+TGG + chr1_4:60551084-60551103 None:intergenic 25.0%
! AAATCATACAACACATTGAA+AGG + chr1_4:60551255-60551274 None:intergenic 25.0%
! ATGGTTATTTACAACTTACA+AGG - chr1_4:60551413-60551432 Msa0174770:intron 25.0%
! TCAAAACAATCAATAAACCA+TGG - chr1_4:60551798-60551817 Msa0174770:intron 25.0%
!! TATAATTATCGATGTTGCTT+AGG - chr1_4:60551926-60551945 Msa0174770:intron 25.0%
! AATAAACTATGAAATGCTAC+AGG + chr1_4:60552492-60552511 None:intergenic 25.0%
! AACAAGGTTTAATCAGTTAA+TGG + chr1_4:60552689-60552708 None:intergenic 25.0%
! GTTTAACTAGTTAGTCAAAA+TGG + chr1_4:60552924-60552943 None:intergenic 25.0%
! ACTAACTAGTTAAACACAAT+TGG - chr1_4:60552929-60552948 Msa0174770:CDS 25.0%
!! GTTCTATGTAATCATTGTTT+TGG - chr1_4:60549355-60549374 Msa0174770:intron 25.0%
!!! TACTTTTTGTTGTTTTCAAG+TGG - chr1_4:60549387-60549406 Msa0174770:intron 25.0%
!! AAGAACCATGAACTAATTTT+AGG + chr1_4:60549890-60549909 None:intergenic 25.0%
! TGAGACCCAATTTATAAAAA+TGG + chr1_4:60550035-60550054 None:intergenic 25.0%
! TTTACTATCTTACTAGACTA+TGG - chr1_4:60550163-60550182 Msa0174770:intron 25.0%
!! AAGCAGAGAAAAGTTTATTT+TGG - chr1_4:60550457-60550476 Msa0174770:intron 25.0%
!!! AGCAGAGAAAAGTTTATTTT+GGG - chr1_4:60550458-60550477 Msa0174770:intron 25.0%
!! GTTTCTGAAGAAAATAAGAT+AGG - chr1_4:60550672-60550691 Msa0174770:intron 25.0%
! GAAAACCCATTATTATTACA+AGG - chr1_4:60550731-60550750 Msa0174770:intron 25.0%
! TACGAATAATTTCTTCTGAT+GGG + chr1_4:60551083-60551102 None:intergenic 25.0%
! TTACGAATAATTTCTTCTGA+TGG + chr1_4:60551084-60551103 None:intergenic 25.0%
! AAATCATACAACACATTGAA+AGG + chr1_4:60551255-60551274 None:intergenic 25.0%
! ATGGTTATTTACAACTTACA+AGG - chr1_4:60551413-60551432 Msa0174770:intron 25.0%
! TCAAAACAATCAATAAACCA+TGG - chr1_4:60551798-60551817 Msa0174770:intron 25.0%
!! TATAATTATCGATGTTGCTT+AGG - chr1_4:60551926-60551945 Msa0174770:intron 25.0%
! AATAAACTATGAAATGCTAC+AGG + chr1_4:60552492-60552511 None:intergenic 25.0%
! AACAAGGTTTAATCAGTTAA+TGG + chr1_4:60552689-60552708 None:intergenic 25.0%
! GTTTAACTAGTTAGTCAAAA+TGG + chr1_4:60552924-60552943 None:intergenic 25.0%
! ACTAACTAGTTAAACACAAT+TGG - chr1_4:60552929-60552948 Msa0174770:CDS 25.0%
AGTGAAACAAATAATCGAAC+AGG + chr1_4:60549307-60549326 None:intergenic 30.0%
GTTCGATTATTTGTTTCACT+TGG - chr1_4:60549307-60549326 Msa0174770:intron 30.0%
!! ATTGTTGTTTAGGATCAGTT+TGG - chr1_4:60549418-60549437 Msa0174770:intron 30.0%
TTATGAGTCCTTCTTAACTA+AGG - chr1_4:60549454-60549473 Msa0174770:intron 30.0%
TATGAGTCCTTCTTAACTAA+GGG - chr1_4:60549455-60549474 Msa0174770:intron 30.0%
! AACTAAGGGTGTGTTTAAAT+TGG - chr1_4:60549469-60549488 Msa0174770:intron 30.0%
GGTGTGTTTAAATTGGATTA+TGG - chr1_4:60549476-60549495 Msa0174770:intron 30.0%
GAAACAGTTTATGACATGTT+CGG - chr1_4:60549498-60549517 Msa0174770:intron 30.0%
CTTGGAGAGCTTATAAAAAT+AGG + chr1_4:60549536-60549555 None:intergenic 30.0%
!!! GATGGTTTTATAAGCTATCT+TGG + chr1_4:60549554-60549573 None:intergenic 30.0%
! GATTTGAGTTAAGGGATTAA+AGG - chr1_4:60549713-60549732 Msa0174770:intron 30.0%
AAAGGAATTGATGAGTCAAA+TGG - chr1_4:60549731-60549750 Msa0174770:intron 30.0%
! AACTAATTTTAGGCTCTGTT+TGG + chr1_4:60549880-60549899 None:intergenic 30.0%
TCAGCAGGTAATTATAGAAA+GGG + chr1_4:60550112-60550131 None:intergenic 30.0%
TGAGAAGTTTATGCAAACAT+GGG - chr1_4:60550129-60550148 Msa0174770:intron 30.0%
AATTGAGATGTACACATATG+TGG + chr1_4:60550243-60550262 None:intergenic 30.0%
! TTGATTACACCATTTCTAGA+TGG + chr1_4:60550327-60550346 None:intergenic 30.0%
CTCTTAGTTGTAAGTCAAAA+AGG - chr1_4:60550808-60550827 Msa0174770:intron 30.0%
!! GAGAGTGTCTGAAAAAATTT+AGG - chr1_4:60550869-60550888 Msa0174770:intron 30.0%
AGAAAGATTCAGAACTAGTT+TGG + chr1_4:60550989-60551008 None:intergenic 30.0%
GAAGAAATTATTCGTAAGTC+AGG - chr1_4:60551087-60551106 Msa0174770:intron 30.0%
TAAGTAATGATTCTAGTGCT+TGG - chr1_4:60551182-60551201 Msa0174770:intron 30.0%
AAGTAATGATTCTAGTGCTT+GGG - chr1_4:60551183-60551202 Msa0174770:intron 30.0%
! GTTTCTTTTTGTGGTAGTAT+TGG - chr1_4:60551225-60551244 Msa0174770:intron 30.0%
! TTTTGTCTCTTCATTCTCAA+AGG + chr1_4:60551474-60551493 None:intergenic 30.0%
ATGAAGAGACAAAACTGAAA+TGG - chr1_4:60551480-60551499 Msa0174770:intron 30.0%
TGAAGAGACAAAACTGAAAT+GGG - chr1_4:60551481-60551500 Msa0174770:intron 30.0%
!! TAGAAGTACTAAAACTCAAG+TGG - chr1_4:60551556-60551575 Msa0174770:intron 30.0%
TAACTCTCAAAATTGAACAC+TGG + chr1_4:60551878-60551897 None:intergenic 30.0%
ATTCTTACACTGATGAACAA+TGG + chr1_4:60551993-60552012 None:intergenic 30.0%
ACTATAGAGTGGAGTTTATT+TGG - chr1_4:60552032-60552051 Msa0174770:intron 30.0%
ATTCCTGATTTCATTGAACT+TGG - chr1_4:60552130-60552149 Msa0174770:intron 30.0%
AACTTCACATCAGAAAAACA+TGG + chr1_4:60552410-60552429 None:intergenic 30.0%
TATATAAGCAAGTGGTAACA+AGG + chr1_4:60552705-60552724 None:intergenic 30.0%
CAAAAATTAGACTCTATCGT+GGG + chr1_4:60552731-60552750 None:intergenic 30.0%
!! GTGTTGGTTTAAAATACAAG+AGG + chr1_4:60552823-60552842 None:intergenic 30.0%
! TTATGTGCTACTAAGATCAA+AGG - chr1_4:60552848-60552867 Msa0174770:CDS 30.0%
AACTAGTTAAACACAATTGG+TGG - chr1_4:60552932-60552951 Msa0174770:CDS 30.0%
AGTGAAACAAATAATCGAAC+AGG + chr1_4:60549307-60549326 None:intergenic 30.0%
GTTCGATTATTTGTTTCACT+TGG - chr1_4:60549307-60549326 Msa0174770:intron 30.0%
!! ATTGTTGTTTAGGATCAGTT+TGG - chr1_4:60549418-60549437 Msa0174770:intron 30.0%
TTATGAGTCCTTCTTAACTA+AGG - chr1_4:60549454-60549473 Msa0174770:intron 30.0%
TATGAGTCCTTCTTAACTAA+GGG - chr1_4:60549455-60549474 Msa0174770:intron 30.0%
! AACTAAGGGTGTGTTTAAAT+TGG - chr1_4:60549469-60549488 Msa0174770:intron 30.0%
GGTGTGTTTAAATTGGATTA+TGG - chr1_4:60549476-60549495 Msa0174770:intron 30.0%
GAAACAGTTTATGACATGTT+CGG - chr1_4:60549498-60549517 Msa0174770:intron 30.0%
CTTGGAGAGCTTATAAAAAT+AGG + chr1_4:60549536-60549555 None:intergenic 30.0%
!!! GATGGTTTTATAAGCTATCT+TGG + chr1_4:60549554-60549573 None:intergenic 30.0%
! GATTTGAGTTAAGGGATTAA+AGG - chr1_4:60549713-60549732 Msa0174770:intron 30.0%
AAAGGAATTGATGAGTCAAA+TGG - chr1_4:60549731-60549750 Msa0174770:intron 30.0%
! AACTAATTTTAGGCTCTGTT+TGG + chr1_4:60549880-60549899 None:intergenic 30.0%
TCAGCAGGTAATTATAGAAA+GGG + chr1_4:60550112-60550131 None:intergenic 30.0%
TGAGAAGTTTATGCAAACAT+GGG - chr1_4:60550129-60550148 Msa0174770:intron 30.0%
AATTGAGATGTACACATATG+TGG + chr1_4:60550243-60550262 None:intergenic 30.0%
! TTGATTACACCATTTCTAGA+TGG + chr1_4:60550327-60550346 None:intergenic 30.0%
CTCTTAGTTGTAAGTCAAAA+AGG - chr1_4:60550808-60550827 Msa0174770:intron 30.0%
!! GAGAGTGTCTGAAAAAATTT+AGG - chr1_4:60550869-60550888 Msa0174770:intron 30.0%
AGAAAGATTCAGAACTAGTT+TGG + chr1_4:60550989-60551008 None:intergenic 30.0%
GAAGAAATTATTCGTAAGTC+AGG - chr1_4:60551087-60551106 Msa0174770:intron 30.0%
TAAGTAATGATTCTAGTGCT+TGG - chr1_4:60551182-60551201 Msa0174770:intron 30.0%
AAGTAATGATTCTAGTGCTT+GGG - chr1_4:60551183-60551202 Msa0174770:intron 30.0%
! GTTTCTTTTTGTGGTAGTAT+TGG - chr1_4:60551225-60551244 Msa0174770:intron 30.0%
! TTTTGTCTCTTCATTCTCAA+AGG + chr1_4:60551474-60551493 None:intergenic 30.0%
ATGAAGAGACAAAACTGAAA+TGG - chr1_4:60551480-60551499 Msa0174770:intron 30.0%
TGAAGAGACAAAACTGAAAT+GGG - chr1_4:60551481-60551500 Msa0174770:intron 30.0%
!! TAGAAGTACTAAAACTCAAG+TGG - chr1_4:60551556-60551575 Msa0174770:intron 30.0%
TAACTCTCAAAATTGAACAC+TGG + chr1_4:60551878-60551897 None:intergenic 30.0%
ATTCTTACACTGATGAACAA+TGG + chr1_4:60551993-60552012 None:intergenic 30.0%
ACTATAGAGTGGAGTTTATT+TGG - chr1_4:60552032-60552051 Msa0174770:intron 30.0%
ATTCCTGATTTCATTGAACT+TGG - chr1_4:60552130-60552149 Msa0174770:intron 30.0%
AACTTCACATCAGAAAAACA+TGG + chr1_4:60552410-60552429 None:intergenic 30.0%
TATATAAGCAAGTGGTAACA+AGG + chr1_4:60552705-60552724 None:intergenic 30.0%
CAAAAATTAGACTCTATCGT+GGG + chr1_4:60552731-60552750 None:intergenic 30.0%
!! GTGTTGGTTTAAAATACAAG+AGG + chr1_4:60552823-60552842 None:intergenic 30.0%
! TTATGTGCTACTAAGATCAA+AGG - chr1_4:60552848-60552867 Msa0174770:CDS 30.0%
AACTAGTTAAACACAATTGG+TGG - chr1_4:60552932-60552951 Msa0174770:CDS 30.0%
GAAACAAATAATCGAACAGG+TGG + chr1_4:60549304-60549323 None:intergenic 35.0%
!! GGCAGTAAACATTGTTGTTT+AGG - chr1_4:60549408-60549427 Msa0174770:intron 35.0%
AGAAGGACTCATAAGCTAAA+AGG + chr1_4:60549448-60549467 None:intergenic 35.0%
AAACACACCCTTAGTTAAGA+AGG + chr1_4:60549465-60549484 None:intergenic 35.0%
TATCAATGATAAGCCCTTAC+TGG - chr1_4:60549652-60549671 Msa0174770:intron 35.0%
ATCAATGATAAGCCCTTACT+GGG - chr1_4:60549653-60549672 Msa0174770:intron 35.0%
!! AGCTCAACTGATTTGAGTTA+AGG - chr1_4:60549704-60549723 Msa0174770:intron 35.0%
!! GCTCAACTGATTTGAGTTAA+GGG - chr1_4:60549705-60549724 Msa0174770:intron 35.0%
ATTGATGAGTCAAATGGTCT+AGG - chr1_4:60549737-60549756 Msa0174770:intron 35.0%
TTGATGAGTCAAATGGTCTA+GGG - chr1_4:60549738-60549757 Msa0174770:intron 35.0%
CAGAGCCTAAAATTAGTTCA+TGG - chr1_4:60549882-60549901 Msa0174770:intron 35.0%
!!! CACAGTTTTTTTGAGGAACT+AGG - chr1_4:60550053-60550072 Msa0174770:intron 35.0%
!!! TTTTTTGAGGAACTAGGAAC+TGG - chr1_4:60550059-60550078 Msa0174770:intron 35.0%
CTCAGCAGGTAATTATAGAA+AGG + chr1_4:60550113-60550132 None:intergenic 35.0%
CTGAGAAGTTTATGCAAACA+TGG - chr1_4:60550128-60550147 Msa0174770:intron 35.0%
AAGTTTATGCAAACATGGGT+TGG - chr1_4:60550133-60550152 Msa0174770:intron 35.0%
TACCTTCATCCATCTAGAAA+TGG - chr1_4:60550315-60550334 Msa0174770:intron 35.0%
AACTTCTCAACAAGCACTTA+AGG + chr1_4:60550776-60550795 None:intergenic 35.0%
! TTTGACTTACAACTAAGAGC+TGG + chr1_4:60550807-60550826 None:intergenic 35.0%
TTCTTCTGATGGGATTTCAA+GGG + chr1_4:60551073-60551092 None:intergenic 35.0%
TTTCTTCTGATGGGATTTCA+AGG + chr1_4:60551074-60551093 None:intergenic 35.0%
GGATAAAGATAGAAGTGAAG+AGG - chr1_4:60551108-60551127 Msa0174770:intron 35.0%
! TCTCCTTAGGTTTCTTTTTG+TGG - chr1_4:60551216-60551235 Msa0174770:intron 35.0%
CTACCACAAAAAGAAACCTA+AGG + chr1_4:60551222-60551241 None:intergenic 35.0%
AACAAGCTTATCGTGCATAA+TGG - chr1_4:60551394-60551413 Msa0174770:intron 35.0%
!! CCTCATGTTTTTACGCATTA+GGG + chr1_4:60551445-60551464 None:intergenic 35.0%
!! TCCTCATGTTTTTACGCATT+AGG + chr1_4:60551446-60551465 None:intergenic 35.0%
AAAATTGAACACTGGTACAG+TGG + chr1_4:60551870-60551889 None:intergenic 35.0%
TGTGCTCTTAAACAAGAGTA+TGG + chr1_4:60552078-60552097 None:intergenic 35.0%
CAGGAATTATCCTAAACAAG+TGG + chr1_4:60552117-60552136 None:intergenic 35.0%
GATCCAAGTTCAATGAAATC+AGG + chr1_4:60552136-60552155 None:intergenic 35.0%
TCCTCATTAGATTGTAGGTT+GGG + chr1_4:60552232-60552251 None:intergenic 35.0%
TTCCTCATTAGATTGTAGGT+TGG + chr1_4:60552233-60552252 None:intergenic 35.0%
ATATGCAGTTTGTAGAGCTT+GGG + chr1_4:60552281-60552300 None:intergenic 35.0%
TATATGCAGTTTGTAGAGCT+TGG + chr1_4:60552282-60552301 None:intergenic 35.0%
AGTGTGAAGTGTGAAACAAT+AGG - chr1_4:60552525-60552544 Msa0174770:intron 35.0%
TTCTGCATATCAACTACGTT+TGG + chr1_4:60552598-60552617 None:intergenic 35.0%
CCAAAAATTAGACTCTATCG+TGG + chr1_4:60552732-60552751 None:intergenic 35.0%
! CCACGATAGAGTCTAATTTT+TGG - chr1_4:60552729-60552748 Msa0174770:intron 35.0%
GTAGCACATAAAGTTTGTGT+TGG + chr1_4:60552839-60552858 None:intergenic 35.0%
CACATAAATTTCAGCTACCA+AGG + chr1_4:60552971-60552990 None:intergenic 35.0%
GCGGTCATTCAAATAATTGA+TGG - chr1_4:60553017-60553036 Msa0174770:five_prime_UTR 35.0%
GAAACAAATAATCGAACAGG+TGG + chr1_4:60549304-60549323 None:intergenic 35.0%
!! GGCAGTAAACATTGTTGTTT+AGG - chr1_4:60549408-60549427 Msa0174770:intron 35.0%
AGAAGGACTCATAAGCTAAA+AGG + chr1_4:60549448-60549467 None:intergenic 35.0%
AAACACACCCTTAGTTAAGA+AGG + chr1_4:60549465-60549484 None:intergenic 35.0%
TATCAATGATAAGCCCTTAC+TGG - chr1_4:60549652-60549671 Msa0174770:intron 35.0%
ATCAATGATAAGCCCTTACT+GGG - chr1_4:60549653-60549672 Msa0174770:intron 35.0%
!! AGCTCAACTGATTTGAGTTA+AGG - chr1_4:60549704-60549723 Msa0174770:intron 35.0%
!! GCTCAACTGATTTGAGTTAA+GGG - chr1_4:60549705-60549724 Msa0174770:intron 35.0%
ATTGATGAGTCAAATGGTCT+AGG - chr1_4:60549737-60549756 Msa0174770:intron 35.0%
TTGATGAGTCAAATGGTCTA+GGG - chr1_4:60549738-60549757 Msa0174770:intron 35.0%
CAGAGCCTAAAATTAGTTCA+TGG - chr1_4:60549882-60549901 Msa0174770:intron 35.0%
!!! CACAGTTTTTTTGAGGAACT+AGG - chr1_4:60550053-60550072 Msa0174770:intron 35.0%
!!! TTTTTTGAGGAACTAGGAAC+TGG - chr1_4:60550059-60550078 Msa0174770:intron 35.0%
CTCAGCAGGTAATTATAGAA+AGG + chr1_4:60550113-60550132 None:intergenic 35.0%
CTGAGAAGTTTATGCAAACA+TGG - chr1_4:60550128-60550147 Msa0174770:intron 35.0%
AAGTTTATGCAAACATGGGT+TGG - chr1_4:60550133-60550152 Msa0174770:intron 35.0%
TACCTTCATCCATCTAGAAA+TGG - chr1_4:60550315-60550334 Msa0174770:intron 35.0%
AACTTCTCAACAAGCACTTA+AGG + chr1_4:60550776-60550795 None:intergenic 35.0%
! TTTGACTTACAACTAAGAGC+TGG + chr1_4:60550807-60550826 None:intergenic 35.0%
TTCTTCTGATGGGATTTCAA+GGG + chr1_4:60551073-60551092 None:intergenic 35.0%
TTTCTTCTGATGGGATTTCA+AGG + chr1_4:60551074-60551093 None:intergenic 35.0%
GGATAAAGATAGAAGTGAAG+AGG - chr1_4:60551108-60551127 Msa0174770:intron 35.0%
! TCTCCTTAGGTTTCTTTTTG+TGG - chr1_4:60551216-60551235 Msa0174770:intron 35.0%
CTACCACAAAAAGAAACCTA+AGG + chr1_4:60551222-60551241 None:intergenic 35.0%
AACAAGCTTATCGTGCATAA+TGG - chr1_4:60551394-60551413 Msa0174770:intron 35.0%
!! CCTCATGTTTTTACGCATTA+GGG + chr1_4:60551445-60551464 None:intergenic 35.0%
!! TCCTCATGTTTTTACGCATT+AGG + chr1_4:60551446-60551465 None:intergenic 35.0%
AAAATTGAACACTGGTACAG+TGG + chr1_4:60551870-60551889 None:intergenic 35.0%
TGTGCTCTTAAACAAGAGTA+TGG + chr1_4:60552078-60552097 None:intergenic 35.0%
CAGGAATTATCCTAAACAAG+TGG + chr1_4:60552117-60552136 None:intergenic 35.0%
GATCCAAGTTCAATGAAATC+AGG + chr1_4:60552136-60552155 None:intergenic 35.0%
TCCTCATTAGATTGTAGGTT+GGG + chr1_4:60552232-60552251 None:intergenic 35.0%
TTCCTCATTAGATTGTAGGT+TGG + chr1_4:60552233-60552252 None:intergenic 35.0%
ATATGCAGTTTGTAGAGCTT+GGG + chr1_4:60552281-60552300 None:intergenic 35.0%
TATATGCAGTTTGTAGAGCT+TGG + chr1_4:60552282-60552301 None:intergenic 35.0%
AGTGTGAAGTGTGAAACAAT+AGG - chr1_4:60552525-60552544 Msa0174770:intron 35.0%
TTCTGCATATCAACTACGTT+TGG + chr1_4:60552598-60552617 None:intergenic 35.0%
CCAAAAATTAGACTCTATCG+TGG + chr1_4:60552732-60552751 None:intergenic 35.0%
! CCACGATAGAGTCTAATTTT+TGG - chr1_4:60552729-60552748 Msa0174770:intron 35.0%
GTAGCACATAAAGTTTGTGT+TGG + chr1_4:60552839-60552858 None:intergenic 35.0%
CACATAAATTTCAGCTACCA+AGG + chr1_4:60552971-60552990 None:intergenic 35.0%
GCGGTCATTCAAATAATTGA+TGG - chr1_4:60553017-60553036 Msa0174770:five_prime_UTR 35.0%
TGAAGGAAACGAAAGGAGTA+GGG - chr1_4:60549001-60549020 Msa0174770:three_prime_UTR 40.0%
GCCACTAAGAAATCATTCGT+CGG - chr1_4:60549076-60549095 Msa0174770:three_prime_UTR 40.0%
GTAAGCAGTTTGAAGAAAGC+AGG - chr1_4:60549137-60549156 Msa0174770:three_prime_UTR 40.0%
AATAATGATGCCGGCAGTTA+TGG - chr1_4:60549253-60549272 Msa0174770:intron 40.0%
! AGATAGAGTACCATAACTGC+CGG + chr1_4:60549266-60549285 None:intergenic 40.0%
! TTAGTATTTTGCTCCGTGTC+AGG + chr1_4:60549771-60549790 None:intergenic 40.0%
!!! TGGGTCTCACAGTTTTTTTG+AGG - chr1_4:60550046-60550065 Msa0174770:intron 40.0%
GTTTGCATAAACTTCTCAGC+AGG + chr1_4:60550127-60550146 None:intergenic 40.0%
TATGGACATCTGACATGACA+CGG - chr1_4:60550181-60550200 Msa0174770:intron 40.0%
! CACCATTTCTAGATGGATGA+AGG + chr1_4:60550320-60550339 None:intergenic 40.0%
CTCTAGCAAACATCTTTGAG+AGG - chr1_4:60550396-60550415 Msa0174770:intron 40.0%
! GAGTATCCATAGAGTGTCTA+AGG - chr1_4:60550427-60550446 Msa0174770:intron 40.0%
GGGACTTCAAATTTCTCCTT+AGG - chr1_4:60551203-60551222 Msa0174770:intron 40.0%
TCGAAACAAAGCTACCAGAA+AGG + chr1_4:60551292-60551311 None:intergenic 40.0%
TTGTGTGTCTCTAAGTGTGT+GGG + chr1_4:60551354-60551373 None:intergenic 40.0%
CCCTAATGCGTAAAAACATG+AGG - chr1_4:60551442-60551461 Msa0174770:intron 40.0%
TCAAGTGGATGCAAACTGTT+GGG - chr1_4:60551571-60551590 Msa0174770:intron 40.0%
GGTATAGGGGAAATAGAGTA+TGG - chr1_4:60551965-60551984 Msa0174770:intron 40.0%
TGCATCACGAAACTATAGAG+TGG - chr1_4:60552021-60552040 Msa0174770:intron 40.0%
TGGAGACATGTCAATGTAGT+TGG - chr1_4:60552052-60552071 Msa0174770:intron 40.0%
! AAGAGCACACTTCTTTAGCT+AGG - chr1_4:60552089-60552108 Msa0174770:intron 40.0%
TAGCTAGGTTCCACTTGTTT+AGG - chr1_4:60552104-60552123 Msa0174770:intron 40.0%
TGGGGTTTCACAACAAAACT+AGG + chr1_4:60552213-60552232 None:intergenic 40.0%
CCTCATTAGATTGTAGGTTG+GGG + chr1_4:60552231-60552250 None:intergenic 40.0%
GCAGTTCCTCATTAGATTGT+AGG + chr1_4:60552237-60552256 None:intergenic 40.0%
ACAAGCACCAAATGGTTAGT+CGG + chr1_4:60552317-60552336 None:intergenic 40.0%
CCTTGTAAACAAGCACCAAA+TGG + chr1_4:60552325-60552344 None:intergenic 40.0%
!! CCATTTGGTGCTTGTTTACA+AGG - chr1_4:60552322-60552341 Msa0174770:intron 40.0%
CAGCAATTTCAATCTGGCTA+GGG + chr1_4:60552558-60552577 None:intergenic 40.0%
ACAGCAATTTCAATCTGGCT+AGG + chr1_4:60552559-60552578 None:intergenic 40.0%
TCCTGACAGCAATTTCAATC+TGG + chr1_4:60552564-60552583 None:intergenic 40.0%
CAGAATACGACGTAGTTAGA+AGG - chr1_4:60552613-60552632 Msa0174770:intron 40.0%
GTGGGTCATATATAAGCAAG+TGG + chr1_4:60552713-60552732 None:intergenic 40.0%
AATTTCAGCTACCAAGGTGA+TGG + chr1_4:60552965-60552984 None:intergenic 40.0%
TGAAGGAAACGAAAGGAGTA+GGG - chr1_4:60549001-60549020 Msa0174770:three_prime_UTR 40.0%
GCCACTAAGAAATCATTCGT+CGG - chr1_4:60549076-60549095 Msa0174770:three_prime_UTR 40.0%
GTAAGCAGTTTGAAGAAAGC+AGG - chr1_4:60549137-60549156 Msa0174770:three_prime_UTR 40.0%
AATAATGATGCCGGCAGTTA+TGG - chr1_4:60549253-60549272 Msa0174770:intron 40.0%
! AGATAGAGTACCATAACTGC+CGG + chr1_4:60549266-60549285 None:intergenic 40.0%
! TTAGTATTTTGCTCCGTGTC+AGG + chr1_4:60549771-60549790 None:intergenic 40.0%
!!! TGGGTCTCACAGTTTTTTTG+AGG - chr1_4:60550046-60550065 Msa0174770:intron 40.0%
GTTTGCATAAACTTCTCAGC+AGG + chr1_4:60550127-60550146 None:intergenic 40.0%
TATGGACATCTGACATGACA+CGG - chr1_4:60550181-60550200 Msa0174770:intron 40.0%
! CACCATTTCTAGATGGATGA+AGG + chr1_4:60550320-60550339 None:intergenic 40.0%
CTCTAGCAAACATCTTTGAG+AGG - chr1_4:60550396-60550415 Msa0174770:intron 40.0%
! GAGTATCCATAGAGTGTCTA+AGG - chr1_4:60550427-60550446 Msa0174770:intron 40.0%
GGGACTTCAAATTTCTCCTT+AGG - chr1_4:60551203-60551222 Msa0174770:intron 40.0%
TCGAAACAAAGCTACCAGAA+AGG + chr1_4:60551292-60551311 None:intergenic 40.0%
TTGTGTGTCTCTAAGTGTGT+GGG + chr1_4:60551354-60551373 None:intergenic 40.0%
CCCTAATGCGTAAAAACATG+AGG - chr1_4:60551442-60551461 Msa0174770:intron 40.0%
TCAAGTGGATGCAAACTGTT+GGG - chr1_4:60551571-60551590 Msa0174770:intron 40.0%
GGTATAGGGGAAATAGAGTA+TGG - chr1_4:60551965-60551984 Msa0174770:intron 40.0%
TGCATCACGAAACTATAGAG+TGG - chr1_4:60552021-60552040 Msa0174770:intron 40.0%
TGGAGACATGTCAATGTAGT+TGG - chr1_4:60552052-60552071 Msa0174770:intron 40.0%
! AAGAGCACACTTCTTTAGCT+AGG - chr1_4:60552089-60552108 Msa0174770:intron 40.0%
TAGCTAGGTTCCACTTGTTT+AGG - chr1_4:60552104-60552123 Msa0174770:intron 40.0%
TGGGGTTTCACAACAAAACT+AGG + chr1_4:60552213-60552232 None:intergenic 40.0%
CCTCATTAGATTGTAGGTTG+GGG + chr1_4:60552231-60552250 None:intergenic 40.0%
GCAGTTCCTCATTAGATTGT+AGG + chr1_4:60552237-60552256 None:intergenic 40.0%
ACAAGCACCAAATGGTTAGT+CGG + chr1_4:60552317-60552336 None:intergenic 40.0%
CCTTGTAAACAAGCACCAAA+TGG + chr1_4:60552325-60552344 None:intergenic 40.0%
!! CCATTTGGTGCTTGTTTACA+AGG - chr1_4:60552322-60552341 Msa0174770:intron 40.0%
CAGCAATTTCAATCTGGCTA+GGG + chr1_4:60552558-60552577 None:intergenic 40.0%
ACAGCAATTTCAATCTGGCT+AGG + chr1_4:60552559-60552578 None:intergenic 40.0%
TCCTGACAGCAATTTCAATC+TGG + chr1_4:60552564-60552583 None:intergenic 40.0%
CAGAATACGACGTAGTTAGA+AGG - chr1_4:60552613-60552632 Msa0174770:intron 40.0%
GTGGGTCATATATAAGCAAG+TGG + chr1_4:60552713-60552732 None:intergenic 40.0%
AATTTCAGCTACCAAGGTGA+TGG + chr1_4:60552965-60552984 None:intergenic 40.0%
TTAGGCTACTACCAGTCTGA+AGG - chr1_4:60548984-60549003 Msa0174770:three_prime_UTR 45.0%
ACCAGTCTGAAGGAAACGAA+AGG - chr1_4:60548994-60549013 Msa0174770:three_prime_UTR 45.0%
TCCTTTCGTTTCCTTCAGAC+TGG + chr1_4:60548998-60549017 None:intergenic 45.0%
CTGAAGGAAACGAAAGGAGT+AGG - chr1_4:60549000-60549019 Msa0174770:three_prime_UTR 45.0%
GCCGACGAATGATTTCTTAG+TGG + chr1_4:60549080-60549099 None:intergenic 45.0%
GGCGATCATCATATGCTGAA+GGG - chr1_4:60549097-60549116 Msa0174770:three_prime_UTR 45.0%
TCATATGCTGAAGGGATCTG+CGG - chr1_4:60549105-60549124 Msa0174770:three_prime_UTR 45.0%
GCACCACTCAATAATGATGC+CGG - chr1_4:60549244-60549263 Msa0174770:intron 45.0%
ATGATAAGCCCTTACTGGGA+TGG - chr1_4:60549657-60549676 Msa0174770:intron 45.0%
TGATAAGCCCTTACTGGGAT+GGG - chr1_4:60549658-60549677 Msa0174770:intron 45.0%
! ACATCTTTGAGAGGTGACCA+AGG - chr1_4:60550405-60550424 Msa0174770:intron 45.0%
GACACTCTATGGATACTCCT+TGG + chr1_4:60550425-60550444 None:intergenic 45.0%
AGCACACCTTAGACACTCTA+TGG + chr1_4:60550436-60550455 None:intergenic 45.0%
TTTGTTGCAGTAGTGAAGCC+TGG - chr1_4:60551027-60551046 Msa0174770:intron 45.0%
TGTGTGTCTCTAAGTGTGTG+GGG + chr1_4:60551353-60551372 None:intergenic 45.0%
CTTGTGTGTCTCTAAGTGTG+TGG + chr1_4:60551355-60551374 None:intergenic 45.0%
CTCAAGTGGATGCAAACTGT+TGG - chr1_4:60551570-60551589 Msa0174770:intron 45.0%
!! TTTGCTTGAGCTTTGAGGTG+CGG - chr1_4:60551647-60551666 Msa0174770:intron 45.0%
AACAATGTATCGGGGAGTCA+GGG + chr1_4:60551702-60551721 None:intergenic 45.0%
AAACAATGTATCGGGGAGTC+AGG + chr1_4:60551703-60551722 None:intergenic 45.0%
CCCCAACCTACAATCTAATG+AGG - chr1_4:60552228-60552247 Msa0174770:intron 45.0%
AGCTTGGGCTTGTGATTGTT+TGG + chr1_4:60552266-60552285 None:intergenic 45.0%
! CAAATGGTTAGTCGGTAGTC+AGG + chr1_4:60552309-60552328 None:intergenic 45.0%
! CTGACTACCGACTAACCATT+TGG - chr1_4:60552307-60552326 Msa0174770:intron 45.0%
GCCAGATTGAAATTGCTGTC+AGG - chr1_4:60552560-60552579 Msa0174770:intron 45.0%
! GTGCTACTAAGATCAAAGGC+TGG - chr1_4:60552852-60552871 Msa0174770:CDS 45.0%
CTAAGATCAAAGGCTGGACT+CGG - chr1_4:60552858-60552877 Msa0174770:CDS 45.0%
TAAGATCAAAGGCTGGACTC+GGG - chr1_4:60552859-60552878 Msa0174770:CDS 45.0%
CGTGCAAACTAGCAAGATTG+CGG - chr1_4:60552998-60553017 Msa0174770:exon 45.0%
TTAGGCTACTACCAGTCTGA+AGG - chr1_4:60548984-60549003 Msa0174770:three_prime_UTR 45.0%
ACCAGTCTGAAGGAAACGAA+AGG - chr1_4:60548994-60549013 Msa0174770:three_prime_UTR 45.0%
TCCTTTCGTTTCCTTCAGAC+TGG + chr1_4:60548998-60549017 None:intergenic 45.0%
CTGAAGGAAACGAAAGGAGT+AGG - chr1_4:60549000-60549019 Msa0174770:three_prime_UTR 45.0%
GCCGACGAATGATTTCTTAG+TGG + chr1_4:60549080-60549099 None:intergenic 45.0%
GGCGATCATCATATGCTGAA+GGG - chr1_4:60549097-60549116 Msa0174770:three_prime_UTR 45.0%
TCATATGCTGAAGGGATCTG+CGG - chr1_4:60549105-60549124 Msa0174770:three_prime_UTR 45.0%
GCACCACTCAATAATGATGC+CGG - chr1_4:60549244-60549263 Msa0174770:intron 45.0%
ATGATAAGCCCTTACTGGGA+TGG - chr1_4:60549657-60549676 Msa0174770:intron 45.0%
TGATAAGCCCTTACTGGGAT+GGG - chr1_4:60549658-60549677 Msa0174770:intron 45.0%
! ACATCTTTGAGAGGTGACCA+AGG - chr1_4:60550405-60550424 Msa0174770:intron 45.0%
GACACTCTATGGATACTCCT+TGG + chr1_4:60550425-60550444 None:intergenic 45.0%
AGCACACCTTAGACACTCTA+TGG + chr1_4:60550436-60550455 None:intergenic 45.0%
TTTGTTGCAGTAGTGAAGCC+TGG - chr1_4:60551027-60551046 Msa0174770:intron 45.0%
TGTGTGTCTCTAAGTGTGTG+GGG + chr1_4:60551353-60551372 None:intergenic 45.0%
CTTGTGTGTCTCTAAGTGTG+TGG + chr1_4:60551355-60551374 None:intergenic 45.0%
CTCAAGTGGATGCAAACTGT+TGG - chr1_4:60551570-60551589 Msa0174770:intron 45.0%
!! TTTGCTTGAGCTTTGAGGTG+CGG - chr1_4:60551647-60551666 Msa0174770:intron 45.0%
AACAATGTATCGGGGAGTCA+GGG + chr1_4:60551702-60551721 None:intergenic 45.0%
AAACAATGTATCGGGGAGTC+AGG + chr1_4:60551703-60551722 None:intergenic 45.0%
CCCCAACCTACAATCTAATG+AGG - chr1_4:60552228-60552247 Msa0174770:intron 45.0%
AGCTTGGGCTTGTGATTGTT+TGG + chr1_4:60552266-60552285 None:intergenic 45.0%
! CAAATGGTTAGTCGGTAGTC+AGG + chr1_4:60552309-60552328 None:intergenic 45.0%
! CTGACTACCGACTAACCATT+TGG - chr1_4:60552307-60552326 Msa0174770:intron 45.0%
GCCAGATTGAAATTGCTGTC+AGG - chr1_4:60552560-60552579 Msa0174770:intron 45.0%
! GTGCTACTAAGATCAAAGGC+TGG - chr1_4:60552852-60552871 Msa0174770:CDS 45.0%
CTAAGATCAAAGGCTGGACT+CGG - chr1_4:60552858-60552877 Msa0174770:CDS 45.0%
TAAGATCAAAGGCTGGACTC+GGG - chr1_4:60552859-60552878 Msa0174770:CDS 45.0%
CGTGCAAACTAGCAAGATTG+CGG - chr1_4:60552998-60553017 Msa0174770:exon 45.0%
TAGGGCAGAGAGATGACGAA+AGG - chr1_4:60549019-60549038 Msa0174770:three_prime_UTR 50.0%
AGGGCAGAGAGATGACGAAA+GGG - chr1_4:60549020-60549039 Msa0174770:three_prime_UTR 50.0%
CGGCGATCATCATATGCTGA+AGG - chr1_4:60549096-60549115 Msa0174770:three_prime_UTR 50.0%
AAGCTTCTGGATCTCCGCTT+CGG + chr1_4:60549173-60549192 None:intergenic 50.0%
GATCCAGAAGCTTCTTGCAC+AGG - chr1_4:60549180-60549199 Msa0174770:three_prime_UTR 50.0%
CATGGTAGAGACGAACTCAG+CGG + chr1_4:60549215-60549234 None:intergenic 50.0%
CTGCCGGCATCATTATTGAG+TGG + chr1_4:60549250-60549269 None:intergenic 50.0%
GATAAGCCCTTACTGGGATG+GGG - chr1_4:60549659-60549678 Msa0174770:intron 50.0%
ATAAGCCCTTACTGGGATGG+GGG - chr1_4:60549660-60549679 Msa0174770:intron 50.0%
CTAGGGTTCAAGTCCTGACA+CGG - chr1_4:60549755-60549774 Msa0174770:intron 50.0%
GAGGAACTAGGAACTGGAAG+TGG - chr1_4:60550065-60550084 Msa0174770:intron 50.0%
GAGGACACACCTAATCTCAG+AGG - chr1_4:60550554-60550573 Msa0174770:intron 50.0%
!! GCACAGAAGCCTCTGAGATT+AGG + chr1_4:60550566-60550585 None:intergenic 50.0%
! AAGCCTGGAAAAGAGCATGC+TGG - chr1_4:60551042-60551061 Msa0174770:intron 50.0%
CGTGATGTACTGCACCTTTC+TGG - chr1_4:60551275-60551294 Msa0174770:intron 50.0%
TCTACACTTCCTCTCCTCCA+GGG - chr1_4:60551624-60551643 Msa0174770:intron 50.0%
AAAGCTCAAGCAAACCCTGG+AGG + chr1_4:60551641-60551660 None:intergenic 50.0%
CTCAAAGCTCAAGCAAACCC+TGG + chr1_4:60551644-60551663 None:intergenic 50.0%
! CAGGGTTTGCTTGAGCTTTG+AGG - chr1_4:60551642-60551661 Msa0174770:intron 50.0%
TCAGCGACACATATGCACCA+TGG + chr1_4:60551818-60551837 None:intergenic 50.0%
TAGGGCAGAGAGATGACGAA+AGG - chr1_4:60549019-60549038 Msa0174770:three_prime_UTR 50.0%
AGGGCAGAGAGATGACGAAA+GGG - chr1_4:60549020-60549039 Msa0174770:three_prime_UTR 50.0%
CGGCGATCATCATATGCTGA+AGG - chr1_4:60549096-60549115 Msa0174770:three_prime_UTR 50.0%
AAGCTTCTGGATCTCCGCTT+CGG + chr1_4:60549173-60549192 None:intergenic 50.0%
GATCCAGAAGCTTCTTGCAC+AGG - chr1_4:60549180-60549199 Msa0174770:three_prime_UTR 50.0%
CATGGTAGAGACGAACTCAG+CGG + chr1_4:60549215-60549234 None:intergenic 50.0%
CTGCCGGCATCATTATTGAG+TGG + chr1_4:60549250-60549269 None:intergenic 50.0%
GATAAGCCCTTACTGGGATG+GGG - chr1_4:60549659-60549678 Msa0174770:intron 50.0%
ATAAGCCCTTACTGGGATGG+GGG - chr1_4:60549660-60549679 Msa0174770:intron 50.0%
CTAGGGTTCAAGTCCTGACA+CGG - chr1_4:60549755-60549774 Msa0174770:intron 50.0%
GAGGAACTAGGAACTGGAAG+TGG - chr1_4:60550065-60550084 Msa0174770:intron 50.0%
GAGGACACACCTAATCTCAG+AGG - chr1_4:60550554-60550573 Msa0174770:intron 50.0%
!! GCACAGAAGCCTCTGAGATT+AGG + chr1_4:60550566-60550585 None:intergenic 50.0%
! AAGCCTGGAAAAGAGCATGC+TGG - chr1_4:60551042-60551061 Msa0174770:intron 50.0%
CGTGATGTACTGCACCTTTC+TGG - chr1_4:60551275-60551294 Msa0174770:intron 50.0%
TCTACACTTCCTCTCCTCCA+GGG - chr1_4:60551624-60551643 Msa0174770:intron 50.0%
AAAGCTCAAGCAAACCCTGG+AGG + chr1_4:60551641-60551660 None:intergenic 50.0%
CTCAAAGCTCAAGCAAACCC+TGG + chr1_4:60551644-60551663 None:intergenic 50.0%
! CAGGGTTTGCTTGAGCTTTG+AGG - chr1_4:60551642-60551661 Msa0174770:intron 50.0%
TCAGCGACACATATGCACCA+TGG + chr1_4:60551818-60551837 None:intergenic 50.0%
!! GCAAGTTCTGAGCGCGTACA+GGG - chr1_4:60549042-60549061 Msa0174770:three_prime_UTR 55.0%
CAGGAATGTCACCTCCGAAG+CGG - chr1_4:60549156-60549175 Msa0174770:three_prime_UTR 55.0%
TGGCCTGTGCAAGAAGCTTC+TGG + chr1_4:60549186-60549205 None:intergenic 55.0%
GCTTCTTGCACAGGCCAATG+AGG - chr1_4:60549189-60549208 Msa0174770:three_prime_UTR 55.0%
CGTCTCTACCATGCTCGTTC+AGG - chr1_4:60549222-60549241 Msa0174770:intron 55.0%
CTGACATGACACGGACGTGT+CGG - chr1_4:60550190-60550209 Msa0174770:intron 55.0%
GCGTCGTACGAGTTTCGTAC+AGG - chr1_4:60550504-60550523 Msa0174770:intron 55.0%
! GCACCAGCATGCTCTTTTCC+AGG + chr1_4:60551048-60551067 None:intergenic 55.0%
GTCTACACTTCCTCTCCTCC+AGG - chr1_4:60551623-60551642 Msa0174770:intron 55.0%
TCAAGCAAACCCTGGAGGAG+AGG + chr1_4:60551636-60551655 None:intergenic 55.0%
AATGTATCGGGGAGTCAGGG+TGG + chr1_4:60551699-60551718 None:intergenic 55.0%
TGTCGCTGACAGCTGAGTTC+AGG - chr1_4:60551829-60551848 Msa0174770:intron 55.0%
GTGGCAATGTGCCATCACCT+TGG - chr1_4:60552951-60552970 Msa0174770:CDS 55.0%
!! GCAAGTTCTGAGCGCGTACA+GGG - chr1_4:60549042-60549061 Msa0174770:three_prime_UTR 55.0%
CAGGAATGTCACCTCCGAAG+CGG - chr1_4:60549156-60549175 Msa0174770:three_prime_UTR 55.0%
TGGCCTGTGCAAGAAGCTTC+TGG + chr1_4:60549186-60549205 None:intergenic 55.0%
GCTTCTTGCACAGGCCAATG+AGG - chr1_4:60549189-60549208 Msa0174770:three_prime_UTR 55.0%
CGTCTCTACCATGCTCGTTC+AGG - chr1_4:60549222-60549241 Msa0174770:intron 55.0%
CTGACATGACACGGACGTGT+CGG - chr1_4:60550190-60550209 Msa0174770:intron 55.0%
GCGTCGTACGAGTTTCGTAC+AGG - chr1_4:60550504-60550523 Msa0174770:intron 55.0%
! GCACCAGCATGCTCTTTTCC+AGG + chr1_4:60551048-60551067 None:intergenic 55.0%
GTCTACACTTCCTCTCCTCC+AGG - chr1_4:60551623-60551642 Msa0174770:intron 55.0%
TCAAGCAAACCCTGGAGGAG+AGG + chr1_4:60551636-60551655 None:intergenic 55.0%
AATGTATCGGGGAGTCAGGG+TGG + chr1_4:60551699-60551718 None:intergenic 55.0%
TGTCGCTGACAGCTGAGTTC+AGG - chr1_4:60551829-60551848 Msa0174770:intron 55.0%
GTGGCAATGTGCCATCACCT+TGG - chr1_4:60552951-60552970 Msa0174770:CDS 55.0%
!! GGCAAGTTCTGAGCGCGTAC+AGG - chr1_4:60549041-60549060 Msa0174770:three_prime_UTR 60.0%
!! AGTTCTGAGCGCGTACAGGG+CGG - chr1_4:60549045-60549064 Msa0174770:three_prime_UTR 60.0%
CTTCTGGATCTCCGCTTCGG+AGG + chr1_4:60549170-60549189 None:intergenic 60.0%
GACGAACTCAGCGGCCTCAT+TGG + chr1_4:60549206-60549225 None:intergenic 60.0%
GAGTGGTGCCTGAACGAGCA+TGG + chr1_4:60549233-60549252 None:intergenic 60.0%
AGTGACGCGTGTCGAACACG+AGG - chr1_4:60550535-60550554 Msa0174770:intron 60.0%
!! GGCAAGTTCTGAGCGCGTAC+AGG - chr1_4:60549041-60549060 Msa0174770:three_prime_UTR 60.0%
!! AGTTCTGAGCGCGTACAGGG+CGG - chr1_4:60549045-60549064 Msa0174770:three_prime_UTR 60.0%
CTTCTGGATCTCCGCTTCGG+AGG + chr1_4:60549170-60549189 None:intergenic 60.0%
GACGAACTCAGCGGCCTCAT+TGG + chr1_4:60549206-60549225 None:intergenic 60.0%
GAGTGGTGCCTGAACGAGCA+TGG + chr1_4:60549233-60549252 None:intergenic 60.0%
AGTGACGCGTGTCGAACACG+AGG - chr1_4:60550535-60550554 Msa0174770:intron 60.0%
GCTGAAGGGATCTGCGGCTG+AGG - chr1_4:60549111-60549130 Msa0174770:three_prime_UTR 65.0%
AGCCCTTACTGGGATGGGGG+TGG - chr1_4:60549663-60549682 Msa0174770:intron 65.0%
GCCCTTACTGGGATGGGGGT+GGG - chr1_4:60549664-60549683 Msa0174770:intron 65.0%
CCCCACCCCCATCCCAGTAA+GGG + chr1_4:60549668-60549687 None:intergenic 65.0%
CCCTTACTGGGATGGGGGTG+GGG - chr1_4:60549665-60549684 Msa0174770:intron 65.0%
CCTTACTGGGATGGGGGTGG+GGG - chr1_4:60549666-60549685 Msa0174770:intron 65.0%
GATGGGGGTGGGGGTGGTTA+GGG - chr1_4:60549675-60549694 Msa0174770:intron 65.0%
GGGTGGGGGTGGTTAGGGTT+GGG - chr1_4:60549680-60549699 Msa0174770:intron 65.0%
GCTGAAGGGATCTGCGGCTG+AGG - chr1_4:60549111-60549130 Msa0174770:three_prime_UTR 65.0%
AGCCCTTACTGGGATGGGGG+TGG - chr1_4:60549663-60549682 Msa0174770:intron 65.0%
GCCCTTACTGGGATGGGGGT+GGG - chr1_4:60549664-60549683 Msa0174770:intron 65.0%
CCCCACCCCCATCCCAGTAA+GGG + chr1_4:60549668-60549687 None:intergenic 65.0%
CCCTTACTGGGATGGGGGTG+GGG - chr1_4:60549665-60549684 Msa0174770:intron 65.0%
CCTTACTGGGATGGGGGTGG+GGG - chr1_4:60549666-60549685 Msa0174770:intron 65.0%
GATGGGGGTGGGGGTGGTTA+GGG - chr1_4:60549675-60549694 Msa0174770:intron 65.0%
GGGTGGGGGTGGTTAGGGTT+GGG - chr1_4:60549680-60549699 Msa0174770:intron 65.0%
CCCCCACCCCCATCCCAGTA+AGG + chr1_4:60549669-60549688 None:intergenic 70.0%
TACTGGGATGGGGGTGGGGG+TGG - chr1_4:60549669-60549688 Msa0174770:intron 70.0%
GGATGGGGGTGGGGGTGGTT+AGG - chr1_4:60549674-60549693 Msa0174770:intron 70.0%
GGGGTGGGGGTGGTTAGGGT+TGG - chr1_4:60549679-60549698 Msa0174770:intron 70.0%
CCCCCACCCCCATCCCAGTA+AGG + chr1_4:60549669-60549688 None:intergenic 70.0%
TACTGGGATGGGGGTGGGGG+TGG - chr1_4:60549669-60549688 Msa0174770:intron 70.0%
GGATGGGGGTGGGGGTGGTT+AGG - chr1_4:60549674-60549693 Msa0174770:intron 70.0%
GGGGTGGGGGTGGTTAGGGT+TGG - chr1_4:60549679-60549698 Msa0174770:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 60548975 60553057 60548975 ID=Msa0174770;Name=Msa0174770
chr1_4 mRNA 60548975 60553057 60548975 ID=Msa0174770-mRNA-1;Parent=Msa0174770;Name=Msa0174770-mRNA-1;_AED=0.13;_eAED=0.13;_QI=56|1|1|1|0.5|0.66|3|277|106
chr1_4 exon 60548975 60549235 60548975 ID=Msa0174770-mRNA-1:exon:19210;Parent=Msa0174770-mRNA-1
chr1_4 exon 60550903 60550995 60550903 ID=Msa0174770-mRNA-1:exon:19209;Parent=Msa0174770-mRNA-1
chr1_4 exon 60552758 60553057 60552758 ID=Msa0174770-mRNA-1:exon:19208;Parent=Msa0174770-mRNA-1
chr1_4 five_prime_UTR 60553002 60553057 60553002 ID=Msa0174770-mRNA-1:five_prime_utr;Parent=Msa0174770-mRNA-1
chr1_4 CDS 60552758 60553001 60552758 ID=Msa0174770-mRNA-1:cds;Parent=Msa0174770-mRNA-1
chr1_4 CDS 60550919 60550995 60550919 ID=Msa0174770-mRNA-1:cds;Parent=Msa0174770-mRNA-1
chr1_4 three_prime_UTR 60550903 60550918 60550903 ID=Msa0174770-mRNA-1:three_prime_utr;Parent=Msa0174770-mRNA-1
chr1_4 three_prime_UTR 60548975 60549235 60548975 ID=Msa0174770-mRNA-1:three_prime_utr;Parent=Msa0174770-mRNA-1
Gene Sequence

>Msa0174770

ATGACGAAAGGGCAAGTTCTGAGCGCGTACAGGGCGGTGTTGAAAGCCACTAAGAAATCATTCGTCGGCGATCATCATATGCTGAAGGGATCTGCGGCTGAGGTGCGTAAGCAGTTTGAAGAAAGCAGGAATGTCACCTCCGAAGCGGAGATCCAGAAGCTTCTTGCACAGGCCAATGAGGCCGCTGAGTTCGTCTCTACCATGCTCGTTCAGGCACCACTCAATAATGATGCCGGCAGTTATGTAGTGAAGCCTGGAAAAGAGCATGCTGGTGCAACCCTTGAAATCCCATCAGAAGAAATTATTCGTAAGTCAGGATAA

Protein sequence

>Msa0174770

MTKGQVLSAYRAVLKATKKSFVGDHHMLKGSAAEVRKQFEESRNVTSEAEIQKLLAQANEAAEFVSTMLVQAPLNNDAGSYVVKPGKEHAGATLEIPSEEIIRKSG*