AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0327150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327150 MtrunA17_Chr2g0296941 95.362 345 15 1 1 344 1 345 0.0 655
Msa0327150 MtrunA17_Chr1g0187131 32.881 295 176 5 55 346 67 342 6.37e-36 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327150 AT4G20070.2 71.704 311 88 0 37 347 84 394 1.98e-166 471
Msa0327150 AT4G20070.1 72.078 308 86 0 37 344 84 391 1.96e-165 472
Msa0327150 AT5G43600.1 33.893 298 165 7 55 343 72 346 1.13e-34 132

Find 140 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGCAACCTTATCATTTC+TGG 0.089860 2_4:+38678419 Msa0327150:three_prime_UTR
ACATAACCCCAAACAGATTT+TGG 0.153224 2_4:-38676627 None:intergenic
AAATTTAATTGTTACAAAAT+TGG 0.209089 2_4:-38678612 None:intergenic
TATTTGTAGCATGTAATTAT+AGG 0.239260 2_4:+38678485 Msa0327150:three_prime_UTR
CGATAAATCTTATTCGAAAA+TGG 0.247519 2_4:+38675620 Msa0327150:CDS
TTTCCTTGATACCTCTTATC+AGG 0.279914 2_4:-38676461 None:intergenic
TTCCCACTTGGTGTCGTTAA+AGG 0.289921 2_4:+38676796 Msa0327150:CDS
CTTATGCTGCAAGCTGTAAT+AGG 0.294960 2_4:+38678777 Msa0327150:three_prime_UTR
GTATGATCCAAAATCTGTTT+GGG 0.312638 2_4:+38676620 Msa0327150:CDS
TTTGTGTAGGTCACGGTTAA+AGG 0.312855 2_4:+38676927 Msa0327150:intron
TTCAGCTGTGAACTTAGTTC+TGG 0.333589 2_4:-38678113 None:intergenic
TGCTGAACAAATTGTACTTA+TGG 0.340654 2_4:+38677010 Msa0327150:CDS
TTTATCGCTGTTGTGGTTGC+AGG 0.349400 2_4:-38675604 None:intergenic
AGTATGATCCAAAATCTGTT+TGG 0.358696 2_4:+38676619 Msa0327150:CDS
GTTGATGCTGGTAAATTTGA+TGG 0.363766 2_4:+38675960 Msa0327150:CDS
AATTTGAGAACACGGCTATA+AGG 0.377022 2_4:-38678565 None:intergenic
AATTCATCGCTTGCCTGGCC+TGG 0.383667 2_4:-38677170 None:intergenic
ACCATACCTTGTGTTCAATA+AGG 0.385103 2_4:-38677397 None:intergenic
TTCATATATACCTTATTGTT+CGG 0.386389 2_4:+38673888 Msa0327150:five_prime_UTR
TTTCAGTTGGGTGGACCAAA+TGG 0.392422 2_4:+38675731 Msa0327150:intron
CTCTGCAATATCTGCATTGA+AGG 0.404600 2_4:+38675998 Msa0327150:CDS
AAATGTAAGCATGAATAAAC+TGG 0.406955 2_4:-38678730 None:intergenic
GACCATGTACATTTCCCATT+TGG 0.413557 2_4:-38675746 None:intergenic
TTGGAAATTCATCGCTTGCC+TGG 0.418673 2_4:-38677175 None:intergenic
TGCAAATGCAGAAGCTTTGT+TGG 0.419735 2_4:+38675785 Msa0327150:CDS
AGGAACAGAACCGAACAATA+AGG 0.421071 2_4:-38673898 None:intergenic
ATGGAATGCTGCAAAATCTA+AGG 0.421423 2_4:+38676033 Msa0327150:CDS
TCGTAAGAAAGGTACTCTTC+AGG 0.428537 2_4:-38677050 None:intergenic
CTTGACACACTAACCTCAAC+AGG 0.432855 2_4:-38676059 None:intergenic
AGTTCACTTGTTTGTACTGT+TGG 0.437924 2_4:+38677110 Msa0327150:CDS
GAACAAGTTGGTTTCCCACT+TGG 0.439155 2_4:+38676784 Msa0327150:CDS
TTGGTTGGCCTCCTCTTGAT+AGG 0.440619 2_4:-38678593 None:intergenic
ATACGAGCAATTGATGATCT+TGG 0.445837 2_4:+38677305 Msa0327150:three_prime_UTR
GGTGTCGTTAAAGGCATAGC+TGG 0.445854 2_4:+38676805 Msa0327150:CDS
CTAGGCAGTGGGGCTATAGC+TGG 0.446972 2_4:+38676410 Msa0327150:CDS
AGTGCTAGTAATGTCATTCC+AGG 0.447467 2_4:+38677152 Msa0327150:CDS
ATAATGTGATGATTGGTTGC+AGG 0.450358 2_4:+38677265 Msa0327150:three_prime_UTR
AGATTTCAAACTACTTTCCT+AGG 0.450999 2_4:+38676392 Msa0327150:CDS
CATGGACATTGGAACAGTTC+CGG 0.452698 2_4:-38676964 None:intergenic
CACAGAACCACTCAGTTTGT+AGG 0.459294 2_4:+38673788 Msa0327150:five_prime_UTR
GTGGCAAGGCTTGTTGAGCT+TGG 0.460871 2_4:+38675260 Msa0327150:CDS
AAATGGTTAGGAATTGAAAC+TGG 0.465677 2_4:+38675185 Msa0327150:intron
ATGTGCTAAACGATGATGTA+TGG 0.472847 2_4:+38678388 Msa0327150:three_prime_UTR
AAACTACTTTCCTAGGCAGT+GGG 0.473932 2_4:+38676399 Msa0327150:CDS
AACGATGATGTATGGGCGGC+AGG 0.475444 2_4:+38678396 Msa0327150:three_prime_UTR
TTTGATCATATGTATGATCA+TGG 0.480276 2_4:-38678666 None:intergenic
CCAACATTAATGAGTGGAGC+AGG 0.482594 2_4:+38678191 Msa0327150:three_prime_UTR
TGTGATGATAATGTGATGAT+TGG 0.483174 2_4:+38677258 Msa0327150:three_prime_UTR
TCATCAAATTACAAACAGTC+AGG 0.484611 2_4:-38673714 None:intergenic
AATGCAGAAGCTTTGTTGGT+TGG 0.490096 2_4:+38675789 Msa0327150:CDS
CAGCTATAGCCCCACTGCCT+AGG 0.492749 2_4:-38676409 None:intergenic
CATTGGAGATACCTGATAAG+AGG 0.498225 2_4:+38676450 Msa0327150:CDS
TTAATTGTTACAAAATTGGT+TGG 0.498310 2_4:-38678608 None:intergenic
CAAACTACTTTCCTAGGCAG+TGG 0.498481 2_4:+38676398 Msa0327150:CDS
GTCCATGCGTCAAGATCCTA+TGG 0.502369 2_4:+38676980 Msa0327150:CDS
TTCAGTTGGGTGGACCAAAT+GGG 0.503176 2_4:+38675732 Msa0327150:intron
ACAGAACCACTCAGTTTGTA+GGG 0.512265 2_4:+38673789 Msa0327150:five_prime_UTR
AATAAGATTTATCGCTGTTG+TGG 0.514886 2_4:-38675611 None:intergenic
TAGGACACTGTTGTTGATGC+TGG 0.515212 2_4:+38675948 Msa0327150:intron
GCTGCAGCTTCACATTGAGC+AGG 0.516545 2_4:+38676750 Msa0327150:intron
AATGTACATGGTCGAGTTGA+GGG 0.516730 2_4:+38675756 Msa0327150:CDS
GTACTTGATAAATTGAAGAA+AGG 0.516995 2_4:+38678698 Msa0327150:three_prime_UTR
GGTATCTCCAATGTTGTAGC+AGG 0.519067 2_4:-38676440 None:intergenic
TACCTTGTGTTCAATAAGGC+AGG 0.520522 2_4:-38677393 None:intergenic
TGCAACGACCATCGTAAGAA+AGG 0.520984 2_4:-38677061 None:intergenic
AAGGAGTTGATAGAATATAC+AGG 0.522584 2_4:-38674066 None:intergenic
GGTAAATTTGATGGAGCACT+AGG 0.522882 2_4:+38675969 Msa0327150:CDS
ACAGCATGTGGTGGAGGTGG+CGG 0.525377 2_4:-38673857 None:intergenic
GGATCTTGACGCATGGACAT+TGG 0.526811 2_4:-38676975 None:intergenic
TTGAAGGTTATGAATGTCAA+TGG 0.529056 2_4:+38676014 Msa0327150:CDS
TGTTCACCTCAGCATGATGC+AGG 0.530008 2_4:+38678074 Msa0327150:intron
AAATCTTATTCGAAAATGGA+TGG 0.534286 2_4:+38675624 Msa0327150:CDS
AGCTGGGCAGACAAGATTGA+AGG 0.535514 2_4:+38676822 Msa0327150:CDS
ACATATCTGATAAATTCGAT+TGG 0.541292 2_4:-38677354 None:intergenic
GGTCCTGTGCTTGAACAAGT+TGG 0.545766 2_4:+38676772 Msa0327150:CDS
TAGTAATGTCATTCCAGGCC+AGG 0.550343 2_4:+38677157 Msa0327150:CDS
AAATCTAAGGCGTCCTGTTG+AGG 0.552501 2_4:+38676046 Msa0327150:CDS
CATGCACGAGTGAGAAATGC+TGG 0.553352 2_4:-38673813 None:intergenic
CGAAAATGGATGGAAGATGC+TGG 0.561977 2_4:+38675634 Msa0327150:CDS
GACCAAATGGGAAATGTACA+TGG 0.563951 2_4:+38675744 Msa0327150:CDS
AGAACAGCATGTGGTGGAGG+TGG 0.565480 2_4:-38673860 None:intergenic
TCGTTTAGCACATCCTCTTG+TGG 0.566941 2_4:-38678378 None:intergenic
CTGCAGCTTCACATTGAGCA+GGG 0.575143 2_4:+38676751 Msa0327150:intron
TTCCTGCCTTATTGAACACA+AGG 0.575456 2_4:+38677391 Msa0327150:three_prime_UTR
CAAATTATTCTCCTATCAAG+AGG 0.575584 2_4:+38678582 Msa0327150:three_prime_UTR
ATCTGTTTGGGGTTATGTCG+AGG 0.575812 2_4:+38676632 Msa0327150:CDS
AAAGGCTCACAAGGTCATGC+CGG 0.576546 2_4:+38676945 Msa0327150:CDS
CAGCTTATTCTGCACTCAAG+AGG 0.578224 2_4:+38678141 Msa0327150:three_prime_UTR
TGTTCAGCAGCAGCCACCAT+AGG 0.579164 2_4:-38676996 None:intergenic
GAAAGAACAGCATGTGGTGG+AGG 0.581921 2_4:-38673863 None:intergenic
TGGAGCAGGGCATGATGCCA+TGG 0.582009 2_4:+38678205 Msa0327150:three_prime_UTR
AAAGAGAGTTAGCGAAAACT+CGG 0.583465 2_4:+38673931 Msa0327150:five_prime_UTR
GCCTCATCTCTTAGAATCTG+CGG 0.585167 2_4:-38675236 None:intergenic
AAACCAACTTGTTCAAGCAC+AGG 0.588436 2_4:-38676775 None:intergenic
ATCAATTGCTCGTATATCCA+CGG 0.588827 2_4:-38677297 None:intergenic
CCTGCTCCACTCATTAATGT+TGG 0.589437 2_4:-38678191 None:intergenic
GGAATGACATTACTAGCACT+TGG 0.589744 2_4:-38677149 None:intergenic
TTCTGCACTCAAGAGGATGG+AGG 0.594618 2_4:+38678148 Msa0327150:three_prime_UTR
AGAGAACTCGATAGAAGCTG+TGG 0.605459 2_4:+38676575 Msa0327150:CDS
GGCAATGTCTCACTTAACAA+AGG 0.607328 2_4:+38678226 Msa0327150:three_prime_UTR
ACTCTTCAGGATGTTTGCAG+AGG 0.608033 2_4:-38677037 None:intergenic
GAAAACAAAGAAGCACATGA+AGG 0.610863 2_4:-38674085 None:intergenic
TCCGCAGATTCTAAGAGATG+AGG 0.611127 2_4:+38675235 Msa0327150:CDS
AAGGCTTGTTGAGCTTGGAA+AGG 0.612966 2_4:+38675265 Msa0327150:CDS
TTATTCTGCACTCAAGAGGA+TGG 0.613099 2_4:+38678145 Msa0327150:three_prime_UTR
AAATGTACATGGTCGAGTTG+AGG 0.615458 2_4:+38675755 Msa0327150:CDS
GTGTCGTTAAAGGCATAGCT+GGG 0.619543 2_4:+38676806 Msa0327150:CDS
TCTGCACTCAAGAGGATGGA+GGG 0.619874 2_4:+38678149 Msa0327150:three_prime_UTR
ATGCTGTTTGTGCGATGTCG+CGG 0.620832 2_4:+38678339 Msa0327150:three_prime_UTR
GAACTCGATAGAAGCTGTGG+AGG 0.623059 2_4:+38676578 Msa0327150:CDS
ATGCCTTTAACGACACCAAG+TGG 0.623755 2_4:-38676799 None:intergenic
TTGATCTGGTGATCTTCAAG+TGG 0.624881 2_4:+38677205 Msa0327150:exon
CATAAGTCACTCTCCACAAG+AGG 0.625552 2_4:+38678365 Msa0327150:three_prime_UTR
CACCATAGGATCTTGACGCA+TGG 0.629370 2_4:-38676982 None:intergenic
GATTCTAAGAGATGAGGCAG+TGG 0.632621 2_4:+38675241 Msa0327150:CDS
GTCACGGTTAAAGGCTCACA+AGG 0.633455 2_4:+38676936 Msa0327150:CDS
ATGCTAGTGGCTATCTAGAG+AGG 0.634407 2_4:+38675569 Msa0327150:CDS
AGGAGAATAATTTGAGAACA+CGG 0.640264 2_4:-38678573 None:intergenic
TGTGCTAAACGATGATGTAT+GGG 0.641420 2_4:+38678389 Msa0327150:three_prime_UTR
GAAGTACCAACATTAATGAG+TGG 0.642265 2_4:+38678185 Msa0327150:three_prime_UTR
TTTGTTGGTTGGATCTCACA+TGG 0.644939 2_4:+38675800 Msa0327150:CDS
TAAGAGATGAGGCAGTGGCA+AGG 0.651166 2_4:+38675246 Msa0327150:CDS
GTTGCAGGTTACATATACCG+TGG 0.655260 2_4:+38677280 Msa0327150:three_prime_UTR
TATGATCCAAAATCTGTTTG+GGG 0.656816 2_4:+38676621 Msa0327150:CDS
TGTTAAGTGAGACATTGCCA+TGG 0.658188 2_4:-38678222 None:intergenic
CATCAAATTACAAACAGTCA+GGG 0.659874 2_4:-38673713 None:intergenic
CAACATTAATGAGTGGAGCA+GGG 0.661114 2_4:+38678192 Msa0327150:three_prime_UTR
ATTATTCTCCTATCAAGAGG+AGG 0.665582 2_4:+38678585 Msa0327150:three_prime_UTR
TGCCTTTAACGACACCAAGT+GGG 0.666563 2_4:-38676798 None:intergenic
GAAGAGTACCTTTCTTACGA+TGG 0.667691 2_4:+38677053 Msa0327150:CDS
CTGTTTGTGCGATGTCGCGG+AGG 0.676245 2_4:+38678342 Msa0327150:three_prime_UTR
GAACAGGTTAGTGATGCTAG+TGG 0.681751 2_4:+38675556 Msa0327150:intron
AACTACTTTCCTAGGCAGTG+GGG 0.682431 2_4:+38676400 Msa0327150:CDS
AATTGATGATCTTGGACGTG+AGG 0.685467 2_4:+38677313 Msa0327150:three_prime_UTR
ATTGAAAGAACAGCATGTGG+TGG 0.691465 2_4:-38673866 None:intergenic
CTGTTGGTGAAATATCAACA+TGG 0.708340 2_4:+38677126 Msa0327150:CDS
TGAATTGAAAGAACAGCATG+TGG 0.716001 2_4:-38673869 None:intergenic
CATGCGTCAAGATCCTATGG+TGG 0.726797 2_4:+38676983 Msa0327150:CDS
GCTGGACCCTACAAACTGAG+TGG 0.730023 2_4:-38673795 None:intergenic
GCTAAACGATGATGTATGGG+CGG 0.742622 2_4:+38678392 Msa0327150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGTTATTTTTGATTTA+TGG + chr2_4:38673690-38673709 Msa0327150:five_prime_UTR 10.0%
!! TTATAAAATTCTTAGAATTT+AGG + chr2_4:38677516-38677535 Msa0327150:intron 10.0%
!! TATAAAATTCTTAGAATTTA+GGG + chr2_4:38677517-38677536 Msa0327150:intron 10.0%
!! TATAAATACTTATAGTAAAT+AGG + chr2_4:38677930-38677949 Msa0327150:intron 10.0%
!! ATAATCAAATGTTAATATAT+TGG + chr2_4:38678269-38678288 Msa0327150:intron 10.0%
!! AAATTTAATTGTTACAAAAT+TGG - chr2_4:38678615-38678634 None:intergenic 10.0%
!! TAAAAATAACATCTGAATAA+AGG + chr2_4:38674158-38674177 Msa0327150:intron 15.0%
!!! TTTTTTTTTGTTTTGATTCT+TGG + chr2_4:38674237-38674256 Msa0327150:intron 15.0%
!!! TTGCAATATTTTTAATGATA+TGG + chr2_4:38676099-38676118 Msa0327150:intron 15.0%
!!! TTTATTTATAAACGTTTTTC+AGG + chr2_4:38676526-38676545 Msa0327150:intron 15.0%
!! TTCATATATACCTTATTGTT+CGG + chr2_4:38673888-38673907 Msa0327150:five_prime_UTR 20.0%
!! TAAGAAAATTGTATGTATGT+TGG + chr2_4:38675064-38675083 Msa0327150:intron 20.0%
!!! TTTTAACTACAGTATATTGA+CGG - chr2_4:38675330-38675349 None:intergenic 20.0%
!!! ATGAATATGTTATTTTCAGT+TGG + chr2_4:38675718-38675737 Msa0327150:intron 20.0%
!!! TGAATATGTTATTTTCAGTT+GGG + chr2_4:38675719-38675738 Msa0327150:intron 20.0%
!!! GTTAATTGTAAATTTTAGTG+AGG + chr2_4:38675882-38675901 Msa0327150:intron 20.0%
!! AAACAGCATATCATTAATAT+CGG - chr2_4:38676909-38676928 None:intergenic 20.0%
!! TTATGCTTAAAGAATATGTT+TGG - chr2_4:38677437-38677456 None:intergenic 20.0%
!!! AGTAAATAGGTATTTTTTGT+TGG + chr2_4:38677943-38677962 Msa0327150:intron 20.0%
!! TATTTGTAGCATGTAATTAT+AGG + chr2_4:38678485-38678504 Msa0327150:three_prime_UTR 20.0%
!! TTAATTGTTACAAAATTGGT+TGG - chr2_4:38678611-38678630 None:intergenic 20.0%
! ACAAAGAAACATGAAAGAAA+AGG - chr2_4:38674121-38674140 None:intergenic 25.0%
!! AATGTTAAGATACCCTTTTA+AGG + chr2_4:38674272-38674291 Msa0327150:intron 25.0%
!! TTTTGCTAACATCATAGAAA+AGG - chr2_4:38674307-38674326 None:intergenic 25.0%
! ATGTTTGAGAACAAATGAAA+AGG + chr2_4:38674422-38674441 Msa0327150:intron 25.0%
! TGTTTGAGAACAAATGAAAA+GGG + chr2_4:38674423-38674442 Msa0327150:intron 25.0%
!! AGTTACTAGTTTCTGAAAAT+TGG + chr2_4:38675018-38675037 Msa0327150:intron 25.0%
!!! TATGTTGGCTTAATTTAACT+TGG + chr2_4:38675079-38675098 Msa0327150:intron 25.0%
!!! CTTAATTTAACTTGGAAGTA+GGG + chr2_4:38675087-38675106 Msa0327150:intron 25.0%
!!! TTAATTTAACTTGGAAGTAG+GGG + chr2_4:38675088-38675107 Msa0327150:intron 25.0%
! AAACTGGAGATTTAGAAAAA+CGG + chr2_4:38675201-38675220 Msa0327150:CDS 25.0%
! CATTGAGTAAATATCCAAAT+TGG + chr2_4:38675353-38675372 Msa0327150:intron 25.0%
! TACAATTTCAAGAACCAATT+TGG - chr2_4:38675370-38675389 None:intergenic 25.0%
! TACATTATCGATGATTTGAA+AGG + chr2_4:38675410-38675429 Msa0327150:intron 25.0%
! CGATAAATCTTATTCGAAAA+TGG + chr2_4:38675620-38675639 Msa0327150:CDS 25.0%
! AAATCTTATTCGAAAATGGA+TGG + chr2_4:38675624-38675643 Msa0327150:CDS 25.0%
! TTAGAGTTAAAGAAGTTAGA+AGG - chr2_4:38675674-38675693 None:intergenic 25.0%
! GTTTCATTCAAAGTTAATTG+AGG - chr2_4:38675845-38675864 None:intergenic 25.0%
! TACAATTAACTGTCAAGAAA+TGG - chr2_4:38675872-38675891 None:intergenic 25.0%
!!! GATGGATACTTATTTTTGTT+AGG + chr2_4:38675929-38675948 Msa0327150:intron 25.0%
! ATGATTCATTGAAATGAATC+GGG - chr2_4:38676270-38676289 None:intergenic 25.0%
! GATGATTCATTGAAATGAAT+CGG - chr2_4:38676271-38676290 None:intergenic 25.0%
! ATTTCAATGAATCATCATCT+TGG + chr2_4:38676275-38676294 Msa0327150:intron 25.0%
! ACATATCTGATAAATTCGAT+TGG - chr2_4:38677357-38677376 None:intergenic 25.0%
! GAAATGTGTTTATAAGTGAT+GGG - chr2_4:38677584-38677603 None:intergenic 25.0%
! AAATGTGTTTAGATAAGTAG+TGG - chr2_4:38677773-38677792 None:intergenic 25.0%
! TACTTATCTAAACACATTTC+AGG + chr2_4:38677774-38677793 Msa0327150:intron 25.0%
! ACTCTTAATAAAAACGAATG+TGG + chr2_4:38677818-38677837 Msa0327150:intron 25.0%
!! TGTTTTATCCTTTTAGATTG+AGG - chr2_4:38677867-38677886 None:intergenic 25.0%
!!! AAATAGGTATTTTTTGTTGG+TGG + chr2_4:38677946-38677965 Msa0327150:intron 25.0%
!!! AATAGGTATTTTTTGTTGGT+GGG + chr2_4:38677947-38677966 Msa0327150:intron 25.0%
!!! TAGTTTTTCAGTTTGTTTTC+TGG + chr2_4:38678023-38678042 Msa0327150:intron 25.0%
! TTAGAATATGACAATGAATG+AGG + chr2_4:38678300-38678319 Msa0327150:intron 25.0%
!! TAGATTTTCCAGAAATGATA+AGG - chr2_4:38678430-38678449 None:intergenic 25.0%
! TTTGATCATATGTATGATCA+TGG - chr2_4:38678669-38678688 None:intergenic 25.0%
! GTACTTGATAAATTGAAGAA+AGG + chr2_4:38678698-38678717 Msa0327150:three_prime_UTR 25.0%
! AAATGTAAGCATGAATAAAC+TGG - chr2_4:38678733-38678752 None:intergenic 25.0%
CATCAAATTACAAACAGTCA+GGG - chr2_4:38673716-38673735 None:intergenic 30.0%
TCATCAAATTACAAACAGTC+AGG - chr2_4:38673717-38673736 None:intergenic 30.0%
! AACTCTCTTTTCAATCTCAA+AGG - chr2_4:38673921-38673940 None:intergenic 30.0%
!! AAGGAGTTGATAGAATATAC+AGG - chr2_4:38674069-38674088 None:intergenic 30.0%
TTGATTCTTGGAATCTTTGA+TGG + chr2_4:38674249-38674268 Msa0327150:intron 30.0%
AGGAATCTGAATCCTTAAAA+GGG - chr2_4:38674287-38674306 None:intergenic 30.0%
AAGGAATCTGAATCCTTAAA+AGG - chr2_4:38674288-38674307 None:intergenic 30.0%
ATATAATCACATGTGTCATC+TGG - chr2_4:38674717-38674736 None:intergenic 30.0%
TGTTGAATATTAGTTCGACT+TGG + chr2_4:38674834-38674853 Msa0327150:intron 30.0%
ACCTTGGTTCAAATTGTATT+TGG + chr2_4:38674960-38674979 Msa0327150:intron 30.0%
TCCAAATACAATTTGAACCA+AGG - chr2_4:38674964-38674983 None:intergenic 30.0%
!! GCTTAATTTAACTTGGAAGT+AGG + chr2_4:38675086-38675105 Msa0327150:intron 30.0%
! TTCAATTCCTAACCATTTTC+AGG - chr2_4:38675183-38675202 None:intergenic 30.0%
AAATGGTTAGGAATTGAAAC+TGG + chr2_4:38675185-38675204 Msa0327150:intron 30.0%
AACTGGAGATTTAGAAAAAC+GGG + chr2_4:38675202-38675221 Msa0327150:CDS 30.0%
AAAGATGAGTTCTTGAAGTT+AGG - chr2_4:38675293-38675312 None:intergenic 30.0%
AATAAGATTTATCGCTGTTG+TGG - chr2_4:38675614-38675633 None:intergenic 30.0%
!!! ATATGTTATTTTCAGTTGGG+TGG + chr2_4:38675722-38675741 Msa0327150:intron 30.0%
TTGAAGGTTATGAATGTCAA+TGG + chr2_4:38676014-38676033 Msa0327150:CDS 30.0%
CTCTTGTATGTGTATTCATT+TGG + chr2_4:38676204-38676223 Msa0327150:intron 30.0%
!!! GAATGATGCCACTTTTTTAT+TGG + chr2_4:38676306-38676325 Msa0327150:intron 30.0%
AGATGACACCAATAAAAAAG+TGG - chr2_4:38676317-38676336 None:intergenic 30.0%
! ATTGCATTTTGTGATGAAGA+GGG + chr2_4:38676365-38676384 Msa0327150:CDS 30.0%
AGATTTCAAACTACTTTCCT+AGG + chr2_4:38676392-38676411 Msa0327150:CDS 30.0%
! TATTTTACCTGCTACAACAT+TGG + chr2_4:38676433-38676452 Msa0327150:CDS 30.0%
!!! AACGTTTTTCAGGAATGTAA+CGG + chr2_4:38676536-38676555 Msa0327150:intron 30.0%
AGTATGATCCAAAATCTGTT+TGG + chr2_4:38676619-38676638 Msa0327150:CDS 30.0%
GTATGATCCAAAATCTGTTT+GGG + chr2_4:38676620-38676639 Msa0327150:CDS 30.0%
TATGATCCAAAATCTGTTTG+GGG + chr2_4:38676621-38676640 Msa0327150:CDS 30.0%
ACTATAAACGACTAATGCAA+AGG - chr2_4:38676667-38676686 None:intergenic 30.0%
TTTGCATTAGTCGTTTATAG+TGG + chr2_4:38676666-38676685 Msa0327150:intron 30.0%
!!! TCGGATTTCAGTTCTTTTTT+CGG - chr2_4:38676890-38676909 None:intergenic 30.0%
!!! AATGATATGCTGTTTTGTGT+AGG + chr2_4:38676914-38676933 Msa0327150:intron 30.0%
TGCTGAACAAATTGTACTTA+TGG + chr2_4:38677010-38677029 Msa0327150:CDS 30.0%
! TGTGATGATAATGTGATGAT+TGG + chr2_4:38677258-38677277 Msa0327150:three_prime_UTR 30.0%
GCTTAAAGAATATGTTTGGT+CGG - chr2_4:38677433-38677452 None:intergenic 30.0%
ATACCTTATCCATACAAAAC+CGG + chr2_4:38677541-38677560 Msa0327150:intron 30.0%
GGAAATGTGTTTATAAGTGA+TGG - chr2_4:38677585-38677604 None:intergenic 30.0%
! GTTTATCCAAGACACATTTT+AGG - chr2_4:38677679-38677698 None:intergenic 30.0%
GTCTCAAATTTGATGAGATA+AGG - chr2_4:38677800-38677819 None:intergenic 30.0%
TTTAGCAACCTTATCATTTC+TGG + chr2_4:38678419-38678438 Msa0327150:three_prime_UTR 30.0%
AGGAGAATAATTTGAGAACA+CGG - chr2_4:38678576-38678595 None:intergenic 30.0%
CAAATTATTCTCCTATCAAG+AGG + chr2_4:38678582-38678601 Msa0327150:three_prime_UTR 30.0%
TGAATTGAAAGAACAGCATG+TGG - chr2_4:38673872-38673891 None:intergenic 35.0%
AAAGAGAGTTAGCGAAAACT+CGG + chr2_4:38673931-38673950 Msa0327150:five_prime_UTR 35.0%
! GAAAACAAAGAAGCACATGA+AGG - chr2_4:38674088-38674107 None:intergenic 35.0%
!!! TCATGTGCTTCTTTGTTTTC+TGG + chr2_4:38674088-38674107 Msa0327150:CDS 35.0%
AGTCAAAGCAAGAACAACAA+TGG - chr2_4:38674479-38674498 None:intergenic 35.0%
! TCTTGCTTTGACTCTTTTTC+TGG + chr2_4:38674486-38674505 Msa0327150:intron 35.0%
!!! GTTGTGATGTGTGTTTTTTG+TGG + chr2_4:38674628-38674647 Msa0327150:intron 35.0%
ACTTGGATGTCTTCAAATCA+TGG + chr2_4:38674851-38674870 Msa0327150:intron 35.0%
! GTTTCTGAAAATTGGCATAC+AGG + chr2_4:38675026-38675045 Msa0327150:intron 35.0%
! AAATTGGCATACAGGTTTTG+TGG + chr2_4:38675034-38675053 Msa0327150:intron 35.0%
GCTAAATGCTTACCTGAAAA+TGG + chr2_4:38675168-38675187 Msa0327150:intron 35.0%
ATGCTTACCTGAAAATGGTT+AGG + chr2_4:38675173-38675192 Msa0327150:intron 35.0%
ACTGGAGATTTAGAAAAACG+GGG + chr2_4:38675203-38675222 Msa0327150:CDS 35.0%
GCATAAAATGTGAATGTTGC+TGG + chr2_4:38675494-38675513 Msa0327150:intron 35.0%
CTTAGTGTTAATGCTGTTGT+TGG + chr2_4:38675531-38675550 Msa0327150:intron 35.0%
! TTTCATGTCACTGACTATGA+TGG + chr2_4:38675911-38675930 Msa0327150:intron 35.0%
GTTGATGCTGGTAAATTTGA+TGG + chr2_4:38675960-38675979 Msa0327150:CDS 35.0%
ATGGAATGCTGCAAAATCTA+AGG + chr2_4:38676033-38676052 Msa0327150:CDS 35.0%
TAATGATATGGTCTGATGCA+CGG + chr2_4:38676111-38676130 Msa0327150:intron 35.0%
AATCATCATCTTGGAAATGC+TGG + chr2_4:38676284-38676303 Msa0327150:intron 35.0%
TCATGTGATCTAATCTTTGC+AGG + chr2_4:38676340-38676359 Msa0327150:intron 35.0%
! GATTGCATTTTGTGATGAAG+AGG + chr2_4:38676364-38676383 Msa0327150:CDS 35.0%
!! ATACCTGATAAGAGGTATCA+AGG + chr2_4:38676458-38676477 Msa0327150:intron 35.0%
TTTCCTTGATACCTCTTATC+AGG - chr2_4:38676464-38676483 None:intergenic 35.0%
! ACATAACCCCAAACAGATTT+TGG - chr2_4:38676630-38676649 None:intergenic 35.0%
TAGTCGTTTATAGTGGTGTT+TGG + chr2_4:38676673-38676692 Msa0327150:intron 35.0%
AGTTCACTTGTTTGTACTGT+TGG + chr2_4:38677110-38677129 Msa0327150:CDS 35.0%
! CTGTTGGTGAAATATCAACA+TGG + chr2_4:38677126-38677145 Msa0327150:CDS 35.0%
TTTCCAAAAAGCTGTTGATC+TGG + chr2_4:38677191-38677210 Msa0327150:exon 35.0%
! ATAATGTGATGATTGGTTGC+AGG + chr2_4:38677265-38677284 Msa0327150:three_prime_UTR 35.0%
ATCAATTGCTCGTATATCCA+CGG - chr2_4:38677300-38677319 None:intergenic 35.0%
! ATACGAGCAATTGATGATCT+TGG + chr2_4:38677305-38677324 Msa0327150:three_prime_UTR 35.0%
ACCATACCTTGTGTTCAATA+AGG - chr2_4:38677400-38677419 None:intergenic 35.0%
TGATGTCTTTCTAAGTGAGA+GGG + chr2_4:38677471-38677490 Msa0327150:intron 35.0%
!! AAACCGGTTTTGTATGGATA+AGG - chr2_4:38677547-38677566 None:intergenic 35.0%
GTCTCACGTAGTATGAAATA+GGG - chr2_4:38677611-38677630 None:intergenic 35.0%
AGTCTCACGTAGTATGAAAT+AGG - chr2_4:38677612-38677631 None:intergenic 35.0%
!! CCAGTTTTGTAGAGATTAGT+TGG - chr2_4:38677731-38677750 None:intergenic 35.0%
CCAACTAATCTCTACAAAAC+TGG + chr2_4:38677728-38677747 Msa0327150:intron 35.0%
! ACAAGATCTAAAACAAACCC+AGG - chr2_4:38678002-38678021 None:intergenic 35.0%
GGTGAACACAGAAAAATCAT+TGG - chr2_4:38678062-38678081 None:intergenic 35.0%
! GAAGTACCAACATTAATGAG+TGG + chr2_4:38678185-38678204 Msa0327150:three_prime_UTR 35.0%
CAATGAATGAGGATTTGAAC+AGG + chr2_4:38678311-38678330 Msa0327150:intron 35.0%
ATGTGCTAAACGATGATGTA+TGG + chr2_4:38678388-38678407 Msa0327150:three_prime_UTR 35.0%
TGTGCTAAACGATGATGTAT+GGG + chr2_4:38678389-38678408 Msa0327150:three_prime_UTR 35.0%
AATTTGAGAACACGGCTATA+AGG - chr2_4:38678568-38678587 None:intergenic 35.0%
ATTATTCTCCTATCAAGAGG+AGG + chr2_4:38678585-38678604 Msa0327150:three_prime_UTR 35.0%
ACAGAACCACTCAGTTTGTA+GGG + chr2_4:38673789-38673808 Msa0327150:five_prime_UTR 40.0%
ATTGAAAGAACAGCATGTGG+TGG - chr2_4:38673869-38673888 None:intergenic 40.0%
AGGAACAGAACCGAACAATA+AGG - chr2_4:38673901-38673920 None:intergenic 40.0%
ATTTCGATGCAACAGAAACC+TGG + chr2_4:38674354-38674373 Msa0327150:intron 40.0%
AAACATCAAACAAGCTGAGC+TGG - chr2_4:38674408-38674427 None:intergenic 40.0%
!! TTGTTAGCTCTGTAGCACTA+AGG + chr2_4:38674665-38674684 Msa0327150:intron 40.0%
GGCTTCATGGATGTTTATGA+TGG + chr2_4:38674805-38674824 Msa0327150:intron 40.0%
! CGTACGGCAATTTAAAACCT+TGG + chr2_4:38674944-38674963 Msa0327150:intron 40.0%
TCACTCTCTTATTGCATTGC+TGG - chr2_4:38674996-38675015 None:intergenic 40.0%
AATGCTGTTGTTGGATGAAC+AGG + chr2_4:38675540-38675559 Msa0327150:intron 40.0%
GACCAAATGGGAAATGTACA+TGG + chr2_4:38675744-38675763 Msa0327150:CDS 40.0%
GACCATGTACATTTCCCATT+TGG - chr2_4:38675749-38675768 None:intergenic 40.0%
! AAATGTACATGGTCGAGTTG+AGG + chr2_4:38675755-38675774 Msa0327150:CDS 40.0%
!! AATGTACATGGTCGAGTTGA+GGG + chr2_4:38675756-38675775 Msa0327150:CDS 40.0%
! TGCAAATGCAGAAGCTTTGT+TGG + chr2_4:38675785-38675804 Msa0327150:CDS 40.0%
!! AATGCAGAAGCTTTGTTGGT+TGG + chr2_4:38675789-38675808 Msa0327150:CDS 40.0%
! TTTGTTGGTTGGATCTCACA+TGG + chr2_4:38675800-38675819 Msa0327150:CDS 40.0%
! GGTAAATTTGATGGAGCACT+AGG + chr2_4:38675969-38675988 Msa0327150:CDS 40.0%
CTCTGCAATATCTGCATTGA+AGG + chr2_4:38675998-38676017 Msa0327150:CDS 40.0%
TGGTGAATTGGGATTCAAGA+TGG - chr2_4:38676239-38676258 None:intergenic 40.0%
AAATGAATCGGGATTCAGCA+TGG - chr2_4:38676259-38676278 None:intergenic 40.0%
AAACTACTTTCCTAGGCAGT+GGG + chr2_4:38676399-38676418 Msa0327150:CDS 40.0%
CATTGGAGATACCTGATAAG+AGG + chr2_4:38676450-38676469 Msa0327150:CDS 40.0%
AGCTGCAGCACATAAGAAAT+GGG - chr2_4:38676739-38676758 None:intergenic 40.0%
AAGCTGCAGCACATAAGAAA+TGG - chr2_4:38676740-38676759 None:intergenic 40.0%
! AAACCAACTTGTTCAAGCAC+AGG - chr2_4:38676778-38676797 None:intergenic 40.0%
!!! ATGCTGTTTTGTGTAGGTCA+CGG + chr2_4:38676920-38676939 Msa0327150:intron 40.0%
TTTGTGTAGGTCACGGTTAA+AGG + chr2_4:38676927-38676946 Msa0327150:intron 40.0%
!! TCGTAAGAAAGGTACTCTTC+AGG - chr2_4:38677053-38677072 None:intergenic 40.0%
!! GAAGAGTACCTTTCTTACGA+TGG + chr2_4:38677053-38677072 Msa0327150:CDS 40.0%
GGAATGACATTACTAGCACT+TGG - chr2_4:38677152-38677171 None:intergenic 40.0%
AGTGCTAGTAATGTCATTCC+AGG + chr2_4:38677152-38677171 Msa0327150:CDS 40.0%
! TCACCAGATCAACAGCTTTT+TGG - chr2_4:38677197-38677216 None:intergenic 40.0%
TTGATCTGGTGATCTTCAAG+TGG + chr2_4:38677205-38677224 Msa0327150:exon 40.0%
! AATTGATGATCTTGGACGTG+AGG + chr2_4:38677313-38677332 Msa0327150:three_prime_UTR 40.0%
! TTCCTGCCTTATTGAACACA+AGG + chr2_4:38677391-38677410 Msa0327150:three_prime_UTR 40.0%
TACCTTGTGTTCAATAAGGC+AGG - chr2_4:38677396-38677415 None:intergenic 40.0%
! GCCTTATTGAACACAAGGTA+TGG + chr2_4:38677396-38677415 Msa0327150:intron 40.0%
CTGATGTCTTTCTAAGTGAG+AGG + chr2_4:38677470-38677489 Msa0327150:intron 40.0%
!! CCTTACAAACCGGTTTTGTA+TGG - chr2_4:38677553-38677572 None:intergenic 40.0%
!! CCATACAAAACCGGTTTGTA+AGG + chr2_4:38677550-38677569 Msa0327150:intron 40.0%
ACGTAGTATGAAATAGGGAC+TGG - chr2_4:38677606-38677625 None:intergenic 40.0%
ACTGTTCTCACATTCAGAAC+TGG + chr2_4:38677640-38677659 Msa0327150:intron 40.0%
!! CCAAGACACATTTTAGGTCT+TGG - chr2_4:38677673-38677692 None:intergenic 40.0%
CCAAGACCTAAAATGTGTCT+TGG + chr2_4:38677670-38677689 Msa0327150:intron 40.0%
!! CTCTACAAAACTGGCTTGTA+AGG + chr2_4:38677737-38677756 Msa0327150:intron 40.0%
AGGTCGAACCTCAATCTAAA+AGG + chr2_4:38677856-38677875 Msa0327150:intron 40.0%
ACACTACTTACCACTATGCT+AGG + chr2_4:38677887-38677906 Msa0327150:intron 40.0%
CTAAAACAAACCCAGGCATA+AGG - chr2_4:38677995-38678014 None:intergenic 40.0%
TTCAGCTGTGAACTTAGTTC+TGG - chr2_4:38678116-38678135 None:intergenic 40.0%
TTATTCTGCACTCAAGAGGA+TGG + chr2_4:38678145-38678164 Msa0327150:three_prime_UTR 40.0%
CAACATTAATGAGTGGAGCA+GGG + chr2_4:38678192-38678211 Msa0327150:three_prime_UTR 40.0%
TGTTAAGTGAGACATTGCCA+TGG - chr2_4:38678225-38678244 None:intergenic 40.0%
GGCAATGTCTCACTTAACAA+AGG + chr2_4:38678226-38678245 Msa0327150:three_prime_UTR 40.0%
TGAATGAGGATTTGAACAGG+TGG + chr2_4:38678314-38678333 Msa0327150:intron 40.0%
GAATGAGGATTTGAACAGGT+GGG + chr2_4:38678315-38678334 Msa0327150:intron 40.0%
CTTATGCTGCAAGCTGTAAT+AGG + chr2_4:38678777-38678796 Msa0327150:three_prime_UTR 40.0%
CACAGAACCACTCAGTTTGT+AGG + chr2_4:38673788-38673807 Msa0327150:five_prime_UTR 45.0%
TCATAGTGTGTGTGTGTGTG+TGG - chr2_4:38674012-38674031 None:intergenic 45.0%
GCAACAGAAACCTGGAAAAG+AGG + chr2_4:38674362-38674381 Msa0327150:intron 45.0%
! ATGTGTCATCTGGTGTTGGA+GGG - chr2_4:38674707-38674726 None:intergenic 45.0%
TCACATGTGTCATCTGGTGT+TGG - chr2_4:38674711-38674730 None:intergenic 45.0%
! CGATGTGTCATTATCGTGTC+CGG + chr2_4:38674766-38674785 Msa0327150:intron 45.0%
GCTTAAATTGCAGCTGCGTA+CGG + chr2_4:38674928-38674947 Msa0327150:intron 45.0%
! TCCGCAGATTCTAAGAGATG+AGG + chr2_4:38675235-38675254 Msa0327150:CDS 45.0%
GCCTCATCTCTTAGAATCTG+CGG - chr2_4:38675239-38675258 None:intergenic 45.0%
! GATTCTAAGAGATGAGGCAG+TGG + chr2_4:38675241-38675260 Msa0327150:CDS 45.0%
!! AAGGCTTGTTGAGCTTGGAA+AGG + chr2_4:38675265-38675284 Msa0327150:CDS 45.0%
GAACAGGTTAGTGATGCTAG+TGG + chr2_4:38675556-38675575 Msa0327150:intron 45.0%
ATGCTAGTGGCTATCTAGAG+AGG + chr2_4:38675569-38675588 Msa0327150:CDS 45.0%
TTTATCGCTGTTGTGGTTGC+AGG - chr2_4:38675607-38675626 None:intergenic 45.0%
CGAAAATGGATGGAAGATGC+TGG + chr2_4:38675634-38675653 Msa0327150:CDS 45.0%
TTTCAGTTGGGTGGACCAAA+TGG + chr2_4:38675731-38675750 Msa0327150:intron 45.0%
TTCAGTTGGGTGGACCAAAT+GGG + chr2_4:38675732-38675751 Msa0327150:intron 45.0%
TAGGACACTGTTGTTGATGC+TGG + chr2_4:38675948-38675967 Msa0327150:intron 45.0%
! AAATCTAAGGCGTCCTGTTG+AGG + chr2_4:38676046-38676065 Msa0327150:CDS 45.0%
CTTGACACACTAACCTCAAC+AGG - chr2_4:38676062-38676081 None:intergenic 45.0%
AGGTTAGTGTGTCAAGCAAC+TGG + chr2_4:38676066-38676085 Msa0327150:intron 45.0%
GGGATTCAGCATGGTGAATT+GGG - chr2_4:38676250-38676269 None:intergenic 45.0%
CAAACTACTTTCCTAGGCAG+TGG + chr2_4:38676398-38676417 Msa0327150:CDS 45.0%
AACTACTTTCCTAGGCAGTG+GGG + chr2_4:38676400-38676419 Msa0327150:CDS 45.0%
GGTATCTCCAATGTTGTAGC+AGG - chr2_4:38676443-38676462 None:intergenic 45.0%
AGAGAACTCGATAGAAGCTG+TGG + chr2_4:38676575-38676594 Msa0327150:CDS 45.0%
! ATCTGTTTGGGGTTATGTCG+AGG + chr2_4:38676632-38676651 Msa0327150:CDS 45.0%
!! GAACAAGTTGGTTTCCCACT+TGG + chr2_4:38676784-38676803 Msa0327150:CDS 45.0%
!! TTCCCACTTGGTGTCGTTAA+AGG + chr2_4:38676796-38676815 Msa0327150:CDS 45.0%
TGCCTTTAACGACACCAAGT+GGG - chr2_4:38676801-38676820 None:intergenic 45.0%
ATGCCTTTAACGACACCAAG+TGG - chr2_4:38676802-38676821 None:intergenic 45.0%
! GTGTCGTTAAAGGCATAGCT+GGG + chr2_4:38676806-38676825 Msa0327150:CDS 45.0%
CATGGACATTGGAACAGTTC+CGG - chr2_4:38676967-38676986 None:intergenic 45.0%
ACTCTTCAGGATGTTTGCAG+AGG - chr2_4:38677040-38677059 None:intergenic 45.0%
TGCAACGACCATCGTAAGAA+AGG - chr2_4:38677064-38677083 None:intergenic 45.0%
TAGTAATGTCATTCCAGGCC+AGG + chr2_4:38677157-38677176 Msa0327150:CDS 45.0%
TTGGAAATTCATCGCTTGCC+TGG - chr2_4:38677178-38677197 None:intergenic 45.0%
GTTGCAGGTTACATATACCG+TGG + chr2_4:38677280-38677299 Msa0327150:three_prime_UTR 45.0%
GAGGGAGTAACAGAAAAGTC+AGG + chr2_4:38677489-38677508 Msa0327150:intron 45.0%
AACTAGCATGCCTAGCATAG+TGG - chr2_4:38677900-38677919 None:intergenic 45.0%
! TTGTTGGTGGGCCTAAAGTA+AGG + chr2_4:38677959-38677978 Msa0327150:intron 45.0%
TGGGCCTAAAGTAAGGACTT+GGG + chr2_4:38677966-38677985 Msa0327150:intron 45.0%
AAACAAACCCAGGCATAAGG+TGG - chr2_4:38677992-38678011 None:intergenic 45.0%
CAGCTTATTCTGCACTCAAG+AGG + chr2_4:38678141-38678160 Msa0327150:three_prime_UTR 45.0%
CCTGCTCCACTCATTAATGT+TGG - chr2_4:38678194-38678213 None:intergenic 45.0%
CCAACATTAATGAGTGGAGC+AGG + chr2_4:38678191-38678210 Msa0327150:three_prime_UTR 45.0%
CATAAGTCACTCTCCACAAG+AGG + chr2_4:38678365-38678384 Msa0327150:three_prime_UTR 45.0%
TCGTTTAGCACATCCTCTTG+TGG - chr2_4:38678381-38678400 None:intergenic 45.0%
GCTAAACGATGATGTATGGG+CGG + chr2_4:38678392-38678411 Msa0327150:three_prime_UTR 45.0%
!! AAAAAAAAAAAAAAAAAAAG+TGG + chr2_4:38674562-38674581 Msa0327150:intron 5.0%
CATGCACGAGTGAGAAATGC+TGG - chr2_4:38673816-38673835 None:intergenic 50.0%
GAAAGAACAGCATGTGGTGG+AGG - chr2_4:38673866-38673885 None:intergenic 50.0%
TGTGTGTGTGTGTGTGGCTA+TGG - chr2_4:38674006-38674025 None:intergenic 50.0%
! TTCAGGTACGCCTCTTTTCC+AGG - chr2_4:38674375-38674394 None:intergenic 50.0%
!! GAGCTGGCGTTTGTTGATTC+AGG - chr2_4:38674392-38674411 None:intergenic 50.0%
! CATGTGTCATCTGGTGTTGG+AGG - chr2_4:38674708-38674727 None:intergenic 50.0%
TAAGAGATGAGGCAGTGGCA+AGG + chr2_4:38675246-38675265 Msa0327150:CDS 50.0%
TAGTGTGTCAAGCAACTGGC+TGG + chr2_4:38676070-38676089 Msa0327150:intron 50.0%
CGGGATTCAGCATGGTGAAT+TGG - chr2_4:38676251-38676270 None:intergenic 50.0%
GAACTCGATAGAAGCTGTGG+AGG + chr2_4:38676578-38676597 Msa0327150:CDS 50.0%
CTGCAGCTTCACATTGAGCA+GGG + chr2_4:38676751-38676770 Msa0327150:intron 50.0%
GGTCCTGTGCTTGAACAAGT+TGG + chr2_4:38676772-38676791 Msa0327150:CDS 50.0%
!! GGTGTCGTTAAAGGCATAGC+TGG + chr2_4:38676805-38676824 Msa0327150:CDS 50.0%
AGCTGGGCAGACAAGATTGA+AGG + chr2_4:38676822-38676841 Msa0327150:CDS 50.0%
GTCACGGTTAAAGGCTCACA+AGG + chr2_4:38676936-38676955 Msa0327150:CDS 50.0%
AAAGGCTCACAAGGTCATGC+CGG + chr2_4:38676945-38676964 Msa0327150:CDS 50.0%
GGATCTTGACGCATGGACAT+TGG - chr2_4:38676978-38676997 None:intergenic 50.0%
GTCCATGCGTCAAGATCCTA+TGG + chr2_4:38676980-38676999 Msa0327150:CDS 50.0%
CACCATAGGATCTTGACGCA+TGG - chr2_4:38676985-38677004 None:intergenic 50.0%
CATGCGTCAAGATCCTATGG+TGG + chr2_4:38676983-38677002 Msa0327150:CDS 50.0%
GGCAGAGAGACCTTACAAAC+CGG - chr2_4:38677563-38677582 None:intergenic 50.0%
!! CAAAACTGGCTTGTAAGGCG+AGG + chr2_4:38677742-38677761 Msa0327150:intron 50.0%
GTGGGCCTAAAGTAAGGACT+TGG + chr2_4:38677965-38677984 Msa0327150:intron 50.0%
GTGGCCCAAGTCCTTACTTT+AGG - chr2_4:38677973-38677992 None:intergenic 50.0%
TGTTCACCTCAGCATGATGC+AGG + chr2_4:38678074-38678093 Msa0327150:intron 50.0%
TTCTGCACTCAAGAGGATGG+AGG + chr2_4:38678148-38678167 Msa0327150:three_prime_UTR 50.0%
TCTGCACTCAAGAGGATGGA+GGG + chr2_4:38678149-38678168 Msa0327150:three_prime_UTR 50.0%
! ATGCTGTTTGTGCGATGTCG+CGG + chr2_4:38678339-38678358 Msa0327150:three_prime_UTR 50.0%
!! TTGGTTGGCCTCCTCTTGAT+AGG - chr2_4:38678596-38678615 None:intergenic 50.0%
GCTGGACCCTACAAACTGAG+TGG - chr2_4:38673798-38673817 None:intergenic 55.0%
! AGAACAGCATGTGGTGGAGG+TGG - chr2_4:38673863-38673882 None:intergenic 55.0%
! TCCGGTGTCTGTGTCACTCA+GGG + chr2_4:38674784-38674803 Msa0327150:intron 55.0%
! CTGTGTCACTCAGGGCTTCA+TGG + chr2_4:38674792-38674811 Msa0327150:intron 55.0%
!! GTGGCAAGGCTTGTTGAGCT+TGG + chr2_4:38675260-38675279 Msa0327150:CDS 55.0%
GCTGCAGCTTCACATTGAGC+AGG + chr2_4:38676750-38676769 Msa0327150:intron 55.0%
TGTTCAGCAGCAGCCACCAT+AGG - chr2_4:38676999-38677018 None:intergenic 55.0%
AATTCATCGCTTGCCTGGCC+TGG - chr2_4:38677173-38677192 None:intergenic 55.0%
TGTGGCTTCTGTTCCAGCAG+AGG + chr2_4:38677836-38677855 Msa0327150:intron 55.0%
GATTGAGGTTCGACCTCTGC+TGG - chr2_4:38677852-38677871 None:intergenic 55.0%
ACTTGGGCCACCTTATGCCT+GGG + chr2_4:38677982-38678001 Msa0327150:intron 55.0%
ACAGCACCTGCATCATGCTG+AGG - chr2_4:38678083-38678102 None:intergenic 55.0%
AACGATGATGTATGGGCGGC+AGG + chr2_4:38678396-38678415 Msa0327150:three_prime_UTR 55.0%
! ACAGCATGTGGTGGAGGTGG+CGG - chr2_4:38673860-38673879 None:intergenic 60.0%
! CTGGTGTTGGAGGGACACAC+AGG - chr2_4:38674698-38674717 None:intergenic 60.0%
! GTCCGGTGTCTGTGTCACTC+AGG + chr2_4:38674783-38674802 Msa0327150:intron 60.0%
GCCCTGAGTGACACAGACAC+CGG - chr2_4:38674788-38674807 None:intergenic 60.0%
CAGCTATAGCCCCACTGCCT+AGG - chr2_4:38676412-38676431 None:intergenic 60.0%
CTAGGCAGTGGGGCTATAGC+TGG + chr2_4:38676410-38676429 Msa0327150:CDS 60.0%
GACTTGGGCCACCTTATGCC+TGG + chr2_4:38677981-38678000 Msa0327150:intron 60.0%
TGGAGCAGGGCATGATGCCA+TGG + chr2_4:38678205-38678224 Msa0327150:three_prime_UTR 60.0%
CTGTTTGTGCGATGTCGCGG+AGG + chr2_4:38678342-38678361 Msa0327150:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 38673685 38678812 38673685 ID=Msa0327150;Name=Msa0327150
chr2_4 mRNA 38673685 38678812 38673685 ID=Msa0327150-mRNA-1;Parent=Msa0327150;Name=Msa0327150-mRNA-1;_AED=0.19;_eAED=0.19;_QI=343|1|1|1|0.9|0.81|11|846|351
chr2_4 exon 38673685 38674109 38673685 ID=Msa0327150-mRNA-1:exon:11586;Parent=Msa0327150-mRNA-1
chr2_4 exon 38675195 38675286 38675195 ID=Msa0327150-mRNA-1:exon:11587;Parent=Msa0327150-mRNA-1
chr2_4 exon 38675562 38675665 38675562 ID=Msa0327150-mRNA-1:exon:11588;Parent=Msa0327150-mRNA-1
chr2_4 exon 38675737 38675821 38675737 ID=Msa0327150-mRNA-1:exon:11589;Parent=Msa0327150-mRNA-1
chr2_4 exon 38675951 38676067 38675951 ID=Msa0327150-mRNA-1:exon:11590;Parent=Msa0327150-mRNA-1
chr2_4 exon 38676362 38676471 38676362 ID=Msa0327150-mRNA-1:exon:11591;Parent=Msa0327150-mRNA-1
chr2_4 exon 38676548 38676653 38676548 ID=Msa0327150-mRNA-1:exon:11592;Parent=Msa0327150-mRNA-1
chr2_4 exon 38676757 38676843 38676757 ID=Msa0327150-mRNA-1:exon:11593;Parent=Msa0327150-mRNA-1
chr2_4 exon 38676936 38677412 38676936 ID=Msa0327150-mRNA-1:exon:11594;Parent=Msa0327150-mRNA-1
chr2_4 exon 38678086 38678247 38678086 ID=Msa0327150-mRNA-1:exon:11595;Parent=Msa0327150-mRNA-1
chr2_4 exon 38678333 38678812 38678333 ID=Msa0327150-mRNA-1:exon:11596;Parent=Msa0327150-mRNA-1
chr2_4 five_prime_UTR 38673685 38674027 38673685 ID=Msa0327150-mRNA-1:five_prime_utr;Parent=Msa0327150-mRNA-1
chr2_4 CDS 38674028 38674109 38674028 ID=Msa0327150-mRNA-1:cds;Parent=Msa0327150-mRNA-1
chr2_4 CDS 38675195 38675286 38675195 ID=Msa0327150-mRNA-1:cds;Parent=Msa0327150-mRNA-1
chr2_4 CDS 38675562 38675665 38675562 ID=Msa0327150-mRNA-1:cds;Parent=Msa0327150-mRNA-1
chr2_4 CDS 38675737 38675821 38675737 ID=Msa0327150-mRNA-1:cds;Parent=Msa0327150-mRNA-1
chr2_4 CDS 38675951 38676067 38675951 ID=Msa0327150-mRNA-1:cds;Parent=Msa0327150-mRNA-1
chr2_4 CDS 38676362 38676471 38676362 ID=Msa0327150-mRNA-1:cds;Parent=Msa0327150-mRNA-1
chr2_4 CDS 38676548 38676653 38676548 ID=Msa0327150-mRNA-1:cds;Parent=Msa0327150-mRNA-1
chr2_4 CDS 38676757 38676843 38676757 ID=Msa0327150-mRNA-1:cds;Parent=Msa0327150-mRNA-1
chr2_4 CDS 38676936 38677208 38676936 ID=Msa0327150-mRNA-1:cds;Parent=Msa0327150-mRNA-1
chr2_4 three_prime_UTR 38677209 38677412 38677209 ID=Msa0327150-mRNA-1:three_prime_utr;Parent=Msa0327150-mRNA-1
chr2_4 three_prime_UTR 38678086 38678247 38678086 ID=Msa0327150-mRNA-1:three_prime_utr;Parent=Msa0327150-mRNA-1
chr2_4 three_prime_UTR 38678333 38678812 38678333 ID=Msa0327150-mRNA-1:three_prime_utr;Parent=Msa0327150-mRNA-1
Gene Sequence

>Msa0327150

ATGATTTCTACTTTCATTTTCTTTCACTCGTTTCTCTTCCTGTATATTCTATCAACTCCTTCATGTGCTTCTTTGTTTTCTGGAATTGAAACTGGAGATTTAGAAAAACGGGGTGATTTGTTTCCGCAGATTCTAAGAGATGAGGCAGTGGCAAGGCTTGTTGAGCTTGGAAAGGTTAGTGATGCTAGTGGCTATCTAGAGAGGACATTTTTGAGTCCTGCAACCACAACAGCGATAAATCTTATTCGAAAATGGATGGAAGATGCTGGCTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGAGTTGAGGGTGCAAATGCAAATGCAGAAGCTTTGTTGGTTGGATCTCACATGGACACTGTTGTTGATGCTGGTAAATTTGATGGAGCACTAGGAATCGTCTCTGCAATATCTGCATTGAAGGTTATGAATGTCAATGGAATGCTGCAAAATCTAAGGCGTCCTGTTGAGGTGATTGCATTTTGTGATGAAGAGGGTGTCAGATTTCAAACTACTTTCCTAGGCAGTGGGGCTATAGCTGGTATTTTACCTGCTACAACATTGGAGATACCTGATAAGAGGAATGTAACGGTAAAAGATGTTCTTAAAGAGAACTCGATAGAAGCTGTGGAGGAAATGTTTTTGCAGCTCAAGTATGATCCAAAATCTGTTTGGGGTTATGTCGAGCTTCACATTGAGCAGGGTCCTGTGCTTGAACAAGTTGGTTTCCCACTTGGTGTCGTTAAAGGCATAGCTGGGCAGACAAGATTGAAGGTCACGGTTAAAGGCTCACAAGGTCATGCCGGAACTGTTCCAATGTCCATGCGTCAAGATCCTATGGTGGCTGCTGCTGAACAAATTGTACTTATGGAAAGCCTCTGCAAACATCCTGAAGAGTACCTTTCTTACGATGGTCGTTGCAGCGATTCATCGATTAAATCACTTTCAAGTTCACTTGTTTGTACTGTTGGTGAAATATCAACATGGCCAAGTGCTAGTAATGTCATTCCAGGCCAGGCAAGCGATGAATTTCCAAAAAGCTGTTGA
Protein sequence

>Msa0327150

MISTFIFFHSFLFLYILSTPSCASLFSGIETGDLEKRGDLFPQILRDEAVARLVELGKVSDASGYLERTFLSPATTTAINLIRKWMEDAGLRTWVDQMGNVHGRVEGANANAEALLVGSHMDTVVDAGKFDGALGIVSAISALKVMNVNGMLQNLRRPVEVIAFCDEEGVRFQTTFLGSGAIAGILPATTLEIPDKRNVTVKDVLKENSIEAVEEMFLQLKYDPKSVWGYVELHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVKGSQGHAGTVPMSMRQDPMVAAAEQIVLMESLCKHPEEYLSYDGRCSDSSIKSLSSSLVCTVGEISTWPSASNVIPGQASDEFPKSC*