Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130290 | XP_003626549.2 | 92.857 | 336 | 3 | 2 | 27 | 341 | 1 | 336 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130290 | sp|Q654D9|CSTR1_ORYSJ | 73.248 | 314 | 63 | 2 | 27 | 319 | 1 | 314 | 2.80e-170 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130290 | G7L417 | 92.857 | 336 | 3 | 2 | 27 | 341 | 1 | 336 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000570 | Msa1130290 | 0.996220 | 7.870674e-225 | -8.615850e-47 |
| Msa0743120 | Msa1130290 | 0.800070 | 1.712414e-48 | -8.615850e-47 |
| Msa0795890 | Msa1130290 | 0.804539 | 2.058083e-49 | -8.615850e-47 |
| Msa0827470 | Msa1130290 | -0.807451 | 5.023834e-50 | -8.615850e-47 |
| Msa0833670 | Msa1130290 | 0.802937 | 4.426857e-49 | -8.615850e-47 |
| Msa0431020 | Msa1130290 | -0.819079 | 1.401983e-52 | -8.615850e-47 |
| Msa1072530 | Msa1130290 | 0.808833 | 2.549794e-50 | -8.615850e-47 |
| Msa1130290 | Msa1132860 | 0.805790 | 1.125819e-49 | -8.615850e-47 |
| Msa1130290 | Msa1207460 | 0.804510 | 2.087164e-49 | -8.615850e-47 |
| Msa1130290 | Msa1229850 | -0.811765 | 5.942787e-51 | -8.615850e-47 |
| Msa1130290 | Msa1375700 | 0.802810 | 4.700429e-49 | -8.615850e-47 |
| Msa1130290 | Msa1390280 | 0.815228 | 1.029600e-51 | -8.615850e-47 |
| Msa0526670 | Msa1130290 | 0.812607 | 3.894452e-51 | -8.615850e-47 |
| Msa0580390 | Msa1130290 | 0.801217 | 9.990843e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130290 | MtrunA17_Chr7g0275441 | 92.857 | 336 | 3 | 2 | 27 | 341 | 1 | 336 | 0.0 | 624 |
| Msa1130290 | MtrunA17_Chr5g0448741 | 36.615 | 325 | 168 | 8 | 15 | 310 | 35 | 350 | 1.14e-56 | 187 |
| Msa1130290 | MtrunA17_Chr1g0213541 | 26.776 | 366 | 221 | 10 | 11 | 341 | 25 | 378 | 1.57e-32 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130290 | AT5G41760.1 | 71.131 | 336 | 73 | 4 | 29 | 341 | 6 | 340 | 1.47e-170 | 478 |
| Msa1130290 | AT5G41760.2 | 71.131 | 336 | 73 | 4 | 29 | 341 | 6 | 340 | 1.47e-170 | 478 |
| Msa1130290 | AT3G59360.1 | 26.571 | 350 | 211 | 9 | 14 | 329 | 23 | 360 | 1.18e-31 | 123 |
| Msa1130290 | AT3G59360.2 | 26.571 | 350 | 211 | 9 | 14 | 329 | 23 | 360 | 1.18e-31 | 123 |
| Msa1130290 | AT2G43240.1 | 26.136 | 352 | 213 | 10 | 23 | 340 | 39 | 377 | 8.38e-30 | 118 |
| Msa1130290 | AT2G43240.2 | 24.709 | 344 | 209 | 8 | 23 | 340 | 39 | 358 | 4.92e-29 | 115 |
Find 116 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGACTCGTCTTCGTTAC+TGG | 0.105086 | 7_3:-82395752 | Msa1130290:CDS |
| TCATCTGATTTAACTGTTAA+TGG | 0.110752 | 7_3:+82392279 | None:intergenic |
| CACTTCCACTTATCAGATTA+TGG | 0.148286 | 7_3:-82395301 | Msa1130290:CDS |
| TCTATTTATGGCTGTATTAA+TGG | 0.156740 | 7_3:-82390844 | Msa1130290:three_prime_UTR |
| CCTATATTATGCTCTATTTA+TGG | 0.156884 | 7_3:-82390856 | Msa1130290:three_prime_UTR |
| CTGAGAAATGTCTACTAATT+TGG | 0.179325 | 7_3:-82390781 | Msa1130290:three_prime_UTR |
| ATAGAGGGCCAATGTTTATT+TGG | 0.184058 | 7_3:+82391008 | None:intergenic |
| TTCAGAGGTGGCTTTGAAAA+TGG | 0.184703 | 7_3:-82393240 | Msa1130290:CDS |
| ATTACTTTAATAGGCCTTCT+AGG | 0.197101 | 7_3:+82391268 | None:intergenic |
| CATTTCATTCAATTAACTAT+TGG | 0.238094 | 7_3:+82391121 | None:intergenic |
| CTACTGGTCTTCTGGTTTCA+TGG | 0.238119 | 7_3:-82393149 | Msa1130290:CDS |
| ATCAAACAAATTACTTTAAT+AGG | 0.240310 | 7_3:+82391259 | None:intergenic |
| TTCCACTCCGTTGTCATCTT+TGG | 0.244002 | 7_3:+82395405 | None:intergenic |
| GGCATATCTAAGAGCATATT+TGG | 0.244539 | 7_3:+82392300 | None:intergenic |
| TACCCCATTCAAATTAATTA+TGG | 0.255416 | 7_3:+82390900 | None:intergenic |
| TCTCAGTTTAAAGAGATAAT+AGG | 0.267329 | 7_3:+82390798 | None:intergenic |
| AGGATGTTGTCCTTGGATTT+AGG | 0.282831 | 7_3:-82391075 | Msa1130290:three_prime_UTR |
| AGTTGCATAATCGTATTTAT+AGG | 0.286946 | 7_3:+82395506 | None:intergenic |
| AAAACGTGGTTTACTCAATT+AGG | 0.291579 | 7_3:-82391095 | Msa1130290:three_prime_UTR |
| CATAAATAGAGCATAATATA+GGG | 0.297315 | 7_3:+82390857 | None:intergenic |
| TCTAGGGTCTACTGGTCTTC+TGG | 0.302371 | 7_3:-82393157 | Msa1130290:CDS |
| AGGATCCATTGGTTTGTGAT+AGG | 0.313195 | 7_3:+82395526 | None:intergenic |
| TGGTTGGTGGTATTAAATCT+AGG | 0.323958 | 7_3:-82393174 | Msa1130290:CDS |
| TTCTCACTGCAGCTATTCTT+AGG | 0.325901 | 7_3:-82392366 | Msa1130290:intron |
| TGGAATTGGTGCTGAGAAAA+TGG | 0.331852 | 7_3:+82394093 | None:intergenic |
| CCATAAATAGAGCATAATAT+AGG | 0.333193 | 7_3:+82390856 | None:intergenic |
| CCAATTCCAGGTTACATGTT+AGG | 0.344480 | 7_3:-82394079 | Msa1130290:CDS |
| CTATTCTTCATTGTATTCAT+AGG | 0.352580 | 7_3:+82390739 | None:intergenic |
| CTCAATTAGGATGTTGTCCT+TGG | 0.356099 | 7_3:-82391082 | Msa1130290:three_prime_UTR |
| CTATTTATGGCTGTATTAAT+GGG | 0.373299 | 7_3:-82390843 | Msa1130290:three_prime_UTR |
| TTCACCATAATTAATTTGAA+TGG | 0.374664 | 7_3:-82390904 | Msa1130290:three_prime_UTR |
| GTGGATGGCCATTGTGTTGT+TGG | 0.386755 | 7_3:-82394991 | Msa1130290:CDS |
| TCACCATAATTAATTTGAAT+GGG | 0.388144 | 7_3:-82390903 | Msa1130290:three_prime_UTR |
| TAGAGGGCCAATGTTTATTT+GGG | 0.388522 | 7_3:+82391009 | None:intergenic |
| AAAGTGTGGGCATCTTCATT+TGG | 0.388880 | 7_3:-82391188 | Msa1130290:three_prime_UTR |
| TTCTCTCTGCTGGTACTGAT+AGG | 0.394142 | 7_3:-82391039 | Msa1130290:three_prime_UTR |
| GACATCTGAATACTATGCTT+TGG | 0.398420 | 7_3:-82392199 | Msa1130290:intron |
| CCTAACATGTAACCTGGAAT+TGG | 0.398709 | 7_3:+82394079 | None:intergenic |
| CACCGTTCTCACCAGTTCTC+AGG | 0.400818 | 7_3:-82395657 | Msa1130290:intron |
| AGATAAATAACAGAAGGAAT+TGG | 0.402605 | 7_3:+82395366 | None:intergenic |
| ACTTCCACTTATCAGATTAT+GGG | 0.406816 | 7_3:-82395300 | Msa1130290:CDS |
| TTAGACTCGTCTTCGTTACT+GGG | 0.408634 | 7_3:-82395751 | Msa1130290:CDS |
| GGATCCATTGGTTTGTGATA+GGG | 0.409744 | 7_3:+82395527 | None:intergenic |
| TCAGAGGTGGCTTTGAAAAT+GGG | 0.417205 | 7_3:-82393239 | Msa1130290:CDS |
| AAAACAACGACAGCTTATAC+TGG | 0.425220 | 7_3:-82393997 | Msa1130290:CDS |
| GCCATTGTGTTGTTGGCTGT+TGG | 0.428148 | 7_3:-82394984 | Msa1130290:CDS |
| GTATTAAATCTAGGGTCTAC+TGG | 0.432983 | 7_3:-82393165 | Msa1130290:CDS |
| TTTCTACATTTCTACCTGGT+TGG | 0.434518 | 7_3:-82390950 | Msa1130290:three_prime_UTR |
| TTGAAAACTTCGGCGAGAAA+TGG | 0.444029 | 7_3:+82395480 | None:intergenic |
| CTGTGTCAAGTTTGTTACTT+TGG | 0.445808 | 7_3:-82395452 | Msa1130290:CDS |
| ATTGAATATGCGGTGCCACC+AGG | 0.452887 | 7_3:+82393215 | None:intergenic |
| GAAGAAGATGCAGTGGTACT+TGG | 0.460958 | 7_3:-82395693 | Msa1130290:CDS |
| ATGGATACACTGTCACTACT+TGG | 0.461690 | 7_3:-82393194 | Msa1130290:CDS |
| ATTACCCATAATCTGATAAG+TGG | 0.462033 | 7_3:+82395296 | None:intergenic |
| TGGCTGTATTAATGGGATGA+AGG | 0.464046 | 7_3:-82390836 | Msa1130290:three_prime_UTR |
| GCTTGTCTCTCAGCATTAGC+TGG | 0.466148 | 7_3:-82394046 | Msa1130290:CDS |
| ATCGTATTTATAGGATCCAT+TGG | 0.466751 | 7_3:+82395515 | None:intergenic |
| GTCAAGTTTGTTACTTTGGA+AGG | 0.476514 | 7_3:-82395448 | Msa1130290:CDS |
| AGTCTTTAACTTCTCTCTGC+TGG | 0.477378 | 7_3:-82391049 | Msa1130290:three_prime_UTR |
| TCATTCAATTAACTATTGGA+TGG | 0.479034 | 7_3:+82391125 | None:intergenic |
| TGTATTCATAGGAAGGAGAT+AGG | 0.480129 | 7_3:+82390750 | None:intergenic |
| CATTCAATTAACTATTGGAT+GGG | 0.489211 | 7_3:+82391126 | None:intergenic |
| TGTAAATTTACCTGCAGTGT+AGG | 0.495600 | 7_3:+82392792 | None:intergenic |
| TGGTGGCACCGCATATTCAA+TGG | 0.498420 | 7_3:-82393213 | Msa1130290:CDS |
| TGCTGAGAAAATGGAGTCAC+AGG | 0.499930 | 7_3:+82394102 | None:intergenic |
| TCCGTTGTCATCTTTGGCAA+TGG | 0.500763 | 7_3:+82395411 | None:intergenic |
| TCATTGAAGTTTCTGTTGAT+CGG | 0.503963 | 7_3:-82392245 | Msa1130290:CDS |
| TTAGGTTTATTCTACATCCA+TGG | 0.505122 | 7_3:-82392862 | Msa1130290:intron |
| CACTGTCACTACTTGGTTGG+TGG | 0.505835 | 7_3:-82393187 | Msa1130290:CDS |
| TATCTAAGAGCATATTTGGT+GGG | 0.511183 | 7_3:+82392304 | None:intergenic |
| GGCTGTATTAATGGGATGAA+GGG | 0.513937 | 7_3:-82390835 | Msa1130290:three_prime_UTR |
| TGTTGGAACAACCACAAGTC+AGG | 0.515719 | 7_3:-82394967 | Msa1130290:intron |
| GCGAGTGAGTGTATCGTATC+CGG | 0.516124 | 7_3:-82395729 | Msa1130290:CDS |
| AGGTAGAAATGTAGAAATGT+AGG | 0.516722 | 7_3:+82390956 | None:intergenic |
| GGTTGGTGGTATTAAATCTA+GGG | 0.522214 | 7_3:-82393173 | Msa1130290:CDS |
| TCTTCATTGTATTCATAGGA+AGG | 0.525483 | 7_3:+82390743 | None:intergenic |
| TTGACTTCTTGTGTCATAGA+GGG | 0.530553 | 7_3:+82390993 | None:intergenic |
| CTTGACTTCTTGTGTCATAG+AGG | 0.532939 | 7_3:+82390992 | None:intergenic |
| ACATGCTGATAATATTGTAA+AGG | 0.534264 | 7_3:-82393118 | Msa1130290:intron |
| CAACTTCAAACCTACACTGC+AGG | 0.538512 | 7_3:-82392802 | Msa1130290:intron |
| AAAGACTTTGCCTAAATCCA+AGG | 0.539107 | 7_3:+82391065 | None:intergenic |
| AGAGTGAGTGACCTGAGAAC+TGG | 0.541709 | 7_3:+82395646 | None:intergenic |
| GTTCAGCGGTTTCTAAAGTG+TGG | 0.549463 | 7_3:-82391202 | Msa1130290:three_prime_UTR |
| TTAGGTCAAGGGCTGTGGAG+AGG | 0.552595 | 7_3:-82394128 | Msa1130290:intron |
| TCTCTCTGCTGGTACTGATA+GGG | 0.553615 | 7_3:-82391038 | Msa1130290:three_prime_UTR |
| GTGGCTTTGAAAATGGGCCC+TGG | 0.553886 | 7_3:-82393233 | Msa1130290:CDS |
| TAAACAAGTTGGCAGCAAAA+CGG | 0.556668 | 7_3:-82395779 | None:intergenic |
| ATTGCGGATGATTTCAGAGG+TGG | 0.557405 | 7_3:-82393252 | Msa1130290:CDS |
| TTGAATATGCGGTGCCACCA+GGG | 0.559611 | 7_3:+82393216 | None:intergenic |
| CACAGCAAGCTTGAAAACTT+CGG | 0.561847 | 7_3:+82395470 | None:intergenic |
| CATTGTCAGCAGCATTGCCA+TGG | 0.568189 | 7_3:+82392845 | None:intergenic |
| GAATATCATTTCAATCTGCA+TGG | 0.570946 | 7_3:-82391224 | Msa1130290:three_prime_UTR |
| CACCATAATTAATTTGAATG+GGG | 0.571757 | 7_3:-82390902 | Msa1130290:three_prime_UTR |
| GCTTTGAAAATGGGCCCTGG+TGG | 0.578042 | 7_3:-82393230 | Msa1130290:CDS |
| CAATCTGGCAAAGCTTATTG+CGG | 0.578679 | 7_3:-82393268 | Msa1130290:CDS |
| TGAATGAGATAAATAACAGA+AGG | 0.592918 | 7_3:+82395360 | None:intergenic |
| ATCTAAGAGCATATTTGGTG+GGG | 0.594223 | 7_3:+82392305 | None:intergenic |
| TACATTTCTACATTTCTACC+TGG | 0.598019 | 7_3:-82390954 | Msa1130290:three_prime_UTR |
| CTTATTGCGGATGATTTCAG+AGG | 0.598849 | 7_3:-82393255 | Msa1130290:CDS |
| TTCAGCGGTTTCTAAAGTGT+GGG | 0.602770 | 7_3:-82391201 | Msa1130290:three_prime_UTR |
| GTTACTGCCCAAATAAACAT+TGG | 0.607519 | 7_3:-82391016 | Msa1130290:three_prime_UTR |
| AGAACTCCTAACATGTAACC+TGG | 0.612089 | 7_3:+82394073 | None:intergenic |
| ATACACTGTCACTACTTGGT+TGG | 0.612523 | 7_3:-82393190 | Msa1130290:CDS |
| GAAATGTAGGCTACAGATCG+TGG | 0.616082 | 7_3:+82390969 | None:intergenic |
| TGAATGAAATGCACAAAACG+TGG | 0.617091 | 7_3:-82391109 | Msa1130290:three_prime_UTR |
| TTTCAATCTGCATGGTTCAG+CGG | 0.618958 | 7_3:-82391216 | Msa1130290:three_prime_UTR |
| ACAACCCTATCACAAACCAA+TGG | 0.620994 | 7_3:-82395531 | Msa1130290:CDS |
| ATAAATAGAGCATAATATAG+GGG | 0.626427 | 7_3:+82390858 | None:intergenic |
| GACCTGAGAACTGGTGAGAA+CGG | 0.641704 | 7_3:+82395655 | None:intergenic |
| ATATCTAAGAGCATATTTGG+TGG | 0.644245 | 7_3:+82392303 | None:intergenic |
| TGCCAAAGATGACAACGGAG+TGG | 0.667533 | 7_3:-82395407 | Msa1130290:CDS |
| AGTTTGTACAGCAACCAACC+AGG | 0.668917 | 7_3:+82390936 | None:intergenic |
| CAGTGTATCCATTGAATATG+CGG | 0.671891 | 7_3:+82393205 | None:intergenic |
| ACCATTGCCAAAGATGACAA+CGG | 0.697822 | 7_3:-82395412 | Msa1130290:CDS |
| ATAATGTAGTACCTGACTTG+TGG | 0.699171 | 7_3:+82394956 | None:intergenic |
| TCCAACAGCCAACAACACAA+TGG | 0.706504 | 7_3:+82394983 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAATTAATTATTTATTC+TGG | - | chr7_3:82391751-82391770 | Msa1130290:intron | 10.0% |
| !! | TAAATGTATACAAATTAAAT+GGG | - | chr7_3:82393181-82393200 | Msa1130290:CDS | 10.0% |
| !!! | AATTTTATGCTTATTTACTT+GGG | + | chr7_3:82392004-82392023 | None:intergenic | 15.0% |
| !!! | ATTCTTAATTTGTTGTATTT+GGG | + | chr7_3:82392171-82392190 | None:intergenic | 15.0% |
| !!! | TATTCTTAATTTGTTGTATT+TGG | + | chr7_3:82392172-82392191 | None:intergenic | 15.0% |
| !!! | TATACAAAGTTTTTGTTTTT+TGG | - | chr7_3:82392278-82392297 | Msa1130290:CDS | 15.0% |
| !!! | ATACAAAGTTTTTGTTTTTT+GGG | - | chr7_3:82392279-82392298 | Msa1130290:CDS | 15.0% |
| !! | ATAAAAAAGCTGAAAATATA+GGG | + | chr7_3:82392950-82392969 | None:intergenic | 15.0% |
| !! | AATAAAAAAGCTGAAAATAT+AGG | + | chr7_3:82392951-82392970 | None:intergenic | 15.0% |
| !! | CTAAATGTATACAAATTAAA+TGG | - | chr7_3:82393180-82393199 | Msa1130290:CDS | 15.0% |
| !!! | TTTTAAAAAAGATTATTCAG+TGG | + | chr7_3:82393496-82393515 | None:intergenic | 15.0% |
| !!! | ACTGAATAATCTTTTTTAAA+AGG | - | chr7_3:82393495-82393514 | Msa1130290:intron | 15.0% |
| !! | ATCAAACAAATTACTTTAAT+AGG | + | chr7_3:82395244-82395263 | None:intergenic | 15.0% |
| !! | AAAGGTTATACTAGTATAAA+TGG | - | chr7_3:82391914-82391933 | Msa1130290:intron | 20.0% |
| !!! | ATTTTATGCTTATTTACTTG+GGG | + | chr7_3:82392003-82392022 | None:intergenic | 20.0% |
| !!! | CAATTTTATGCTTATTTACT+TGG | + | chr7_3:82392005-82392024 | None:intergenic | 20.0% |
| !!! | TCTATAATGGTTATTGTTTT+AGG | - | chr7_3:82392354-82392373 | Msa1130290:CDS | 20.0% |
| !! | AGTTTAAAAGATTATCACAA+TGG | + | chr7_3:82392613-82392632 | None:intergenic | 20.0% |
| !! | TAAAAAAGCTGAAAATATAG+GGG | + | chr7_3:82392949-82392968 | None:intergenic | 20.0% |
| !! | TACAACTTTCAACAAAAAAA+CGG | + | chr7_3:82393000-82393019 | None:intergenic | 20.0% |
| !! | GTAGTATGGAAAAATAAAAA+TGG | + | chr7_3:82393437-82393456 | None:intergenic | 20.0% |
| !! | TTCATCAAATATATGTAGTA+TGG | + | chr7_3:82393451-82393470 | None:intergenic | 20.0% |
| !! | GGAAAAGAAAATACATAAAT+GGG | + | chr7_3:82393583-82393602 | None:intergenic | 20.0% |
| !! | AGGAAAAGAAAATACATAAA+TGG | + | chr7_3:82393584-82393603 | None:intergenic | 20.0% |
| !!! | ATGTAGTATCATACAAATTT+TGG | + | chr7_3:82393746-82393765 | None:intergenic | 20.0% |
| !!! | TTTTATATGATTTAAAAGGG+TGG | + | chr7_3:82394626-82394645 | None:intergenic | 20.0% |
| !! | CATTTCATTCAATTAACTAT+TGG | + | chr7_3:82395382-82395401 | None:intergenic | 20.0% |
| !!! | TTCACCATAATTAATTTGAA+TGG | - | chr7_3:82395596-82395615 | Msa1130290:intron | 20.0% |
| !!! | TCACCATAATTAATTTGAAT+GGG | - | chr7_3:82395597-82395616 | Msa1130290:intron | 20.0% |
| !! | ATAAATAGAGCATAATATAG+GGG | + | chr7_3:82395645-82395664 | None:intergenic | 20.0% |
| !! | CATAAATAGAGCATAATATA+GGG | + | chr7_3:82395646-82395665 | None:intergenic | 20.0% |
| ! | GTAATTGAGCAATGAAATTA+GGG | + | chr7_3:82390888-82390907 | None:intergenic | 25.0% |
| ! | AGTAATTGAGCAATGAAATT+AGG | + | chr7_3:82390889-82390908 | None:intergenic | 25.0% |
| ! | TTCACATTACATTACATTAC+AGG | - | chr7_3:82390938-82390957 | Msa1130290:three_prime_UTR | 25.0% |
| ! | TCACATTACATTACATTACA+GGG | - | chr7_3:82390939-82390958 | Msa1130290:three_prime_UTR | 25.0% |
| ! | AGTTGCATAATCGTATTTAT+AGG | + | chr7_3:82390997-82391016 | None:intergenic | 25.0% |
| ! | AGATAAATAACAGAAGGAAT+TGG | + | chr7_3:82391137-82391156 | None:intergenic | 25.0% |
| ! | TGAATGAGATAAATAACAGA+AGG | + | chr7_3:82391143-82391162 | None:intergenic | 25.0% |
| !!! | TGTTATTTCTAGGCTTTTTT+TGG | - | chr7_3:82391464-82391483 | Msa1130290:intron | 25.0% |
| !!! | GTTATTTCTAGGCTTTTTTT+GGG | - | chr7_3:82391465-82391484 | Msa1130290:intron | 25.0% |
| !!! | TTATTTCTAGGCTTTTTTTG+GGG | - | chr7_3:82391466-82391485 | Msa1130290:intron | 25.0% |
| !! | GAATTTGAGAAGTACATTAT+TGG | - | chr7_3:82391819-82391838 | Msa1130290:intron | 25.0% |
| !! | AGAAGTACATTATTGGATTA+AGG | - | chr7_3:82391826-82391845 | Msa1130290:intron | 25.0% |
| ! | TTTCTCTATTAACCAAATGA+AGG | + | chr7_3:82391952-82391971 | None:intergenic | 25.0% |
| !! | TTTTATGCTTATTTACTTGG+GGG | + | chr7_3:82392002-82392021 | None:intergenic | 25.0% |
| ! | ACTTTGTATAAAACAGCAAA+GGG | + | chr7_3:82392268-82392287 | None:intergenic | 25.0% |
| ! | AACTTTGTATAAAACAGCAA+AGG | + | chr7_3:82392269-82392288 | None:intergenic | 25.0% |
| ! | TATTGAGATGGAATCTATAA+TGG | - | chr7_3:82392341-82392360 | Msa1130290:CDS | 25.0% |
| ! | ATAGTTGAAAAGGGAAAAAA+TGG | + | chr7_3:82392661-82392680 | None:intergenic | 25.0% |
| ! | TATTCTACTGTTGAATTACA+TGG | - | chr7_3:82392751-82392770 | Msa1130290:intron | 25.0% |
| !!! | TTTTAGTCGTCAATTTTTTC+TGG | - | chr7_3:82392794-82392813 | Msa1130290:intron | 25.0% |
| ! | AAAAAAGCTGAAAATATAGG+GGG | + | chr7_3:82392948-82392967 | None:intergenic | 25.0% |
| ! | ACATTGCTGTAAAACAAAAT+GGG | - | chr7_3:82393055-82393074 | Msa1130290:intron | 25.0% |
| ! | AGAGTATACAAATTTGACTA+TGG | - | chr7_3:82393132-82393151 | Msa1130290:CDS | 25.0% |
| ! | ACATGCTGATAATATTGTAA+AGG | - | chr7_3:82393382-82393401 | Msa1130290:intron | 25.0% |
| ! | AATTAACTTTAATGTGACAC+TGG | - | chr7_3:82393523-82393542 | Msa1130290:intron | 25.0% |
| ! | CATATGATTATATCATCATG+TGG | + | chr7_3:82393847-82393866 | None:intergenic | 25.0% |
| !!! | ATCATATGATGTTGTTTTAC+AGG | - | chr7_3:82393859-82393878 | Msa1130290:intron | 25.0% |
| !!! | AACGAATGTTGTTACTTTTT+TGG | - | chr7_3:82394013-82394032 | Msa1130290:CDS | 25.0% |
| ! | TCATCTGATTTAACTGTTAA+TGG | + | chr7_3:82394224-82394243 | None:intergenic | 25.0% |
| ! | TTGATTAAACAAGATTGTTG+CGG | - | chr7_3:82394466-82394485 | Msa1130290:intron | 25.0% |
| ! | CCAATATATTTAAACTGAAC+TGG | + | chr7_3:82394849-82394868 | None:intergenic | 25.0% |
| ! | CCAGTTCAGTTTAAATATAT+TGG | - | chr7_3:82394846-82394865 | Msa1130290:intron | 25.0% |
| ! | AGCAGGAAATAACATATAAT+CGG | + | chr7_3:82394898-82394917 | None:intergenic | 25.0% |
| ! | AGTCTTAAAAACATGTATAG+TGG | - | chr7_3:82394932-82394951 | Msa1130290:intron | 25.0% |
| ! | TTGCTTACAAGTAAAATAAC+AGG | + | chr7_3:82395133-82395152 | None:intergenic | 25.0% |
| ! | CATTCAATTAACTATTGGAT+GGG | + | chr7_3:82395377-82395396 | None:intergenic | 25.0% |
| ! | TCATTCAATTAACTATTGGA+TGG | + | chr7_3:82395378-82395397 | None:intergenic | 25.0% |
| !! | CACCATAATTAATTTGAATG+GGG | - | chr7_3:82395598-82395617 | Msa1130290:intron | 25.0% |
| ! | TACCCCATTCAAATTAATTA+TGG | + | chr7_3:82395603-82395622 | None:intergenic | 25.0% |
| ! | CCATAAATAGAGCATAATAT+AGG | + | chr7_3:82395647-82395666 | None:intergenic | 25.0% |
| ! | CCTATATTATGCTCTATTTA+TGG | - | chr7_3:82395644-82395663 | Msa1130290:intron | 25.0% |
| ! | TCTATTTATGGCTGTATTAA+TGG | - | chr7_3:82395656-82395675 | Msa1130290:intron | 25.0% |
| ! | CTATTTATGGCTGTATTAAT+GGG | - | chr7_3:82395657-82395676 | Msa1130290:intron | 25.0% |
| ! | TCTCAGTTTAAAGAGATAAT+AGG | + | chr7_3:82395705-82395724 | None:intergenic | 25.0% |
| ! | CTATTCTTCATTGTATTCAT+AGG | + | chr7_3:82395764-82395783 | None:intergenic | 25.0% |
| ATCGTATTTATAGGATCCAT+TGG | + | chr7_3:82390988-82391007 | None:intergenic | 30.0% | |
| ACTTCCACTTATCAGATTAT+GGG | - | chr7_3:82391200-82391219 | Msa1130290:three_prime_UTR | 30.0% | |
| ATTACCCATAATCTGATAAG+TGG | + | chr7_3:82391207-82391226 | None:intergenic | 30.0% | |
| AATTTGAAGATTGTTACCAC+CGG | - | chr7_3:82391224-82391243 | Msa1130290:three_prime_UTR | 30.0% | |
| AATGCACCTGAATAATATTC+CGG | + | chr7_3:82391246-82391265 | None:intergenic | 30.0% | |
| CAATAGTCTTTGCAAAATCA+CGG | + | chr7_3:82391342-82391361 | None:intergenic | 30.0% | |
| ! | TGATTTTGCAAAGACTATTG+TGG | - | chr7_3:82391342-82391361 | Msa1130290:intron | 30.0% |
| !! | GATGTTAGACTGTTATTTCT+AGG | - | chr7_3:82391454-82391473 | Msa1130290:intron | 30.0% |
| GTTGTACGAAAATGATACTA+TGG | + | chr7_3:82391606-82391625 | None:intergenic | 30.0% | |
| CGTACAACATAAATGATTTC+TGG | - | chr7_3:82391618-82391637 | Msa1130290:intron | 30.0% | |
| ! | CAACATAAATGATTTCTGGA+AGG | - | chr7_3:82391622-82391641 | Msa1130290:intron | 30.0% |
| TACATAGTTTCAGTTATAGG+AGG | + | chr7_3:82391684-82391703 | None:intergenic | 30.0% | |
| GCATACATAGTTTCAGTTAT+AGG | + | chr7_3:82391687-82391706 | None:intergenic | 30.0% | |
| TAATAGAGAAAGAACCTTTC+AGG | - | chr7_3:82391961-82391980 | Msa1130290:intron | 30.0% | |
| AATAGAGAAAGAACCTTTCA+GGG | - | chr7_3:82391962-82391981 | Msa1130290:intron | 30.0% | |
| TTTATGCTTATTTACTTGGG+GGG | + | chr7_3:82392001-82392020 | None:intergenic | 30.0% | |
| AACTTGCATGTTAAGTTACA+TGG | - | chr7_3:82392136-82392155 | Msa1130290:intron | 30.0% | |
| ACTTGCATGTTAAGTTACAT+GGG | - | chr7_3:82392137-82392156 | Msa1130290:intron | 30.0% | |
| TTAAGAATAGATGCCCTAAA+TGG | - | chr7_3:82392183-82392202 | Msa1130290:intron | 30.0% | |
| !!! | TGTTTTTTGGGTCAGTATAT+TGG | - | chr7_3:82392291-82392310 | Msa1130290:CDS | 30.0% |
| !!! | GTTTTTTGGGTCAGTATATT+GGG | - | chr7_3:82392292-82392311 | Msa1130290:CDS | 30.0% |
| CAATAACATCTTGAACCATA+GGG | + | chr7_3:82392326-82392345 | None:intergenic | 30.0% | |
| TCAATAACATCTTGAACCAT+AGG | + | chr7_3:82392327-82392346 | None:intergenic | 30.0% | |
| !!! | ATGGTTATTGTTTTAGGTCA+AGG | - | chr7_3:82392360-82392379 | Msa1130290:intron | 30.0% |
| !!! | TGGTTATTGTTTTAGGTCAA+GGG | - | chr7_3:82392361-82392380 | Msa1130290:intron | 30.0% |
| ! | GTTCACTTGATAGTTGAAAA+GGG | + | chr7_3:82392670-82392689 | None:intergenic | 30.0% |
| ! | TGTTCACTTGATAGTTGAAA+AGG | + | chr7_3:82392671-82392690 | None:intergenic | 30.0% |
| TTTCAACTATCAAGTGAACA+TGG | - | chr7_3:82392671-82392690 | Msa1130290:intron | 30.0% | |
| !!! | CTCTATTTTCATGTTGACTT+AGG | - | chr7_3:82392719-82392738 | Msa1130290:intron | 30.0% |
| AGTTGAATTTCCACTATTGT+TGG | - | chr7_3:82392887-82392906 | Msa1130290:intron | 30.0% | |
| TCATGTTTATGTTATGTCAC+TGG | + | chr7_3:82392918-82392937 | None:intergenic | 30.0% | |
| AAAAAGCTGAAAATATAGGG+GGG | + | chr7_3:82392947-82392966 | None:intergenic | 30.0% | |
| ! | AGCAATGTGAATTTGGTTTA+CGG | + | chr7_3:82393043-82393062 | None:intergenic | 30.0% |
| ! | GTTTTACAGCAATGTGAATT+TGG | + | chr7_3:82393050-82393069 | None:intergenic | 30.0% |
| CACATTGCTGTAAAACAAAA+TGG | - | chr7_3:82393054-82393073 | Msa1130290:intron | 30.0% | |
| ! | TTAAATGGGTTTCTTTCTAC+AGG | - | chr7_3:82393195-82393214 | Msa1130290:CDS | 30.0% |
| !! | GTTTGGTTCAATTTTCAATC+TGG | - | chr7_3:82393217-82393236 | Msa1130290:CDS | 30.0% |
| TTAGGTTTATTCTACATCCA+TGG | - | chr7_3:82393638-82393657 | Msa1130290:intron | 30.0% | |
| !!! | TACAAATTTTGGTCTTGCTT+GGG | + | chr7_3:82393735-82393754 | None:intergenic | 30.0% |
| !!! | ATACAAATTTTGGTCTTGCT+TGG | + | chr7_3:82393736-82393755 | None:intergenic | 30.0% |
| AATGATTTGACCTCAATCTT+AGG | + | chr7_3:82393795-82393814 | None:intergenic | 30.0% | |
| ! | TATCTAAGAGCATATTTGGT+GGG | + | chr7_3:82394199-82394218 | None:intergenic | 30.0% |
| ! | ATATCTAAGAGCATATTTGG+TGG | + | chr7_3:82394200-82394219 | None:intergenic | 30.0% |
| TCATTGAAGTTTCTGTTGAT+CGG | - | chr7_3:82394255-82394274 | Msa1130290:intron | 30.0% | |
| TAGAAATGTCAGATGCTATA+TGG | + | chr7_3:82394399-82394418 | None:intergenic | 30.0% | |
| ATATCGTACCATTAAATCAG+AGG | + | chr7_3:82394681-82394700 | None:intergenic | 30.0% | |
| CTTGCATGCATTATTCTTTA+TGG | - | chr7_3:82394767-82394786 | Msa1130290:intron | 30.0% | |
| !!! | AGATCTTGCTGTTTTTATTC+TGG | - | chr7_3:82394806-82394825 | Msa1130290:intron | 30.0% |
| !!! | GATCTTGCTGTTTTTATTCT+GGG | - | chr7_3:82394807-82394826 | Msa1130290:intron | 30.0% |
| !!! | ACATGTTTTTAAGACTGTGA+TGG | + | chr7_3:82394928-82394947 | None:intergenic | 30.0% |
| !! | AAATCAATTTTAACGCAGAC+AGG | + | chr7_3:82395003-82395022 | None:intergenic | 30.0% |
| ATGAGAACCAAAACTATCAA+TGG | + | chr7_3:82395157-82395176 | None:intergenic | 30.0% | |
| GAATATCATTTCAATCTGCA+TGG | - | chr7_3:82395276-82395295 | Msa1130290:intron | 30.0% | |
| AAAACGTGGTTTACTCAATT+AGG | - | chr7_3:82395405-82395424 | Msa1130290:CDS | 30.0% | |
| AGGTAGAAATGTAGAAATGT+AGG | + | chr7_3:82395547-82395566 | None:intergenic | 30.0% | |
| TACATTTCTACATTTCTACC+TGG | - | chr7_3:82395546-82395565 | Msa1130290:intron | 30.0% | |
| CTGAGAAATGTCTACTAATT+TGG | - | chr7_3:82395719-82395738 | Msa1130290:CDS | 30.0% | |
| TCTTCATTGTATTCATAGGA+AGG | + | chr7_3:82395760-82395779 | None:intergenic | 30.0% | |
| TTCTTCTTCTTCTTCAGATC+CGG | + | chr7_3:82390793-82390812 | None:intergenic | 35.0% | |
| !! | CTGTGTCAAGTTTGTTACTT+TGG | - | chr7_3:82391048-82391067 | Msa1130290:three_prime_UTR | 35.0% |
| !! | GTCAAGTTTGTTACTTTGGA+AGG | - | chr7_3:82391052-82391071 | Msa1130290:three_prime_UTR | 35.0% |
| CACTTCCACTTATCAGATTA+TGG | - | chr7_3:82391199-82391218 | Msa1130290:three_prime_UTR | 35.0% | |
| TTACCACCGGAATATTATTC+AGG | - | chr7_3:82391237-82391256 | Msa1130290:three_prime_UTR | 35.0% | |
| TTCATGATCAAGTGCATGTT+TGG | - | chr7_3:82391281-82391300 | Msa1130290:intron | 35.0% | |
| CAAGTGCATGTTTGGTATTA+TGG | - | chr7_3:82391289-82391308 | Msa1130290:intron | 35.0% | |
| TGCATGTTTGGTATTATGGT+GGG | - | chr7_3:82391293-82391312 | Msa1130290:intron | 35.0% | |
| ! | TTTTGCAAAGACTATTGTGG+CGG | - | chr7_3:82391345-82391364 | Msa1130290:intron | 35.0% |
| ! | ATAATGTAGTACCTGACTTG+TGG | + | chr7_3:82391547-82391566 | None:intergenic | 35.0% |
| AGTCAGGTACTACATTATGT+CGG | - | chr7_3:82391549-82391568 | Msa1130290:intron | 35.0% | |
| ! | GTAAACTGTAGAAGAAGTAC+AGG | + | chr7_3:82391655-82391674 | None:intergenic | 35.0% |
| TAACTGAAACTATGTATGCG+AGG | - | chr7_3:82391688-82391707 | Msa1130290:intron | 35.0% | |
| ATAGAGAAAGAACCTTTCAG+GGG | - | chr7_3:82391963-82391982 | Msa1130290:intron | 35.0% | |
| ! | TTGTTGCATTTGAGACACTT+TGG | + | chr7_3:82392038-82392057 | None:intergenic | 35.0% |
| AATTGTGATGTGGCCATTTA+GGG | + | chr7_3:82392199-82392218 | None:intergenic | 35.0% | |
| TAATTGTGATGTGGCCATTT+AGG | + | chr7_3:82392200-82392219 | None:intergenic | 35.0% | |
| GAATTCGTGTAATTGTGATG+TGG | + | chr7_3:82392209-82392228 | None:intergenic | 35.0% | |
| TATTGGGAAAATCATCCCTA+TGG | - | chr7_3:82392308-82392327 | Msa1130290:CDS | 35.0% | |
| GGTTCAAGATGTTATTGAGA+TGG | - | chr7_3:82392329-82392348 | Msa1130290:CDS | 35.0% | |
| AAAACAACGACAGCTTATAC+TGG | - | chr7_3:82392503-82392522 | Msa1130290:intron | 35.0% | |
| !!! | TTCTGGTTTTTGTGTGTGAT+AGG | - | chr7_3:82392811-82392830 | Msa1130290:CDS | 35.0% |
| !!! | TCTGGTTTTTGTGTGTGATA+GGG | - | chr7_3:82392812-82392831 | Msa1130290:CDS | 35.0% |
| ACTGGATATTCCAACAATAG+TGG | + | chr7_3:82392900-82392919 | None:intergenic | 35.0% | |
| ! | CAATGTGAATTTGGTTTACG+GGG | + | chr7_3:82393041-82393060 | None:intergenic | 35.0% |
| ! | GCAATGTGAATTTGGTTTAC+GGG | + | chr7_3:82393042-82393061 | None:intergenic | 35.0% |
| CAGTGTATCCATTGAATATG+CGG | + | chr7_3:82393298-82393317 | None:intergenic | 35.0% | |
| !! | TGGTTGGTGGTATTAAATCT+AGG | - | chr7_3:82393326-82393345 | Msa1130290:intron | 35.0% |
| !! | GGTTGGTGGTATTAAATCTA+GGG | - | chr7_3:82393327-82393346 | Msa1130290:intron | 35.0% |
| ! | GTATTAAATCTAGGGTCTAC+TGG | - | chr7_3:82393335-82393354 | Msa1130290:intron | 35.0% |
| ACTAACAGTTAGGGAGAAAA+AGG | + | chr7_3:82393604-82393623 | None:intergenic | 35.0% | |
| TAGTTGTGTCTGCTTTCTTT+AGG | - | chr7_3:82393620-82393639 | Msa1130290:intron | 35.0% | |
| TGTAAATTTACCTGCAGTGT+AGG | + | chr7_3:82393711-82393730 | None:intergenic | 35.0% | |
| ACCTCAATCTTAGGACATAA+GGG | + | chr7_3:82393786-82393805 | None:intergenic | 35.0% | |
| TAAACTACAGCAAACAGCTT+TGG | + | chr7_3:82393889-82393908 | None:intergenic | 35.0% | |
| ! | ATCTAAGAGCATATTTGGTG+GGG | + | chr7_3:82394198-82394217 | None:intergenic | 35.0% |
| ! | GGCATATCTAAGAGCATATT+TGG | + | chr7_3:82394203-82394222 | None:intergenic | 35.0% |
| GACATCTGAATACTATGCTT+TGG | - | chr7_3:82394301-82394320 | Msa1130290:intron | 35.0% | |
| ! | CTACTACATGGGTTTTTGTA+GGG | + | chr7_3:82394578-82394597 | None:intergenic | 35.0% |
| !! | AAGCAAGCCATTGATAGTTT+TGG | - | chr7_3:82395147-82395166 | Msa1130290:intron | 35.0% |
| ! | GGTTCTCATTATTTTCCTGT+TGG | - | chr7_3:82395168-82395187 | Msa1130290:intron | 35.0% |
| !!! | TATTTTCCTGTTGGCTCTAA+AGG | - | chr7_3:82395177-82395196 | Msa1130290:intron | 35.0% |
| !! | AAAATACCTTTAGAGCCAAC+AGG | + | chr7_3:82395186-82395205 | None:intergenic | 35.0% |
| AGGAAAAACCTGGGAAAAAA+GGG | + | chr7_3:82395215-82395234 | None:intergenic | 35.0% | |
| TAGGAAAAACCTGGGAAAAA+AGG | + | chr7_3:82395216-82395235 | None:intergenic | 35.0% | |
| TGAATGAAATGCACAAAACG+TGG | - | chr7_3:82395391-82395410 | Msa1130290:CDS | 35.0% | |
| AAAGACTTTGCCTAAATCCA+AGG | + | chr7_3:82395438-82395457 | None:intergenic | 35.0% | |
| GTTACTGCCCAAATAAACAT+TGG | - | chr7_3:82395484-82395503 | Msa1130290:CDS | 35.0% | |
| TAGAGGGCCAATGTTTATTT+GGG | + | chr7_3:82395494-82395513 | None:intergenic | 35.0% | |
| ATAGAGGGCCAATGTTTATT+TGG | + | chr7_3:82395495-82395514 | None:intergenic | 35.0% | |
| TTGACTTCTTGTGTCATAGA+GGG | + | chr7_3:82395510-82395529 | None:intergenic | 35.0% | |
| TTTCTACATTTCTACCTGGT+TGG | - | chr7_3:82395550-82395569 | Msa1130290:intron | 35.0% | |
| TGTATTCATAGGAAGGAGAT+AGG | + | chr7_3:82395753-82395772 | None:intergenic | 35.0% | |
| TTTAGACTCGTCTTCGTTAC+TGG | - | chr7_3:82390748-82390767 | Msa1130290:three_prime_UTR | 40.0% | |
| TTAGACTCGTCTTCGTTACT+GGG | - | chr7_3:82390749-82390768 | Msa1130290:three_prime_UTR | 40.0% | |
| AGAAGAAGAAGAAGATGCAG+TGG | - | chr7_3:82390800-82390819 | Msa1130290:three_prime_UTR | 40.0% | |
| ACAACCCTATCACAAACCAA+TGG | - | chr7_3:82390969-82390988 | Msa1130290:three_prime_UTR | 40.0% | |
| !! | GGATCCATTGGTTTGTGATA+GGG | + | chr7_3:82390976-82390995 | None:intergenic | 40.0% |
| !! | AGGATCCATTGGTTTGTGAT+AGG | + | chr7_3:82390977-82390996 | None:intergenic | 40.0% |
| TTGAAAACTTCGGCGAGAAA+TGG | + | chr7_3:82391023-82391042 | None:intergenic | 40.0% | |
| CACAGCAAGCTTGAAAACTT+CGG | + | chr7_3:82391033-82391052 | None:intergenic | 40.0% | |
| ACCATTGCCAAAGATGACAA+CGG | - | chr7_3:82391088-82391107 | Msa1130290:three_prime_UTR | 40.0% | |
| GTGCATGTTTGGTATTATGG+TGG | - | chr7_3:82391292-82391311 | Msa1130290:intron | 40.0% | |
| TAGTGAGTTTGCCAGAATCA+CGG | + | chr7_3:82391375-82391394 | None:intergenic | 40.0% | |
| !!! | TTTCTAGGCTTTTTTTGGGG+AGG | - | chr7_3:82391469-82391488 | Msa1130290:intron | 40.0% |
| ! | CTGTAGAAGAAGTACAGGAA+AGG | + | chr7_3:82391650-82391669 | None:intergenic | 40.0% |
| GAAGGCAGGAAGCAAATATT+CGG | + | chr7_3:82391871-82391890 | None:intergenic | 40.0% | |
| ! | AGAACACTGTGGTCTTAGAA+AGG | - | chr7_3:82391896-82391915 | Msa1130290:intron | 40.0% |
| CACGTGTATGAACCTTCATT+TGG | - | chr7_3:82391937-82391956 | Msa1130290:intron | 40.0% | |
| ATTTCTTATCCTCCCCTGAA+AGG | + | chr7_3:82391978-82391997 | None:intergenic | 40.0% | |
| ! | CAGCTCTCATGGTTATTTCA+AGG | + | chr7_3:82392098-82392117 | None:intergenic | 40.0% |
| CTTGAAATAACCATGAGAGC+TGG | - | chr7_3:82392096-82392115 | Msa1130290:intron | 40.0% | |
| !! | TGGAATTGGTGCTGAGAAAA+TGG | + | chr7_3:82392410-82392429 | None:intergenic | 40.0% |
| ! | ATTTTCTCAGCACCAATTCC+AGG | - | chr7_3:82392409-82392428 | Msa1130290:intron | 40.0% |
| CCTAACATGTAACCTGGAAT+TGG | + | chr7_3:82392424-82392443 | None:intergenic | 40.0% | |
| CCAATTCCAGGTTACATGTT+AGG | - | chr7_3:82392421-82392440 | Msa1130290:intron | 40.0% | |
| AGAACTCCTAACATGTAACC+TGG | + | chr7_3:82392430-82392449 | None:intergenic | 40.0% | |
| CAAATCTCTAGATAGCCATG+TGG | - | chr7_3:82392578-82392597 | Msa1130290:intron | 40.0% | |
| !! | CTGGTTTTTGTGTGTGATAG+GGG | - | chr7_3:82392813-82392832 | Msa1130290:CDS | 40.0% |
| ! | TGACAAGCGTTGCTTAATCA+TGG | - | chr7_3:82393084-82393103 | Msa1130290:intron | 40.0% |
| TGGGTTTCTTTCTACAGGTT+TGG | - | chr7_3:82393200-82393219 | Msa1130290:CDS | 40.0% | |
| CAATCTGGCAAAGCTTATTG+CGG | - | chr7_3:82393232-82393251 | Msa1130290:CDS | 40.0% | |
| CTTATTGCGGATGATTTCAG+AGG | - | chr7_3:82393245-82393264 | Msa1130290:CDS | 40.0% | |
| !! | TTCAGAGGTGGCTTTGAAAA+TGG | - | chr7_3:82393260-82393279 | Msa1130290:CDS | 40.0% |
| !! | TCAGAGGTGGCTTTGAAAAT+GGG | - | chr7_3:82393261-82393280 | Msa1130290:CDS | 40.0% |
| ATGGATACACTGTCACTACT+TGG | - | chr7_3:82393306-82393325 | Msa1130290:intron | 40.0% | |
| ATACACTGTCACTACTTGGT+TGG | - | chr7_3:82393310-82393329 | Msa1130290:intron | 40.0% | |
| AAGCGCCACATCATAGTATA+AGG | - | chr7_3:82393557-82393576 | Msa1130290:intron | 40.0% | |
| ! | ATGGGCCTTATACTATGATG+TGG | + | chr7_3:82393565-82393584 | None:intergenic | 40.0% |
| GCAGACACAACTAACAGTTA+GGG | + | chr7_3:82393613-82393632 | None:intergenic | 40.0% | |
| AGCAGACACAACTAACAGTT+AGG | + | chr7_3:82393614-82393633 | None:intergenic | 40.0% | |
| TCAATCTTAGGACATAAGGG+GGG | + | chr7_3:82393783-82393802 | None:intergenic | 40.0% | |
| CTCAATCTTAGGACATAAGG+GGG | + | chr7_3:82393784-82393803 | None:intergenic | 40.0% | |
| CCTCAATCTTAGGACATAAG+GGG | + | chr7_3:82393785-82393804 | None:intergenic | 40.0% | |
| GACCTCAATCTTAGGACATA+AGG | + | chr7_3:82393787-82393806 | None:intergenic | 40.0% | |
| TCATTCTACTGCACGTAGTT+TGG | - | chr7_3:82393810-82393829 | Msa1130290:intron | 40.0% | |
| TTCTCACTGCAGCTATTCTT+AGG | - | chr7_3:82394134-82394153 | Msa1130290:intron | 40.0% | |
| TAAACAAGATTGTTGCGGTG+TGG | - | chr7_3:82394471-82394490 | Msa1130290:intron | 40.0% | |
| ! | CCTACTACATGGGTTTTTGT+AGG | + | chr7_3:82394579-82394598 | None:intergenic | 40.0% |
| CCTACAAAAACCCATGTAGT+AGG | - | chr7_3:82394576-82394595 | Msa1130290:intron | 40.0% | |
| CCATTAAATCAGAGGACACA+GGG | + | chr7_3:82394673-82394692 | None:intergenic | 40.0% | |
| ACCATTAAATCAGAGGACAC+AGG | + | chr7_3:82394674-82394693 | None:intergenic | 40.0% | |
| TGAGTACGAGAGAAAGAGAA+AGG | - | chr7_3:82394722-82394741 | Msa1130290:intron | 40.0% | |
| GAGTACGAGAGAAAGAGAAA+GGG | - | chr7_3:82394723-82394742 | Msa1130290:intron | 40.0% | |
| AGTACGAGAGAAAGAGAAAG+GGG | - | chr7_3:82394724-82394743 | Msa1130290:intron | 40.0% | |
| ! | ATATAATCGGCTCTCAAAGC+TGG | + | chr7_3:82394885-82394904 | None:intergenic | 40.0% |
| ACTGTGATGGTAGAATTAGC+AGG | + | chr7_3:82394915-82394934 | None:intergenic | 40.0% | |
| !!! | TTTCAACTCCCTTTTTTCCC+AGG | - | chr7_3:82395204-82395223 | Msa1130290:intron | 40.0% |
| TTTCAATCTGCATGGTTCAG+CGG | - | chr7_3:82395284-82395303 | Msa1130290:intron | 40.0% | |
| !! | TTCAGCGGTTTCTAAAGTGT+GGG | - | chr7_3:82395299-82395318 | Msa1130290:CDS | 40.0% |
| AAAGTGTGGGCATCTTCATT+TGG | - | chr7_3:82395312-82395331 | Msa1130290:CDS | 40.0% | |
| CTCAATTAGGATGTTGTCCT+TGG | - | chr7_3:82395418-82395437 | Msa1130290:CDS | 40.0% | |
| AGGATGTTGTCCTTGGATTT+AGG | - | chr7_3:82395425-82395444 | Msa1130290:CDS | 40.0% | |
| ! | AGTCTTTAACTTCTCTCTGC+TGG | - | chr7_3:82395451-82395470 | Msa1130290:CDS | 40.0% |
| CTTGACTTCTTGTGTCATAG+AGG | + | chr7_3:82395511-82395530 | None:intergenic | 40.0% | |
| TGGCTGTATTAATGGGATGA+AGG | - | chr7_3:82395664-82395683 | Msa1130290:CDS | 40.0% | |
| GGCTGTATTAATGGGATGAA+GGG | - | chr7_3:82395665-82395684 | Msa1130290:CDS | 40.0% | |
| GAAGAAGATGCAGTGGTACT+TGG | - | chr7_3:82390807-82390826 | Msa1130290:three_prime_UTR | 45.0% | |
| TCCGTTGTCATCTTTGGCAA+TGG | + | chr7_3:82391092-82391111 | None:intergenic | 45.0% | |
| TTCCACTCCGTTGTCATCTT+TGG | + | chr7_3:82391098-82391117 | None:intergenic | 45.0% | |
| GCACCTGAATAATATTCCGG+TGG | + | chr7_3:82391243-82391262 | None:intergenic | 45.0% | |
| !! | TGGTATTATGGTGGGTTTGC+AGG | - | chr7_3:82391301-82391320 | Msa1130290:intron | 45.0% |
| GCTTTCAAACTTGCAGTGGA+TGG | - | chr7_3:82391494-82391513 | Msa1130290:intron | 45.0% | |
| TCCAACAGCCAACAACACAA+TGG | + | chr7_3:82391520-82391539 | None:intergenic | 45.0% | |
| TGTTGGAACAACCACAAGTC+AGG | - | chr7_3:82391533-82391552 | Msa1130290:intron | 45.0% | |
| TAAGACCACAGTGTTCTCAG+AGG | + | chr7_3:82391893-82391912 | None:intergenic | 45.0% | |
| GCAAGTTCATTGCATCTCTC+AGG | + | chr7_3:82392123-82392142 | None:intergenic | 45.0% | |
| !!! | TTGTTTTAGGTCAAGGGCTG+TGG | - | chr7_3:82392367-82392386 | Msa1130290:intron | 45.0% |
| TGCTGAGAAAATGGAGTCAC+AGG | + | chr7_3:82392401-82392420 | None:intergenic | 45.0% | |
| CAATGGCAAATGTGTCCACA+TGG | + | chr7_3:82392596-82392615 | None:intergenic | 45.0% | |
| ATTGCGGATGATTTCAGAGG+TGG | - | chr7_3:82393248-82393267 | Msa1130290:CDS | 45.0% | |
| !! | CTACTGGTCTTCTGGTTTCA+TGG | - | chr7_3:82393351-82393370 | Msa1130290:intron | 45.0% |
| CAACTTCAAACCTACACTGC+AGG | - | chr7_3:82393698-82393717 | Msa1130290:intron | 45.0% | |
| TAGGACATAAGGGGGGAATA+TGG | + | chr7_3:82393776-82393795 | None:intergenic | 45.0% | |
| CCCCTTATGTCCTAAGATTG+AGG | - | chr7_3:82393782-82393801 | Msa1130290:intron | 45.0% | |
| CCTGTCAGCAATGACATGAA+AGG | + | chr7_3:82394083-82394102 | None:intergenic | 45.0% | |
| CCTTTCATGTCATTGCTGAC+AGG | - | chr7_3:82394080-82394099 | Msa1130290:CDS | 45.0% | |
| CATTGCTGACAGGCTATAAC+TGG | - | chr7_3:82394090-82394109 | Msa1130290:CDS | 45.0% | |
| ! | TTTTTCTTGACACCGACCGA+CGG | - | chr7_3:82394533-82394552 | Msa1130290:intron | 45.0% |
| GATGTACATAGCACTACCGT+CGG | + | chr7_3:82394552-82394571 | None:intergenic | 45.0% | |
| AAACCCATGTAGTAGGACTG+TGG | - | chr7_3:82394583-82394602 | Msa1130290:intron | 45.0% | |
| AACCCATGTAGTAGGACTGT+GGG | - | chr7_3:82394584-82394603 | Msa1130290:intron | 45.0% | |
| CCCTGTGTCCTCTGATTTAA+TGG | - | chr7_3:82394670-82394689 | Msa1130290:intron | 45.0% | |
| GTACGAGAGAAAGAGAAAGG+GGG | - | chr7_3:82394725-82394744 | Msa1130290:intron | 45.0% | |
| AGAGAAAGAGAAAGGGGGAA+GGG | - | chr7_3:82394730-82394749 | Msa1130290:intron | 45.0% | |
| !! | GTTCAGCGGTTTCTAAAGTG+TGG | - | chr7_3:82395298-82395317 | Msa1130290:CDS | 45.0% |
| !! | TTCTCTCTGCTGGTACTGAT+AGG | - | chr7_3:82395461-82395480 | Msa1130290:CDS | 45.0% |
| !! | TCTCTCTGCTGGTACTGATA+GGG | - | chr7_3:82395462-82395481 | Msa1130290:CDS | 45.0% |
| GAAATGTAGGCTACAGATCG+TGG | + | chr7_3:82395534-82395553 | None:intergenic | 45.0% | |
| AGTTTGTACAGCAACCAACC+AGG | + | chr7_3:82395567-82395586 | None:intergenic | 45.0% | |
| !!! | TTTTTTTATTTTTCTTTTAT+TGG | - | chr7_3:82392841-82392860 | Msa1130290:CDS | 5.0% |
| !!! | ATATTTTATATGATTTAAAA+GGG | + | chr7_3:82394629-82394648 | None:intergenic | 5.0% |
| !!! | TATATTTTATATGATTTAAA+AGG | + | chr7_3:82394630-82394649 | None:intergenic | 5.0% |
| GCGAGTGAGTGTATCGTATC+CGG | - | chr7_3:82390771-82390790 | Msa1130290:three_prime_UTR | 50.0% | |
| GACCTGAGAACTGGTGAGAA+CGG | + | chr7_3:82390848-82390867 | None:intergenic | 50.0% | |
| AGAGTGAGTGACCTGAGAAC+TGG | + | chr7_3:82390857-82390876 | None:intergenic | 50.0% | |
| TGCCAAAGATGACAACGGAG+TGG | - | chr7_3:82391093-82391112 | Msa1130290:three_prime_UTR | 50.0% | |
| !! | TGGTGGGTTTGCAGGAATCA+CGG | - | chr7_3:82391309-82391328 | Msa1130290:intron | 50.0% |
| !!! | CTAGGCTTTTTTTGGGGAGG+AGG | - | chr7_3:82391472-82391491 | Msa1130290:intron | 50.0% |
| GGAGGCTTTCAAACTTGCAG+TGG | - | chr7_3:82391490-82391509 | Msa1130290:intron | 50.0% | |
| GTGGATGGCCATTGTGTTGT+TGG | - | chr7_3:82391509-82391528 | Msa1130290:intron | 50.0% | |
| ! | GCCATTGTGTTGTTGGCTGT+TGG | - | chr7_3:82391516-82391535 | Msa1130290:intron | 50.0% |
| ACCACAGTGTTCTCAGAGGA+AGG | + | chr7_3:82391889-82391908 | None:intergenic | 50.0% | |
| GAGAAAGAACCTTTCAGGGG+AGG | - | chr7_3:82391966-82391985 | Msa1130290:intron | 50.0% | |
| GCTTGTCTCTCAGCATTAGC+TGG | - | chr7_3:82392454-82392473 | Msa1130290:intron | 50.0% | |
| !! | TTGAATATGCGGTGCCACCA+GGG | + | chr7_3:82393287-82393306 | None:intergenic | 50.0% |
| !! | ATTGAATATGCGGTGCCACC+AGG | + | chr7_3:82393288-82393307 | None:intergenic | 50.0% |
| TGGTGGCACCGCATATTCAA+TGG | - | chr7_3:82393287-82393306 | Msa1130290:intron | 50.0% | |
| CACTGTCACTACTTGGTTGG+TGG | - | chr7_3:82393313-82393332 | Msa1130290:intron | 50.0% | |
| !! | TCTAGGGTCTACTGGTCTTC+TGG | - | chr7_3:82393343-82393362 | Msa1130290:intron | 50.0% |
| CATTGTCAGCAGCATTGCCA+TGG | + | chr7_3:82393658-82393677 | None:intergenic | 50.0% | |
| TTTCACCCGGGAACACTACT+AGG | + | chr7_3:82394497-82394516 | None:intergenic | 50.0% | |
| AGTAGTGTTCCCGGGTGAAA+AGG | - | chr7_3:82394497-82394516 | Msa1130290:intron | 50.0% | |
| GTAGTGTTCCCGGGTGAAAA+GGG | - | chr7_3:82394498-82394517 | Msa1130290:intron | 50.0% | |
| TAGTGTTCCCGGGTGAAAAG+GGG | - | chr7_3:82394499-82394518 | Msa1130290:intron | 50.0% | |
| ! | TCTGTTTCCCCTTTTCACCC+GGG | + | chr7_3:82394509-82394528 | None:intergenic | 50.0% |
| ! | GTCTGTTTCCCCTTTTCACC+CGG | + | chr7_3:82394510-82394529 | None:intergenic | 50.0% |
| TACATAGCACTACCGTCGGT+CGG | + | chr7_3:82394548-82394567 | None:intergenic | 50.0% | |
| CTCCCACAGTCCTACTACAT+GGG | + | chr7_3:82394589-82394608 | None:intergenic | 50.0% | |
| ACTCCCACAGTCCTACTACA+TGG | + | chr7_3:82394590-82394609 | None:intergenic | 50.0% | |
| ACTGTGGGAGTCTCATGAAC+TGG | - | chr7_3:82394599-82394618 | Msa1130290:intron | 50.0% | |
| CTGTGGGAGTCTCATGAACT+GGG | - | chr7_3:82394600-82394619 | Msa1130290:intron | 50.0% | |
| GAGAGAAAGAGAAAGGGGGA+AGG | - | chr7_3:82394729-82394748 | Msa1130290:intron | 50.0% | |
| GAGAAAGAGAAAGGGGGAAG+GGG | - | chr7_3:82394731-82394750 | Msa1130290:intron | 50.0% | |
| CACCGTTCTCACCAGTTCTC+AGG | - | chr7_3:82390843-82390862 | Msa1130290:three_prime_UTR | 55.0% | |
| TGGGTTTGCAGGAATCACGG+TGG | - | chr7_3:82391312-82391331 | Msa1130290:intron | 55.0% | |
| GGGTTTGCAGGAATCACGGT+GGG | - | chr7_3:82391313-82391332 | Msa1130290:intron | 55.0% | |
| CAGTGTTCTCAGAGGAAGGC+AGG | + | chr7_3:82391885-82391904 | None:intergenic | 55.0% | |
| ! | GCCTTCCTCTGAGAACACTG+TGG | - | chr7_3:82391885-82391904 | Msa1130290:intron | 55.0% |
| TCTCTCAGGTCCAGCTCTCA+TGG | + | chr7_3:82392109-82392128 | None:intergenic | 55.0% | |
| TTAGGTCAAGGGCTGTGGAG+AGG | - | chr7_3:82392372-82392391 | Msa1130290:intron | 55.0% | |
| !! | GTGGCTTTGAAAATGGGCCC+TGG | - | chr7_3:82393267-82393286 | Msa1130290:CDS | 55.0% |
| !! | GCTTTGAAAATGGGCCCTGG+TGG | - | chr7_3:82393270-82393289 | Msa1130290:CDS | 55.0% |
| GTGTGGCCTAGTAGTGTTCC+CGG | - | chr7_3:82394488-82394507 | Msa1130290:intron | 55.0% | |
| TGTGGCCTAGTAGTGTTCCC+GGG | - | chr7_3:82394489-82394508 | Msa1130290:intron | 55.0% | |
| GTGGCGGCTCACCGTGATTC+TGG | - | chr7_3:82391361-82391380 | Msa1130290:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 82390736 | 82395786 | 82390736 | ID=Msa1130290;Name=Msa1130290 |
| chr7_3 | mRNA | 82390736 | 82395786 | 82390736 | ID=Msa1130290-mRNA-1;Parent=Msa1130290;Name=Msa1130290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.55|1|0.62|0.44|9|591|341 |
| chr7_3 | exon | 82390736 | 82391296 | 82390736 | ID=Msa1130290-mRNA-1:exon:24314;Parent=Msa1130290-mRNA-1 |
| chr7_3 | exon | 82392200 | 82392376 | 82392200 | ID=Msa1130290-mRNA-1:exon:24313;Parent=Msa1130290-mRNA-1 |
| chr7_3 | exon | 82392803 | 82392880 | 82392803 | ID=Msa1130290-mRNA-1:exon:24312;Parent=Msa1130290-mRNA-1 |
| chr7_3 | exon | 82393119 | 82393305 | 82393119 | ID=Msa1130290-mRNA-1:exon:24311;Parent=Msa1130290-mRNA-1 |
| chr7_3 | exon | 82393977 | 82394146 | 82393977 | ID=Msa1130290-mRNA-1:exon:24310;Parent=Msa1130290-mRNA-1 |
| chr7_3 | exon | 82394968 | 82395012 | 82394968 | ID=Msa1130290-mRNA-1:exon:24309;Parent=Msa1130290-mRNA-1 |
| chr7_3 | exon | 82395287 | 82395346 | 82395287 | ID=Msa1130290-mRNA-1:exon:24308;Parent=Msa1130290-mRNA-1 |
| chr7_3 | exon | 82395353 | 82395562 | 82395353 | ID=Msa1130290-mRNA-1:exon:24307;Parent=Msa1130290-mRNA-1 |
| chr7_3 | exon | 82395658 | 82395786 | 82395658 | ID=Msa1130290-mRNA-1:exon:24306;Parent=Msa1130290-mRNA-1 |
| chr7_3 | CDS | 82395658 | 82395786 | 82395658 | ID=Msa1130290-mRNA-1:cds;Parent=Msa1130290-mRNA-1 |
| chr7_3 | CDS | 82395353 | 82395562 | 82395353 | ID=Msa1130290-mRNA-1:cds;Parent=Msa1130290-mRNA-1 |
| chr7_3 | CDS | 82395287 | 82395346 | 82395287 | ID=Msa1130290-mRNA-1:cds;Parent=Msa1130290-mRNA-1 |
| chr7_3 | CDS | 82394968 | 82395012 | 82394968 | ID=Msa1130290-mRNA-1:cds;Parent=Msa1130290-mRNA-1 |
| chr7_3 | CDS | 82393977 | 82394146 | 82393977 | ID=Msa1130290-mRNA-1:cds;Parent=Msa1130290-mRNA-1 |
| chr7_3 | CDS | 82393119 | 82393305 | 82393119 | ID=Msa1130290-mRNA-1:cds;Parent=Msa1130290-mRNA-1 |
| chr7_3 | CDS | 82392803 | 82392880 | 82392803 | ID=Msa1130290-mRNA-1:cds;Parent=Msa1130290-mRNA-1 |
| chr7_3 | CDS | 82392230 | 82392376 | 82392230 | ID=Msa1130290-mRNA-1:cds;Parent=Msa1130290-mRNA-1 |
| chr7_3 | three_prime_UTR | 82392200 | 82392229 | 82392200 | ID=Msa1130290-mRNA-1:three_prime_utr;Parent=Msa1130290-mRNA-1 |
| chr7_3 | three_prime_UTR | 82390736 | 82391296 | 82390736 | ID=Msa1130290-mRNA-1:three_prime_utr;Parent=Msa1130290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
