Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125980 | XP_024625327.1 | 96.095 | 461 | 12 | 3 | 1 | 456 | 1 | 460 | 0.0 | 915 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125980 | Q2HTF1 | 96.095 | 461 | 12 | 3 | 1 | 456 | 1 | 460 | 0.0 | 915 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0130570 | Msa1125980 | 0.802228 | 6.196173e-49 | -8.615850e-47 |
| Msa0219190 | Msa1125980 | 0.827902 | 1.210189e-54 | -8.615850e-47 |
| Msa1081570 | Msa1125980 | 0.804459 | 2.138284e-49 | -8.615850e-47 |
| Msa0298240 | Msa1125980 | 0.821488 | 3.930645e-53 | -8.615850e-47 |
| Msa1125810 | Msa1125980 | 0.810263 | 1.257620e-50 | -8.615850e-47 |
| Msa1125980 | Msa1127140 | 0.817706 | 2.868829e-52 | -8.615850e-47 |
| Msa1125980 | Msa1145020 | 0.800155 | 1.645618e-48 | -8.615850e-47 |
| Msa1125980 | Msa1166400 | 0.821508 | 3.890081e-53 | -8.615850e-47 |
| Msa1125980 | Msa1171310 | 0.812224 | 4.720838e-51 | -8.615850e-47 |
| Msa1125980 | Msa1420060 | 0.819796 | 9.621150e-53 | -8.615850e-47 |
| Msa1125980 | Msa1421550 | 0.811694 | 6.159643e-51 | -8.615850e-47 |
| Msa1125980 | Msa1459380 | 0.801983 | 6.961452e-49 | -8.615850e-47 |
| Msa0885060 | Msa1125980 | 0.801813 | 7.542921e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125980 | MtrunA17_Chr7g0266601 | 93.038 | 316 | 16 | 3 | 1 | 311 | 1 | 315 | 0.0 | 551 |
| Msa1125980 | MtrunA17_Chr1g0178441 | 52.212 | 452 | 199 | 8 | 9 | 449 | 18 | 463 | 8.92e-163 | 468 |
| Msa1125980 | MtrunA17_Chr7g0266591 | 96.053 | 152 | 6 | 0 | 305 | 456 | 6 | 157 | 1.92e-107 | 315 |
| Msa1125980 | MtrunA17_Chr1g0178421 | 56.634 | 309 | 119 | 6 | 5 | 307 | 3 | 302 | 4.29e-104 | 312 |
| Msa1125980 | MtrunA17_Chr1g0178431 | 78.986 | 138 | 27 | 1 | 305 | 440 | 6 | 143 | 4.66e-78 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125980 | AT3G52610.1 | 46.253 | 467 | 222 | 12 | 9 | 452 | 13 | 473 | 8.85e-139 | 407 |
Find 102 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTCAAATTTACGATTA+TGG | 0.178265 | 7_3:-77449036 | Msa1125980:three_prime_UTR |
| CCTCTCTCAAATCACAATTT+TGG | 0.217496 | 7_3:-77450519 | Msa1125980:intron |
| TCATGGTTTGGGACCATCTA+TGG | 0.223620 | 7_3:-77449217 | Msa1125980:CDS |
| ATGGGGTGTGCTTCGGTTCA+TGG | 0.237066 | 7_3:-77449234 | Msa1125980:CDS |
| TGTGCTTCGGTTCATGGTTT+GGG | 0.291835 | 7_3:-77449228 | Msa1125980:CDS |
| AATAACTGCAGCGGGATTAA+TGG | 0.304334 | 7_3:-77450619 | Msa1125980:CDS |
| GTGTGCTTCGGTTCATGGTT+TGG | 0.307756 | 7_3:-77449229 | Msa1125980:CDS |
| GTCCTCAAACACCGACATTA+TGG | 0.308407 | 7_3:+77449311 | None:intergenic |
| GCGATTGAGGATCTTGTTCC+TGG | 0.311297 | 7_3:-77451064 | Msa1125980:CDS |
| TACTTCATCATATGCATGTT+TGG | 0.345683 | 7_3:-77448988 | Msa1125980:three_prime_UTR |
| CGACATTATGGATGTTCTTA+AGG | 0.349557 | 7_3:+77449323 | None:intergenic |
| TGTTAATAAGCTCTTGCATT+TGG | 0.357546 | 7_3:+77449121 | None:intergenic |
| GCAAAGGGAAGAAACATATC+TGG | 0.359281 | 7_3:-77451039 | Msa1125980:CDS |
| TGAAAACGAGAAATATCAAT+AGG | 0.367993 | 7_3:+77451520 | None:intergenic |
| GAACTAGCCAAGAGGACTTA+TGG | 0.372116 | 7_3:-77449447 | Msa1125980:CDS |
| ATCTAGCCTTCCATCCCTTA+TGG | 0.374376 | 7_3:+77449182 | None:intergenic |
| ATCCATAATGTCGGTGTTTG+AGG | 0.408361 | 7_3:-77449313 | Msa1125980:CDS |
| ACCAGGGTTCTCTATGGCCT+TGG | 0.408629 | 7_3:+77449356 | None:intergenic |
| AGTAAACCTAAAAGAATTAA+CGG | 0.410580 | 7_3:+77450988 | None:intergenic |
| ATCCATCCCCGTTGCACTCT+AGG | 0.410966 | 7_3:-77449146 | Msa1125980:CDS |
| TTTGGTCCCTAGAGTGCAAC+GGG | 0.411997 | 7_3:+77449139 | None:intergenic |
| TACGATCTTGCCACGTGTTA+CGG | 0.414492 | 7_3:+77451284 | None:intergenic |
| CTTATCATTGTTCTTAGAGT+TGG | 0.418380 | 7_3:+77449416 | None:intergenic |
| TTATTACCCTCACTGATTGC+CGG | 0.431014 | 7_3:-77450557 | Msa1125980:CDS |
| TGTCAAACCAGGGTTCTCTA+TGG | 0.431401 | 7_3:+77449350 | None:intergenic |
| CACTCCGTTGCAACAAATCA+TGG | 0.432383 | 7_3:-77451320 | Msa1125980:CDS |
| TGTTGAGGATGTTGTTCCTT+TGG | 0.434930 | 7_3:-77451086 | Msa1125980:CDS |
| CTTAAGGATGATGTCAAACC+AGG | 0.439362 | 7_3:+77449339 | None:intergenic |
| ATGAAGGCTATTCTTATTGA+AGG | 0.442750 | 7_3:-77449096 | Msa1125980:CDS |
| AGCCATAATCGTAAATTTGA+AGG | 0.446489 | 7_3:+77449034 | None:intergenic |
| AAAGCCATTCGTGGTGGCAC+TGG | 0.454895 | 7_3:-77451574 | Msa1125980:CDS |
| TGTTGTTCCTTTGGCGATTG+AGG | 0.458789 | 7_3:-77451077 | Msa1125980:CDS |
| AGGAGTGTGGGATGTAAGAA+AGG | 0.459967 | 7_3:+77451408 | None:intergenic |
| CATGGTTTGGGACCATCTAT+GGG | 0.463005 | 7_3:-77449216 | Msa1125980:CDS |
| GGACTACATGGGGTGTGCTT+CGG | 0.472358 | 7_3:-77449241 | Msa1125980:CDS |
| AAGAATAGTTCTAAGAAGTA+CGG | 0.474242 | 7_3:-77450582 | Msa1125980:CDS |
| TCAACAACCACGTGATCAAA+GGG | 0.475334 | 7_3:-77449485 | Msa1125980:CDS |
| TCCATCCCCGTTGCACTCTA+GGG | 0.489654 | 7_3:-77449145 | Msa1125980:CDS |
| AAATGCTCCATAAGTCCTCT+TGG | 0.502139 | 7_3:+77449440 | None:intergenic |
| TGTTTCTTCCCTTTGCGACC+AGG | 0.508762 | 7_3:+77451046 | None:intergenic |
| ATGTCGACGGTTGAAACAAA+AGG | 0.509382 | 7_3:-77451631 | Msa1125980:CDS |
| TCCCTAGAGTGCAACGGGGA+TGG | 0.509671 | 7_3:+77449144 | None:intergenic |
| TTCAGGGTTGTAAGCAGAGT+AGG | 0.515071 | 7_3:-77450659 | Msa1125980:intron |
| ATCTTGTTCCTGGTCGCAAA+GGG | 0.516393 | 7_3:-77451054 | Msa1125980:CDS |
| CTCAACAACCACGTGATCAA+AGG | 0.519923 | 7_3:-77449486 | Msa1125980:CDS |
| GCAACAAGAGGTTGGAGTAG+AGG | 0.526477 | 7_3:-77449262 | Msa1125980:CDS |
| GGAGAATGTTGTTGCTGTTG+AGG | 0.528626 | 7_3:-77451101 | Msa1125980:CDS |
| CTTTGATCACGTGGTTGTTG+AGG | 0.530369 | 7_3:+77449487 | None:intergenic |
| AGAATAGTTCTAAGAAGTAC+GGG | 0.531546 | 7_3:-77450581 | Msa1125980:CDS |
| AATGCCAGTGCCACCACGAA+TGG | 0.537676 | 7_3:+77451570 | None:intergenic |
| TTGACACCATAAGGGATGGA+AGG | 0.538475 | 7_3:-77449188 | Msa1125980:CDS |
| AGAGCTTATTAACAAGATGA+AGG | 0.539515 | 7_3:-77449112 | Msa1125980:CDS |
| GATCTTGTTCCTGGTCGCAA+AGG | 0.543662 | 7_3:-77451055 | Msa1125980:CDS |
| TGTGGAGCAATAACTGCAGC+GGG | 0.545669 | 7_3:-77450627 | Msa1125980:CDS |
| AAGGCTATTCTTATTGAAGG+TGG | 0.558507 | 7_3:-77449093 | Msa1125980:CDS |
| GAAACAAAAGGTCGTAATGT+TGG | 0.558743 | 7_3:-77451619 | Msa1125980:CDS |
| CATGAACTTTCTTATGTCCA+AGG | 0.562719 | 7_3:-77449373 | Msa1125980:CDS |
| AAAGGAGAAAATAGTGTCTG+TGG | 0.563282 | 7_3:+77451426 | None:intergenic |
| AATTGTGATTTGAGAGAGGT+GGG | 0.571654 | 7_3:+77450523 | None:intergenic |
| TGTTCCATGATTTGTTGCAA+CGG | 0.573358 | 7_3:+77451316 | None:intergenic |
| GGTTGGAGTAGAGGACTACA+TGG | 0.579061 | 7_3:-77449253 | Msa1125980:CDS |
| GGCAAGATGCAACAAGAGGT+TGG | 0.579461 | 7_3:-77449270 | Msa1125980:CDS |
| GAGGACACGGTGGTTGATGA+CGG | 0.580211 | 7_3:-77449294 | Msa1125980:CDS |
| AAATTGTGATTTGAGAGAGG+TGG | 0.580439 | 7_3:+77450522 | None:intergenic |
| TAGCTTAAGTATTATGTCGA+CGG | 0.581330 | 7_3:-77451644 | None:intergenic |
| CAAAGGGAAGAAACATATCT+GGG | 0.581978 | 7_3:-77451038 | Msa1125980:CDS |
| CCAAAATTGTGATTTGAGAG+AGG | 0.582441 | 7_3:+77450519 | None:intergenic |
| TGAGAGAGGTGGGTCAAGAG+TGG | 0.586797 | 7_3:+77450533 | None:intergenic |
| AGCTGGTGCAAAGCCATTCG+TGG | 0.588805 | 7_3:-77451583 | Msa1125980:CDS |
| GATCACGTGGTTGTTGAGGA+TGG | 0.593465 | 7_3:+77449491 | None:intergenic |
| AAACATGTCAGTATCAATAC+CGG | 0.597857 | 7_3:+77451261 | None:intergenic |
| ACAAAAGGTCGTAATGTTGG+TGG | 0.598123 | 7_3:-77451616 | Msa1125980:CDS |
| TTGGTGGCACAGAATGTAGC+TGG | 0.609381 | 7_3:-77451600 | Msa1125980:CDS |
| CTTAAGAACATCCATAATGT+CGG | 0.610419 | 7_3:-77449322 | Msa1125980:CDS |
| AAATGCTAGGTCTTCACAAG+TGG | 0.613957 | 7_3:-77450942 | Msa1125980:CDS |
| AATGTCGGTGTTTGAGGACA+CGG | 0.619648 | 7_3:-77449307 | Msa1125980:CDS |
| ATTTGGTCCCTAGAGTGCAA+CGG | 0.621651 | 7_3:+77449138 | None:intergenic |
| ACAAGATCCTCAATCGCCAA+AGG | 0.623888 | 7_3:+77451070 | None:intergenic |
| AGTGGACCGGCAATCAGTGA+GGG | 0.635780 | 7_3:+77450551 | None:intergenic |
| GTGTGGAGCAATAACTGCAG+CGG | 0.636382 | 7_3:-77450628 | Msa1125980:CDS |
| AACACGTGGCAAGATCGTAC+CGG | 0.650719 | 7_3:-77451280 | Msa1125980:CDS |
| AAGAAACATATCTGGGAGCG+TGG | 0.650935 | 7_3:-77451031 | Msa1125980:CDS |
| CAATCAAACTGATACCAAGA+GGG | 0.655063 | 7_3:-77450906 | Msa1125980:CDS |
| TCCAAGGCCATAGAGAACCC+TGG | 0.655783 | 7_3:-77449357 | Msa1125980:CDS |
| AACAACCACGTGATCAAAGG+GGG | 0.655827 | 7_3:-77449483 | Msa1125980:CDS |
| CGGCGGCAAGATGCAACAAG+AGG | 0.657442 | 7_3:-77449274 | Msa1125980:CDS |
| GTTGGAGTAGAGGACTACAT+GGG | 0.661686 | 7_3:-77449252 | Msa1125980:CDS |
| TCAATCAAACTGATACCAAG+AGG | 0.661853 | 7_3:-77450907 | Msa1125980:CDS |
| GCTTGTGTTGATGAAAGATG+AGG | 0.663457 | 7_3:-77451131 | Msa1125980:CDS |
| GAGTGGACCGGCAATCAGTG+AGG | 0.664520 | 7_3:+77450550 | None:intergenic |
| CAGAGTAGGATTAAGCTGTG+TGG | 0.667291 | 7_3:-77450645 | Msa1125980:CDS |
| GAGGTGGGTCAAGAGTGGAC+CGG | 0.670737 | 7_3:+77450538 | None:intergenic |
| TTAAGGATGATGTCAAACCA+GGG | 0.675705 | 7_3:+77449340 | None:intergenic |
| ATGAACTGAACCGTAACACG+TGG | 0.676263 | 7_3:-77451294 | Msa1125980:CDS |
| TGGTGCAAAGCCATTCGTGG+TGG | 0.684258 | 7_3:-77451580 | Msa1125980:CDS |
| GTCTTTGGGAACTAGCCAAG+AGG | 0.697035 | 7_3:-77449455 | Msa1125980:CDS |
| CAACAACCACGTGATCAAAG+GGG | 0.713289 | 7_3:-77449484 | Msa1125980:CDS |
| TTGGAGTAGAGGACTACATG+GGG | 0.733565 | 7_3:-77449251 | Msa1125980:CDS |
| GACACGGTGGTTGATGACGG+CGG | 0.738900 | 7_3:-77449291 | Msa1125980:CDS |
| AGCATGCGATAGAACAACTG+CGG | 0.738953 | 7_3:-77451173 | Msa1125980:CDS |
| GTCGGTGTTTGAGGACACGG+TGG | 0.755614 | 7_3:-77449304 | Msa1125980:CDS |
| TTGGTCCCTAGAGTGCAACG+GGG | 0.825259 | 7_3:+77449140 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATACAAATATCAAATTAAT+TGG | + | chr7_3:77449853-77449872 | None:intergenic | 15.0% |
| !!! | ACTTTTGAATGATTTTTTTA+AGG | - | chr7_3:77450325-77450344 | Msa1125980:intron | 15.0% |
| !! | TAAATTAACACTTTACATAT+AGG | + | chr7_3:77450846-77450865 | None:intergenic | 15.0% |
| !!! | TTAAAAGTTTTTCTTTTTGA+AGG | - | chr7_3:77450863-77450882 | Msa1125980:intron | 15.0% |
| !! | AGTAAACCTAAAAGAATTAA+CGG | + | chr7_3:77449566-77449585 | None:intergenic | 20.0% |
| !! | TTAATGATACAAAAAATGCT+AGG | - | chr7_3:77449596-77449615 | Msa1125980:intron | 20.0% |
| !! | ACCAAACATAAAATAGATTA+GGG | + | chr7_3:77449686-77449705 | None:intergenic | 20.0% |
| !! | AACCAAACATAAAATAGATT+AGG | + | chr7_3:77449687-77449706 | None:intergenic | 20.0% |
| !!! | TAATCTATTTTATGTTTGGT+TGG | - | chr7_3:77449686-77449705 | Msa1125980:intron | 20.0% |
| !!! | CTCATATATATGTTTGATTT+TGG | + | chr7_3:77449809-77449828 | None:intergenic | 20.0% |
| !! | TGAAATGAAATTTGTATTTC+AGG | - | chr7_3:77449875-77449894 | Msa1125980:intron | 20.0% |
| !! | GAAATGAAATTTGTATTTCA+GGG | - | chr7_3:77449876-77449895 | Msa1125980:intron | 20.0% |
| !! | TAGAACCATTAATATGTATA+TGG | - | chr7_3:77450144-77450163 | Msa1125980:intron | 20.0% |
| !! | AAATGTTAACAAATGTCTAT+AGG | + | chr7_3:77450734-77450753 | None:intergenic | 20.0% |
| !! | GATGATTTAGAAATATTGAT+AGG | - | chr7_3:77451001-77451020 | Msa1125980:CDS | 20.0% |
| ! | TGAAAACGAGAAATATCAAT+AGG | + | chr7_3:77449034-77449053 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTGCAAGAATGT+TGG | + | chr7_3:77449206-77449225 | None:intergenic | 25.0% |
| !!! | AAGAATAGTTCTAAGAAGTA+CGG | - | chr7_3:77449969-77449988 | Msa1125980:intron | 25.0% |
| !! | GAGAACAGAAAATTGATTTA+TGG | - | chr7_3:77450097-77450116 | Msa1125980:intron | 25.0% |
| ! | CACTTCCATATACATATTAA+TGG | + | chr7_3:77450152-77450171 | None:intergenic | 25.0% |
| ! | CATTAATATGTATATGGAAG+TGG | - | chr7_3:77450150-77450169 | Msa1125980:intron | 25.0% |
| ! | AATAAGGAATGAATGTTGAT+TGG | + | chr7_3:77450199-77450218 | None:intergenic | 25.0% |
| !! | AGTTTTTCTTTTCACGAATA+AGG | + | chr7_3:77450215-77450234 | None:intergenic | 25.0% |
| ! | TCCACTAACAAAAAAAAAAG+AGG | - | chr7_3:77450595-77450614 | Msa1125980:CDS | 25.0% |
| ! | CCACTAACAAAAAAAAAAGA+GGG | - | chr7_3:77450596-77450615 | Msa1125980:CDS | 25.0% |
| ! | AAACGACTCTTTCAATTTAA+TGG | + | chr7_3:77450656-77450675 | None:intergenic | 25.0% |
| !!! | AAGTTTTTCTTTTTGAAGGA+AGG | - | chr7_3:77450867-77450886 | Msa1125980:intron | 25.0% |
| !! | ATTTTGTAGTTTGTGAAGTG+AGG | + | chr7_3:77449059-77449078 | None:intergenic | 30.0% |
| AAACATGTCAGTATCAATAC+CGG | + | chr7_3:77449293-77449312 | None:intergenic | 30.0% | |
| TATGCCTGATGAAAAAACAT+GGG | - | chr7_3:77449330-77449349 | Msa1125980:CDS | 30.0% | |
| ! | GTTACTCCGTTAATTCTTTT+AGG | - | chr7_3:77449557-77449576 | Msa1125980:intron | 30.0% |
| !! | TTTTACATCTAAAACCCTCT+TGG | + | chr7_3:77449662-77449681 | None:intergenic | 30.0% |
| ! | GCCCTAATCTATTTTATGTT+TGG | - | chr7_3:77449682-77449701 | Msa1125980:intron | 30.0% |
| ! | ATGCAGTTTTTGCAAAATCA+TGG | + | chr7_3:77449749-77449768 | None:intergenic | 30.0% |
| !! | AGAATAGTTCTAAGAAGTAC+GGG | - | chr7_3:77449970-77449989 | Msa1125980:intron | 30.0% |
| ! | CATTTAAGATGAGATAGAGA+GGG | + | chr7_3:77450432-77450451 | None:intergenic | 30.0% |
| ! | TCATTTAAGATGAGATAGAG+AGG | + | chr7_3:77450433-77450452 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTAGTGGATGAAG+TGG | + | chr7_3:77450590-77450609 | None:intergenic | 30.0% |
| !!! | CCCTCTTTTTTTTTTGTTAG+TGG | + | chr7_3:77450599-77450618 | None:intergenic | 30.0% |
| GTGCATATGTTTCAATGTAT+AGG | - | chr7_3:77451023-77451042 | Msa1125980:CDS | 30.0% | |
| CTTATCATTGTTCTTAGAGT+TGG | + | chr7_3:77451138-77451157 | None:intergenic | 30.0% | |
| CTTAAGAACATCCATAATGT+CGG | - | chr7_3:77451229-77451248 | Msa1125980:CDS | 30.0% | |
| TGTTAATAAGCTCTTGCATT+TGG | + | chr7_3:77451433-77451452 | None:intergenic | 30.0% | |
| AGAGCTTATTAACAAGATGA+AGG | - | chr7_3:77451439-77451458 | Msa1125980:CDS | 30.0% | |
| ATGAAGGCTATTCTTATTGA+AGG | - | chr7_3:77451455-77451474 | Msa1125980:CDS | 30.0% | |
| CACCTTCAAATTTACGATTA+TGG | - | chr7_3:77451515-77451534 | Msa1125980:CDS | 30.0% | |
| AGCCATAATCGTAAATTTGA+AGG | + | chr7_3:77451520-77451539 | None:intergenic | 30.0% | |
| TACTTCATCATATGCATGTT+TGG | - | chr7_3:77451563-77451582 | Msa1125980:CDS | 30.0% | |
| GAAACAAAAGGTCGTAATGT+TGG | - | chr7_3:77448932-77448951 | Msa1125980:three_prime_UTR | 35.0% | |
| ! | TTTTGATCTGAGGATAGGAT+GGG | + | chr7_3:77449083-77449102 | None:intergenic | 35.0% |
| AAAGGAGAAAATAGTGTCTG+TGG | + | chr7_3:77449128-77449147 | None:intergenic | 35.0% | |
| !! | GATTTTGATGAAAGGAGTGT+GGG | + | chr7_3:77449158-77449177 | None:intergenic | 35.0% |
| !! | TGAGACTCGATTTTGATGAA+AGG | + | chr7_3:77449166-77449185 | None:intergenic | 35.0% |
| !! | TGTTCCATGATTTGTTGCAA+CGG | + | chr7_3:77449238-77449257 | None:intergenic | 35.0% |
| CTATGCCTGATGAAAAAACA+TGG | - | chr7_3:77449329-77449348 | Msa1125980:CDS | 35.0% | |
| GATGAAAGATGAGGAAAAAG+AGG | - | chr7_3:77449429-77449448 | Msa1125980:CDS | 35.0% | |
| CAAAGGGAAGAAACATATCT+GGG | - | chr7_3:77449513-77449532 | Msa1125980:intron | 35.0% | |
| TCAATCAAACTGATACCAAG+AGG | - | chr7_3:77449644-77449663 | Msa1125980:intron | 35.0% | |
| CAATCAAACTGATACCAAGA+GGG | - | chr7_3:77449645-77449664 | Msa1125980:intron | 35.0% | |
| CATCGTACAAGATTAAGTAC+CGG | - | chr7_3:77449717-77449736 | Msa1125980:intron | 35.0% | |
| ATCGTACAAGATTAAGTACC+GGG | - | chr7_3:77449718-77449737 | Msa1125980:intron | 35.0% | |
| AATTGTGATTTGAGAGAGGT+GGG | + | chr7_3:77450031-77450050 | None:intergenic | 35.0% | |
| AAATTGTGATTTGAGAGAGG+TGG | + | chr7_3:77450032-77450051 | None:intergenic | 35.0% | |
| CCAAAATTGTGATTTGAGAG+AGG | + | chr7_3:77450035-77450054 | None:intergenic | 35.0% | |
| ! | CCTCTCTCAAATCACAATTT+TGG | - | chr7_3:77450032-77450051 | Msa1125980:intron | 35.0% |
| TATGTATATGGAAGTGGAAG+TGG | - | chr7_3:77450156-77450175 | Msa1125980:intron | 35.0% | |
| ! | AGGAATGAATGTTGATTGGT+CGG | + | chr7_3:77450195-77450214 | None:intergenic | 35.0% |
| TGCGATATTGTTCGATTGAA+TGG | - | chr7_3:77450518-77450537 | Msa1125980:intron | 35.0% | |
| TAAATTCGCACGCAATTGTA+AGG | + | chr7_3:77450557-77450576 | None:intergenic | 35.0% | |
| ATCAATTTCCTTGATACACG+AGG | - | chr7_3:77450790-77450809 | Msa1125980:intron | 35.0% | |
| ! | TGATAAGCACTTTTCAGACA+TGG | - | chr7_3:77451151-77451170 | Msa1125980:CDS | 35.0% |
| CATGAACTTTCTTATGTCCA+AGG | - | chr7_3:77451178-77451197 | Msa1125980:CDS | 35.0% | |
| TTAAGGATGATGTCAAACCA+GGG | + | chr7_3:77451214-77451233 | None:intergenic | 35.0% | |
| CGACATTATGGATGTTCTTA+AGG | + | chr7_3:77451231-77451250 | None:intergenic | 35.0% | |
| GTGTCAAAAATACCCATAGA+TGG | + | chr7_3:77451350-77451369 | None:intergenic | 35.0% | |
| !! | TGGGTATTTTTGACACCATA+AGG | - | chr7_3:77451354-77451373 | Msa1125980:CDS | 35.0% |
| !! | GGGTATTTTTGACACCATAA+GGG | - | chr7_3:77451355-77451374 | Msa1125980:CDS | 35.0% |
| ! | ATTTTTGACACCATAAGGGA+TGG | - | chr7_3:77451359-77451378 | Msa1125980:CDS | 35.0% |
| AAGGCTATTCTTATTGAAGG+TGG | - | chr7_3:77451458-77451477 | Msa1125980:CDS | 35.0% | |
| ATGTCGACGGTTGAAACAAA+AGG | - | chr7_3:77448920-77448939 | Msa1125980:three_prime_UTR | 40.0% | |
| ACAAAAGGTCGTAATGTTGG+TGG | - | chr7_3:77448935-77448954 | Msa1125980:three_prime_UTR | 40.0% | |
| !! | GTTTTGATCTGAGGATAGGA+TGG | + | chr7_3:77449084-77449103 | None:intergenic | 40.0% |
| !! | TGGAGTTTTGATCTGAGGAT+AGG | + | chr7_3:77449088-77449107 | None:intergenic | 40.0% |
| !! | ATGTGTGGAGTTTTGATCTG+AGG | + | chr7_3:77449093-77449112 | None:intergenic | 40.0% |
| ! | TGGATGATGATGATGATGTG+TGG | + | chr7_3:77449108-77449127 | None:intergenic | 40.0% |
| !! | CGATTTTGATGAAAGGAGTG+TGG | + | chr7_3:77449159-77449178 | None:intergenic | 40.0% |
| !!! | ACCACCCATGTTTTTTCATC+AGG | + | chr7_3:77449337-77449356 | None:intergenic | 40.0% |
| TGATGAAAAAACATGGGTGG+TGG | - | chr7_3:77449336-77449355 | Msa1125980:CDS | 40.0% | |
| ! | GCTTGTGTTGATGAAAGATG+AGG | - | chr7_3:77449420-77449439 | Msa1125980:CDS | 40.0% |
| TGTTGAGGATGTTGTTCCTT+TGG | - | chr7_3:77449465-77449484 | Msa1125980:CDS | 40.0% | |
| GCAAAGGGAAGAAACATATC+TGG | - | chr7_3:77449512-77449531 | Msa1125980:intron | 40.0% | |
| AAATGCTAGGTCTTCACAAG+TGG | - | chr7_3:77449609-77449628 | Msa1125980:intron | 40.0% | |
| TGCAAAATCATGGTGATTCC+CGG | + | chr7_3:77449739-77449758 | None:intergenic | 40.0% | |
| AATAACTGCAGCGGGATTAA+TGG | - | chr7_3:77449932-77449951 | Msa1125980:intron | 40.0% | |
| ! | TTATTACCCTCACTGATTGC+CGG | - | chr7_3:77449994-77450013 | Msa1125980:intron | 40.0% |
| AGAAAAACTAACTCTGCAGC+TGG | - | chr7_3:77450226-77450245 | Msa1125980:intron | 40.0% | |
| CAAAGTAACCTCGTGTATCA+AGG | + | chr7_3:77450801-77450820 | None:intergenic | 40.0% | |
| CTTGATACACGAGGTTACTT+TGG | - | chr7_3:77450799-77450818 | Msa1125980:intron | 40.0% | |
| TCAACAACCACGTGATCAAA+GGG | - | chr7_3:77451066-77451085 | Msa1125980:CDS | 40.0% | |
| AAATGCTCCATAAGTCCTCT+TGG | + | chr7_3:77451114-77451133 | None:intergenic | 40.0% | |
| CTTAAGGATGATGTCAAACC+AGG | + | chr7_3:77451215-77451234 | None:intergenic | 40.0% | |
| ! | ATCCATAATGTCGGTGTTTG+AGG | - | chr7_3:77451238-77451257 | Msa1125980:CDS | 40.0% |
| TGAAGGTGGAAAAACATACG+AGG | - | chr7_3:77451472-77451491 | Msa1125980:CDS | 40.0% | |
| ! | AGGAGTGTGGGATGTAAGAA+AGG | + | chr7_3:77449146-77449165 | None:intergenic | 45.0% |
| CACTCCGTTGCAACAAATCA+TGG | - | chr7_3:77449231-77449250 | Msa1125980:CDS | 45.0% | |
| ATGAACTGAACCGTAACACG+TGG | - | chr7_3:77449257-77449276 | Msa1125980:CDS | 45.0% | |
| TACGATCTTGCCACGTGTTA+CGG | + | chr7_3:77449270-77449289 | None:intergenic | 45.0% | |
| GCCTGATGAAAAAACATGGG+TGG | - | chr7_3:77449333-77449352 | Msa1125980:CDS | 45.0% | |
| AGCATGCGATAGAACAACTG+CGG | - | chr7_3:77449378-77449397 | Msa1125980:CDS | 45.0% | |
| ! | GGAGAATGTTGTTGCTGTTG+AGG | - | chr7_3:77449450-77449469 | Msa1125980:CDS | 45.0% |
| TGTTGTTCCTTTGGCGATTG+AGG | - | chr7_3:77449474-77449493 | Msa1125980:CDS | 45.0% | |
| ACAAGATCCTCAATCGCCAA+AGG | + | chr7_3:77449484-77449503 | None:intergenic | 45.0% | |
| ATCTTGTTCCTGGTCGCAAA+GGG | - | chr7_3:77449497-77449516 | Msa1125980:CDS | 45.0% | |
| AAGAAACATATCTGGGAGCG+TGG | - | chr7_3:77449520-77449539 | Msa1125980:intron | 45.0% | |
| TTCAGGGTTGTAAGCAGAGT+AGG | - | chr7_3:77449892-77449911 | Msa1125980:intron | 45.0% | |
| CAGAGTAGGATTAAGCTGTG+TGG | - | chr7_3:77449906-77449925 | Msa1125980:intron | 45.0% | |
| GCAAGCAAAACTTTGCGTAC+AGG | - | chr7_3:77450281-77450300 | Msa1125980:intron | 45.0% | |
| CTTTGATCACGTGGTTGTTG+AGG | + | chr7_3:77451067-77451086 | None:intergenic | 45.0% | |
| CTCAACAACCACGTGATCAA+AGG | - | chr7_3:77451065-77451084 | Msa1125980:CDS | 45.0% | |
| CAACAACCACGTGATCAAAG+GGG | - | chr7_3:77451067-77451086 | Msa1125980:CDS | 45.0% | |
| AACAACCACGTGATCAAAGG+GGG | - | chr7_3:77451068-77451087 | Msa1125980:CDS | 45.0% | |
| TCAAAGGGGGAGAAAGTCTT+TGG | - | chr7_3:77451081-77451100 | Msa1125980:CDS | 45.0% | |
| CAAAGGGGGAGAAAGTCTTT+GGG | - | chr7_3:77451082-77451101 | Msa1125980:CDS | 45.0% | |
| GAACTAGCCAAGAGGACTTA+TGG | - | chr7_3:77451104-77451123 | Msa1125980:CDS | 45.0% | |
| TGTCAAACCAGGGTTCTCTA+TGG | + | chr7_3:77451204-77451223 | None:intergenic | 45.0% | |
| GTCCTCAAACACCGACATTA+TGG | + | chr7_3:77451243-77451262 | None:intergenic | 45.0% | |
| ! | AATGTCGGTGTTTGAGGACA+CGG | - | chr7_3:77451244-77451263 | Msa1125980:CDS | 45.0% |
| GTTGGAGTAGAGGACTACAT+GGG | - | chr7_3:77451299-77451318 | Msa1125980:CDS | 45.0% | |
| TTGGAGTAGAGGACTACATG+GGG | - | chr7_3:77451300-77451319 | Msa1125980:CDS | 45.0% | |
| TGTGCTTCGGTTCATGGTTT+GGG | - | chr7_3:77451323-77451342 | Msa1125980:CDS | 45.0% | |
| ! | TCATGGTTTGGGACCATCTA+TGG | - | chr7_3:77451334-77451353 | Msa1125980:CDS | 45.0% |
| ! | CATGGTTTGGGACCATCTAT+GGG | - | chr7_3:77451335-77451354 | Msa1125980:CDS | 45.0% |
| TTGACACCATAAGGGATGGA+AGG | - | chr7_3:77451363-77451382 | Msa1125980:CDS | 45.0% | |
| ! | ATCTAGCCTTCCATCCCTTA+TGG | + | chr7_3:77451372-77451391 | None:intergenic | 45.0% |
| ATTTGGTCCCTAGAGTGCAA+CGG | + | chr7_3:77451416-77451435 | None:intergenic | 45.0% | |
| ! | TTGGTGGCACAGAATGTAGC+TGG | - | chr7_3:77448951-77448970 | Msa1125980:three_prime_UTR | 50.0% |
| AACACGTGGCAAGATCGTAC+CGG | - | chr7_3:77449271-77449290 | Msa1125980:CDS | 50.0% | |
| GCGATTGAGGATCTTGTTCC+TGG | - | chr7_3:77449487-77449506 | Msa1125980:CDS | 50.0% | |
| GATCTTGTTCCTGGTCGCAA+AGG | - | chr7_3:77449496-77449515 | Msa1125980:CDS | 50.0% | |
| TGTTTCTTCCCTTTGCGACC+AGG | + | chr7_3:77449508-77449527 | None:intergenic | 50.0% | |
| GTGTGGAGCAATAACTGCAG+CGG | - | chr7_3:77449923-77449942 | Msa1125980:intron | 50.0% | |
| TGTGGAGCAATAACTGCAGC+GGG | - | chr7_3:77449924-77449943 | Msa1125980:intron | 50.0% | |
| GATCACGTGGTTGTTGAGGA+TGG | + | chr7_3:77451063-77451082 | None:intergenic | 50.0% | |
| TTTCTCCCCCTTTGATCACG+TGG | + | chr7_3:77451076-77451095 | None:intergenic | 50.0% | |
| ! | GTCTTTGGGAACTAGCCAAG+AGG | - | chr7_3:77451096-77451115 | Msa1125980:CDS | 50.0% |
| GGCAAGATGCAACAAGAGGT+TGG | - | chr7_3:77451281-77451300 | Msa1125980:CDS | 50.0% | |
| GCAACAAGAGGTTGGAGTAG+AGG | - | chr7_3:77451289-77451308 | Msa1125980:CDS | 50.0% | |
| GGTTGGAGTAGAGGACTACA+TGG | - | chr7_3:77451298-77451317 | Msa1125980:CDS | 50.0% | |
| GTGTGCTTCGGTTCATGGTT+TGG | - | chr7_3:77451322-77451341 | Msa1125980:CDS | 50.0% | |
| TTTGGTCCCTAGAGTGCAAC+GGG | + | chr7_3:77451415-77451434 | None:intergenic | 50.0% | |
| AGCTGGTGCAAAGCCATTCG+TGG | - | chr7_3:77448968-77448987 | Msa1125980:three_prime_UTR | 55.0% | |
| TGGTGCAAAGCCATTCGTGG+TGG | - | chr7_3:77448971-77448990 | Msa1125980:three_prime_UTR | 55.0% | |
| AAAGCCATTCGTGGTGGCAC+TGG | - | chr7_3:77448977-77448996 | Msa1125980:three_prime_UTR | 55.0% | |
| AATGCCAGTGCCACCACGAA+TGG | + | chr7_3:77448984-77449003 | None:intergenic | 55.0% | |
| AGTGGACCGGCAATCAGTGA+GGG | + | chr7_3:77450003-77450022 | None:intergenic | 55.0% | |
| TGAGAGAGGTGGGTCAAGAG+TGG | + | chr7_3:77450021-77450040 | None:intergenic | 55.0% | |
| TCCAAGGCCATAGAGAACCC+TGG | - | chr7_3:77451194-77451213 | Msa1125980:CDS | 55.0% | |
| ACCAGGGTTCTCTATGGCCT+TGG | + | chr7_3:77451198-77451217 | None:intergenic | 55.0% | |
| !! | GAGGACACGGTGGTTGATGA+CGG | - | chr7_3:77451257-77451276 | Msa1125980:CDS | 55.0% |
| GGACTACATGGGGTGTGCTT+CGG | - | chr7_3:77451310-77451329 | Msa1125980:CDS | 55.0% | |
| ATGGGGTGTGCTTCGGTTCA+TGG | - | chr7_3:77451317-77451336 | Msa1125980:CDS | 55.0% | |
| ATCCATCCCCGTTGCACTCT+AGG | - | chr7_3:77451405-77451424 | Msa1125980:CDS | 55.0% | |
| TCCATCCCCGTTGCACTCTA+GGG | - | chr7_3:77451406-77451425 | Msa1125980:CDS | 55.0% | |
| TTGGTCCCTAGAGTGCAACG+GGG | + | chr7_3:77451414-77451433 | None:intergenic | 55.0% | |
| GAGTGGACCGGCAATCAGTG+AGG | + | chr7_3:77450004-77450023 | None:intergenic | 60.0% | |
| GAGGTGGGTCAAGAGTGGAC+CGG | + | chr7_3:77450016-77450035 | None:intergenic | 60.0% | |
| ! | GTCGGTGTTTGAGGACACGG+TGG | - | chr7_3:77451247-77451266 | Msa1125980:CDS | 60.0% |
| !! | GACACGGTGGTTGATGACGG+CGG | - | chr7_3:77451260-77451279 | Msa1125980:CDS | 60.0% |
| CGGCGGCAAGATGCAACAAG+AGG | - | chr7_3:77451277-77451296 | Msa1125980:CDS | 60.0% | |
| TCCCTAGAGTGCAACGGGGA+TGG | + | chr7_3:77451410-77451429 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 77448920 | 77451653 | 77448920 | ID=Msa1125980;Name=Msa1125980 |
| chr7_3 | mRNA | 77448920 | 77451653 | 77448920 | ID=Msa1125980-mRNA-1;Parent=Msa1125980;Name=Msa1125980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|1|1|1|3|151|456 |
| chr7_3 | exon | 77448920 | 77449528 | 77448920 | ID=Msa1125980-mRNA-1:exon:21386;Parent=Msa1125980-mRNA-1 |
| chr7_3 | exon | 77450520 | 77450676 | 77450520 | ID=Msa1125980-mRNA-1:exon:21385;Parent=Msa1125980-mRNA-1 |
| chr7_3 | exon | 77450898 | 77451653 | 77450898 | ID=Msa1125980-mRNA-1:exon:21384;Parent=Msa1125980-mRNA-1 |
| chr7_3 | CDS | 77450898 | 77451653 | 77450898 | ID=Msa1125980-mRNA-1:cds;Parent=Msa1125980-mRNA-1 |
| chr7_3 | CDS | 77450520 | 77450676 | 77450520 | ID=Msa1125980-mRNA-1:cds;Parent=Msa1125980-mRNA-1 |
| chr7_3 | CDS | 77449071 | 77449528 | 77449071 | ID=Msa1125980-mRNA-1:cds;Parent=Msa1125980-mRNA-1 |
| chr7_3 | three_prime_UTR | 77448920 | 77449070 | 77448920 | ID=Msa1125980-mRNA-1:three_prime_utr;Parent=Msa1125980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
