AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473450 MtrunA17_Chr3g0129301 95.442 724 9 1 1 724 1 700 0.0 1408
Msa0473450 MtrunA17_Chr2g0327291 29.305 604 371 11 59 656 21 574 9.49e-73 247
Msa0473450 MtrunA17_Chr2g0327291 26.016 246 151 3 457 674 64 306 4.94e-19 91.7
Msa0473450 MtrunA17_Chr4g0028471 29.412 561 350 8 99 656 57 574 1.52e-71 244
Msa0473450 MtrunA17_Chr4g0028471 26.316 247 149 4 457 674 64 306 5.29e-19 91.3
Msa0473450 MtrunA17_Chr8g0371361 27.830 636 368 15 83 680 131 713 1.04e-62 223
Msa0473450 MtrunA17_Chr8g0371361 27.778 288 166 8 457 705 154 438 4.09e-22 101
Msa0473450 MtrunA17_Chr3g0119921 27.979 579 364 11 97 660 166 706 3.55e-62 221
Msa0473450 MtrunA17_Chr7g0220881 27.520 625 360 15 96 680 144 715 7.50e-62 220
Msa0473450 MtrunA17_Chr7g0220881 27.431 288 167 7 457 705 154 438 2.61e-22 102
Msa0473450 MtrunA17_Chr1g0181461 28.499 593 355 13 116 680 10 561 2.01e-60 213
Msa0473450 MtrunA17_Chr1g0181461 30.345 290 158 10 469 716 12 299 2.25e-22 102
Msa0473450 MtrunA17_Chr3g0130211 30.851 188 88 6 446 607 21 192 1.86e-15 77.0
Msa0473450 MtrunA17_Chr1g0180601 27.236 246 152 8 454 674 1052 1295 2.14e-14 77.4
Msa0473450 MtrunA17_Chr8g0344651 26.383 235 149 7 451 663 592 824 2.41e-14 77.4
Msa0473450 MtrunA17_Chr7g0264631 26.016 246 155 8 454 674 1078 1321 8.20e-14 75.5
Msa0473450 MtrunA17_Chr4g0041871 27.632 228 139 7 454 658 1003 1227 1.38e-13 74.7
Msa0473450 MtrunA17_Chr4g0060431 24.534 322 196 10 422 712 582 887 5.42e-12 69.7
Msa0473450 MtrunA17_Chr1g0178481 28.718 195 112 7 461 630 384 576 7.00e-12 68.9
Msa0473450 MtrunA17_Chr5g0410921 30.811 185 103 7 468 630 370 551 1.53e-11 68.2
Msa0473450 MtrunA17_Chr3g0093091 24.436 266 172 6 476 712 642 907 1.65e-11 67.8
Msa0473450 MtrunA17_Chr1g0156821 29.592 196 116 6 457 630 994 1189 2.96e-11 67.4
Msa0473450 MtrunA17_Chr4g0060421 24.534 322 196 10 422 712 117 422 5.12e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473450 AT5G64840.1 75.820 732 129 7 1 724 1 692 0.0 1065
Msa0473450 AT5G09930.1 71.429 728 154 6 1 724 1 678 0.0 981
Msa0473450 AT5G60790.1 28.366 557 353 7 103 656 66 579 4.18e-68 235
Msa0473450 AT5G60790.1 26.016 246 151 4 457 674 69 311 1.12e-17 87.8
Msa0473450 AT1G64550.1 27.903 577 370 10 96 660 165 707 4.67e-65 229
Msa0473450 AT3G54540.2 27.087 587 360 13 106 662 163 711 1.24e-58 211
Msa0473450 AT3G54540.2 27.723 303 171 6 457 716 163 460 6.37e-24 107
Msa0473450 AT3G54540.1 27.087 587 360 13 106 662 163 711 1.24e-58 211
Msa0473450 AT3G54540.1 27.723 303 171 6 457 716 163 460 6.37e-24 107
Msa0473450 AT1G28010.1 26.961 204 123 6 471 652 389 588 1.49e-12 72.0
Msa0473450 AT1G27940.2 25.778 225 137 8 452 652 155 373 1.76e-12 71.6
Msa0473450 AT1G27940.2 26.904 197 120 6 457 630 790 985 4.78e-12 70.1
Msa0473450 AT4G33460.1 30.570 193 109 7 457 630 40 226 2.35e-12 68.6
Msa0473450 AT4G25960.1 27.391 230 143 7 468 677 415 640 2.68e-12 71.2
Msa0473450 AT1G27940.1 25.778 225 137 8 452 652 369 587 3.23e-12 70.9
Msa0473450 AT1G27940.1 26.904 197 120 6 457 630 1004 1199 8.27e-12 69.7
Msa0473450 AT5G52860.1 25.547 274 177 6 476 723 49 321 4.08e-12 70.1
Msa0473450 AT3G28390.1 25.641 234 150 9 468 681 361 590 9.05e-12 69.3
Msa0473450 AT5G46540.1 23.140 242 146 6 432 652 1000 1222 2.90e-11 67.8
Msa0473450 AT3G28415.2 25.991 227 144 9 468 674 360 582 3.02e-11 67.8
Msa0473450 AT3G28415.1 26.339 224 141 9 471 674 355 574 3.12e-11 67.8
Msa0473450 AT3G28345.1 23.132 281 188 10 454 710 356 632 5.99e-11 66.6
Msa0473450 AT1G10680.1 27.322 183 112 5 468 630 375 556 9.96e-11 65.9

Find 198 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATTTGCAGTATTATT+TGG 0.118260 3_3:+76073570 Msa0473450:intron
TTGGATTTGGCTTTCAATTT+AGG 0.142201 3_3:-76073655 None:intergenic
TCTCTGCCTCACACTTCTTC+TGG 0.178581 3_3:+76068360 Msa0473450:five_prime_UTR
TACTTTACTAAAATTGATTA+TGG 0.188943 3_3:+76070790 Msa0473450:CDS
ACCATCAACTCTACTTGTTT+TGG 0.234739 3_3:+76072089 Msa0473450:CDS
ACGAGCTCAGGCTGTGAATT+TGG 0.235081 3_3:+76069131 Msa0473450:CDS
AATGGAGGTTGCGGGGAAAT+TGG 0.247694 3_3:+76069023 Msa0473450:CDS
GGAGTTGATGGGGAGGCTTT+TGG 0.263336 3_3:+76069086 Msa0473450:CDS
GGTTAATTGGGAAGTGAAAA+AGG 0.267296 3_3:+76068801 Msa0473450:CDS
CAGAAATTGGAAAGACTTCT+TGG 0.282365 3_3:+76070486 Msa0473450:intron
GACGATATTAAAGGACTTCT+TGG 0.283294 3_3:+76071060 Msa0473450:CDS
TACCTTTGACATCTTGGATT+TGG 0.289284 3_3:-76073668 None:intergenic
GAAGTTTACCTTTGACATCT+TGG 0.293270 3_3:-76073674 None:intergenic
GTGGGTTTAGTTGGTGTAAA+TGG 0.300569 3_3:+76068832 Msa0473450:CDS
GGTTTGGAGGAACCGGATTC+GGG 0.308979 3_3:+76068889 Msa0473450:CDS
TCCAAAACAAGTAGAGTTGA+TGG 0.315178 3_3:-76072090 None:intergenic
ACAGTTAGGAACTTGGATTT+TGG 0.319199 3_3:+76070594 Msa0473450:CDS
TGAGGGCTCTGTTAATGATT+TGG 0.320174 3_3:+76069065 Msa0473450:CDS
AGTTGCTTACTCGTATTTCA+TGG 0.323148 3_3:-76074198 None:intergenic
ACCTCAAGCATTTCTTTAGA+AGG 0.324032 3_3:-76072138 None:intergenic
AGGTTTGGAGGAACCGGATT+CGG 0.327589 3_3:+76068888 Msa0473450:CDS
AGAAGATTGTGTGGCGGTTA+TGG 0.334542 3_3:-76068396 None:intergenic
ATTATAGCATTTGTGATTCC+TGG 0.339255 3_3:+76074051 Msa0473450:three_prime_UTR
TTAGGTGCCGGAGCAAGTTC+TGG 0.354938 3_3:+76070102 Msa0473450:CDS
AACGGAAACAAATGAAAATC+AGG 0.359605 3_3:+76070535 Msa0473450:CDS
GATGAGGATTATTGCAGGTT+TGG 0.363247 3_3:+76068873 Msa0473450:CDS
TGTTAATGATTTGGAGTTGA+TGG 0.369896 3_3:+76069074 Msa0473450:CDS
TTGATGCCTGAGCTTGGTTT+TGG 0.370792 3_3:+76069180 Msa0473450:CDS
ACTTTACTAAAATTGATTAT+GGG 0.374049 3_3:+76070791 Msa0473450:CDS
GTGTTAGTGTTGAAGGTGTT+GGG 0.375541 3_3:-76068538 None:intergenic
ACAGGCTGAGGCACTTGATC+TGG 0.376554 3_3:+76070987 Msa0473450:intron
TAACTATTTCGAGCAGAATC+AGG 0.379580 3_3:+76070868 Msa0473450:CDS
TTCATTTGTTTCCGTTCAAA+TGG 0.384165 3_3:-76070528 None:intergenic
CTCTGCCTCACACTTCTTCT+GGG 0.390476 3_3:+76068361 Msa0473450:five_prime_UTR
GGGGTTAGTGTTAGTGTTGA+AGG 0.391042 3_3:-76068545 None:intergenic
TTAATCACATTCCCCGAATC+CGG 0.391790 3_3:-76068901 None:intergenic
AAAGAGGAAATGGAGGTTGC+GGG 0.392645 3_3:+76069015 Msa0473450:CDS
ATTGCCATTCTTGGTCCAAA+TGG 0.399808 3_3:+76070755 Msa0473450:CDS
CAGAGGAAGCTGCCGAGGAC+TGG 0.401089 3_3:+76071031 Msa0473450:CDS
GTACTCTTGCCACATCCATT+TGG 0.408591 3_3:-76070770 None:intergenic
TGGAGGAGTGACGATATTAA+AGG 0.411374 3_3:+76071051 Msa0473450:CDS
AGTGTTGAAGGTGTTGGGTT+TGG 0.414116 3_3:-76068533 None:intergenic
GGTGAGAAAGTGGGTTTAGT+TGG 0.417873 3_3:+76068823 Msa0473450:CDS
TTAGATTTATTCACCAAATG+AGG 0.419755 3_3:+76073920 Msa0473450:three_prime_UTR
GACAAACTTCAATAAATTGC+CGG 0.421141 3_3:+76068279 None:intergenic
TCATCTAACAACAACAAATC+TGG 0.426653 3_3:-76069808 None:intergenic
CTCCGGTGAGGTCGAGGTGG+TGG 0.428069 3_3:-76068453 None:intergenic
AGTGTTAGTGTTGAAGGTGT+TGG 0.429428 3_3:-76068539 None:intergenic
GGCAAATCTTACAATTGAAA+GGG 0.431561 3_3:+76070724 Msa0473450:CDS
TATTGCAGGTTTGGAGGAAC+CGG 0.432241 3_3:+76068882 Msa0473450:CDS
TGTAGAGGATTCTGATAGGT+TGG 0.440022 3_3:+76069203 Msa0473450:CDS
TTTGAAGTGAAGAATCGATT+GGG 0.440366 3_3:-76068565 None:intergenic
AGGATAACTTCACCGCTGAT+TGG 0.444666 3_3:-76070824 None:intergenic
AGATTGGACGTGTCTTCAAT+TGG 0.444820 3_3:+76069459 Msa0473450:CDS
AGAGAGTTGATAAGCAGGTT+AGG 0.447090 3_3:+76070084 Msa0473450:CDS
ACGCAGATGAGGATTATTGC+AGG 0.447820 3_3:+76068868 Msa0473450:CDS
TGATTCTGCTCGAAATAGTT+AGG 0.448814 3_3:-76070866 None:intergenic
CGATGAGATGAGTGTGGGAT+AGG 0.448984 3_3:-76068510 None:intergenic
TCAAGATCAAGGTGATTTGT+AGG 0.461063 3_3:-76069832 None:intergenic
GTCGAGGTGGTGGAGCTTTG+AGG 0.461557 3_3:-76068443 None:intergenic
CGTTTCGTCTGGTGTGAAGT+TGG 0.462519 3_3:+76068735 Msa0473450:CDS
TCAGCGGTGAAGTTATCCTT+GGG 0.465273 3_3:+76070828 Msa0473450:CDS
TGGAGAAGAATCTTGATGCC+AGG 0.465875 3_3:+76073590 Msa0473450:CDS
TGTTGTAACAGTTAGGAACT+TGG 0.467480 3_3:+76070587 Msa0473450:CDS
AGTTTCGTCCACGGCGGCTA+CGG 0.469289 3_3:-76068617 None:intergenic
TTGGTGTAGAGGATTCTGAT+AGG 0.471996 3_3:+76069199 Msa0473450:CDS
AAAATTGTTCTCCTCATGTA+TGG 0.472290 3_3:-76073899 None:intergenic
GAGCTAACTTTCTGCGGCTC+CGG 0.474544 3_3:-76068298 None:intergenic
ATCAGCGGTGAAGTTATCCT+TGG 0.477715 3_3:+76070827 Msa0473450:CDS
TTAGTTGGTGTAAATGGTGC+GGG 0.479604 3_3:+76068838 Msa0473450:CDS
CTTTGTCGTCAAGCTCAGCC+TGG 0.480481 3_3:-76073630 None:intergenic
ACATCCATTTGGACCAAGAA+TGG 0.482881 3_3:-76070759 None:intergenic
GGAGCTTCAAGCGTTTCGTC+TGG 0.483696 3_3:+76068724 Msa0473450:CDS
GTTAATGATTTGGAGTTGAT+GGG 0.485283 3_3:+76069075 Msa0473450:CDS
AGACGAAACGCTTGAAGCTC+CGG 0.485415 3_3:-76068722 None:intergenic
GAGGATTATTGCAGGTTTGG+AGG 0.486864 3_3:+76068876 Msa0473450:CDS
TTTGCTTCAGAGACGAGCTC+AGG 0.488113 3_3:+76069119 Msa0473450:CDS
ACGATATTAAAGGACTTCTT+GGG 0.489351 3_3:+76071061 Msa0473450:CDS
GTCGAGTCTGTATTGGAGAT+TGG 0.490869 3_3:+76069443 Msa0473450:CDS
AGTTAAAGATGGCACTGTGC+AGG 0.495959 3_3:+76072384 Msa0473450:CDS
AGGCAAATCTTACAATTGAA+AGG 0.498825 3_3:+76070723 Msa0473450:CDS
GAAGATCTGTTGTAACAGTT+AGG 0.500389 3_3:+76070580 Msa0473450:CDS
GGGTGTATCCAGGACATTTG+AGG 0.501010 3_3:+76069969 Msa0473450:CDS
ATATTCTTTCAAAGGCGACT+TGG 0.503007 3_3:+76070007 Msa0473450:CDS
TTCTCAGTATATTCTTTCAA+AGG 0.503936 3_3:+76069999 Msa0473450:CDS
TCTCCTCATGTATGGTGTAA+TGG 0.504395 3_3:-76073891 None:intergenic
TTGTATATATCATGTCTCAA+TGG 0.506183 3_3:+76073985 Msa0473450:three_prime_UTR
CCGTGCTTCGACTGCTGAGA+AGG 0.506367 3_3:+76070125 Msa0473450:CDS
ATAATTTCCCTCAAATGTCC+TGG 0.507523 3_3:-76069977 None:intergenic
TGAGGCCAACTCCATTGTGT+TGG 0.508062 3_3:-76068425 None:intergenic
GGATGAACCAACGAATCACT+TGG 0.511588 3_3:+76072110 Msa0473450:CDS
GGTATATCCAAGTGATTCGT+TGG 0.512337 3_3:-76072117 None:intergenic
CTTCCACTGCTTCCACGCAC+AGG 0.512959 3_3:-76070561 None:intergenic
TGAAGATTATCTTAACAAGC+AGG 0.517743 3_3:+76069870 Msa0473450:CDS
ACTCAATTGTGTCAAGATCA+AGG 0.517929 3_3:-76069843 None:intergenic
GTGCAAAGAATTCAAAGAGA+TGG 0.519064 3_3:+76073852 Msa0473450:CDS
GGCACTGTGCAGGATTATGC+TGG 0.519823 3_3:+76072394 Msa0473450:CDS
TAAAGAGGAAATGGAGGTTG+CGG 0.520716 3_3:+76069014 Msa0473450:CDS
TGTCAGTGTCGAGTCTGTAT+TGG 0.521180 3_3:+76069436 Msa0473450:intron
ATCGTCACTCCTCCAGTCCT+CGG 0.521542 3_3:-76071043 None:intergenic
GTTGCTTACTCGTATTTCAT+GGG 0.521814 3_3:-76074197 None:intergenic
TGAATGCTCCGGTGAGGTCG+AGG 0.525529 3_3:-76068459 None:intergenic
AGGAAGCTGCCGAGGACTGG+AGG 0.525603 3_3:+76071034 Msa0473450:CDS
AAAGTGCAGAAGGCGCTTGA+GGG 0.528862 3_3:+76069048 Msa0473450:CDS
TAGATTTATTCACCAAATGA+GGG 0.529000 3_3:+76073921 Msa0473450:three_prime_UTR
GGTGTATCCAGGACATTTGA+GGG 0.529834 3_3:+76069970 Msa0473450:CDS
CAAGCAAAACAGAAGTCTAA+AGG 0.530649 3_3:+76073830 Msa0473450:CDS
TTCCCTGTGCGTGGAAGCAG+TGG 0.531912 3_3:+76070558 Msa0473450:CDS
TCGTTCATCGACTGAAGTAT+CGG 0.532089 3_3:-76068674 None:intergenic
AGTAAGTTGATGCCTGAGCT+TGG 0.532687 3_3:+76069174 Msa0473450:CDS
AGCACGGCCAGAACTTGCTC+CGG 0.538120 3_3:-76070109 None:intergenic
TGAGACATGATATATACAAA+AGG 0.541276 3_3:-76073981 None:intergenic
GAAAGTGCAGAAGGCGCTTG+AGG 0.547913 3_3:+76069047 Msa0473450:CDS
AAACTGACATGGGTGTATCC+AGG 0.548307 3_3:+76069959 Msa0473450:CDS
ATCATGAGATACGGTGATAA+CGG 0.548364 3_3:-76072323 None:intergenic
CTCCACCACCTCGACCTCAC+CGG 0.548859 3_3:+76068451 Msa0473450:CDS
TCTATTGAGTGGTGGTGAGA+AGG 0.550123 3_3:+76071125 Msa0473450:CDS
TGTGGGATAGGGTGCGTGGA+AGG 0.551650 3_3:-76068498 None:intergenic
TTGATAAGCAGGTTAGGTGC+CGG 0.551653 3_3:+76070090 Msa0473450:CDS
AAGGAAGAAGCAAAAGATGC+AGG 0.553204 3_3:+76073799 Msa0473450:CDS
AGAGTGATTGAAGTTAAAGA+TGG 0.555267 3_3:+76072373 Msa0473450:CDS
GACAGCAGAGGAAGCTGCCG+AGG 0.556088 3_3:+76071026 Msa0473450:CDS
TGAAACACAGTATGCTGCAT+GGG 0.558064 3_3:+76070032 Msa0473450:CDS
GGAGAAGAATCTTGATGCCA+GGG 0.558623 3_3:+76073591 Msa0473450:CDS
AAACAAGAGAGTTGATAAGC+AGG 0.561228 3_3:+76070079 Msa0473450:CDS
TTACAGTCTCAACAACAACT+TGG 0.561617 3_3:+76074080 Msa0473450:three_prime_UTR
GTTTGGCGATGAGATGAGTG+TGG 0.563673 3_3:-76068516 None:intergenic
AATTTGAGGTTTCGCAGAGT+AGG 0.564026 3_3:+76068962 Msa0473450:CDS
CGGGAAAGACGACGCAGATG+AGG 0.567288 3_3:+76068857 Msa0473450:CDS
ACCATCCAACACAATGGAGT+TGG 0.573181 3_3:+76068420 Msa0473450:exon
TCATGTATGGTGTAATGGAA+TGG 0.574779 3_3:-76073886 None:intergenic
AAAATCAGGTTCCCTGTGCG+TGG 0.579340 3_3:+76070549 Msa0473450:CDS
TCTACACCAAAACCAAGCTC+AGG 0.581292 3_3:-76069186 None:intergenic
TTGAAGTGAAGAATCGATTG+GGG 0.582917 3_3:-76068564 None:intergenic
TTCGTCCACGGCGGCTACGG+CGG 0.583554 3_3:-76068614 None:intergenic
TATGTGTGTCACAAAACGAC+TGG 0.586311 3_3:-76074233 None:intergenic
GCCAACTCCATTGTGTTGGA+TGG 0.587612 3_3:-76068421 None:intergenic
TTGAGACTGTAAACTTCACC+AGG 0.588650 3_3:-76074069 None:intergenic
TTCGCAGAGTAGGACGGTGA+GGG 0.588910 3_3:+76068972 Msa0473450:CDS
TTCCACTGCTTCCACGCACA+GGG 0.589830 3_3:-76070560 None:intergenic
CGTAAAGTTTCTCTATTGAG+TGG 0.590268 3_3:+76071114 Msa0473450:CDS
TTGATCTTGACACAATTGAG+TGG 0.591241 3_3:+76069845 Msa0473450:CDS
AGCTACTGAAGTTTCGTCCA+CGG 0.592252 3_3:-76068626 None:intergenic
ATGATTTGGAGTTGATGGGG+AGG 0.592271 3_3:+76069079 Msa0473450:CDS
GGCACTTGATCTGGAAAAGA+CGG 0.593050 3_3:+76070996 Msa0473450:CDS
AACAATAAACAATCTAACAC+CGG 0.593481 3_3:+76068703 Msa0473450:CDS
TTTAGTTGGTGTAAATGGTG+CGG 0.595148 3_3:+76068837 Msa0473450:CDS
CCTTCTCAGCAGTCGAAGCA+CGG 0.596601 3_3:-76070125 None:intergenic
TTAATGATTTGGAGTTGATG+GGG 0.598503 3_3:+76069076 Msa0473450:CDS
GATTTATTCACCAAATGAGG+GGG 0.599202 3_3:+76073923 Msa0473450:three_prime_UTR
GAAATTGGAGAAAGTGCAGA+AGG 0.599509 3_3:+76069038 Msa0473450:CDS
TGAATCGAGAATGAATGCTC+CGG 0.603746 3_3:-76068470 None:intergenic
GATGAGATGAGTGTGGGATA+GGG 0.605531 3_3:-76068509 None:intergenic
CTTCAATTGGAAGTGTCTAG+TGG 0.605750 3_3:+76069472 Msa0473450:CDS
AAAGTACCGATCATGAGATA+CGG 0.606013 3_3:-76072332 None:intergenic
AAGAGGAAATGGAGGTTGCG+GGG 0.614608 3_3:+76069016 Msa0473450:CDS
TGAGGTTTCGCAGAGTAGGA+CGG 0.614833 3_3:+76068966 Msa0473450:CDS
AGCCAAATCCAAGATGTCAA+AGG 0.614850 3_3:+76073666 Msa0473450:CDS
GAAGTGTGAGGCAGAGAACG+AGG 0.618933 3_3:-76068354 None:intergenic
TTTATCCGCCGTAGCCGCCG+TGG 0.619187 3_3:+76068609 Msa0473450:CDS
GCAAATCTTACAATTGAAAG+GGG 0.619588 3_3:+76070725 Msa0473450:CDS
AGATTTATTCACCAAATGAG+GGG 0.619882 3_3:+76073922 Msa0473450:three_prime_UTR
TCGTGAGAAATGATAACCAT+CGG 0.626896 3_3:-76069898 None:intergenic
AAAGTTTCTCTATTGAGTGG+TGG 0.627890 3_3:+76071117 Msa0473450:CDS
ATCAGGCTGAGAAAGAAGCA+AGG 0.628611 3_3:+76073780 Msa0473450:intron
ATTCTTGGTCCAAATGGATG+TGG 0.633025 3_3:+76070761 Msa0473450:CDS
TGAGTGTGGGATAGGGTGCG+TGG 0.633289 3_3:-76068502 None:intergenic
TAACAAGCAGGATGTGCCGA+TGG 0.633293 3_3:+76069882 Msa0473450:CDS
ATTGGAAAGACTTCTTGGAG+AGG 0.634177 3_3:+76070491 Msa0473450:CDS
GCAATACATTATGCTCCCCA+AGG 0.635416 3_3:-76070844 None:intergenic
GTTTGGAGGAACCGGATTCG+GGG 0.635581 3_3:+76068890 Msa0473450:CDS
TGGCAGATGAGGATGTGTCT+TGG 0.636187 3_3:+76069246 Msa0473450:CDS
TAGTAGAGAAGCCATTTGAA+CGG 0.638546 3_3:+76070517 Msa0473450:CDS
GACGGTGCTTGAGACAGCAG+AGG 0.644892 3_3:+76071014 Msa0473450:CDS
CAATTGGAAGTGTCTAGTGG+TGG 0.645556 3_3:+76069475 Msa0473450:CDS
TTAGTGGTGGATGGCAGATG+AGG 0.647334 3_3:+76069235 Msa0473450:CDS
TTTCGCAGAGTAGGACGGTG+AGG 0.649818 3_3:+76068971 Msa0473450:CDS
TTTGGCGATGAGATGAGTGT+GGG 0.650568 3_3:-76068515 None:intergenic
TTATCACCGTATCTCATGAT+CGG 0.661904 3_3:+76072326 Msa0473450:CDS
CTTCTGACCATCCAACACAA+TGG 0.662279 3_3:+76068414 Msa0473450:exon
ACCTTCTAAAGAAATGCTTG+AGG 0.662881 3_3:+76072137 Msa0473450:CDS
TTGAAACACAGTATGCTGCA+TGG 0.664460 3_3:+76070031 Msa0473450:CDS
GGAGGCAATAAATGAGTACG+AGG 0.667247 3_3:+76072297 Msa0473450:intron
TGGTGGTATTGCAAATTGCA+TGG 0.677034 3_3:+76069492 Msa0473450:CDS
CGAGAATGAATGCTCCGGTG+AGG 0.684460 3_3:-76068465 None:intergenic
CAGCGGTGAAGTTATCCTTG+GGG 0.685607 3_3:+76070829 Msa0473450:CDS
ATTCCATTACACCATACATG+AGG 0.693271 3_3:+76073888 Msa0473450:three_prime_UTR
GGTTTAGAGAAGCCAATCAG+CGG 0.693977 3_3:+76070812 Msa0473450:CDS
TGGATGGTCAGAAGATTGTG+TGG 0.709613 3_3:-76068405 None:intergenic
ATGCTCCGGTGAGGTCGAGG+TGG 0.714725 3_3:-76068456 None:intergenic
AAAATTGTGGAAACTGACAT+GGG 0.723967 3_3:+76069949 Msa0473450:CDS
AAACACATTAGCATCCGCTG+TGG 0.734759 3_3:+76074154 Msa0473450:three_prime_UTR
ATACGAGTAAGCAACTGACG+TGG 0.746420 3_3:+76074205 Msa0473450:three_prime_UTR
GAGGCAATAAATGAGTACGA+GGG 0.751118 3_3:+76072298 Msa0473450:CDS
TACTGAAGTTTCGTCCACGG+CGG 0.754126 3_3:-76068623 None:intergenic
ATGGTCAGAAGATTGTGTGG+CGG 0.755785 3_3:-76068402 None:intergenic
ACTTCAGTCGATGAACGACG+CGG 0.772804 3_3:+76068679 Msa0473450:CDS
AAATAGCATTAAGACCACAG+CGG 0.779665 3_3:-76074168 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTTATCATTTAAAAATAA+CGG - chr3_3:76069619-76069638 None:intergenic 10.0%
!! TTTAAATGATAAATCAATAA+AGG + chr3_3:76069624-76069643 Msa0473450:intron 10.0%
!! TTAAATGATAAATCAATAAA+GGG + chr3_3:76069625-76069644 Msa0473450:intron 10.0%
!!! AAACATTAATTTTTACAATA+CGG - chr3_3:76070409-76070428 None:intergenic 10.0%
!! TCAAAAAAAAAGAAAATATT+AGG - chr3_3:76072222-76072241 None:intergenic 10.0%
!! AATTATAAATCAATATTAGT+CGG - chr3_3:76072268-76072287 None:intergenic 10.0%
!!! TTTTTTTTACTAAAATTAAG+GGG + chr3_3:76073181-76073200 Msa0473450:intron 10.0%
!! AATATTAGAAAAACTTACAA+AGG + chr3_3:76068760-76068779 Msa0473450:CDS 15.0%
!! AAAAAGAATACAAATGATTA+TGG + chr3_3:76069563-76069582 Msa0473450:intron 15.0%
!! TATTTAAGTGACTAATATTA+AGG - chr3_3:76070326-76070345 None:intergenic 15.0%
!!! TTCTTTTAAGTAAATAACAT+AGG - chr3_3:76070444-76070463 None:intergenic 15.0%
!! TACTTTACTAAAATTGATTA+TGG + chr3_3:76070790-76070809 Msa0473450:CDS 15.0%
!! ACTTTACTAAAATTGATTAT+GGG + chr3_3:76070791-76070810 Msa0473450:CDS 15.0%
!!! TTCTTAAATTTCTTTAAAGA+CGG - chr3_3:76071438-76071457 None:intergenic 15.0%
!! TTTAAAGAAATTTAAGAAAC+AGG + chr3_3:76071440-76071459 Msa0473450:intron 15.0%
!!! TAAATGTATTTGACAATTTT+GGG + chr3_3:76071546-76071565 Msa0473450:intron 15.0%
!! ATGATTTATTCCTAATAAAA+AGG + chr3_3:76071659-76071678 Msa0473450:intron 15.0%
!! TGATTTATTCCTAATAAAAA+GGG + chr3_3:76071660-76071679 Msa0473450:intron 15.0%
!! AGTATATTTAAACAATCTAT+GGG - chr3_3:76072475-76072494 None:intergenic 15.0%
!! AAGTATATTTAAACAATCTA+TGG - chr3_3:76072476-76072495 None:intergenic 15.0%
!! ATATTCATTATATACAAAAC+TGG - chr3_3:76073484-76073503 None:intergenic 15.0%
!!! ATTGATTTATTTGAAAAATC+AGG + chr3_3:76073763-76073782 Msa0473450:intron 15.0%
!!! AAAAACGCAATTTTCATATT+TGG - chr3_3:76068934-76068953 None:intergenic 20.0%
!! AATGATTATGGTTAGTAATT+AGG + chr3_3:76069575-76069594 Msa0473450:intron 20.0%
!!! TATCATTTAAAAATAACGGA+CGG - chr3_3:76069615-76069634 None:intergenic 20.0%
!! ATTGCAATTTACAACTATTT+CGG - chr3_3:76070378-76070397 None:intergenic 20.0%
!!! ATTAATTTTTACAATACGGA+AGG - chr3_3:76070405-76070424 None:intergenic 20.0%
!!! AAAGTTTTGAAATGAAGAAT+TGG - chr3_3:76070937-76070956 None:intergenic 20.0%
!!! AAAGATTTTCAAAATGTCTA+AGG - chr3_3:76071360-76071379 None:intergenic 20.0%
!!! GTAAATGTATTTGACAATTT+TGG + chr3_3:76071545-76071564 Msa0473450:intron 20.0%
!! TGAACATTAAATACAGATAA+AGG - chr3_3:76072185-76072204 None:intergenic 20.0%
!! AAATTAAAACAGAATACATC+AGG - chr3_3:76072841-76072860 None:intergenic 20.0%
!!! TGATGTATTCTGTTTTAATT+TGG + chr3_3:76072840-76072859 Msa0473450:intron 20.0%
!!! CCATATTTTACTTTTTGAAA+GGG - chr3_3:76072952-76072971 None:intergenic 20.0%
!!! TCCATATTTTACTTTTTGAA+AGG - chr3_3:76072953-76072972 None:intergenic 20.0%
!! TAAATTATACCCTCAAAATT+AGG - chr3_3:76073365-76073384 None:intergenic 20.0%
!! TTGAATCATTCAATGAAAAA+TGG - chr3_3:76073424-76073443 None:intergenic 20.0%
!! CATGTTTGTTTATTGTTATA+GGG + chr3_3:76073527-76073546 Msa0473450:intron 20.0%
!! TGAAAATTTGCAGTATTATT+TGG + chr3_3:76073570-76073589 Msa0473450:intron 20.0%
! AACAATAAACAATCTAACAC+CGG + chr3_3:76068703-76068722 Msa0473450:CDS 25.0%
!!! ATTTATGAGTGCTTTTAAAG+AGG + chr3_3:76068999-76069018 Msa0473450:CDS 25.0%
! AGTATATTGTGTATGTGTAT+AGG + chr3_3:76069312-76069331 Msa0473450:intron 25.0%
! AATCTAGTTGTTGTCTAAAA+GGG - chr3_3:76069530-76069549 None:intergenic 25.0%
! AAATCTAGTTGTTGTCTAAA+AGG - chr3_3:76069531-76069550 None:intergenic 25.0%
!!! ATCATTTAAAAATAACGGAC+GGG - chr3_3:76069614-76069633 None:intergenic 25.0%
! TCAACTATGTACAAAAATTG+TGG + chr3_3:76069936-76069955 Msa0473450:CDS 25.0%
! TTCTCAGTATATTCTTTCAA+AGG + chr3_3:76069999-76070018 Msa0473450:CDS 25.0%
!!! AGTCAAAAGTACTCATTAAA+TGG + chr3_3:76070204-76070223 Msa0473450:intron 25.0%
!!! GTCAAAAGTACTCATTAAAT+GGG + chr3_3:76070205-76070224 Msa0473450:intron 25.0%
!! ATCTCAATCCTTATGATTTT+GGG - chr3_3:76070246-76070265 None:intergenic 25.0%
!! AATCTCAATCCTTATGATTT+TGG - chr3_3:76070247-76070266 None:intergenic 25.0%
! TTATATATCTAGTGCTATGA+TGG + chr3_3:76070274-76070293 Msa0473450:intron 25.0%
! CTTAAACTTTGTTAGACATA+TGG - chr3_3:76070300-76070319 None:intergenic 25.0%
! ACTTAAATAACCCAAAAATG+CGG + chr3_3:76070337-76070356 Msa0473450:intron 25.0%
!!! AGCTTATTTCTATGATTGAA+TGG + chr3_3:76071236-76071255 Msa0473450:intron 25.0%
! TTAAGAAACAGGAACTAAAA+TGG + chr3_3:76071451-76071470 Msa0473450:intron 25.0%
! TATATGCATTTAGTGAGAAA+GGG - chr3_3:76071994-76072013 None:intergenic 25.0%
! TTATATGCATTTAGTGAGAA+AGG - chr3_3:76071995-76072014 None:intergenic 25.0%
! CATATAATGCAACACTATTA+GGG + chr3_3:76072008-76072027 Msa0473450:intron 25.0%
! ATATAATGCAACACTATTAG+GGG + chr3_3:76072009-76072028 Msa0473450:intron 25.0%
!! ATATTGTTCCATGTTTTACT+AGG + chr3_3:76072035-76072054 Msa0473450:intron 25.0%
! GGTAAGAAAAAAAAATGAGA+CGG - chr3_3:76072164-76072183 None:intergenic 25.0%
! AAAGAAAATATTAGGCTGAT+GGG - chr3_3:76072214-76072233 None:intergenic 25.0%
! AAAAGAAAATATTAGGCTGA+TGG - chr3_3:76072215-76072234 None:intergenic 25.0%
! TGATTTATAATTCTTCTACC+AGG + chr3_3:76072276-76072295 Msa0473450:intron 25.0%
! CATGTAATACTAATGATCAA+TGG - chr3_3:76072571-76072590 None:intergenic 25.0%
!!! GTATTACATGTGTTTTTTGT+TGG + chr3_3:76072581-76072600 Msa0473450:intron 25.0%
! TTAAGAAAATTGAGGAATGA+GGG - chr3_3:76072673-76072692 None:intergenic 25.0%
! AATAAAGTGAAGAAATCTGA+GGG - chr3_3:76072794-76072813 None:intergenic 25.0%
! AAATAAAGTGAAGAAATCTG+AGG - chr3_3:76072795-76072814 None:intergenic 25.0%
! TCAGATTTCTTCACTTTATT+TGG + chr3_3:76072794-76072813 Msa0473450:intron 25.0%
!! CAGATTTCTTCACTTTATTT+GGG + chr3_3:76072795-76072814 Msa0473450:intron 25.0%
! ATGTAAAATTCCTATCACAA+AGG - chr3_3:76072868-76072887 None:intergenic 25.0%
!!! TTTTTTTTCAACAGCATATC+TGG + chr3_3:76072903-76072922 Msa0473450:intron 25.0%
! CCCTTTCAAAAAGTAAAATA+TGG + chr3_3:76072949-76072968 Msa0473450:intron 25.0%
! AAATAACTTAGACGATCAAA+AGG + chr3_3:76073114-76073133 Msa0473450:intron 25.0%
! TGAATGATTCAATAGACATA+TGG + chr3_3:76073432-76073451 Msa0473450:intron 25.0%
! AACAATAAACAAACATGCAT+TGG - chr3_3:76073524-76073543 None:intergenic 25.0%
! GCATGTTTGTTTATTGTTAT+AGG + chr3_3:76073526-76073545 Msa0473450:intron 25.0%
! TTAGATTTATTCACCAAATG+AGG + chr3_3:76073920-76073939 Msa0473450:three_prime_UTR 25.0%
! TAGATTTATTCACCAAATGA+GGG + chr3_3:76073921-76073940 Msa0473450:three_prime_UTR 25.0%
! TGAGACATGATATATACAAA+AGG - chr3_3:76073984-76074003 None:intergenic 25.0%
! TTGTATATATCATGTCTCAA+TGG + chr3_3:76073985-76074004 Msa0473450:three_prime_UTR 25.0%
GAAAGTTAGCTCAAAAACAT+TGG + chr3_3:76068309-76068328 Msa0473450:five_prime_UTR 30.0%
! TTTGAAGTGAAGAATCGATT+GGG - chr3_3:76068568-76068587 None:intergenic 30.0%
!!! TTTTGAAGTGAAGAATCGAT+TGG - chr3_3:76068569-76068588 None:intergenic 30.0%
!! AAAAACTTACAAAGGTGTCA+CGG + chr3_3:76068768-76068787 Msa0473450:CDS 30.0%
!!! GGTTTTGAAAGAGGTTAATT+GGG + chr3_3:76068789-76068808 Msa0473450:CDS 30.0%
GTTAATTGGGAAGTGAAAAA+GGG + chr3_3:76068802-76068821 Msa0473450:CDS 30.0%
! TGTTAATGATTTGGAGTTGA+TGG + chr3_3:76069074-76069093 Msa0473450:CDS 30.0%
! GTTAATGATTTGGAGTTGAT+GGG + chr3_3:76069075-76069094 Msa0473450:CDS 30.0%
!! TTAATGATTTGGAGTTGATG+GGG + chr3_3:76069076-76069095 Msa0473450:CDS 30.0%
! CAATTTTCTCAAATCAGTGT+CGG - chr3_3:76069387-76069406 None:intergenic 30.0%
!! ATAACCAATGTTACTTTGCA+AGG + chr3_3:76069695-76069714 Msa0473450:intron 30.0%
!!! GACACTTTGTTTTCAATTTC+AGG + chr3_3:76069783-76069802 Msa0473450:intron 30.0%
TCATCTAACAACAACAAATC+TGG - chr3_3:76069811-76069830 None:intergenic 30.0%
TGAAGATTATCTTAACAAGC+AGG + chr3_3:76069870-76069889 Msa0473450:CDS 30.0%
AAAAATTGTGGAAACTGACA+TGG + chr3_3:76069948-76069967 Msa0473450:CDS 30.0%
AAAATTGTGGAAACTGACAT+GGG + chr3_3:76069949-76069968 Msa0473450:CDS 30.0%
TCTGTTGTCACATATACATA+AGG - chr3_3:76070470-76070489 None:intergenic 30.0%
GTATATGTGACAACAGAAAT+TGG + chr3_3:76070473-76070492 Msa0473450:intron 30.0%
TTCATTTGTTTCCGTTCAAA+TGG - chr3_3:76070531-76070550 None:intergenic 30.0%
AACGGAAACAAATGAAAATC+AGG + chr3_3:76070535-76070554 Msa0473450:CDS 30.0%
AGGCAAATCTTACAATTGAA+AGG + chr3_3:76070723-76070742 Msa0473450:CDS 30.0%
GGCAAATCTTACAATTGAAA+GGG + chr3_3:76070724-76070743 Msa0473450:CDS 30.0%
GCAAATCTTACAATTGAAAG+GGG + chr3_3:76070725-76070744 Msa0473450:CDS 30.0%
TTGACTGAGAAAATGCTATT+TGG + chr3_3:76070900-76070919 Msa0473450:intron 30.0%
ACGATATTAAAGGACTTCTT+GGG + chr3_3:76071061-76071080 Msa0473450:CDS 30.0%
! AGCAATATCATCTAATTTGC+GGG - chr3_3:76071329-76071348 None:intergenic 30.0%
CAGCAATATCATCTAATTTG+CGG - chr3_3:76071330-76071349 None:intergenic 30.0%
AACAAACAACCACATTTCAA+AGG - chr3_3:76071391-76071410 None:intergenic 30.0%
!! GATTCTTCTTCAACTTGTTT+TGG + chr3_3:76071523-76071542 Msa0473450:intron 30.0%
TCCTAATAAAAAGGGAAATG+TGG + chr3_3:76071668-76071687 Msa0473450:intron 30.0%
! ACCACATTTCCCTTTTTATT+AGG - chr3_3:76071672-76071691 None:intergenic 30.0%
AAACTATTTACATGCTTCCA+TGG + chr3_3:76071919-76071938 Msa0473450:intron 30.0%
GCATATAATGCAACACTATT+AGG + chr3_3:76072007-76072026 Msa0473450:intron 30.0%
TTTATAATTCTTCTACCAGG+AGG + chr3_3:76072279-76072298 Msa0473450:intron 30.0%
AGAGTGATTGAAGTTAAAGA+TGG + chr3_3:76072373-76072392 Msa0473450:CDS 30.0%
!!! TGTGTTTTTTGTTGGATTCT+TGG + chr3_3:76072589-76072608 Msa0473450:intron 30.0%
AATCATCATTTGCATCTAGA+TGG - chr3_3:76072635-76072654 None:intergenic 30.0%
! CTAGATGCAAATGATGATTT+TGG + chr3_3:76072636-76072655 Msa0473450:intron 30.0%
GTTAAGAAAATTGAGGAATG+AGG - chr3_3:76072674-76072693 None:intergenic 30.0%
AAAACAGAATACATCAGGTA+GGG - chr3_3:76072836-76072855 None:intergenic 30.0%
TAAAACAGAATACATCAGGT+AGG - chr3_3:76072837-76072856 None:intergenic 30.0%
! TAATTTGGTTCCTTTGTGAT+AGG + chr3_3:76072855-76072874 Msa0473450:intron 30.0%
TCAGTCTTTCATTTCATAAG+TGG + chr3_3:76073018-76073037 Msa0473450:intron 30.0%
TCTTTCATTTCATAAGTGGA+AGG + chr3_3:76073022-76073041 Msa0473450:intron 30.0%
TTTCATAAGTGGAAGGATAT+AGG + chr3_3:76073029-76073048 Msa0473450:intron 30.0%
CATTCAATGAAAAATGGCTT+CGG - chr3_3:76073418-76073437 None:intergenic 30.0%
!! TTGGATTTGGCTTTCAATTT+AGG - chr3_3:76073658-76073677 None:intergenic 30.0%
AAACTTCTGTGAAACTCATA+TGG + chr3_3:76073690-76073709 Msa0473450:intron 30.0%
AAAATTGTTCTCCTCATGTA+TGG - chr3_3:76073902-76073921 None:intergenic 30.0%
AGATTTATTCACCAAATGAG+GGG + chr3_3:76073922-76073941 Msa0473450:three_prime_UTR 30.0%
ATTATAGCATTTGTGATTCC+TGG + chr3_3:76074051-76074070 Msa0473450:three_prime_UTR 30.0%
!! GTTTTTGAGCTAACTTTCTG+CGG - chr3_3:76068307-76068326 None:intergenic 35.0%
AGTTAGCTCAAAAACATTGG+TGG + chr3_3:76068312-76068331 Msa0473450:five_prime_UTR 35.0%
GTTAGCTCAAAAACATTGGT+GGG + chr3_3:76068313-76068332 Msa0473450:five_prime_UTR 35.0%
TTAGCTCAAAAACATTGGTG+GGG + chr3_3:76068314-76068333 Msa0473450:five_prime_UTR 35.0%
TTGAAGTGAAGAATCGATTG+GGG - chr3_3:76068567-76068586 None:intergenic 35.0%
!!! CGGTTTTGAAAGAGGTTAAT+TGG + chr3_3:76068788-76068807 Msa0473450:CDS 35.0%
GGTTAATTGGGAAGTGAAAA+AGG + chr3_3:76068801-76068820 Msa0473450:CDS 35.0%
! TTTAGTTGGTGTAAATGGTG+CGG + chr3_3:76068837-76068856 Msa0473450:CDS 35.0%
!!! GAAAATTGCGTTTTTGAGTC+AGG + chr3_3:76068939-76068958 Msa0473450:CDS 35.0%
!!! GTTTTTGAGTCAGGAATTTG+AGG + chr3_3:76068948-76068967 Msa0473450:CDS 35.0%
!! GAGTGCTTTTAAAGAGGAAA+TGG + chr3_3:76069005-76069024 Msa0473450:CDS 35.0%
!! TGCTTTTAAAGAGGAAATGG+AGG + chr3_3:76069008-76069027 Msa0473450:CDS 35.0%
TATATCAGCATTACAGCCTA+TGG - chr3_3:76069678-76069697 None:intergenic 35.0%
TACACCTTGCAAAGTAACAT+TGG - chr3_3:76069702-76069721 None:intergenic 35.0%
! GAGTTTGAATGTGAAAGTGT+TGG + chr3_3:76069750-76069769 Msa0473450:intron 35.0%
! TCAAGATCAAGGTGATTTGT+AGG - chr3_3:76069835-76069854 None:intergenic 35.0%
ACTCAATTGTGTCAAGATCA+AGG - chr3_3:76069846-76069865 None:intergenic 35.0%
TTGATCTTGACACAATTGAG+TGG + chr3_3:76069845-76069864 Msa0473450:CDS 35.0%
TCGTGAGAAATGATAACCAT+CGG - chr3_3:76069901-76069920 None:intergenic 35.0%
ATAATTTCCCTCAAATGTCC+TGG - chr3_3:76069980-76069999 None:intergenic 35.0%
ATATTCTTTCAAAGGCGACT+TGG + chr3_3:76070007-76070026 Msa0473450:CDS 35.0%
!! AAACAAGAGAGTTGATAAGC+AGG + chr3_3:76070079-76070098 Msa0473450:CDS 35.0%
!! CCTTATGATTTTGGGAGAAT+TGG - chr3_3:76070238-76070257 None:intergenic 35.0%
CCAATTCTCCCAAAATCATA+AGG + chr3_3:76070235-76070254 Msa0473450:intron 35.0%
! AACACTACTACCGCATTTTT+GGG - chr3_3:76070350-76070369 None:intergenic 35.0%
CAGAAATTGGAAAGACTTCT+TGG + chr3_3:76070486-76070505 Msa0473450:intron 35.0%
TAGTAGAGAAGCCATTTGAA+CGG + chr3_3:76070517-76070536 Msa0473450:CDS 35.0%
GAAGATCTGTTGTAACAGTT+AGG + chr3_3:76070580-76070599 Msa0473450:CDS 35.0%
TGTTGTAACAGTTAGGAACT+TGG + chr3_3:76070587-76070606 Msa0473450:CDS 35.0%
! ACAGTTAGGAACTTGGATTT+TGG + chr3_3:76070594-76070613 Msa0473450:CDS 35.0%
! TTGCCTTGTTGAAAAGTTTC+TGG - chr3_3:76070709-76070728 None:intergenic 35.0%
GGAGAAAAAATTGCCATTCT+TGG + chr3_3:76070746-76070765 Msa0473450:CDS 35.0%
TGATTCTGCTCGAAATAGTT+AGG - chr3_3:76070869-76070888 None:intergenic 35.0%
TAACTATTTCGAGCAGAATC+AGG + chr3_3:76070868-76070887 Msa0473450:CDS 35.0%
!! AAAATGCTATTTGGTGCCAT+CGG + chr3_3:76070909-76070928 Msa0473450:intron 35.0%
AAATGAAGAATTGGAACCGA+TGG - chr3_3:76070928-76070947 None:intergenic 35.0%
GACGATATTAAAGGACTTCT+TGG + chr3_3:76071060-76071079 Msa0473450:CDS 35.0%
CGTAAAGTTTCTCTATTGAG+TGG + chr3_3:76071114-76071133 Msa0473450:CDS 35.0%
AAAGTTTCTCTATTGAGTGG+TGG + chr3_3:76071117-76071136 Msa0473450:CDS 35.0%
!!! TTTTGCTCTCCTTTGAAATG+TGG + chr3_3:76071379-76071398 Msa0473450:intron 35.0%
! ATGGCTATGATGATGTTAAG+AGG + chr3_3:76071470-76071489 Msa0473450:intron 35.0%
ATCCATACACTTGCATTCTT+TGG + chr3_3:76071573-76071592 Msa0473450:intron 35.0%
TCCATACACTTGCATTCTTT+GGG + chr3_3:76071574-76071593 Msa0473450:intron 35.0%
! ACCATCAACTCTACTTGTTT+TGG + chr3_3:76072089-76072108 Msa0473450:CDS 35.0%
TCCAAAACAAGTAGAGTTGA+TGG - chr3_3:76072093-76072112 None:intergenic 35.0%
! ACCTTCTAAAGAAATGCTTG+AGG + chr3_3:76072137-76072156 Msa0473450:CDS 35.0%
ACCTCAAGCATTTCTTTAGA+AGG - chr3_3:76072141-76072160 None:intergenic 35.0%
AATCAATATTAGTCGGTCCT+TGG - chr3_3:76072261-76072280 None:intergenic 35.0%
ATCATGAGATACGGTGATAA+CGG - chr3_3:76072326-76072345 None:intergenic 35.0%
TTATCACCGTATCTCATGAT+CGG + chr3_3:76072326-76072345 Msa0473450:CDS 35.0%
!! AAAGTACCGATCATGAGATA+CGG - chr3_3:76072335-76072354 None:intergenic 35.0%
ATGGGACACAAAAAAGCTAA+TGG - chr3_3:76072457-76072476 None:intergenic 35.0%
GCGGATAGTTAAGAAAATTG+AGG - chr3_3:76072681-76072700 None:intergenic 35.0%
TCAGGTAGGGACTAATAATT+TGG - chr3_3:76072823-76072842 None:intergenic 35.0%
TAATGAAGTGAACAGTCTTG+TGG + chr3_3:76072977-76072996 Msa0473450:intron 35.0%
!!! ACTTAGTTTTGACACTTGAG+AGG + chr3_3:76073145-76073164 Msa0473450:intron 35.0%
!!! CTTAGTTTTGACACTTGAGA+GGG + chr3_3:76073146-76073165 Msa0473450:intron 35.0%
! TTGCTATTAAGCTCTCTTAG+TGG + chr3_3:76073211-76073230 Msa0473450:intron 35.0%
GTTCATAATCTAAGTTGCAC+TGG + chr3_3:76073300-76073319 Msa0473450:intron 35.0%
!! ATGTGTTCCATTTTTCGTCA+AGG + chr3_3:76073325-76073344 Msa0473450:intron 35.0%
! ATGACGGTTACCTAATTTTG+AGG + chr3_3:76073352-76073371 Msa0473450:intron 35.0%
! TGACGGTTACCTAATTTTGA+GGG + chr3_3:76073353-76073372 Msa0473450:intron 35.0%
TCACGAAGTTACTATCAACA+TGG - chr3_3:76073388-76073407 None:intergenic 35.0%
TACCTTTGACATCTTGGATT+TGG - chr3_3:76073671-76073690 None:intergenic 35.0%
GAAGTTTACCTTTGACATCT+TGG - chr3_3:76073677-76073696 None:intergenic 35.0%
CAAGCAAAACAGAAGTCTAA+AGG + chr3_3:76073830-76073849 Msa0473450:CDS 35.0%
GTGCAAAGAATTCAAAGAGA+TGG + chr3_3:76073852-76073871 Msa0473450:CDS 35.0%
! TCATGTATGGTGTAATGGAA+TGG - chr3_3:76073889-76073908 None:intergenic 35.0%
ATTCCATTACACCATACATG+AGG + chr3_3:76073888-76073907 Msa0473450:three_prime_UTR 35.0%
GATTTATTCACCAAATGAGG+GGG + chr3_3:76073923-76073942 Msa0473450:three_prime_UTR 35.0%
TTACAGTCTCAACAACAACT+TGG + chr3_3:76074080-76074099 Msa0473450:three_prime_UTR 35.0%
AAATAGCATTAAGACCACAG+CGG - chr3_3:76074171-76074190 None:intergenic 35.0%
GTTGCTTACTCGTATTTCAT+GGG - chr3_3:76074200-76074219 None:intergenic 35.0%
AGTTGCTTACTCGTATTTCA+TGG - chr3_3:76074201-76074220 None:intergenic 35.0%
!! TTTTACCCAGAAGAAGTGTG+AGG - chr3_3:76068369-76068388 None:intergenic 40.0%
TGAATCGAGAATGAATGCTC+CGG - chr3_3:76068473-76068492 None:intergenic 40.0%
!! GTGTTAGTGTTGAAGGTGTT+GGG - chr3_3:76068541-76068560 None:intergenic 40.0%
! AGTGTTAGTGTTGAAGGTGT+TGG - chr3_3:76068542-76068561 None:intergenic 40.0%
! TCGTTCATCGACTGAAGTAT+CGG - chr3_3:76068677-76068696 None:intergenic 40.0%
AGTGAAAAAGGGTGAGAAAG+TGG + chr3_3:76068813-76068832 Msa0473450:CDS 40.0%
GTGAAAAAGGGTGAGAAAGT+GGG + chr3_3:76068814-76068833 Msa0473450:CDS 40.0%
! GTGGGTTTAGTTGGTGTAAA+TGG + chr3_3:76068832-76068851 Msa0473450:CDS 40.0%
! TTAGTTGGTGTAAATGGTGC+GGG + chr3_3:76068838-76068857 Msa0473450:CDS 40.0%
GATGAGGATTATTGCAGGTT+TGG + chr3_3:76068873-76068892 Msa0473450:CDS 40.0%
TTAATCACATTCCCCGAATC+CGG - chr3_3:76068904-76068923 None:intergenic 40.0%
! AATTTGAGGTTTCGCAGAGT+AGG + chr3_3:76068962-76068981 Msa0473450:CDS 40.0%
TAAAGAGGAAATGGAGGTTG+CGG + chr3_3:76069014-76069033 Msa0473450:CDS 40.0%
! GAAATTGGAGAAAGTGCAGA+AGG + chr3_3:76069038-76069057 Msa0473450:CDS 40.0%
TGAGGGCTCTGTTAATGATT+TGG + chr3_3:76069065-76069084 Msa0473450:CDS 40.0%
TTGGTGTAGAGGATTCTGAT+AGG + chr3_3:76069199-76069218 Msa0473450:CDS 40.0%
TGTAGAGGATTCTGATAGGT+TGG + chr3_3:76069203-76069222 Msa0473450:CDS 40.0%
!! AGGTTGGTTGCTTCTTTTAG+TGG + chr3_3:76069219-76069238 Msa0473450:CDS 40.0%
! TTGGTTGCTTCTTTTAGTGG+TGG + chr3_3:76069222-76069241 Msa0473450:CDS 40.0%
!! TTGCTTCTTTTAGTGGTGGA+TGG + chr3_3:76069226-76069245 Msa0473450:CDS 40.0%
! TCTTGGCAAGATTTTGCTTC+AGG + chr3_3:76069263-76069282 Msa0473450:CDS 40.0%
CAACATGTTAGTGTCGTGAT+CGG - chr3_3:76069361-76069380 None:intergenic 40.0%
AGATTGGACGTGTCTTCAAT+TGG + chr3_3:76069459-76069478 Msa0473450:CDS 40.0%
!! CTTCAATTGGAAGTGTCTAG+TGG + chr3_3:76069472-76069491 Msa0473450:CDS 40.0%
TGGTGGTATTGCAAATTGCA+TGG + chr3_3:76069492-76069511 Msa0473450:CDS 40.0%
! ATCAATAAAGGGCACACCTT+AGG + chr3_3:76069636-76069655 Msa0473450:intron 40.0%
TACAGCCTATGGTTAACCAT+AGG - chr3_3:76069667-76069686 None:intergenic 40.0%
TTGAAACACAGTATGCTGCA+TGG + chr3_3:76070031-76070050 Msa0473450:CDS 40.0%
TGAAACACAGTATGCTGCAT+GGG + chr3_3:76070032-76070051 Msa0473450:CDS 40.0%
!! AGAGAGTTGATAAGCAGGTT+AGG + chr3_3:76070084-76070103 Msa0473450:CDS 40.0%
! CAACACTACTACCGCATTTT+TGG - chr3_3:76070351-76070370 None:intergenic 40.0%
ATTGGAAAGACTTCTTGGAG+AGG + chr3_3:76070491-76070510 Msa0473450:CDS 40.0%
!!! GAACTTGGATTTTGGCTTTG+AGG + chr3_3:76070602-76070621 Msa0473450:CDS 40.0%
! GTGCCAGAAACTTTTCAACA+AGG + chr3_3:76070703-76070722 Msa0473450:intron 40.0%
ATTGCCATTCTTGGTCCAAA+TGG + chr3_3:76070755-76070774 Msa0473450:CDS 40.0%
ACATCCATTTGGACCAAGAA+TGG - chr3_3:76070762-76070781 None:intergenic 40.0%
ATTCTTGGTCCAAATGGATG+TGG + chr3_3:76070761-76070780 Msa0473450:CDS 40.0%
!! GCTGACTTGATTTAGTCAAC+AGG + chr3_3:76070969-76070988 Msa0473450:intron 40.0%
TTGATTTAGTCAACAGGCTG+AGG + chr3_3:76070975-76070994 Msa0473450:intron 40.0%
TGGAGGAGTGACGATATTAA+AGG + chr3_3:76071051-76071070 Msa0473450:CDS 40.0%
ATCAACCATCTCAATGTTCG+AGG - chr3_3:76071506-76071525 None:intergenic 40.0%
!! AAGGGAAATGTGGTGCTATT+AGG + chr3_3:76071678-76071697 Msa0473450:intron 40.0%
AGAGATGAGAGGTAAAACAG+AGG - chr3_3:76071757-76071776 None:intergenic 40.0%
! GTTCCATGTTTTACTAGGCA+CGG + chr3_3:76072040-76072059 Msa0473450:intron 40.0%
!!! GCTGGCTTTTTGCAAATTCA+TGG + chr3_3:76072062-76072081 Msa0473450:CDS 40.0%
GGTATATCCAAGTGATTCGT+TGG - chr3_3:76072120-76072139 None:intergenic 40.0%
AAAACTCTGTATCCGATCCA+AGG + chr3_3:76072241-76072260 Msa0473450:intron 40.0%
ATATTAGTCGGTCCTTGGAT+CGG - chr3_3:76072256-76072275 None:intergenic 40.0%
GAGGCAATAAATGAGTACGA+GGG + chr3_3:76072298-76072317 Msa0473450:CDS 40.0%
ACACAAAAAAGCTAATGGCG+GGG - chr3_3:76072452-76072471 None:intergenic 40.0%
GACACAAAAAAGCTAATGGC+GGG - chr3_3:76072453-76072472 None:intergenic 40.0%
GGACACAAAAAAGCTAATGG+CGG - chr3_3:76072454-76072473 None:intergenic 40.0%
GATTCAGAGATAGTTGAAGC+AGG + chr3_3:76072505-76072524 Msa0473450:intron 40.0%
GATAGTTGAAGCAGGTTAAC+TGG + chr3_3:76072513-76072532 Msa0473450:intron 40.0%
ATGAACAAGATCGCCAAGAA+GGG - chr3_3:76072710-76072729 None:intergenic 40.0%
TATTAAGCTCTCTTAGTGGC+AGG + chr3_3:76073215-76073234 Msa0473450:intron 40.0%
CATACAGCCTTGACGAAAAA+TGG - chr3_3:76073335-76073354 None:intergenic 40.0%
! TTTTCGTCAAGGCTGTATGA+CGG + chr3_3:76073336-76073355 Msa0473450:intron 40.0%
! AGACATATGGTGATGCTGTA+AGG + chr3_3:76073445-76073464 Msa0473450:intron 40.0%
! GACATATGGTGATGCTGTAA+GGG + chr3_3:76073446-76073465 Msa0473450:intron 40.0%
AGCCAAATCCAAGATGTCAA+AGG + chr3_3:76073666-76073685 Msa0473450:CDS 40.0%
CTGTGAAACTCATATGGATG+AGG + chr3_3:76073696-76073715 Msa0473450:intron 40.0%
AAGGAAGAAGCAAAAGATGC+AGG + chr3_3:76073799-76073818 Msa0473450:CDS 40.0%
!! CTTCTGTTTTGCTTGCTGAA+AGG - chr3_3:76073825-76073844 None:intergenic 40.0%
TCTCCTCATGTATGGTGTAA+TGG - chr3_3:76073894-76073913 None:intergenic 40.0%
TTGAGACTGTAAACTTCACC+AGG - chr3_3:76074072-76074091 None:intergenic 40.0%
TATGTGTGTCACAAAACGAC+TGG - chr3_3:76074236-76074255 None:intergenic 40.0%
AGAAGATTGTGTGGCGGTTA+TGG - chr3_3:76068399-76068418 None:intergenic 45.0%
ATGGTCAGAAGATTGTGTGG+CGG - chr3_3:76068405-76068424 None:intergenic 45.0%
TGGATGGTCAGAAGATTGTG+TGG - chr3_3:76068408-76068427 None:intergenic 45.0%
CTTCTGACCATCCAACACAA+TGG + chr3_3:76068414-76068433 Msa0473450:exon 45.0%
ACCATCCAACACAATGGAGT+TGG + chr3_3:76068420-76068439 Msa0473450:exon 45.0%
GATGAGATGAGTGTGGGATA+GGG - chr3_3:76068512-76068531 None:intergenic 45.0%
TTTGGCGATGAGATGAGTGT+GGG - chr3_3:76068518-76068537 None:intergenic 45.0%
!! AGTGTTGAAGGTGTTGGGTT+TGG - chr3_3:76068536-76068555 None:intergenic 45.0%
! GGGGTTAGTGTTAGTGTTGA+AGG - chr3_3:76068548-76068567 None:intergenic 45.0%
AGCTACTGAAGTTTCGTCCA+CGG - chr3_3:76068629-76068648 None:intergenic 45.0%
!!! AGGTGTCACGGTTTTGAAAG+AGG + chr3_3:76068780-76068799 Msa0473450:CDS 45.0%
! GGTGAGAAAGTGGGTTTAGT+TGG + chr3_3:76068823-76068842 Msa0473450:CDS 45.0%
ACGCAGATGAGGATTATTGC+AGG + chr3_3:76068868-76068887 Msa0473450:CDS 45.0%
GAGGATTATTGCAGGTTTGG+AGG + chr3_3:76068876-76068895 Msa0473450:CDS 45.0%
TATTGCAGGTTTGGAGGAAC+CGG + chr3_3:76068882-76068901 Msa0473450:CDS 45.0%
AAAGAGGAAATGGAGGTTGC+GGG + chr3_3:76069015-76069034 Msa0473450:CDS 45.0%
!! ATGATTTGGAGTTGATGGGG+AGG + chr3_3:76069079-76069098 Msa0473450:CDS 45.0%
!! AGTAAGTTGATGCCTGAGCT+TGG + chr3_3:76069174-76069193 Msa0473450:CDS 45.0%
! TTGATGCCTGAGCTTGGTTT+TGG + chr3_3:76069180-76069199 Msa0473450:CDS 45.0%
TCTACACCAAAACCAAGCTC+AGG - chr3_3:76069189-76069208 None:intergenic 45.0%
!!! TGAGCTTGGTTTTGGTGTAG+AGG + chr3_3:76069188-76069207 Msa0473450:CDS 45.0%
! TGTCAGTGTCGAGTCTGTAT+TGG + chr3_3:76069436-76069455 Msa0473450:intron 45.0%
GTCGAGTCTGTATTGGAGAT+TGG + chr3_3:76069443-76069462 Msa0473450:CDS 45.0%
!! CAATTGGAAGTGTCTAGTGG+TGG + chr3_3:76069475-76069494 Msa0473450:CDS 45.0%
TTAACCATAGGTGCAGCCTA+AGG - chr3_3:76069655-76069674 None:intergenic 45.0%
CTGCACCTATGGTTAACCAT+AGG + chr3_3:76069659-76069678 Msa0473450:intron 45.0%
AAACTGACATGGGTGTATCC+AGG + chr3_3:76069959-76069978 Msa0473450:CDS 45.0%
GGTGTATCCAGGACATTTGA+GGG + chr3_3:76069970-76069989 Msa0473450:CDS 45.0%
TTGATAAGCAGGTTAGGTGC+CGG + chr3_3:76070090-76070109 Msa0473450:CDS 45.0%
! GACTGCTGAGAAGGTATATG+TGG + chr3_3:76070134-76070153 Msa0473450:intron 45.0%
GTACTCTTGCCACATCCATT+TGG - chr3_3:76070773-76070792 None:intergenic 45.0%
GGTTTAGAGAAGCCAATCAG+CGG + chr3_3:76070812-76070831 Msa0473450:CDS 45.0%
AGGATAACTTCACCGCTGAT+TGG - chr3_3:76070827-76070846 None:intergenic 45.0%
ATCAGCGGTGAAGTTATCCT+TGG + chr3_3:76070827-76070846 Msa0473450:CDS 45.0%
TCAGCGGTGAAGTTATCCTT+GGG + chr3_3:76070828-76070847 Msa0473450:CDS 45.0%
GCAATACATTATGCTCCCCA+AGG - chr3_3:76070847-76070866 None:intergenic 45.0%
GGCACTTGATCTGGAAAAGA+CGG + chr3_3:76070996-76071015 Msa0473450:CDS 45.0%
! TCTATTGAGTGGTGGTGAGA+AGG + chr3_3:76071125-76071144 Msa0473450:CDS 45.0%
GCGGGTAAAGAAGCAATTCT+CGG - chr3_3:76071311-76071330 None:intergenic 45.0%
TCCAACCTCGAACATTGAGA+TGG + chr3_3:76071498-76071517 Msa0473450:intron 45.0%
ACCATCTCAATGTTCGAGGT+TGG - chr3_3:76071502-76071521 None:intergenic 45.0%
GCCCAAAGAATGCAAGTGTA+TGG - chr3_3:76071578-76071597 None:intergenic 45.0%
! GTGCTATTAGGTTCTCACCA+TGG + chr3_3:76071690-76071709 Msa0473450:intron 45.0%
TATTAGGTTCTCACCATGGC+AGG + chr3_3:76071694-76071713 Msa0473450:intron 45.0%
ATTAGGTTCTCACCATGGCA+GGG + chr3_3:76071695-76071714 Msa0473450:intron 45.0%
CATGCTTCCATGGTACTCTT+CGG + chr3_3:76071929-76071948 Msa0473450:intron 45.0%
!! GTTGTATCCGAAGAGTACCA+TGG - chr3_3:76071939-76071958 None:intergenic 45.0%
GGATGAACCAACGAATCACT+TGG + chr3_3:76072110-76072129 Msa0473450:CDS 45.0%
CGTACTCATTTATTGCCTCC+TGG - chr3_3:76072297-76072316 None:intergenic 45.0%
GGAGGCAATAAATGAGTACG+AGG + chr3_3:76072297-76072316 Msa0473450:intron 45.0%
AGTTAAAGATGGCACTGTGC+AGG + chr3_3:76072384-76072403 Msa0473450:CDS 45.0%
! AAAAAAGCTAATGGCGGGGA+GGG - chr3_3:76072448-76072467 None:intergenic 45.0%
TGAACAAGATCGCCAAGAAG+GGG - chr3_3:76072709-76072728 None:intergenic 45.0%
GATGAACAAGATCGCCAAGA+AGG - chr3_3:76072711-76072730 None:intergenic 45.0%
TGATAGCAAATACGCCTGTG+AGG + chr3_3:76073078-76073097 Msa0473450:intron 45.0%
GATAGCAAATACGCCTGTGA+GGG + chr3_3:76073079-76073098 Msa0473450:intron 45.0%
! TAGTCCTTTTGATCCCTCAC+AGG - chr3_3:76073095-76073114 None:intergenic 45.0%
GAGAGCTTAATAGCAACAGC+TGG - chr3_3:76073207-76073226 None:intergenic 45.0%
TCTCTTAGTGGCAGGATTCA+GGG + chr3_3:76073223-76073242 Msa0473450:intron 45.0%
TGGAGAAGAATCTTGATGCC+AGG + chr3_3:76073590-76073609 Msa0473450:CDS 45.0%
GGAGAAGAATCTTGATGCCA+GGG + chr3_3:76073591-76073610 Msa0473450:CDS 45.0%
ATCAGGCTGAGAAAGAAGCA+AGG + chr3_3:76073780-76073799 Msa0473450:intron 45.0%
AAACACATTAGCATCCGCTG+TGG + chr3_3:76074154-76074173 Msa0473450:three_prime_UTR 45.0%
ATACGAGTAAGCAACTGACG+TGG + chr3_3:76074205-76074224 Msa0473450:three_prime_UTR 45.0%
!!! TTTTTTTTTTACTAAAATTA+AGG + chr3_3:76073179-76073198 Msa0473450:intron 5.0%
!!! TTTTTTTTTACTAAAATTAA+GGG + chr3_3:76073180-76073199 Msa0473450:intron 5.0%
TCTCTGCCTCACACTTCTTC+TGG + chr3_3:76068360-76068379 Msa0473450:five_prime_UTR 50.0%
CTCTGCCTCACACTTCTTCT+GGG + chr3_3:76068361-76068380 Msa0473450:five_prime_UTR 50.0%
GCCAACTCCATTGTGTTGGA+TGG - chr3_3:76068424-76068443 None:intergenic 50.0%
TGAGGCCAACTCCATTGTGT+TGG - chr3_3:76068428-76068447 None:intergenic 50.0%
CGATGAGATGAGTGTGGGAT+AGG - chr3_3:76068513-76068532 None:intergenic 50.0%
GTTTGGCGATGAGATGAGTG+TGG - chr3_3:76068519-76068538 None:intergenic 50.0%
TACTGAAGTTTCGTCCACGG+CGG - chr3_3:76068626-76068645 None:intergenic 50.0%
ACTTCAGTCGATGAACGACG+CGG + chr3_3:76068679-76068698 Msa0473450:CDS 50.0%
AGACGAAACGCTTGAAGCTC+CGG - chr3_3:76068725-76068744 None:intergenic 50.0%
CGTTTCGTCTGGTGTGAAGT+TGG + chr3_3:76068735-76068754 Msa0473450:CDS 50.0%
AGGTTTGGAGGAACCGGATT+CGG + chr3_3:76068888-76068907 Msa0473450:CDS 50.0%
TGAGGTTTCGCAGAGTAGGA+CGG + chr3_3:76068966-76068985 Msa0473450:CDS 50.0%
AAGAGGAAATGGAGGTTGCG+GGG + chr3_3:76069016-76069035 Msa0473450:CDS 50.0%
AATGGAGGTTGCGGGGAAAT+TGG + chr3_3:76069023-76069042 Msa0473450:CDS 50.0%
!! AAAGTGCAGAAGGCGCTTGA+GGG + chr3_3:76069048-76069067 Msa0473450:CDS 50.0%
TTTGCTTCAGAGACGAGCTC+AGG + chr3_3:76069119-76069138 Msa0473450:CDS 50.0%
ACGAGCTCAGGCTGTGAATT+TGG + chr3_3:76069131-76069150 Msa0473450:CDS 50.0%
!! TTAGTGGTGGATGGCAGATG+AGG + chr3_3:76069235-76069254 Msa0473450:CDS 50.0%
TGGCAGATGAGGATGTGTCT+TGG + chr3_3:76069246-76069265 Msa0473450:CDS 50.0%
TAACAAGCAGGATGTGCCGA+TGG + chr3_3:76069882-76069901 Msa0473450:CDS 50.0%
GGGTGTATCCAGGACATTTG+AGG + chr3_3:76069969-76069988 Msa0473450:CDS 50.0%
AAAATCAGGTTCCCTGTGCG+TGG + chr3_3:76070549-76070568 Msa0473450:CDS 50.0%
CAGCGGTGAAGTTATCCTTG+GGG + chr3_3:76070829-76070848 Msa0473450:CDS 50.0%
TTCTCACCATGGCAGGGTTT+GGG + chr3_3:76071701-76071720 Msa0473450:intron 50.0%
GAGAGAGAGAGAGAGATGAG+AGG - chr3_3:76071768-76071787 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr3_3:76071790-76071809 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr3_3:76071789-76071808 None:intergenic 50.0%
CAGCCGTGCCTAGTAAAACA+TGG - chr3_3:76072046-76072065 None:intergenic 50.0%
! CATGTTTTACTAGGCACGGC+TGG + chr3_3:76072044-76072063 Msa0473450:intron 50.0%
! AAAAAGCTAATGGCGGGGAG+GGG - chr3_3:76072447-76072466 None:intergenic 50.0%
! CAAAAAAGCTAATGGCGGGG+AGG - chr3_3:76072449-76072468 None:intergenic 50.0%
GAACAAGATCGCCAAGAAGG+GGG - chr3_3:76072708-76072727 None:intergenic 50.0%
TACGCCTGTGAGGGATCAAA+AGG + chr3_3:76073088-76073107 Msa0473450:intron 50.0%
CTCTCTTAGTGGCAGGATTC+AGG + chr3_3:76073222-76073241 Msa0473450:intron 50.0%
TTAGTGGCAGGATTCAGGGA+AGG + chr3_3:76073227-76073246 Msa0473450:intron 50.0%
TAGTGGCAGGATTCAGGGAA+GGG + chr3_3:76073228-76073247 Msa0473450:intron 50.0%
! GCGTTCAAGCTCTTTTTCCC+TGG - chr3_3:76073611-76073630 None:intergenic 50.0%
GGAAAAAGAGCTTGAACGCC+AGG + chr3_3:76073612-76073631 Msa0473450:CDS 50.0%
CACCAAATGAGGGGGATAGA+AGG + chr3_3:76073931-76073950 Msa0473450:three_prime_UTR 50.0%
CACCTTCTATCCCCCTCATT+TGG - chr3_3:76073936-76073955 None:intergenic 50.0%
GAGCTAACTTTCTGCGGCTC+CGG - chr3_3:76068301-76068320 None:intergenic 55.0%
GAAGTGTGAGGCAGAGAACG+AGG - chr3_3:76068357-76068376 None:intergenic 55.0%
CGAGAATGAATGCTCCGGTG+AGG - chr3_3:76068468-76068487 None:intergenic 55.0%
GGAGCTTCAAGCGTTTCGTC+TGG + chr3_3:76068724-76068743 Msa0473450:CDS 55.0%
GGTTTGGAGGAACCGGATTC+GGG + chr3_3:76068889-76068908 Msa0473450:CDS 55.0%
GTTTGGAGGAACCGGATTCG+GGG + chr3_3:76068890-76068909 Msa0473450:CDS 55.0%
TTTCGCAGAGTAGGACGGTG+AGG + chr3_3:76068971-76068990 Msa0473450:CDS 55.0%
TTCGCAGAGTAGGACGGTGA+GGG + chr3_3:76068972-76068991 Msa0473450:CDS 55.0%
!! GAAAGTGCAGAAGGCGCTTG+AGG + chr3_3:76069047-76069066 Msa0473450:CDS 55.0%
!!! GGAGTTGATGGGGAGGCTTT+TGG + chr3_3:76069086-76069105 Msa0473450:CDS 55.0%
CACACCTTAGGCTGCACCTA+TGG + chr3_3:76069648-76069667 Msa0473450:intron 55.0%
!! TTAGGTGCCGGAGCAAGTTC+TGG + chr3_3:76070102-76070121 Msa0473450:CDS 55.0%
CCTTCTCAGCAGTCGAAGCA+CGG - chr3_3:76070128-76070147 None:intergenic 55.0%
TTCCACTGCTTCCACGCACA+GGG - chr3_3:76070563-76070582 None:intergenic 55.0%
! ACAGGCTGAGGCACTTGATC+TGG + chr3_3:76070987-76071006 Msa0473450:intron 55.0%
ATCGTCACTCCTCCAGTCCT+CGG - chr3_3:76071046-76071065 None:intergenic 55.0%
GTTCTCACCATGGCAGGGTT+TGG + chr3_3:76071700-76071719 Msa0473450:intron 55.0%
TCTCACCATGGCAGGGTTTG+GGG + chr3_3:76071702-76071721 Msa0473450:intron 55.0%
GGCACTGTGCAGGATTATGC+TGG + chr3_3:76072394-76072413 Msa0473450:CDS 55.0%
! AAAAGCTAATGGCGGGGAGG+GGG - chr3_3:76072446-76072465 None:intergenic 55.0%
TATCCGCTTTGCCCCCTTCT+TGG + chr3_3:76072694-76072713 Msa0473450:intron 55.0%
CTTTGTCGTCAAGCTCAGCC+TGG - chr3_3:76073633-76073652 None:intergenic 55.0%
!! GTCGAGGTGGTGGAGCTTTG+AGG - chr3_3:76068446-76068465 None:intergenic 60.0%
TGAATGCTCCGGTGAGGTCG+AGG - chr3_3:76068462-76068481 None:intergenic 60.0%
TGTGGGATAGGGTGCGTGGA+AGG - chr3_3:76068501-76068520 None:intergenic 60.0%
TGAGTGTGGGATAGGGTGCG+TGG - chr3_3:76068505-76068524 None:intergenic 60.0%
AGTTTCGTCCACGGCGGCTA+CGG - chr3_3:76068620-76068639 None:intergenic 60.0%
CGGGAAAGACGACGCAGATG+AGG + chr3_3:76068857-76068876 Msa0473450:CDS 60.0%
! AGCACGGCCAGAACTTGCTC+CGG - chr3_3:76070112-76070131 None:intergenic 60.0%
CCGTGCTTCGACTGCTGAGA+AGG + chr3_3:76070125-76070144 Msa0473450:CDS 60.0%
TTCCCTGTGCGTGGAAGCAG+TGG + chr3_3:76070558-76070577 Msa0473450:CDS 60.0%
CTTCCACTGCTTCCACGCAC+AGG - chr3_3:76070564-76070583 None:intergenic 60.0%
GACGGTGCTTGAGACAGCAG+AGG + chr3_3:76071014-76071033 Msa0473450:CDS 60.0%
ACCATGGCAGGGTTTGGGGA+AGG + chr3_3:76071706-76071725 Msa0473450:intron 60.0%
CCATGGCAGGGTTTGGGGAA+GGG + chr3_3:76071707-76071726 Msa0473450:intron 60.0%
! AAAGCTAATGGCGGGGAGGG+GGG - chr3_3:76072445-76072464 None:intergenic 60.0%
TCGCCAAGAAGGGGGCAAAG+CGG - chr3_3:76072700-76072719 None:intergenic 60.0%
TGGCAGGATTCAGGGAAGGG+TGG + chr3_3:76073231-76073250 Msa0473450:intron 60.0%
GGCAGGATTCAGGGAAGGGT+GGG + chr3_3:76073232-76073251 Msa0473450:intron 60.0%
CTCCACCACCTCGACCTCAC+CGG + chr3_3:76068451-76068470 Msa0473450:CDS 65.0%
ATGCTCCGGTGAGGTCGAGG+TGG - chr3_3:76068459-76068478 None:intergenic 65.0%
TTTATCCGCCGTAGCCGCCG+TGG + chr3_3:76068609-76068628 Msa0473450:CDS 65.0%
GACAGCAGAGGAAGCTGCCG+AGG + chr3_3:76071026-76071045 Msa0473450:CDS 65.0%
CAGAGGAAGCTGCCGAGGAC+TGG + chr3_3:76071031-76071050 Msa0473450:CDS 65.0%
AGGAAGCTGCCGAGGACTGG+AGG + chr3_3:76071034-76071053 Msa0473450:CDS 65.0%
CCCTTCCCCAAACCCTGCCA+TGG - chr3_3:76071710-76071729 None:intergenic 65.0%
! AAGCTAATGGCGGGGAGGGG+GGG - chr3_3:76072444-76072463 None:intergenic 65.0%
CTCCGGTGAGGTCGAGGTGG+TGG - chr3_3:76068456-76068475 None:intergenic 70.0%
TTCGTCCACGGCGGCTACGG+CGG - chr3_3:76068617-76068636 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76068288 76074276 76068288 ID=Msa0473450;Name=Msa0473450
chr3_3 mRNA 76068288 76074276 76068288 ID=Msa0473450-mRNA-1;Parent=Msa0473450;Name=Msa0473450-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145|0.77|0.9|0.9|1|1|10|396|724
chr3_3 exon 76068288 76069284 76068288 ID=Msa0473450-mRNA-1:exon:19815;Parent=Msa0473450-mRNA-1
chr3_3 exon 76069442 76069513 76069442 ID=Msa0473450-mRNA-1:exon:19816;Parent=Msa0473450-mRNA-1
chr3_3 exon 76069805 76070146 76069805 ID=Msa0473450-mRNA-1:exon:19817;Parent=Msa0473450-mRNA-1
chr3_3 exon 76070489 76070629 76070489 ID=Msa0473450-mRNA-1:exon:19818;Parent=Msa0473450-mRNA-1
chr3_3 exon 76070710 76070889 76070710 ID=Msa0473450-mRNA-1:exon:19819;Parent=Msa0473450-mRNA-1
chr3_3 exon 76070991 76071146 76070991 ID=Msa0473450-mRNA-1:exon:19820;Parent=Msa0473450-mRNA-1
chr3_3 exon 76072057 76072158 76072057 ID=Msa0473450-mRNA-1:exon:19821;Parent=Msa0473450-mRNA-1
chr3_3 exon 76072298 76072426 76072298 ID=Msa0473450-mRNA-1:exon:19822;Parent=Msa0473450-mRNA-1
chr3_3 exon 76073583 76073687 76073583 ID=Msa0473450-mRNA-1:exon:19823;Parent=Msa0473450-mRNA-1
chr3_3 exon 76073785 76074276 76073785 ID=Msa0473450-mRNA-1:exon:19824;Parent=Msa0473450-mRNA-1
chr3_3 five_prime_UTR 76068288 76068432 76068288 ID=Msa0473450-mRNA-1:five_prime_utr;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76068433 76069284 76068433 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76069442 76069513 76069442 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76069805 76070146 76069805 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76070489 76070629 76070489 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76070710 76070889 76070710 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76070991 76071146 76070991 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76072057 76072158 76072057 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76072298 76072426 76072298 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76073583 76073687 76073583 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 CDS 76073785 76073880 76073785 ID=Msa0473450-mRNA-1:cds;Parent=Msa0473450-mRNA-1
chr3_3 three_prime_UTR 76073881 76074276 76073881 ID=Msa0473450-mRNA-1:three_prime_utr;Parent=Msa0473450-mRNA-1
Gene Sequence

>Msa0473450

ATGGAGTTGGCCTCAAAGCTCCACCACCTCGACCTCACCGGAGCATTCATTCTCGATTCACGACGCCTTCCACGCACCCTATCCCACACTCATCTCATCGCCAAACCCAACACCTTCAACACTAACACTAACCCCAATCGATTCTTCACTTCAAAAAAACTCAATCATACTTCACGTTTATCCGCCGTAGCCGCCGTGGACGAAACTTCAGTAGCTGAAGACGATATCGAGTCACTATTTACCGATACTTCAGTCGATGAACGACGCGGTAACAATAAACAATCTAACACCGGAGCTTCAAGCGTTTCGTCTGGTGTGAAGTTGGAAAATATTAGAAAAACTTACAAAGGTGTCACGGTTTTGAAAGAGGTTAATTGGGAAGTGAAAAAGGGTGAGAAAGTGGGTTTAGTTGGTGTAAATGGTGCGGGAAAGACGACGCAGATGAGGATTATTGCAGGTTTGGAGGAACCGGATTCGGGGAATGTGATTAAAGCGAAACCAAATATGAAAATTGCGTTTTTGAGTCAGGAATTTGAGGTTTCGCAGAGTAGGACGGTGAGGGAAGAATTTATGAGTGCTTTTAAAGAGGAAATGGAGGTTGCGGGGAAATTGGAGAAAGTGCAGAAGGCGCTTGAGGGCTCTGTTAATGATTTGGAGTTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACGAGCTCAGGCTGTGAATTTGGATGTCGTTGATTCGAAGATAAGTAAGTTGATGCCTGAGCTTGGTTTTGGTGTAGAGGATTCTGATAGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAGATGAGGATGTGTCTTGGCAAGATTTTGCTTCAGTGTCGAGTCTGTATTGGAGATTGGACGTGTCTTCAATTGGAAGTGTCTAGTGGTGGTATTGCAAATTGCATGGAACCAGATTTGTTGTTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACAATTGAGTGGCTTGAAGATTATCTTAACAAGCAGGATGTGCCGATGGTTATCATTTCTCACGACAGAGCTTTTCTCGATCAACTATGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCTCAGTATATTCTTTCAAAGGCGACTTGGATTGAAACACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAAACAAGAGAGTTGATAAGCAGGTTAGGTGCCGGAGCAAGTTCTGGCCGTGCTTCGACTGCTGAGAAGAAATTGGAAAGACTTCTTGGAGAGGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGTGCGTGGAAGCAGTGGAAGATCTGTTGTAACAGTTAGGAACTTGGATTTTGGCTTTGAGGATAAAAAACTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGTTTAGAGAAGCCAATCAGCGGTGAAGTTATCCTTGGGGAGCATAATGTATTGCCTAACTATTTCGAGCAGAATCAGGCTGAGGCACTTGATCTGGAAAAGACGGTGCTTGAGACAGCAGAGGAAGCTGCCGAGGACTGGAGGAGTGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGATCGTAAAGTTTCTCTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTACTTGTTTTGGATGAACCAACGAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAATGAGTACGAGGGCACCGTTATCACCGTATCTCATGATCGGTACTTTATAAAGCAGATAGTTAATAGAGTGATTGAAGTTAAAGATGGCACTGTGCAGGATTATGCTGGAGATTACAATTATTATTTGGAGAAGAATCTTGATGCCAGGGAAAAAGAGCTTGAACGCCAGGCTGAGCTTGACGACAAAGCTCCTAAATTGAAAGCCAAATCCAAGATGTCAAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCCTTTCAGCAAGCAAAACAGAAGTCTAAAGGTGCAAAGAATTCAAAGAGATGGAATTAA
Protein sequence

>Msa0473450

MELASKLHHLDLTGAFILDSRRLPRTLSHTHLIAKPNTFNTNTNPNRFFTSKKLNHTSRLSAVAAVDETSVAEDDIESLFTDTSVDERRGNNKQSNTGASSVSSGVKLENIRKTYKGVTVLKEVNWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLSQEFEVSQSRTVREEFMSAFKEEMEVAGKLEKVQKALEGSVNDLELMGRLLDEFDLLQRRAQAVNLDVVDSKISKLMPELGFGVEDSDRLVASFSGGWQMRMCLGKILLQCRVCIGDWTCLQLEVSSGGIANCMEPDLLLLDEPTNHLDLDTIEWLEDYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASTAEKKLERLLGEELVEKPFERKQMKIRFPVRGSSGRSVVTVRNLDFGFEDKKLFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPISGEVILGEHNVLPNYFEQNQAEALDLEKTVLETAEEAAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTVITVSHDRYFIKQIVNRVIEVKDGTVQDYAGDYNYYLEKNLDAREKELERQAELDDKAPKLKAKSKMSKAEKEARKKQKMQAFQQAKQKSKGAKNSKRWN*