Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171310 | Q2HTF1 | 96.095 | 461 | 12 | 3 | 1 | 456 | 1 | 460 | 0.0 | 915 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa1171310 | 0.845054 | 5.158611e-59 | -8.615850e-47 |
| Msa0015710 | Msa1171310 | 0.815021 | 1.144151e-51 | -8.615850e-47 |
| Msa0019600 | Msa1171310 | 0.834345 | 3.163000e-56 | -8.615850e-47 |
| Msa0055450 | Msa1171310 | 0.801832 | 7.473852e-49 | -8.615850e-47 |
| Msa0104500 | Msa1171310 | 0.813849 | 2.078256e-51 | -8.615850e-47 |
| Msa0111750 | Msa1171310 | 0.807152 | 5.810489e-50 | -8.615850e-47 |
| Msa0669840 | Msa1171310 | 0.858741 | 6.687323e-63 | -8.615850e-47 |
| Msa0707220 | Msa1171310 | 0.803709 | 3.062923e-49 | -8.615850e-47 |
| Msa0709450 | Msa1171310 | 0.873515 | 1.385618e-67 | -8.615850e-47 |
| Msa0711320 | Msa1171310 | 0.843405 | 1.430073e-58 | -8.615850e-47 |
| Msa0725860 | Msa1171310 | 0.821577 | 3.750617e-53 | -8.615850e-47 |
| Msa0739470 | Msa1171310 | 0.821912 | 3.136242e-53 | -8.615850e-47 |
| Msa0739580 | Msa1171310 | 0.854480 | 1.196755e-61 | -8.615850e-47 |
| Msa0748400 | Msa1171310 | 0.819410 | 1.178859e-52 | -8.615850e-47 |
| Msa0751890 | Msa1171310 | 0.853704 | 2.003363e-61 | -8.615850e-47 |
| Msa0752840 | Msa1171310 | 0.837238 | 5.848541e-57 | -8.615850e-47 |
| Msa0764820 | Msa1171310 | 0.809612 | 1.736507e-50 | -8.615850e-47 |
| Msa0782230 | Msa1171310 | 0.812270 | 4.613954e-51 | -8.615850e-47 |
| Msa0782360 | Msa1171310 | 0.823892 | 1.084175e-53 | -8.615850e-47 |
| Msa0786040 | Msa1171310 | 0.841928 | 3.529555e-58 | -8.615850e-47 |
| Msa0819890 | Msa1171310 | 0.843348 | 1.480444e-58 | -8.615850e-47 |
| Msa0819900 | Msa1171310 | 0.809094 | 2.241861e-50 | -8.615850e-47 |
| Msa0823400 | Msa1171310 | 0.816353 | 5.777339e-52 | -8.615850e-47 |
| Msa0828830 | Msa1171310 | 0.800075 | 1.708684e-48 | -8.615850e-47 |
| Msa0831940 | Msa1171310 | 0.868703 | 5.362087e-66 | -8.615850e-47 |
| Msa0124130 | Msa1171310 | 0.863544 | 2.308088e-64 | -8.615850e-47 |
| Msa0141120 | Msa1171310 | 0.806379 | 8.462897e-50 | -8.615850e-47 |
| Msa0149140 | Msa1171310 | 0.864095 | 1.556095e-64 | -8.615850e-47 |
| Msa0152480 | Msa1171310 | 0.839054 | 1.992602e-57 | -8.615850e-47 |
| Msa0152500 | Msa1171310 | 0.847536 | 1.086749e-59 | -8.615850e-47 |
| Msa0185490 | Msa1171310 | 0.806242 | 9.045052e-50 | -8.615850e-47 |
| Msa0212080 | Msa1171310 | 0.835498 | 1.620359e-56 | -8.615850e-47 |
| Msa0212150 | Msa1171310 | 0.817122 | 3.883213e-52 | -8.615850e-47 |
| Msa0215640 | Msa1171310 | 0.823753 | 1.169181e-53 | -8.615850e-47 |
| Msa0219190 | Msa1171310 | 0.805857 | 1.090412e-49 | -8.615850e-47 |
| Msa0373960 | Msa1171310 | 0.810893 | 9.192077e-51 | -8.615850e-47 |
| Msa0375700 | Msa1171310 | 0.805548 | 1.265710e-49 | -8.615850e-47 |
| Msa0375910 | Msa1171310 | 0.805469 | 1.314817e-49 | -8.615850e-47 |
| Msa0385390 | Msa1171310 | 0.800317 | 1.525686e-48 | -8.615850e-47 |
| Msa0392420 | Msa1171310 | 0.838869 | 2.224827e-57 | -8.615850e-47 |
| Msa0392460 | Msa1171310 | 0.834043 | 3.764036e-56 | -8.615850e-47 |
| Msa0392490 | Msa1171310 | 0.824219 | 9.087628e-54 | -8.615850e-47 |
| Msa0406000 | Msa1171310 | 0.860452 | 2.045043e-63 | -8.615850e-47 |
| Msa0415320 | Msa1171310 | 0.850637 | 1.492796e-60 | -8.615850e-47 |
| Msa0423100 | Msa1171310 | 0.822339 | 2.496928e-53 | -8.615850e-47 |
| Msa0424330 | Msa1171310 | 0.836039 | 1.181689e-56 | -8.615850e-47 |
| Msa0424340 | Msa1171310 | 0.844850 | 5.854510e-59 | -8.615850e-47 |
| Msa0424350 | Msa1171310 | 0.847678 | 9.935363e-60 | -8.615850e-47 |
| Msa0441590 | Msa1171310 | 0.828988 | 6.617061e-55 | -8.615850e-47 |
| Msa0451400 | Msa1171310 | 0.858529 | 7.738325e-63 | -8.615850e-47 |
| Msa0469260 | Msa1171310 | 0.819863 | 9.289843e-53 | -8.615850e-47 |
| Msa0996270 | Msa1171310 | 0.853194 | 2.807524e-61 | -8.615850e-47 |
| Msa0999300 | Msa1171310 | 0.815350 | 9.672618e-52 | -8.615850e-47 |
| Msa0999340 | Msa1171310 | 0.823369 | 1.437533e-53 | -8.615850e-47 |
| Msa0999350 | Msa1171310 | 0.806168 | 9.378510e-50 | -8.615850e-47 |
| Msa0999360 | Msa1171310 | 0.807237 | 5.576725e-50 | -8.615850e-47 |
| Msa0999390 | Msa1171310 | 0.830734 | 2.486135e-55 | -8.615850e-47 |
| Msa0999410 | Msa1171310 | 0.808208 | 3.467632e-50 | -8.615850e-47 |
| Msa0999700 | Msa1171310 | 0.810572 | 1.078181e-50 | -8.615850e-47 |
| Msa1037890 | Msa1171310 | 0.818807 | 1.616149e-52 | -8.615850e-47 |
| Msa1037900 | Msa1171310 | 0.809956 | 1.464169e-50 | -8.615850e-47 |
| Msa1037910 | Msa1171310 | 0.811706 | 6.121049e-51 | -8.615850e-47 |
| Msa1084520 | Msa1171310 | 0.958119 | 5.174341e-116 | -8.615850e-47 |
| Msa0252630 | Msa1171310 | 0.856292 | 3.550911e-62 | -8.615850e-47 |
| Msa0252770 | Msa1171310 | 0.821260 | 4.439088e-53 | -8.615850e-47 |
| Msa0289920 | Msa1171310 | 0.800750 | 1.245028e-48 | -8.615850e-47 |
| Msa0291330 | Msa1171310 | 0.835380 | 1.736064e-56 | -8.615850e-47 |
| Msa0306120 | Msa1171310 | 0.801814 | 7.538376e-49 | -8.615850e-47 |
| Msa0329620 | Msa1171310 | 0.816607 | 5.068993e-52 | -8.615850e-47 |
| Msa0333450 | Msa1171310 | 0.813047 | 3.118515e-51 | -8.615850e-47 |
| Msa0333700 | Msa1171310 | 0.825520 | 4.482083e-54 | -8.615850e-47 |
| Msa0343660 | Msa1171310 | 0.857916 | 1.177705e-62 | -8.615850e-47 |
| Msa0344570 | Msa1171310 | 0.822859 | 1.890318e-53 | -8.615850e-47 |
| Msa0351770 | Msa1171310 | 0.846493 | 2.097955e-59 | -8.615850e-47 |
| Msa0359250 | Msa1171310 | 0.861132 | 1.272029e-63 | -8.615850e-47 |
| Msa1125810 | Msa1171310 | 0.944242 | 2.793247e-103 | -8.615850e-47 |
| Msa1125980 | Msa1171310 | 0.812224 | 4.720838e-51 | -8.615850e-47 |
| Msa1145020 | Msa1171310 | 0.833415 | 5.404133e-56 | -8.615850e-47 |
| Msa1171310 | Msa1201160 | 0.828049 | 1.115533e-54 | -8.615850e-47 |
| Msa1171310 | Msa1228190 | 0.833415 | 5.404557e-56 | -8.615850e-47 |
| Msa1171310 | Msa1294290 | 0.802166 | 6.382301e-49 | -8.615850e-47 |
| Msa1171310 | Msa1305510 | 0.830378 | 3.037848e-55 | -8.615850e-47 |
| Msa1171310 | Msa1369040 | 0.809785 | 1.593828e-50 | -8.615850e-47 |
| Msa1171310 | Msa1378870 | 0.855574 | 5.760178e-62 | -8.615850e-47 |
| Msa1171310 | Msa1389050 | 0.805817 | 1.111427e-49 | -8.615850e-47 |
| Msa1171310 | Msa1394890 | 0.815724 | 7.983981e-52 | -8.615850e-47 |
| Msa1171310 | Msa1406780 | 0.839142 | 1.891336e-57 | -8.615850e-47 |
| Msa1171310 | Msa1421550 | 0.840351 | 9.160694e-58 | -8.615850e-47 |
| Msa1171310 | Msa1423460 | 0.801323 | 9.504690e-49 | -8.615850e-47 |
| Msa1171310 | Msa1431850 | 0.843714 | 1.182145e-58 | -8.615850e-47 |
| Msa1171310 | Msa1435480 | 0.832705 | 8.116358e-56 | -8.615850e-47 |
| Msa1171310 | Msa1459530 | 0.802915 | 4.472724e-49 | -8.615850e-47 |
| Msa0487570 | Msa1171310 | 0.835190 | 1.938086e-56 | -8.615850e-47 |
| Msa0487630 | Msa1171310 | 0.822114 | 2.815971e-53 | -8.615850e-47 |
| Msa0492190 | Msa1171310 | 0.843182 | 1.640234e-58 | -8.615850e-47 |
| Msa0515950 | Msa1171310 | 0.857123 | 2.021798e-62 | -8.615850e-47 |
| Msa0523000 | Msa1171310 | 0.804913 | 1.719310e-49 | -8.615850e-47 |
| Msa0534930 | Msa1171310 | 0.825285 | 5.096194e-54 | -8.615850e-47 |
| Msa0535040 | Msa1171310 | 0.804532 | 2.065036e-49 | -8.615850e-47 |
| Msa0575740 | Msa1171310 | 0.809519 | 1.817609e-50 | -8.615850e-47 |
| Msa0591790 | Msa1171310 | 0.842286 | 2.836749e-58 | -8.615850e-47 |
| Msa0591800 | Msa1171310 | 0.849843 | 2.492550e-60 | -8.615850e-47 |
| Msa0594090 | Msa1171310 | 0.812511 | 4.086084e-51 | -8.615850e-47 |
| Msa0860160 | Msa1171310 | 0.844113 | 9.244895e-59 | -8.615850e-47 |
| Msa0860170 | Msa1171310 | 0.809026 | 2.319433e-50 | -8.615850e-47 |
| Msa0860280 | Msa1171310 | 0.823269 | 1.516955e-53 | -8.615850e-47 |
| Msa0867350 | Msa1171310 | 0.814503 | 1.490559e-51 | -8.615850e-47 |
| Msa0896350 | Msa1171310 | 0.813506 | 2.473313e-51 | -8.615850e-47 |
| Msa0898730 | Msa1171310 | 0.811246 | 7.704199e-51 | -8.615850e-47 |
| Msa0899950 | Msa1171310 | 0.807702 | 4.443272e-50 | -8.615850e-47 |
| Msa0916640 | Msa1171310 | 0.840390 | 8.949192e-58 | -8.615850e-47 |
| Msa0922750 | Msa1171310 | 0.830977 | 2.167155e-55 | -8.615850e-47 |
| Msa0927120 | Msa1171310 | 0.804353 | 2.249736e-49 | -8.615850e-47 |
| Msa0929870 | Msa1171310 | 0.817967 | 2.504977e-52 | -8.615850e-47 |
| Msa0941820 | Msa1171310 | 0.807829 | 4.174159e-50 | -8.615850e-47 |
| Msa0953540 | Msa1171310 | 0.847409 | 1.178017e-59 | -8.615850e-47 |
| Msa0961560 | Msa1171310 | 0.844807 | 6.013211e-59 | -8.615850e-47 |
| Msa0965310 | Msa1171310 | 0.804203 | 2.418372e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171310 | MtrunA17_Chr7g0266601 | 93.038 | 316 | 16 | 3 | 1 | 311 | 1 | 315 | 0.0 | 551 |
| Msa1171310 | MtrunA17_Chr1g0178441 | 52.212 | 452 | 199 | 8 | 9 | 449 | 18 | 463 | 8.92e-163 | 468 |
| Msa1171310 | MtrunA17_Chr7g0266591 | 96.053 | 152 | 6 | 0 | 305 | 456 | 6 | 157 | 1.92e-107 | 315 |
| Msa1171310 | MtrunA17_Chr1g0178421 | 56.634 | 309 | 119 | 6 | 5 | 307 | 3 | 302 | 4.29e-104 | 312 |
| Msa1171310 | MtrunA17_Chr1g0178431 | 78.986 | 138 | 27 | 1 | 305 | 440 | 6 | 143 | 4.66e-78 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171310 | AT3G52610.1 | 46.253 | 467 | 222 | 12 | 9 | 452 | 13 | 473 | 8.85e-139 | 407 |
Find 102 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTCAAATTTACGATTA+TGG | 0.178265 | 8_1:+932046 | Msa1171310:three_prime_UTR |
| CCTCTCTCAAATCACAATTT+TGG | 0.217496 | 8_1:+930562 | Msa1171310:CDS |
| TCATGGTTTGGGACCATCTA+TGG | 0.223620 | 8_1:+931865 | Msa1171310:CDS |
| ATGGGGTGTGCTTCGGTTCA+TGG | 0.237066 | 8_1:+931848 | Msa1171310:CDS |
| TGTGCTTCGGTTCATGGTTT+GGG | 0.291835 | 8_1:+931854 | Msa1171310:CDS |
| AATAACTGCAGCGGGATTAA+TGG | 0.304334 | 8_1:+930462 | Msa1171310:CDS |
| GTGTGCTTCGGTTCATGGTT+TGG | 0.307756 | 8_1:+931853 | Msa1171310:CDS |
| GTCCTCAAACACCGACATTA+TGG | 0.308407 | 8_1:-931771 | None:intergenic |
| GCGATTGAGGATCTTGTTCC+TGG | 0.311297 | 8_1:+930017 | Msa1171310:CDS |
| TACTTCATCATATGCATGTT+TGG | 0.345683 | 8_1:+932094 | Msa1171310:three_prime_UTR |
| CGACATTATGGATGTTCTTA+AGG | 0.349557 | 8_1:-931759 | None:intergenic |
| TGTTAATAAGCTCTTGCATT+TGG | 0.357546 | 8_1:-931961 | None:intergenic |
| GCAAAGGGAAGAAACATATC+TGG | 0.359281 | 8_1:+930042 | Msa1171310:CDS |
| TGAAAACGAGAAATATCAAT+AGG | 0.367993 | 8_1:-929561 | None:intergenic |
| GAACTAGCCAAGAGGACTTA+TGG | 0.372116 | 8_1:+931635 | Msa1171310:CDS |
| ATCTAGCCTTCCATCCCTTA+TGG | 0.374376 | 8_1:-931900 | None:intergenic |
| ATCCATAATGTCGGTGTTTG+AGG | 0.408361 | 8_1:+931769 | Msa1171310:CDS |
| ACCAGGGTTCTCTATGGCCT+TGG | 0.408629 | 8_1:-931726 | None:intergenic |
| AGTAAACCTAAAAGAATTAA+CGG | 0.410580 | 8_1:-930093 | None:intergenic |
| ATCCATCCCCGTTGCACTCT+AGG | 0.410966 | 8_1:+931936 | Msa1171310:CDS |
| TTTGGTCCCTAGAGTGCAAC+GGG | 0.411997 | 8_1:-931943 | None:intergenic |
| TACGATCTTGCCACGTGTTA+CGG | 0.414492 | 8_1:-929797 | None:intergenic |
| CTTATCATTGTTCTTAGAGT+TGG | 0.418380 | 8_1:-931666 | None:intergenic |
| TTATTACCCTCACTGATTGC+CGG | 0.431014 | 8_1:+930524 | Msa1171310:CDS |
| TGTCAAACCAGGGTTCTCTA+TGG | 0.431401 | 8_1:-931732 | None:intergenic |
| CACTCCGTTGCAACAAATCA+TGG | 0.432383 | 8_1:+929761 | Msa1171310:CDS |
| TGTTGAGGATGTTGTTCCTT+TGG | 0.434930 | 8_1:+929995 | Msa1171310:CDS |
| CTTAAGGATGATGTCAAACC+AGG | 0.439362 | 8_1:-931743 | None:intergenic |
| ATGAAGGCTATTCTTATTGA+AGG | 0.442750 | 8_1:+931986 | Msa1171310:CDS |
| AGCCATAATCGTAAATTTGA+AGG | 0.446489 | 8_1:-932048 | None:intergenic |
| AAAGCCATTCGTGGTGGCAC+TGG | 0.454895 | 8_1:+929507 | Msa1171310:CDS |
| TGTTGTTCCTTTGGCGATTG+AGG | 0.458789 | 8_1:+930004 | Msa1171310:CDS |
| AGGAGTGTGGGATGTAAGAA+AGG | 0.459967 | 8_1:-929673 | None:intergenic |
| CATGGTTTGGGACCATCTAT+GGG | 0.463005 | 8_1:+931866 | Msa1171310:CDS |
| GGACTACATGGGGTGTGCTT+CGG | 0.472358 | 8_1:+931841 | Msa1171310:CDS |
| AAGAATAGTTCTAAGAAGTA+CGG | 0.474242 | 8_1:+930499 | Msa1171310:CDS |
| TCAACAACCACGTGATCAAA+GGG | 0.475334 | 8_1:+931597 | Msa1171310:CDS |
| TCCATCCCCGTTGCACTCTA+GGG | 0.489654 | 8_1:+931937 | Msa1171310:CDS |
| AAATGCTCCATAAGTCCTCT+TGG | 0.502139 | 8_1:-931642 | None:intergenic |
| TGTTTCTTCCCTTTGCGACC+AGG | 0.508762 | 8_1:-930035 | None:intergenic |
| ATGTCGACGGTTGAAACAAA+AGG | 0.509382 | 8_1:+929450 | Msa1171310:CDS |
| TCCCTAGAGTGCAACGGGGA+TGG | 0.509671 | 8_1:-931938 | None:intergenic |
| TTCAGGGTTGTAAGCAGAGT+AGG | 0.515071 | 8_1:+930422 | Msa1171310:intron |
| ATCTTGTTCCTGGTCGCAAA+GGG | 0.516393 | 8_1:+930027 | Msa1171310:CDS |
| CTCAACAACCACGTGATCAA+AGG | 0.519923 | 8_1:+931596 | Msa1171310:CDS |
| GCAACAAGAGGTTGGAGTAG+AGG | 0.526477 | 8_1:+931820 | Msa1171310:CDS |
| GGAGAATGTTGTTGCTGTTG+AGG | 0.528626 | 8_1:+929980 | Msa1171310:CDS |
| CTTTGATCACGTGGTTGTTG+AGG | 0.530369 | 8_1:-931595 | None:intergenic |
| AGAATAGTTCTAAGAAGTAC+GGG | 0.531546 | 8_1:+930500 | Msa1171310:CDS |
| AATGCCAGTGCCACCACGAA+TGG | 0.537676 | 8_1:-929511 | None:intergenic |
| TTGACACCATAAGGGATGGA+AGG | 0.538475 | 8_1:+931894 | Msa1171310:CDS |
| AGAGCTTATTAACAAGATGA+AGG | 0.539515 | 8_1:+931970 | Msa1171310:CDS |
| GATCTTGTTCCTGGTCGCAA+AGG | 0.543662 | 8_1:+930026 | Msa1171310:CDS |
| TGTGGAGCAATAACTGCAGC+GGG | 0.545669 | 8_1:+930454 | Msa1171310:CDS |
| AAGGCTATTCTTATTGAAGG+TGG | 0.558507 | 8_1:+931989 | Msa1171310:CDS |
| GAAACAAAAGGTCGTAATGT+TGG | 0.558743 | 8_1:+929462 | Msa1171310:CDS |
| CATGAACTTTCTTATGTCCA+AGG | 0.562719 | 8_1:+931709 | Msa1171310:CDS |
| AAAGGAGAAAATAGTGTCTG+TGG | 0.563282 | 8_1:-929655 | None:intergenic |
| AATTGTGATTTGAGAGAGGT+GGG | 0.571654 | 8_1:-930558 | None:intergenic |
| TGTTCCATGATTTGTTGCAA+CGG | 0.573358 | 8_1:-929765 | None:intergenic |
| GGTTGGAGTAGAGGACTACA+TGG | 0.579061 | 8_1:+931829 | Msa1171310:CDS |
| GGCAAGATGCAACAAGAGGT+TGG | 0.579461 | 8_1:+931812 | Msa1171310:CDS |
| GAGGACACGGTGGTTGATGA+CGG | 0.580211 | 8_1:+931788 | Msa1171310:CDS |
| AAATTGTGATTTGAGAGAGG+TGG | 0.580439 | 8_1:-930559 | None:intergenic |
| TAGCTTAAGTATTATGTCGA+CGG | 0.581330 | 8_1:+929437 | None:intergenic |
| CAAAGGGAAGAAACATATCT+GGG | 0.581978 | 8_1:+930043 | Msa1171310:CDS |
| CCAAAATTGTGATTTGAGAG+AGG | 0.582441 | 8_1:-930562 | None:intergenic |
| TGAGAGAGGTGGGTCAAGAG+TGG | 0.586797 | 8_1:-930548 | None:intergenic |
| AGCTGGTGCAAAGCCATTCG+TGG | 0.588805 | 8_1:+929498 | Msa1171310:CDS |
| GATCACGTGGTTGTTGAGGA+TGG | 0.593465 | 8_1:-931591 | None:intergenic |
| AAACATGTCAGTATCAATAC+CGG | 0.597857 | 8_1:-929820 | None:intergenic |
| ACAAAAGGTCGTAATGTTGG+TGG | 0.598123 | 8_1:+929465 | Msa1171310:CDS |
| TTGGTGGCACAGAATGTAGC+TGG | 0.609381 | 8_1:+929481 | Msa1171310:CDS |
| CTTAAGAACATCCATAATGT+CGG | 0.610419 | 8_1:+931760 | Msa1171310:CDS |
| AAATGCTAGGTCTTCACAAG+TGG | 0.613957 | 8_1:+930139 | Msa1171310:CDS |
| AATGTCGGTGTTTGAGGACA+CGG | 0.619648 | 8_1:+931775 | Msa1171310:CDS |
| ATTTGGTCCCTAGAGTGCAA+CGG | 0.621651 | 8_1:-931944 | None:intergenic |
| ACAAGATCCTCAATCGCCAA+AGG | 0.623888 | 8_1:-930011 | None:intergenic |
| AGTGGACCGGCAATCAGTGA+GGG | 0.635780 | 8_1:-930530 | None:intergenic |
| GTGTGGAGCAATAACTGCAG+CGG | 0.636382 | 8_1:+930453 | Msa1171310:CDS |
| AACACGTGGCAAGATCGTAC+CGG | 0.650719 | 8_1:+929801 | Msa1171310:CDS |
| AAGAAACATATCTGGGAGCG+TGG | 0.650935 | 8_1:+930050 | Msa1171310:CDS |
| CAATCAAACTGATACCAAGA+GGG | 0.655063 | 8_1:+930175 | Msa1171310:CDS |
| TCCAAGGCCATAGAGAACCC+TGG | 0.655783 | 8_1:+931725 | Msa1171310:CDS |
| AACAACCACGTGATCAAAGG+GGG | 0.655827 | 8_1:+931599 | Msa1171310:CDS |
| CGGCGGCAAGATGCAACAAG+AGG | 0.657442 | 8_1:+931808 | Msa1171310:CDS |
| GTTGGAGTAGAGGACTACAT+GGG | 0.661686 | 8_1:+931830 | Msa1171310:CDS |
| TCAATCAAACTGATACCAAG+AGG | 0.661853 | 8_1:+930174 | Msa1171310:CDS |
| GCTTGTGTTGATGAAAGATG+AGG | 0.663457 | 8_1:+929950 | Msa1171310:CDS |
| GAGTGGACCGGCAATCAGTG+AGG | 0.664520 | 8_1:-930531 | None:intergenic |
| CAGAGTAGGATTAAGCTGTG+TGG | 0.667291 | 8_1:+930436 | Msa1171310:CDS |
| GAGGTGGGTCAAGAGTGGAC+CGG | 0.670737 | 8_1:-930543 | None:intergenic |
| TTAAGGATGATGTCAAACCA+GGG | 0.675705 | 8_1:-931742 | None:intergenic |
| ATGAACTGAACCGTAACACG+TGG | 0.676263 | 8_1:+929787 | Msa1171310:CDS |
| TGGTGCAAAGCCATTCGTGG+TGG | 0.684258 | 8_1:+929501 | Msa1171310:CDS |
| GTCTTTGGGAACTAGCCAAG+AGG | 0.697035 | 8_1:+931627 | Msa1171310:CDS |
| CAACAACCACGTGATCAAAG+GGG | 0.713289 | 8_1:+931598 | Msa1171310:CDS |
| TTGGAGTAGAGGACTACATG+GGG | 0.733565 | 8_1:+931831 | Msa1171310:CDS |
| GACACGGTGGTTGATGACGG+CGG | 0.738900 | 8_1:+931791 | Msa1171310:CDS |
| AGCATGCGATAGAACAACTG+CGG | 0.738953 | 8_1:+929908 | Msa1171310:CDS |
| GTCGGTGTTTGAGGACACGG+TGG | 0.755614 | 8_1:+931778 | Msa1171310:CDS |
| TTGGTCCCTAGAGTGCAACG+GGG | 0.825259 | 8_1:-931942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATACAAATATCAAATTAAT+TGG | - | chr8_1:930383-930402 | None:intergenic | 15.0% |
| !!! | ACTTTTGAATGATTTTTTTA+AGG | + | chr8_1:930855-930874 | Msa1171310:intron | 15.0% |
| !! | TAAATTAACACTTTACATAT+AGG | - | chr8_1:931377-931396 | None:intergenic | 15.0% |
| !!! | TTAAAAGTTTTTCTTTTTGA+AGG | + | chr8_1:931394-931413 | Msa1171310:intron | 15.0% |
| !! | AGTAAACCTAAAAGAATTAA+CGG | - | chr8_1:930096-930115 | None:intergenic | 20.0% |
| !! | TTAATGATACAAAAAATGCT+AGG | + | chr8_1:930126-930145 | Msa1171310:CDS | 20.0% |
| !! | ACCAAACATAAAATAGATTA+GGG | - | chr8_1:930216-930235 | None:intergenic | 20.0% |
| !! | AACCAAACATAAAATAGATT+AGG | - | chr8_1:930217-930236 | None:intergenic | 20.0% |
| !!! | TAATCTATTTTATGTTTGGT+TGG | + | chr8_1:930216-930235 | Msa1171310:intron | 20.0% |
| !!! | CTCATATATATGTTTGATTT+TGG | - | chr8_1:930339-930358 | None:intergenic | 20.0% |
| !! | TGAAATGAAATTTGTATTTC+AGG | + | chr8_1:930405-930424 | Msa1171310:intron | 20.0% |
| !! | GAAATGAAATTTGTATTTCA+GGG | + | chr8_1:930406-930425 | Msa1171310:intron | 20.0% |
| !! | TAGAACCATTAATATGTATA+TGG | + | chr8_1:930674-930693 | Msa1171310:intron | 20.0% |
| !! | AAATGTTAACAAATGTCTAT+AGG | - | chr8_1:931265-931284 | None:intergenic | 20.0% |
| !! | GATGATTTAGAAATATTGAT+AGG | + | chr8_1:931532-931551 | Msa1171310:intron | 20.0% |
| ! | TGAAAACGAGAAATATCAAT+AGG | - | chr8_1:929564-929583 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTGCAAGAATGT+TGG | - | chr8_1:929736-929755 | None:intergenic | 25.0% |
| !!! | AAGAATAGTTCTAAGAAGTA+CGG | + | chr8_1:930499-930518 | Msa1171310:CDS | 25.0% |
| !! | GAGAACAGAAAATTGATTTA+TGG | + | chr8_1:930627-930646 | Msa1171310:intron | 25.0% |
| ! | CACTTCCATATACATATTAA+TGG | - | chr8_1:930682-930701 | None:intergenic | 25.0% |
| ! | CATTAATATGTATATGGAAG+TGG | + | chr8_1:930680-930699 | Msa1171310:intron | 25.0% |
| ! | AATAAGGAATGAATGTTGAT+TGG | - | chr8_1:930729-930748 | None:intergenic | 25.0% |
| !! | AGTTTTTCTTTTCACGAATA+AGG | - | chr8_1:930745-930764 | None:intergenic | 25.0% |
| ! | TCCACTAACAAAAAAAAAAG+AGG | + | chr8_1:931126-931145 | Msa1171310:intron | 25.0% |
| ! | CCACTAACAAAAAAAAAAGA+GGG | + | chr8_1:931127-931146 | Msa1171310:intron | 25.0% |
| ! | AAACGACTCTTTCAATTTAA+TGG | - | chr8_1:931187-931206 | None:intergenic | 25.0% |
| !!! | AAGTTTTTCTTTTTGAAGGA+AGG | + | chr8_1:931398-931417 | Msa1171310:intron | 25.0% |
| !! | ATTTTGTAGTTTGTGAAGTG+AGG | - | chr8_1:929589-929608 | None:intergenic | 30.0% |
| AAACATGTCAGTATCAATAC+CGG | - | chr8_1:929823-929842 | None:intergenic | 30.0% | |
| TATGCCTGATGAAAAAACAT+GGG | + | chr8_1:929860-929879 | Msa1171310:CDS | 30.0% | |
| ! | GTTACTCCGTTAATTCTTTT+AGG | + | chr8_1:930087-930106 | Msa1171310:CDS | 30.0% |
| !! | TTTTACATCTAAAACCCTCT+TGG | - | chr8_1:930192-930211 | None:intergenic | 30.0% |
| ! | GCCCTAATCTATTTTATGTT+TGG | + | chr8_1:930212-930231 | Msa1171310:intron | 30.0% |
| ! | ATGCAGTTTTTGCAAAATCA+TGG | - | chr8_1:930279-930298 | None:intergenic | 30.0% |
| !! | AGAATAGTTCTAAGAAGTAC+GGG | + | chr8_1:930500-930519 | Msa1171310:CDS | 30.0% |
| ! | CATTTAAGATGAGATAGAGA+GGG | - | chr8_1:930962-930981 | None:intergenic | 30.0% |
| ! | TCATTTAAGATGAGATAGAG+AGG | - | chr8_1:930963-930982 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTAGTGGATGAAG+TGG | - | chr8_1:931121-931140 | None:intergenic | 30.0% |
| !!! | CCCTCTTTTTTTTTTGTTAG+TGG | - | chr8_1:931130-931149 | None:intergenic | 30.0% |
| GTGCATATGTTTCAATGTAT+AGG | + | chr8_1:931554-931573 | Msa1171310:intron | 30.0% | |
| CTTATCATTGTTCTTAGAGT+TGG | - | chr8_1:931669-931688 | None:intergenic | 30.0% | |
| CTTAAGAACATCCATAATGT+CGG | + | chr8_1:931760-931779 | Msa1171310:CDS | 30.0% | |
| TGTTAATAAGCTCTTGCATT+TGG | - | chr8_1:931964-931983 | None:intergenic | 30.0% | |
| AGAGCTTATTAACAAGATGA+AGG | + | chr8_1:931970-931989 | Msa1171310:CDS | 30.0% | |
| ATGAAGGCTATTCTTATTGA+AGG | + | chr8_1:931986-932005 | Msa1171310:CDS | 30.0% | |
| CACCTTCAAATTTACGATTA+TGG | + | chr8_1:932046-932065 | Msa1171310:three_prime_UTR | 30.0% | |
| AGCCATAATCGTAAATTTGA+AGG | - | chr8_1:932051-932070 | None:intergenic | 30.0% | |
| TACTTCATCATATGCATGTT+TGG | + | chr8_1:932094-932113 | Msa1171310:three_prime_UTR | 30.0% | |
| GAAACAAAAGGTCGTAATGT+TGG | + | chr8_1:929462-929481 | Msa1171310:CDS | 35.0% | |
| ! | TTTTGATCTGAGGATAGGAT+GGG | - | chr8_1:929613-929632 | None:intergenic | 35.0% |
| AAAGGAGAAAATAGTGTCTG+TGG | - | chr8_1:929658-929677 | None:intergenic | 35.0% | |
| !! | GATTTTGATGAAAGGAGTGT+GGG | - | chr8_1:929688-929707 | None:intergenic | 35.0% |
| !! | TGAGACTCGATTTTGATGAA+AGG | - | chr8_1:929696-929715 | None:intergenic | 35.0% |
| !! | TGTTCCATGATTTGTTGCAA+CGG | - | chr8_1:929768-929787 | None:intergenic | 35.0% |
| CTATGCCTGATGAAAAAACA+TGG | + | chr8_1:929859-929878 | Msa1171310:CDS | 35.0% | |
| GATGAAAGATGAGGAAAAAG+AGG | + | chr8_1:929959-929978 | Msa1171310:CDS | 35.0% | |
| CAAAGGGAAGAAACATATCT+GGG | + | chr8_1:930043-930062 | Msa1171310:CDS | 35.0% | |
| TCAATCAAACTGATACCAAG+AGG | + | chr8_1:930174-930193 | Msa1171310:CDS | 35.0% | |
| CAATCAAACTGATACCAAGA+GGG | + | chr8_1:930175-930194 | Msa1171310:CDS | 35.0% | |
| CATCGTACAAGATTAAGTAC+CGG | + | chr8_1:930247-930266 | Msa1171310:intron | 35.0% | |
| ATCGTACAAGATTAAGTACC+GGG | + | chr8_1:930248-930267 | Msa1171310:intron | 35.0% | |
| AATTGTGATTTGAGAGAGGT+GGG | - | chr8_1:930561-930580 | None:intergenic | 35.0% | |
| AAATTGTGATTTGAGAGAGG+TGG | - | chr8_1:930562-930581 | None:intergenic | 35.0% | |
| CCAAAATTGTGATTTGAGAG+AGG | - | chr8_1:930565-930584 | None:intergenic | 35.0% | |
| ! | CCTCTCTCAAATCACAATTT+TGG | + | chr8_1:930562-930581 | Msa1171310:CDS | 35.0% |
| TATGTATATGGAAGTGGAAG+TGG | + | chr8_1:930686-930705 | Msa1171310:intron | 35.0% | |
| ! | AGGAATGAATGTTGATTGGT+CGG | - | chr8_1:930725-930744 | None:intergenic | 35.0% |
| TGCGATATTGTTCGATTGAA+TGG | + | chr8_1:931048-931067 | Msa1171310:intron | 35.0% | |
| TAAATTCGCACGCAATTGTA+AGG | - | chr8_1:931088-931107 | None:intergenic | 35.0% | |
| ATCAATTTCCTTGATACACG+AGG | + | chr8_1:931321-931340 | Msa1171310:intron | 35.0% | |
| ! | TGATAAGCACTTTTCAGACA+TGG | + | chr8_1:931682-931701 | Msa1171310:CDS | 35.0% |
| CATGAACTTTCTTATGTCCA+AGG | + | chr8_1:931709-931728 | Msa1171310:CDS | 35.0% | |
| TTAAGGATGATGTCAAACCA+GGG | - | chr8_1:931745-931764 | None:intergenic | 35.0% | |
| CGACATTATGGATGTTCTTA+AGG | - | chr8_1:931762-931781 | None:intergenic | 35.0% | |
| GTGTCAAAAATACCCATAGA+TGG | - | chr8_1:931881-931900 | None:intergenic | 35.0% | |
| !! | TGGGTATTTTTGACACCATA+AGG | + | chr8_1:931885-931904 | Msa1171310:CDS | 35.0% |
| !! | GGGTATTTTTGACACCATAA+GGG | + | chr8_1:931886-931905 | Msa1171310:CDS | 35.0% |
| ! | ATTTTTGACACCATAAGGGA+TGG | + | chr8_1:931890-931909 | Msa1171310:CDS | 35.0% |
| AAGGCTATTCTTATTGAAGG+TGG | + | chr8_1:931989-932008 | Msa1171310:CDS | 35.0% | |
| ATGTCGACGGTTGAAACAAA+AGG | + | chr8_1:929450-929469 | Msa1171310:CDS | 40.0% | |
| ACAAAAGGTCGTAATGTTGG+TGG | + | chr8_1:929465-929484 | Msa1171310:CDS | 40.0% | |
| !! | GTTTTGATCTGAGGATAGGA+TGG | - | chr8_1:929614-929633 | None:intergenic | 40.0% |
| !! | TGGAGTTTTGATCTGAGGAT+AGG | - | chr8_1:929618-929637 | None:intergenic | 40.0% |
| !! | ATGTGTGGAGTTTTGATCTG+AGG | - | chr8_1:929623-929642 | None:intergenic | 40.0% |
| ! | TGGATGATGATGATGATGTG+TGG | - | chr8_1:929638-929657 | None:intergenic | 40.0% |
| !! | CGATTTTGATGAAAGGAGTG+TGG | - | chr8_1:929689-929708 | None:intergenic | 40.0% |
| !!! | ACCACCCATGTTTTTTCATC+AGG | - | chr8_1:929867-929886 | None:intergenic | 40.0% |
| TGATGAAAAAACATGGGTGG+TGG | + | chr8_1:929866-929885 | Msa1171310:CDS | 40.0% | |
| ! | GCTTGTGTTGATGAAAGATG+AGG | + | chr8_1:929950-929969 | Msa1171310:CDS | 40.0% |
| TGTTGAGGATGTTGTTCCTT+TGG | + | chr8_1:929995-930014 | Msa1171310:CDS | 40.0% | |
| GCAAAGGGAAGAAACATATC+TGG | + | chr8_1:930042-930061 | Msa1171310:CDS | 40.0% | |
| AAATGCTAGGTCTTCACAAG+TGG | + | chr8_1:930139-930158 | Msa1171310:CDS | 40.0% | |
| TGCAAAATCATGGTGATTCC+CGG | - | chr8_1:930269-930288 | None:intergenic | 40.0% | |
| AATAACTGCAGCGGGATTAA+TGG | + | chr8_1:930462-930481 | Msa1171310:CDS | 40.0% | |
| ! | TTATTACCCTCACTGATTGC+CGG | + | chr8_1:930524-930543 | Msa1171310:CDS | 40.0% |
| AGAAAAACTAACTCTGCAGC+TGG | + | chr8_1:930756-930775 | Msa1171310:intron | 40.0% | |
| CAAAGTAACCTCGTGTATCA+AGG | - | chr8_1:931332-931351 | None:intergenic | 40.0% | |
| CTTGATACACGAGGTTACTT+TGG | + | chr8_1:931330-931349 | Msa1171310:intron | 40.0% | |
| TCAACAACCACGTGATCAAA+GGG | + | chr8_1:931597-931616 | Msa1171310:CDS | 40.0% | |
| AAATGCTCCATAAGTCCTCT+TGG | - | chr8_1:931645-931664 | None:intergenic | 40.0% | |
| CTTAAGGATGATGTCAAACC+AGG | - | chr8_1:931746-931765 | None:intergenic | 40.0% | |
| ! | ATCCATAATGTCGGTGTTTG+AGG | + | chr8_1:931769-931788 | Msa1171310:CDS | 40.0% |
| TGAAGGTGGAAAAACATACG+AGG | + | chr8_1:932003-932022 | Msa1171310:CDS | 40.0% | |
| ! | AGGAGTGTGGGATGTAAGAA+AGG | - | chr8_1:929676-929695 | None:intergenic | 45.0% |
| CACTCCGTTGCAACAAATCA+TGG | + | chr8_1:929761-929780 | Msa1171310:CDS | 45.0% | |
| ATGAACTGAACCGTAACACG+TGG | + | chr8_1:929787-929806 | Msa1171310:CDS | 45.0% | |
| TACGATCTTGCCACGTGTTA+CGG | - | chr8_1:929800-929819 | None:intergenic | 45.0% | |
| GCCTGATGAAAAAACATGGG+TGG | + | chr8_1:929863-929882 | Msa1171310:CDS | 45.0% | |
| AGCATGCGATAGAACAACTG+CGG | + | chr8_1:929908-929927 | Msa1171310:CDS | 45.0% | |
| ! | GGAGAATGTTGTTGCTGTTG+AGG | + | chr8_1:929980-929999 | Msa1171310:CDS | 45.0% |
| TGTTGTTCCTTTGGCGATTG+AGG | + | chr8_1:930004-930023 | Msa1171310:CDS | 45.0% | |
| ACAAGATCCTCAATCGCCAA+AGG | - | chr8_1:930014-930033 | None:intergenic | 45.0% | |
| ATCTTGTTCCTGGTCGCAAA+GGG | + | chr8_1:930027-930046 | Msa1171310:CDS | 45.0% | |
| AAGAAACATATCTGGGAGCG+TGG | + | chr8_1:930050-930069 | Msa1171310:CDS | 45.0% | |
| TTCAGGGTTGTAAGCAGAGT+AGG | + | chr8_1:930422-930441 | Msa1171310:intron | 45.0% | |
| CAGAGTAGGATTAAGCTGTG+TGG | + | chr8_1:930436-930455 | Msa1171310:CDS | 45.0% | |
| GCAAGCAAAACTTTGCGTAC+AGG | + | chr8_1:930811-930830 | Msa1171310:intron | 45.0% | |
| CTTTGATCACGTGGTTGTTG+AGG | - | chr8_1:931598-931617 | None:intergenic | 45.0% | |
| CTCAACAACCACGTGATCAA+AGG | + | chr8_1:931596-931615 | Msa1171310:CDS | 45.0% | |
| CAACAACCACGTGATCAAAG+GGG | + | chr8_1:931598-931617 | Msa1171310:CDS | 45.0% | |
| AACAACCACGTGATCAAAGG+GGG | + | chr8_1:931599-931618 | Msa1171310:CDS | 45.0% | |
| TCAAAGGGGGAGAAAGTCTT+TGG | + | chr8_1:931612-931631 | Msa1171310:CDS | 45.0% | |
| CAAAGGGGGAGAAAGTCTTT+GGG | + | chr8_1:931613-931632 | Msa1171310:CDS | 45.0% | |
| GAACTAGCCAAGAGGACTTA+TGG | + | chr8_1:931635-931654 | Msa1171310:CDS | 45.0% | |
| TGTCAAACCAGGGTTCTCTA+TGG | - | chr8_1:931735-931754 | None:intergenic | 45.0% | |
| GTCCTCAAACACCGACATTA+TGG | - | chr8_1:931774-931793 | None:intergenic | 45.0% | |
| ! | AATGTCGGTGTTTGAGGACA+CGG | + | chr8_1:931775-931794 | Msa1171310:CDS | 45.0% |
| GTTGGAGTAGAGGACTACAT+GGG | + | chr8_1:931830-931849 | Msa1171310:CDS | 45.0% | |
| TTGGAGTAGAGGACTACATG+GGG | + | chr8_1:931831-931850 | Msa1171310:CDS | 45.0% | |
| TGTGCTTCGGTTCATGGTTT+GGG | + | chr8_1:931854-931873 | Msa1171310:CDS | 45.0% | |
| ! | TCATGGTTTGGGACCATCTA+TGG | + | chr8_1:931865-931884 | Msa1171310:CDS | 45.0% |
| ! | CATGGTTTGGGACCATCTAT+GGG | + | chr8_1:931866-931885 | Msa1171310:CDS | 45.0% |
| TTGACACCATAAGGGATGGA+AGG | + | chr8_1:931894-931913 | Msa1171310:CDS | 45.0% | |
| ! | ATCTAGCCTTCCATCCCTTA+TGG | - | chr8_1:931903-931922 | None:intergenic | 45.0% |
| ATTTGGTCCCTAGAGTGCAA+CGG | - | chr8_1:931947-931966 | None:intergenic | 45.0% | |
| ! | TTGGTGGCACAGAATGTAGC+TGG | + | chr8_1:929481-929500 | Msa1171310:CDS | 50.0% |
| AACACGTGGCAAGATCGTAC+CGG | + | chr8_1:929801-929820 | Msa1171310:CDS | 50.0% | |
| GCGATTGAGGATCTTGTTCC+TGG | + | chr8_1:930017-930036 | Msa1171310:CDS | 50.0% | |
| GATCTTGTTCCTGGTCGCAA+AGG | + | chr8_1:930026-930045 | Msa1171310:CDS | 50.0% | |
| TGTTTCTTCCCTTTGCGACC+AGG | - | chr8_1:930038-930057 | None:intergenic | 50.0% | |
| GTGTGGAGCAATAACTGCAG+CGG | + | chr8_1:930453-930472 | Msa1171310:CDS | 50.0% | |
| TGTGGAGCAATAACTGCAGC+GGG | + | chr8_1:930454-930473 | Msa1171310:CDS | 50.0% | |
| GATCACGTGGTTGTTGAGGA+TGG | - | chr8_1:931594-931613 | None:intergenic | 50.0% | |
| TTTCTCCCCCTTTGATCACG+TGG | - | chr8_1:931607-931626 | None:intergenic | 50.0% | |
| ! | GTCTTTGGGAACTAGCCAAG+AGG | + | chr8_1:931627-931646 | Msa1171310:CDS | 50.0% |
| GGCAAGATGCAACAAGAGGT+TGG | + | chr8_1:931812-931831 | Msa1171310:CDS | 50.0% | |
| GCAACAAGAGGTTGGAGTAG+AGG | + | chr8_1:931820-931839 | Msa1171310:CDS | 50.0% | |
| GGTTGGAGTAGAGGACTACA+TGG | + | chr8_1:931829-931848 | Msa1171310:CDS | 50.0% | |
| GTGTGCTTCGGTTCATGGTT+TGG | + | chr8_1:931853-931872 | Msa1171310:CDS | 50.0% | |
| TTTGGTCCCTAGAGTGCAAC+GGG | - | chr8_1:931946-931965 | None:intergenic | 50.0% | |
| AGCTGGTGCAAAGCCATTCG+TGG | + | chr8_1:929498-929517 | Msa1171310:CDS | 55.0% | |
| TGGTGCAAAGCCATTCGTGG+TGG | + | chr8_1:929501-929520 | Msa1171310:CDS | 55.0% | |
| AAAGCCATTCGTGGTGGCAC+TGG | + | chr8_1:929507-929526 | Msa1171310:CDS | 55.0% | |
| AATGCCAGTGCCACCACGAA+TGG | - | chr8_1:929514-929533 | None:intergenic | 55.0% | |
| AGTGGACCGGCAATCAGTGA+GGG | - | chr8_1:930533-930552 | None:intergenic | 55.0% | |
| TGAGAGAGGTGGGTCAAGAG+TGG | - | chr8_1:930551-930570 | None:intergenic | 55.0% | |
| TCCAAGGCCATAGAGAACCC+TGG | + | chr8_1:931725-931744 | Msa1171310:CDS | 55.0% | |
| ACCAGGGTTCTCTATGGCCT+TGG | - | chr8_1:931729-931748 | None:intergenic | 55.0% | |
| !! | GAGGACACGGTGGTTGATGA+CGG | + | chr8_1:931788-931807 | Msa1171310:CDS | 55.0% |
| GGACTACATGGGGTGTGCTT+CGG | + | chr8_1:931841-931860 | Msa1171310:CDS | 55.0% | |
| ATGGGGTGTGCTTCGGTTCA+TGG | + | chr8_1:931848-931867 | Msa1171310:CDS | 55.0% | |
| ATCCATCCCCGTTGCACTCT+AGG | + | chr8_1:931936-931955 | Msa1171310:CDS | 55.0% | |
| TCCATCCCCGTTGCACTCTA+GGG | + | chr8_1:931937-931956 | Msa1171310:CDS | 55.0% | |
| TTGGTCCCTAGAGTGCAACG+GGG | - | chr8_1:931945-931964 | None:intergenic | 55.0% | |
| GAGTGGACCGGCAATCAGTG+AGG | - | chr8_1:930534-930553 | None:intergenic | 60.0% | |
| GAGGTGGGTCAAGAGTGGAC+CGG | - | chr8_1:930546-930565 | None:intergenic | 60.0% | |
| ! | GTCGGTGTTTGAGGACACGG+TGG | + | chr8_1:931778-931797 | Msa1171310:CDS | 60.0% |
| !! | GACACGGTGGTTGATGACGG+CGG | + | chr8_1:931791-931810 | Msa1171310:CDS | 60.0% |
| CGGCGGCAAGATGCAACAAG+AGG | + | chr8_1:931808-931827 | Msa1171310:CDS | 60.0% | |
| TCCCTAGAGTGCAACGGGGA+TGG | - | chr8_1:931941-931960 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 929450 | 932184 | 929450 | ID=Msa1171310;Name=Msa1171310 |
| chr8_1 | mRNA | 929450 | 932184 | 929450 | ID=Msa1171310-mRNA-1;Parent=Msa1171310;Name=Msa1171310-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0.5|0.33|1|1|1|3|151|456 |
| chr8_1 | exon | 929450 | 930205 | 929450 | ID=Msa1171310-mRNA-1:exon:261;Parent=Msa1171310-mRNA-1 |
| chr8_1 | exon | 930427 | 930583 | 930427 | ID=Msa1171310-mRNA-1:exon:262;Parent=Msa1171310-mRNA-1 |
| chr8_1 | exon | 931576 | 932184 | 931576 | ID=Msa1171310-mRNA-1:exon:263;Parent=Msa1171310-mRNA-1 |
| chr8_1 | CDS | 929450 | 930205 | 929450 | ID=Msa1171310-mRNA-1:cds;Parent=Msa1171310-mRNA-1 |
| chr8_1 | CDS | 930427 | 930583 | 930427 | ID=Msa1171310-mRNA-1:cds;Parent=Msa1171310-mRNA-1 |
| chr8_1 | CDS | 931576 | 932033 | 931576 | ID=Msa1171310-mRNA-1:cds;Parent=Msa1171310-mRNA-1 |
| chr8_1 | three_prime_UTR | 932034 | 932184 | 932034 | ID=Msa1171310-mRNA-1:three_prime_utr;Parent=Msa1171310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
