Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827470 | XP_003598625.1 | 96.831 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827470 | sp|Q9FLE8|Y5986_ARATH | 48.780 | 164 | 66 | 6 | 116 | 261 | 225 | 388 | 2.30e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827470 | G7IYV7 | 96.831 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0827470 | -0.800855 | 1.184612e-48 | -8.615850e-47 |
| Msa0000550 | Msa0827470 | -0.803140 | 4.017738e-49 | -8.615850e-47 |
| Msa0000570 | Msa0827470 | -0.818832 | 1.595123e-52 | -8.615850e-47 |
| Msa0003560 | Msa0827470 | 0.801752 | 7.763473e-49 | -8.615850e-47 |
| Msa0025740 | Msa0827470 | 0.804401 | 2.198787e-49 | -8.615850e-47 |
| Msa0038020 | Msa0827470 | 0.810269 | 1.253746e-50 | -8.615850e-47 |
| Msa0050730 | Msa0827470 | 0.800760 | 1.238758e-48 | -8.615850e-47 |
| Msa0050760 | Msa0827470 | 0.804671 | 1.931678e-49 | -8.615850e-47 |
| Msa0052030 | Msa0827470 | 0.817633 | 2.979968e-52 | -8.615850e-47 |
| Msa0058270 | Msa0827470 | 0.801792 | 7.616420e-49 | -8.615850e-47 |
| Msa0071550 | Msa0827470 | 0.811687 | 6.179305e-51 | -8.615850e-47 |
| Msa0085720 | Msa0827470 | 0.848931 | 4.475459e-60 | -8.615850e-47 |
| Msa0092990 | Msa0827470 | 0.800713 | 1.266513e-48 | -8.615850e-47 |
| Msa0117770 | Msa0827470 | 0.805958 | 1.038126e-49 | -8.615850e-47 |
| Msa0120340 | Msa0827470 | 0.833521 | 5.086047e-56 | -8.615850e-47 |
| Msa0613460 | Msa0827470 | 0.812987 | 3.214901e-51 | -8.615850e-47 |
| Msa0615340 | Msa0827470 | 0.800558 | 1.362258e-48 | -8.615850e-47 |
| Msa0626990 | Msa0827470 | 0.860747 | 1.665376e-63 | -8.615850e-47 |
| Msa0627350 | Msa0827470 | 0.864702 | 1.005068e-64 | -8.615850e-47 |
| Msa0637070 | Msa0827470 | 0.818563 | 1.836471e-52 | -8.615850e-47 |
| Msa0654010 | Msa0827470 | 0.817487 | 3.215365e-52 | -8.615850e-47 |
| Msa0660300 | Msa0827470 | 0.832132 | 1.125514e-55 | -8.615850e-47 |
| Msa0662650 | Msa0827470 | 0.804445 | 2.152844e-49 | -8.615850e-47 |
| Msa0679550 | Msa0827470 | 0.872570 | 2.872823e-67 | -8.615850e-47 |
| Msa0680060 | Msa0827470 | 0.806385 | 8.440815e-50 | -8.615850e-47 |
| Msa0694250 | Msa0827470 | 0.816955 | 4.235141e-52 | -8.615850e-47 |
| Msa0708860 | Msa0827470 | 0.805175 | 1.515718e-49 | -8.615850e-47 |
| Msa0724560 | Msa0827470 | 0.814374 | 1.591445e-51 | -8.615850e-47 |
| Msa0724950 | Msa0827470 | 0.807940 | 3.954476e-50 | -8.615850e-47 |
| Msa0731180 | Msa0827470 | 0.822435 | 2.371988e-53 | -8.615850e-47 |
| Msa0735160 | Msa0827470 | 0.817840 | 2.675783e-52 | -8.615850e-47 |
| Msa0743120 | Msa0827470 | -0.833349 | 5.611222e-56 | -8.615850e-47 |
| Msa0751210 | Msa0827470 | 0.800000 | 1.769342e-48 | -8.615850e-47 |
| Msa0757050 | Msa0827470 | 0.824329 | 8.562592e-54 | -8.615850e-47 |
| Msa0757080 | Msa0827470 | 0.808027 | 3.788428e-50 | -8.615850e-47 |
| Msa0763080 | Msa0827470 | 0.817699 | 2.879940e-52 | -8.615850e-47 |
| Msa0771580 | Msa0827470 | 0.800136 | 1.660160e-48 | -8.615850e-47 |
| Msa0773310 | Msa0827470 | 0.829502 | 4.967777e-55 | -8.615850e-47 |
| Msa0794320 | Msa0827470 | 0.803746 | 3.009282e-49 | -8.615850e-47 |
| Msa0798030 | Msa0827470 | 0.820759 | 5.789408e-53 | -8.615850e-47 |
| Msa0799060 | Msa0827470 | 0.822912 | 1.837971e-53 | -8.615850e-47 |
| Msa0810760 | Msa0827470 | 0.805167 | 1.521084e-49 | -8.615850e-47 |
| Msa0818110 | Msa0827470 | 0.825618 | 4.248198e-54 | -8.615850e-47 |
| Msa0827470 | Msa0845070 | 0.823906 | 1.076004e-53 | -8.615850e-47 |
| Msa0827470 | Msa0848900 | 0.811927 | 5.480073e-51 | -8.615850e-47 |
| Msa0827470 | Msa0860410 | 0.800292 | 1.543373e-48 | -8.615850e-47 |
| Msa0827470 | Msa0864470 | -0.805938 | 1.048286e-49 | -8.615850e-47 |
| Msa0827470 | Msa0908170 | 0.837218 | 5.915950e-57 | -8.615850e-47 |
| Msa0827470 | Msa0910980 | -0.823901 | 1.078946e-53 | -8.615850e-47 |
| Msa0827470 | Msa0929920 | 0.808583 | 2.883488e-50 | -8.615850e-47 |
| Msa0827470 | Msa0946080 | 0.806130 | 9.552499e-50 | -8.615850e-47 |
| Msa0827470 | Msa0959010 | 0.823875 | 1.094523e-53 | -8.615850e-47 |
| Msa0827470 | Msa0960160 | 0.819141 | 1.356995e-52 | -8.615850e-47 |
| Msa0827470 | Msa0961420 | -0.803678 | 3.108182e-49 | -8.615850e-47 |
| Msa0827470 | Msa0961490 | 0.809864 | 1.532681e-50 | -8.615850e-47 |
| Msa0827470 | Msa0964130 | 0.820466 | 6.759708e-53 | -8.615850e-47 |
| Msa0827470 | Msa0982270 | 0.830235 | 3.292534e-55 | -8.615850e-47 |
| Msa0827470 | Msa0993530 | 0.813755 | 2.180159e-51 | -8.615850e-47 |
| Msa0827470 | Msa0999040 | 0.805169 | 1.519950e-49 | -8.615850e-47 |
| Msa0827470 | Msa1006850 | 0.804623 | 1.976251e-49 | -8.615850e-47 |
| Msa0827470 | Msa1021510 | 0.816907 | 4.341476e-52 | -8.615850e-47 |
| Msa0827470 | Msa1032440 | 0.825453 | 4.649970e-54 | -8.615850e-47 |
| Msa0827470 | Msa1037700 | -0.814685 | 1.358223e-51 | -8.615850e-47 |
| Msa0827470 | Msa1039880 | 0.822301 | 2.548468e-53 | -8.615850e-47 |
| Msa0827470 | Msa1047720 | 0.803493 | 3.395062e-49 | -8.615850e-47 |
| Msa0827470 | Msa1073070 | -0.809993 | 1.437509e-50 | -8.615850e-47 |
| Msa0827470 | Msa1075080 | -0.803543 | 3.315671e-49 | -8.615850e-47 |
| Msa0827470 | Msa1091830 | 0.800873 | 1.175150e-48 | -8.615850e-47 |
| Msa0827470 | Msa1092090 | 0.839462 | 1.561524e-57 | -8.615850e-47 |
| Msa0827470 | Msa1105500 | 0.805910 | 1.062303e-49 | -8.615850e-47 |
| Msa0827470 | Msa1109820 | 0.818786 | 1.634630e-52 | -8.615850e-47 |
| Msa0827470 | Msa1115280 | 0.802343 | 5.867854e-49 | -8.615850e-47 |
| Msa0827470 | Msa1118110 | 0.817660 | 2.939165e-52 | -8.615850e-47 |
| Msa0827470 | Msa1130210 | -0.806058 | 9.888617e-50 | -8.615850e-47 |
| Msa0827470 | Msa1130270 | -0.800444 | 1.437196e-48 | -8.615850e-47 |
| Msa0827470 | Msa1130290 | -0.807451 | 5.023834e-50 | -8.615850e-47 |
| Msa0827470 | Msa1135880 | 0.824508 | 7.769698e-54 | -8.615850e-47 |
| Msa0827470 | Msa1157020 | 0.800671 | 1.291795e-48 | -8.615850e-47 |
| Msa0827470 | Msa1164020 | 0.809042 | 2.300967e-50 | -8.615850e-47 |
| Msa0827470 | Msa1174310 | 0.842186 | 3.015230e-58 | -8.615850e-47 |
| Msa0827470 | Msa1207460 | -0.802757 | 4.821181e-49 | -8.615850e-47 |
| Msa0827470 | Msa1214880 | 0.819880 | 9.205891e-53 | -8.615850e-47 |
| Msa0827470 | Msa1218650 | 0.800371 | 1.487043e-48 | -8.615850e-47 |
| Msa0827470 | Msa1219520 | 0.821575 | 3.753083e-53 | -8.615850e-47 |
| Msa0827470 | Msa1222280 | 0.834899 | 2.295147e-56 | -8.615850e-47 |
| Msa0827470 | Msa1228160 | -0.851751 | 7.238677e-61 | -8.615850e-47 |
| Msa0827470 | Msa1229610 | 0.814190 | 1.747574e-51 | -8.615850e-47 |
| Msa0827470 | Msa1229850 | 0.829052 | 6.387231e-55 | -8.615850e-47 |
| Msa0827470 | Msa1233500 | 0.828548 | 8.455915e-55 | -8.615850e-47 |
| Msa0827470 | Msa1235400 | 0.826501 | 2.620717e-54 | -8.615850e-47 |
| Msa0827470 | Msa1236070 | -0.827272 | 1.714377e-54 | -8.615850e-47 |
| Msa0827470 | Msa1247030 | 0.805008 | 1.642344e-49 | -8.615850e-47 |
| Msa0827470 | Msa1249920 | 0.811123 | 8.195071e-51 | -8.615850e-47 |
| Msa0827470 | Msa1263290 | -0.819061 | 1.415051e-52 | -8.615850e-47 |
| Msa0827470 | Msa1272320 | 0.808081 | 3.690499e-50 | -8.615850e-47 |
| Msa0827470 | Msa1276440 | 0.822108 | 2.825257e-53 | -8.615850e-47 |
| Msa0827470 | Msa1289530 | 0.803160 | 3.979373e-49 | -8.615850e-47 |
| Msa0827470 | Msa1297310 | 0.801268 | 9.756850e-49 | -8.615850e-47 |
| Msa0827470 | Msa1300860 | 0.801194 | 1.009988e-48 | -8.615850e-47 |
| Msa0827470 | Msa1306750 | 0.866173 | 3.459095e-65 | -8.615850e-47 |
| Msa0827470 | Msa1307740 | 0.830226 | 3.308671e-55 | -8.615850e-47 |
| Msa0827470 | Msa1308330 | -0.803814 | 2.912649e-49 | -8.615850e-47 |
| Msa0827470 | Msa1310220 | 0.807574 | 4.728693e-50 | -8.615850e-47 |
| Msa0827470 | Msa1314770 | 0.854901 | 9.039707e-62 | -8.615850e-47 |
| Msa0827470 | Msa1322190 | 0.817826 | 2.695383e-52 | -8.615850e-47 |
| Msa0827470 | Msa1338250 | 0.810984 | 8.781216e-51 | -8.615850e-47 |
| Msa0827470 | Msa1350690 | 0.830461 | 2.898353e-55 | -8.615850e-47 |
| Msa0827470 | Msa1352540 | -0.803635 | 3.172683e-49 | -8.615850e-47 |
| Msa0827470 | Msa1369530 | 0.801312 | 9.553581e-49 | -8.615850e-47 |
| Msa0827470 | Msa1373350 | 0.840191 | 1.008849e-57 | -8.615850e-47 |
| Msa0827470 | Msa1379710 | 0.800888 | 1.166869e-48 | -8.615850e-47 |
| Msa0827470 | Msa1393040 | 0.826025 | 3.401942e-54 | -8.615850e-47 |
| Msa0827470 | Msa1404670 | 0.803689 | 3.092260e-49 | -8.615850e-47 |
| Msa0827470 | Msa1407650 | 0.802757 | 4.821181e-49 | -8.615850e-47 |
| Msa0827470 | Msa1409350 | 0.820009 | 8.600501e-53 | -8.615850e-47 |
| Msa0827470 | Msa1415130 | 0.800569 | 1.355475e-48 | -8.615850e-47 |
| Msa0827470 | Msa1419110 | 0.805853 | 1.092297e-49 | -8.615850e-47 |
| Msa0827470 | Msa1422840 | 0.837722 | 4.395146e-57 | -8.615850e-47 |
| Msa0827470 | Msa1435400 | 0.811475 | 6.872480e-51 | -8.615850e-47 |
| Msa0827470 | Msa1440600 | 0.805949 | 1.042810e-49 | -8.615850e-47 |
| Msa0827470 | Msa1440940 | 0.801493 | 8.771743e-49 | -8.615850e-47 |
| Msa0827470 | Msa1441190 | 0.801754 | 7.754200e-49 | -8.615850e-47 |
| Msa0827470 | Msa1444250 | -0.802492 | 5.469189e-49 | -8.615850e-47 |
| Msa0827470 | Msa1445030 | 0.825257 | 5.172228e-54 | -8.615850e-47 |
| Msa0827470 | Msa1451620 | -0.817629 | 2.986823e-52 | -8.615850e-47 |
| Msa0827470 | Msa1455390 | 0.803207 | 3.892656e-49 | -8.615850e-47 |
| Msa0827470 | Msa1459760 | -0.805059 | 1.602610e-49 | -8.615850e-47 |
| Msa0124550 | Msa0827470 | 0.829475 | 5.042877e-55 | -8.615850e-47 |
| Msa0130520 | Msa0827470 | 0.808131 | 3.600106e-50 | -8.615850e-47 |
| Msa0140170 | Msa0827470 | 0.800332 | 1.514622e-48 | -8.615850e-47 |
| Msa0163780 | Msa0827470 | 0.839171 | 1.858317e-57 | -8.615850e-47 |
| Msa0172780 | Msa0827470 | 0.807138 | 5.850523e-50 | -8.615850e-47 |
| Msa0175050 | Msa0827470 | 0.825152 | 5.477421e-54 | -8.615850e-47 |
| Msa0188050 | Msa0827470 | 0.820887 | 5.409741e-53 | -8.615850e-47 |
| Msa0199800 | Msa0827470 | -0.806632 | 7.484319e-50 | -8.615850e-47 |
| Msa0217400 | Msa0827470 | 0.800108 | 1.682386e-48 | -8.615850e-47 |
| Msa0223290 | Msa0827470 | 0.807989 | 3.860087e-50 | -8.615850e-47 |
| Msa0223380 | Msa0827470 | 0.836858 | 7.313312e-57 | -8.615850e-47 |
| Msa0226290 | Msa0827470 | 0.806909 | 6.542306e-50 | -8.615850e-47 |
| Msa0233610 | Msa0827470 | 0.808289 | 3.331495e-50 | -8.615850e-47 |
| Msa0365490 | Msa0827470 | 0.871775 | 5.286826e-67 | -8.615850e-47 |
| Msa0377440 | Msa0827470 | 0.803563 | 3.283796e-49 | -8.615850e-47 |
| Msa0388030 | Msa0827470 | -0.840666 | 7.577139e-58 | -8.615850e-47 |
| Msa0389810 | Msa0827470 | 0.828314 | 9.630912e-55 | -8.615850e-47 |
| Msa0444090 | Msa0827470 | 0.939133 | 2.120544e-99 | -8.615850e-47 |
| Msa0445280 | Msa0827470 | 0.820316 | 7.317267e-53 | -8.615850e-47 |
| Msa0458440 | Msa0827470 | 0.852353 | 4.881263e-61 | -8.615850e-47 |
| Msa0464420 | Msa0827470 | 0.801295 | 9.630057e-49 | -8.615850e-47 |
| Msa0464900 | Msa0827470 | 0.848472 | 5.997623e-60 | -8.615850e-47 |
| Msa0465680 | Msa0827470 | -0.809293 | 2.032332e-50 | -8.615850e-47 |
| Msa0468130 | Msa0827470 | 0.826250 | 3.007636e-54 | -8.615850e-47 |
| Msa0473240 | Msa0827470 | 0.822168 | 2.736404e-53 | -8.615850e-47 |
| Msa0480600 | Msa0827470 | 0.806605 | 7.585263e-50 | -8.615850e-47 |
| Msa0239690 | Msa0827470 | 0.815636 | 8.351923e-52 | -8.615850e-47 |
| Msa0266210 | Msa0827470 | 0.831649 | 1.480606e-55 | -8.615850e-47 |
| Msa0269450 | Msa0827470 | 0.812031 | 5.200651e-51 | -8.615850e-47 |
| Msa0274350 | Msa0827470 | 0.814691 | 1.354131e-51 | -8.615850e-47 |
| Msa0274490 | Msa0827470 | 0.801136 | 1.038236e-48 | -8.615850e-47 |
| Msa0276920 | Msa0827470 | 0.807607 | 4.654467e-50 | -8.615850e-47 |
| Msa0278900 | Msa0827470 | 0.822414 | 2.399661e-53 | -8.615850e-47 |
| Msa0279210 | Msa0827470 | -0.834205 | 3.429522e-56 | -8.615850e-47 |
| Msa0279250 | Msa0827470 | -0.800211 | 1.602798e-48 | -8.615850e-47 |
| Msa0287670 | Msa0827470 | 0.829104 | 6.204504e-55 | -8.615850e-47 |
| Msa0304700 | Msa0827470 | 0.813709 | 2.231217e-51 | -8.615850e-47 |
| Msa0314120 | Msa0827470 | 0.806003 | 1.015944e-49 | -8.615850e-47 |
| Msa0314250 | Msa0827470 | 0.812154 | 4.891078e-51 | -8.615850e-47 |
| Msa0318970 | Msa0827470 | -0.823777 | 1.153956e-53 | -8.615850e-47 |
| Msa0335040 | Msa0827470 | 0.810121 | 1.349159e-50 | -8.615850e-47 |
| Msa0344870 | Msa0827470 | 0.813492 | 2.490125e-51 | -8.615850e-47 |
| Msa0347650 | Msa0827470 | 0.805185 | 1.507886e-49 | -8.615850e-47 |
| Msa0484780 | Msa0827470 | 0.806674 | 7.333406e-50 | -8.615850e-47 |
| Msa0491500 | Msa0827470 | 0.889753 | 1.825914e-73 | -8.615850e-47 |
| Msa0491520 | Msa0827470 | 0.915127 | 8.510827e-85 | -8.615850e-47 |
| Msa0505060 | Msa0827470 | 0.840546 | 8.148781e-58 | -8.615850e-47 |
| Msa0510040 | Msa0827470 | 0.804274 | 2.336832e-49 | -8.615850e-47 |
| Msa0525610 | Msa0827470 | 0.821714 | 3.486719e-53 | -8.615850e-47 |
| Msa0530650 | Msa0827470 | 0.860878 | 1.518855e-63 | -8.615850e-47 |
| Msa0537770 | Msa0827470 | 0.810796 | 9.643726e-51 | -8.615850e-47 |
| Msa0558690 | Msa0827470 | 0.818316 | 2.089159e-52 | -8.615850e-47 |
| Msa0580000 | Msa0827470 | 0.808130 | 3.602339e-50 | -8.615850e-47 |
| Msa0581920 | Msa0827470 | 0.825733 | 3.990078e-54 | -8.615850e-47 |
| Msa0587190 | Msa0827470 | 0.869685 | 2.573431e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827470 | MtrunA17_Chr3g0083531 | 96.831 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 0.0 | 558 |
| Msa0827470 | MtrunA17_Chr8g0352771 | 51.880 | 266 | 104 | 3 | 2 | 264 | 13 | 257 | 6.28e-86 | 257 |
| Msa0827470 | MtrunA17_Chr7g0256501 | 63.816 | 152 | 54 | 1 | 111 | 261 | 273 | 424 | 2.10e-69 | 221 |
| Msa0827470 | MtrunA17_Chr1g0171871 | 60.000 | 160 | 55 | 1 | 111 | 261 | 204 | 363 | 7.22e-67 | 212 |
| Msa0827470 | MtrunA17_Chr3g0105871 | 49.351 | 154 | 75 | 3 | 111 | 263 | 83 | 234 | 1.05e-49 | 164 |
| Msa0827470 | MtrunA17_Chr5g0437471 | 53.061 | 147 | 67 | 2 | 115 | 261 | 94 | 238 | 3.19e-49 | 163 |
| Msa0827470 | MtrunA17_Chr5g0431071 | 42.246 | 187 | 99 | 3 | 82 | 261 | 69 | 253 | 1.41e-46 | 157 |
| Msa0827470 | MtrunA17_Chr3g0113971 | 51.389 | 144 | 68 | 2 | 118 | 261 | 93 | 234 | 2.22e-45 | 153 |
| Msa0827470 | MtrunA17_Chr7g0266401 | 45.946 | 148 | 78 | 1 | 114 | 261 | 259 | 404 | 1.07e-40 | 145 |
| Msa0827470 | MtrunA17_Chr1g0196971 | 46.309 | 149 | 78 | 2 | 114 | 262 | 223 | 369 | 5.02e-40 | 142 |
| Msa0827470 | MtrunA17_Chr7g0267591 | 45.513 | 156 | 74 | 3 | 116 | 262 | 126 | 279 | 6.24e-40 | 140 |
| Msa0827470 | MtrunA17_Chr8g0388481 | 45.223 | 157 | 77 | 3 | 113 | 261 | 212 | 367 | 1.01e-36 | 134 |
| Msa0827470 | MtrunA17_Chr8g0392761 | 45.161 | 155 | 80 | 2 | 113 | 262 | 120 | 274 | 1.75e-36 | 131 |
| Msa0827470 | MtrunA17_Chr7g0217121 | 44.242 | 165 | 73 | 3 | 116 | 261 | 267 | 431 | 3.22e-35 | 131 |
| Msa0827470 | MtrunA17_Chr6g0453031 | 42.197 | 173 | 80 | 6 | 109 | 261 | 250 | 422 | 1.20e-34 | 129 |
| Msa0827470 | MtrunA17_Chr3g0089011 | 37.255 | 153 | 78 | 3 | 128 | 262 | 2 | 154 | 9.96e-24 | 94.4 |
| Msa0827470 | MtrunA17_Chr5g0412021 | 35.484 | 93 | 53 | 2 | 156 | 241 | 1 | 93 | 8.79e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827470 | AT5G13810.1 | 55.682 | 264 | 97 | 5 | 6 | 262 | 23 | 273 | 2.71e-95 | 282 |
| Msa0827470 | AT2G41330.1 | 56.442 | 163 | 69 | 2 | 101 | 261 | 239 | 401 | 1.80e-55 | 184 |
| Msa0827470 | AT3G57070.1 | 56.494 | 154 | 65 | 1 | 110 | 261 | 262 | 415 | 1.48e-54 | 182 |
| Msa0827470 | AT5G58530.1 | 45.000 | 200 | 94 | 5 | 76 | 262 | 70 | 266 | 1.11e-49 | 166 |
| Msa0827470 | AT5G39865.1 | 48.780 | 164 | 66 | 6 | 116 | 261 | 225 | 388 | 2.34e-42 | 149 |
| Msa0827470 | AT5G06470.1 | 41.618 | 173 | 86 | 4 | 102 | 262 | 70 | 239 | 7.76e-41 | 142 |
| Msa0827470 | AT3G28850.1 | 42.614 | 176 | 71 | 3 | 116 | 261 | 251 | 426 | 1.57e-38 | 140 |
| Msa0827470 | AT4G10630.1 | 46.584 | 161 | 74 | 4 | 114 | 262 | 174 | 334 | 2.15e-38 | 138 |
| Msa0827470 | AT1G32760.1 | 49.689 | 161 | 73 | 4 | 110 | 262 | 154 | 314 | 2.48e-38 | 137 |
| Msa0827470 | AT3G11773.1 | 46.479 | 142 | 73 | 3 | 121 | 262 | 12 | 150 | 4.68e-36 | 126 |
| Msa0827470 | AT5G03870.1 | 44.667 | 150 | 82 | 1 | 114 | 262 | 235 | 384 | 2.47e-35 | 131 |
| Msa0827470 | AT1G64500.1 | 43.421 | 152 | 78 | 3 | 118 | 261 | 214 | 365 | 3.14e-34 | 127 |
| Msa0827470 | AT5G01420.1 | 43.333 | 150 | 82 | 3 | 114 | 262 | 254 | 401 | 8.06e-32 | 122 |
| Msa0827470 | AT3G11773.2 | 47.321 | 112 | 56 | 3 | 151 | 262 | 92 | 200 | 6.08e-26 | 102 |
Find 78 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGGTTTAGGGTTT+GGG | 0.218316 | 5_3:-68745130 | Msa0827470:CDS |
| ATCAGAGAATAGGAGGAAAA+AGG | 0.262644 | 5_3:+68743348 | None:intergenic |
| TGTCCTTGTTGCGCCTGTTC+TGG | 0.268180 | 5_3:-68743716 | Msa0827470:CDS |
| TCTGTTGTTGTTTATGTAGT+TGG | 0.287725 | 5_3:+68745858 | None:intergenic |
| TTATATTACAGAAGCGATTA+TGG | 0.292045 | 5_3:-68743577 | Msa0827470:three_prime_UTR |
| TGCCTCATTTCACAATATAA+AGG | 0.292837 | 5_3:+68743646 | None:intergenic |
| ATTAAACATAACTGCAAAAC+TGG | 0.316340 | 5_3:-68743459 | Msa0827470:three_prime_UTR |
| CCACGTGCGGCTTCGAAGTT+AGG | 0.339185 | 5_3:-68745297 | Msa0827470:CDS |
| ATGAAAAGGGTATGTTGTTT+CGG | 0.362170 | 5_3:-68745245 | Msa0827470:CDS |
| CTGCCTCAAGTGTTCGTTAG+AGG | 0.365217 | 5_3:-68743965 | Msa0827470:CDS |
| ATTAAGTCTCTATTTGAAAC+TGG | 0.365236 | 5_3:-68743917 | Msa0827470:CDS |
| AGGATTTGAAAGAAAGAAGT+TGG | 0.382704 | 5_3:+68745831 | None:intergenic |
| CATAAACAAACAAGAGTAAT+GGG | 0.396549 | 5_3:+68743317 | None:intergenic |
| TGCTTTCAGAAAAGAATTGC+AGG | 0.412980 | 5_3:-68745079 | Msa0827470:intron |
| CTTCGAAGCCGCACGTGGTT+CGG | 0.416891 | 5_3:+68745302 | None:intergenic |
| TTGAAACTGGTGAATTGAAA+AGG | 0.417136 | 5_3:-68743904 | Msa0827470:CDS |
| TTAGGTCAGAAGCCGCGTTC+TGG | 0.417750 | 5_3:-68745279 | Msa0827470:CDS |
| TGATGAAAGAGATGTTTCTA+TGG | 0.421139 | 5_3:-68745106 | Msa0827470:CDS |
| CGGTCTAGAAATTCGTTGAA+TGG | 0.435296 | 5_3:+68745483 | None:intergenic |
| TCAGAAGCCGCGTTCTGGTT+CGG | 0.442103 | 5_3:-68745274 | Msa0827470:CDS |
| GCCGCACGTGGTTCGGAAGA+AGG | 0.443209 | 5_3:+68745309 | None:intergenic |
| AACAAAGCCAGGCTTCATCT+TGG | 0.443746 | 5_3:+68743865 | None:intergenic |
| GGGTATGTTGTTTCGGTTGG+CGG | 0.446125 | 5_3:-68745238 | Msa0827470:CDS |
| ACAAAGCCAGGCTTCATCTT+GGG | 0.451900 | 5_3:+68743866 | None:intergenic |
| ATCCTTTATATTGTGAAATG+AGG | 0.457812 | 5_3:-68743648 | Msa0827470:exon |
| AAGCAAATTCTACGGTTCAA+TGG | 0.458730 | 5_3:-68745448 | Msa0827470:CDS |
| AGGGATAAGAAGAACGTTTG+AGG | 0.460025 | 5_3:-68745175 | Msa0827470:CDS |
| GCGAGAGTTGTGGCGATGCT+AGG | 0.463600 | 5_3:-68743841 | Msa0827470:CDS |
| ACAGAACATCATTCCAGAAC+AGG | 0.474894 | 5_3:+68743703 | None:intergenic |
| TGGTTCGGAAGAAGATGAAA+AGG | 0.475046 | 5_3:-68745259 | Msa0827470:CDS |
| ATTGTTGCTGCAGTCTGTGA+TGG | 0.475824 | 5_3:-68744005 | Msa0827470:intron |
| GTAGAATTTGCTTAACGAAC+CGG | 0.485771 | 5_3:+68745458 | None:intergenic |
| ATCATCTTTACGTGGAAGAA+TGG | 0.487437 | 5_3:-68745415 | Msa0827470:CDS |
| CAACTCTCGCAAACAAAGCC+AGG | 0.491107 | 5_3:+68743854 | None:intergenic |
| GGAACACAACATCAGAGAAT+AGG | 0.493847 | 5_3:+68743338 | None:intergenic |
| AAAGGGTATGTTGTTTCGGT+TGG | 0.494457 | 5_3:-68745241 | Msa0827470:CDS |
| ACAAAACAAAACGATGTTCA+AGG | 0.501444 | 5_3:+68743512 | None:intergenic |
| TCATAAACAAACAAGAGTAA+TGG | 0.506338 | 5_3:+68743316 | None:intergenic |
| GTGAGAATTGCAGTGGAAGT+AGG | 0.507165 | 5_3:-68743808 | Msa0827470:CDS |
| AGGGTTGTTGAAAAGATGCT+TGG | 0.515319 | 5_3:-68743765 | Msa0827470:CDS |
| ACCTTCTTCCGAACCACGTG+CGG | 0.515628 | 5_3:-68745310 | Msa0827470:CDS |
| GAATTGAAAAGGATTCTTGA+AGG | 0.524790 | 5_3:-68743893 | Msa0827470:CDS |
| TGCTTGGAGTGCAATGAGAA+TGG | 0.530091 | 5_3:-68743749 | Msa0827470:CDS |
| CTATAGATAATGATAAAGAA+TGG | 0.531876 | 5_3:-68743383 | Msa0827470:three_prime_UTR |
| AACGAATTTCTAGACCGGTC+CGG | 0.532633 | 5_3:-68745477 | Msa0827470:CDS |
| AAGCGATTATGGTTGCAGCC+TGG | 0.543214 | 5_3:-68743566 | Msa0827470:three_prime_UTR |
| ATTTGCTTAACGAACCGGAC+CGG | 0.549932 | 5_3:+68745463 | None:intergenic |
| GGTTGGCGGATGCTGATGAT+CGG | 0.555952 | 5_3:-68745224 | Msa0827470:CDS |
| GGCTTTGTTTGCGAGAGTTG+TGG | 0.556620 | 5_3:-68743851 | Msa0827470:CDS |
| AAATTATTTGATGAGGACGA+AGG | 0.563626 | 5_3:-68743785 | Msa0827470:CDS |
| TGTATTTGACGAGTTTGAGA+GGG | 0.565359 | 5_3:-68745194 | Msa0827470:CDS |
| GGTTCGGAAGAAGATGAAAA+GGG | 0.565516 | 5_3:-68745258 | Msa0827470:CDS |
| AATTATTTGATGAGGACGAA+GGG | 0.567574 | 5_3:-68743784 | Msa0827470:CDS |
| GTTAGAGGAAAGTACATTGG+TGG | 0.570244 | 5_3:-68743950 | Msa0827470:CDS |
| TTGTTGCTGCAGTCTGTGAT+GGG | 0.579187 | 5_3:-68744004 | Msa0827470:intron |
| ACACAACATCAGAGAATAGG+AGG | 0.583307 | 5_3:+68743341 | None:intergenic |
| GGTTCGTTAAGCAAATTCTA+CGG | 0.596106 | 5_3:-68745456 | Msa0827470:CDS |
| TTCGTTAGAGGAAAGTACAT+TGG | 0.597968 | 5_3:-68743953 | Msa0827470:CDS |
| TCTTCTTCCGAACCAGAACG+CGG | 0.600432 | 5_3:+68745267 | None:intergenic |
| ACGTGTGCATCGTGTTTGAT+CGG | 0.601162 | 5_3:+68745529 | None:intergenic |
| GTGTATTTGACGAGTTTGAG+AGG | 0.605361 | 5_3:-68745195 | Msa0827470:CDS |
| AAGTAGGAAATTATTTGATG+AGG | 0.609112 | 5_3:-68743792 | Msa0827470:CDS |
| CATTCAACGAATTTCTAGAC+CGG | 0.610493 | 5_3:-68745482 | Msa0827470:CDS |
| CTTCCACTGCAATTCTCACA+AGG | 0.614637 | 5_3:+68743812 | None:intergenic |
| AACGTTTGAGGATTGTAATG+CGG | 0.616814 | 5_3:-68745163 | Msa0827470:CDS |
| ATACCTTGTGAGAATTGCAG+TGG | 0.623291 | 5_3:-68743815 | Msa0827470:CDS |
| ATTCCAGAACAGGCGCAACA+AGG | 0.629811 | 5_3:+68743713 | None:intergenic |
| GGATGCTGATGATCGGATTG+TGG | 0.634382 | 5_3:-68745217 | Msa0827470:CDS |
| CCTAACTTCGAAGCCGCACG+TGG | 0.643711 | 5_3:+68745297 | None:intergenic |
| GCTGCAGTCTGTGATGGGTG+AGG | 0.646757 | 5_3:-68743999 | Msa0827470:intron |
| TTTCCTCTAACGAACACTTG+AGG | 0.653351 | 5_3:+68743962 | None:intergenic |
| AAAGAGTGAAATGAAATGTG+TGG | 0.656253 | 5_3:+68745808 | None:intergenic |
| GCAATGAGAATGGACTTGTA+AGG | 0.683440 | 5_3:-68743739 | Msa0827470:CDS |
| GGAATTTAAAACCATGACAG+TGG | 0.684677 | 5_3:-68743545 | Msa0827470:three_prime_UTR |
| TTCTGTGAGTATGAAAACGA+GGG | 0.688210 | 5_3:-68743686 | Msa0827470:CDS |
| GAGTGAAATGAAATGTGTGG+AGG | 0.701200 | 5_3:+68745811 | None:intergenic |
| GTTCTGTGAGTATGAAAACG+AGG | 0.730092 | 5_3:-68743687 | Msa0827470:CDS |
| TCAATGAAATCATCTTTACG+TGG | 0.737140 | 5_3:-68745423 | Msa0827470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTGTTTTTGTTTA+TGG | + | chr5_3:68743463-68743482 | None:intergenic | 10.0% |
| !!! | TTTTTTTTACTAGAAAAAAA+GGG | + | chr5_3:68744536-68744555 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTACTAGAAAAAA+AGG | + | chr5_3:68744537-68744556 | None:intergenic | 10.0% |
| !! | TATAAAATTATGTTCTATAT+TGG | + | chr5_3:68745091-68745110 | None:intergenic | 10.0% |
| !! | AATATAATCATACAAAATAC+TGG | + | chr5_3:68744311-68744330 | None:intergenic | 15.0% |
| !! | TTTCAAAATGTAGTTAAATT+GGG | + | chr5_3:68744740-68744759 | None:intergenic | 15.0% |
| !!! | TTTTTTCTGTTTGCAATATT+TGG | + | chr5_3:68743489-68743508 | None:intergenic | 20.0% |
| !! | AAAAAGAACAAAAAGAAAGA+AGG | + | chr5_3:68744128-68744147 | None:intergenic | 20.0% |
| !!! | AATTTTTACCGATTTAAAGA+TGG | - | chr5_3:68744440-68744459 | Msa0827470:intron | 20.0% |
| !!! | GTTACAATGTTTTTAACATA+TGG | - | chr5_3:68744462-68744481 | Msa0827470:intron | 20.0% |
| !! | TTAACATATGGTGAAAAATA+AGG | - | chr5_3:68744474-68744493 | Msa0827470:intron | 20.0% |
| !! | TAACATATGGTGAAAAATAA+GGG | - | chr5_3:68744475-68744494 | Msa0827470:intron | 20.0% |
| !! | TAATTGTTGATGCATAATAA+AGG | - | chr5_3:68744629-68744648 | Msa0827470:intron | 20.0% |
| !! | GTTTCAAAATGTAGTTAAAT+TGG | + | chr5_3:68744741-68744760 | None:intergenic | 20.0% |
| !! | AATTAGAAAAGCTATGAATT+TGG | - | chr5_3:68744832-68744851 | Msa0827470:intron | 20.0% |
| !! | ATTAGAAAAGCTATGAATTT+GGG | - | chr5_3:68744833-68744852 | Msa0827470:intron | 20.0% |
| !! | AATATTAACAAGCTTTCAAA+AGG | + | chr5_3:68745026-68745045 | None:intergenic | 20.0% |
| !! | CTATAGATAATGATAAAGAA+TGG | - | chr5_3:68745791-68745810 | Msa0827470:five_prime_UTR | 20.0% |
| !!! | TTTGTTTTTGTTTATGGCTA+TGG | + | chr5_3:68743457-68743476 | None:intergenic | 25.0% |
| ! | AAACATGCATTAAATATGTC+TGG | + | chr5_3:68744160-68744179 | None:intergenic | 25.0% |
| !!! | CATACCCATGATTTTTTTTT+TGG | - | chr5_3:68744380-68744399 | Msa0827470:intron | 25.0% |
| ! | CTGACCAAAAAAAAAATCAT+GGG | + | chr5_3:68744387-68744406 | None:intergenic | 25.0% |
| ! | CATTGTAACCATCTTTAAAT+CGG | + | chr5_3:68744451-68744470 | None:intergenic | 25.0% |
| ! | TTACTAGAAAAAAAGGGAAT+TGG | + | chr5_3:68744530-68744549 | None:intergenic | 25.0% |
| !!! | AAAATGTCCCAATTTTTTTC+TGG | - | chr5_3:68744553-68744572 | Msa0827470:intron | 25.0% |
| ! | AAGAAGACCAGAAAAAAATT+GGG | + | chr5_3:68744563-68744582 | None:intergenic | 25.0% |
| ! | ACTTTAAATGCAGAATTTAG+AGG | + | chr5_3:68744662-68744681 | None:intergenic | 25.0% |
| ! | ATGAATTTGGGAAATTGATT+TGG | - | chr5_3:68744845-68744864 | Msa0827470:intron | 25.0% |
| ! | TCTAAATAAAAAACTGTGTG+AGG | + | chr5_3:68744882-68744901 | None:intergenic | 25.0% |
| !!! | CACAGTTTTTTATTTAGACT+CGG | - | chr5_3:68744884-68744903 | Msa0827470:intron | 25.0% |
| ! | GACAAAATTAAGACAAAACA+TGG | + | chr5_3:68745144-68745163 | None:intergenic | 25.0% |
| !! | ATTAAGTCTCTATTTGAAAC+TGG | - | chr5_3:68745257-68745276 | Msa0827470:CDS | 25.0% |
| ! | AAGTAGGAAATTATTTGATG+AGG | - | chr5_3:68745382-68745401 | Msa0827470:CDS | 25.0% |
| ! | ATCCTTTATATTGTGAAATG+AGG | - | chr5_3:68745526-68745545 | Msa0827470:CDS | 25.0% |
| ! | TTATATTACAGAAGCGATTA+TGG | - | chr5_3:68745597-68745616 | Msa0827470:five_prime_UTR | 25.0% |
| ! | ATTAAACATAACTGCAAAAC+TGG | - | chr5_3:68745715-68745734 | Msa0827470:five_prime_UTR | 25.0% |
| ! | CATAAACAAACAAGAGTAAT+GGG | + | chr5_3:68745860-68745879 | None:intergenic | 25.0% |
| ! | TCATAAACAAACAAGAGTAA+TGG | + | chr5_3:68745861-68745880 | None:intergenic | 25.0% |
| !! | TCTGTTGTTGTTTATGTAGT+TGG | + | chr5_3:68743319-68743338 | None:intergenic | 30.0% |
| AGGATTTGAAAGAAAGAAGT+TGG | + | chr5_3:68743346-68743365 | None:intergenic | 30.0% | |
| AAAGAGTGAAATGAAATGTG+TGG | + | chr5_3:68743369-68743388 | None:intergenic | 30.0% | |
| !!! | GGAATTTTTTGTTTCTGTTG+AGG | + | chr5_3:68743436-68743455 | None:intergenic | 30.0% |
| TCAATGAAATCATCTTTACG+TGG | - | chr5_3:68743751-68743770 | Msa0827470:CDS | 30.0% | |
| ! | ATGAAAAGGGTATGTTGTTT+CGG | - | chr5_3:68743929-68743948 | Msa0827470:CDS | 30.0% |
| !! | CGGTTAAGATGATTTTGAAA+GGG | - | chr5_3:68744031-68744050 | Msa0827470:intron | 30.0% |
| !! | AGATGATTTTGAAAGGGTTT+AGG | - | chr5_3:68744037-68744056 | Msa0827470:intron | 30.0% |
| !! | GATGATTTTGAAAGGGTTTA+GGG | - | chr5_3:68744038-68744057 | Msa0827470:intron | 30.0% |
| ! | TGATGAAAGAGATGTTTCTA+TGG | - | chr5_3:68744068-68744087 | Msa0827470:intron | 30.0% |
| GAACAAAAAGAAAGAAGGTT+TGG | + | chr5_3:68744123-68744142 | None:intergenic | 30.0% | |
| TTACGATAGATATGTCAAAG+TGG | - | chr5_3:68744285-68744304 | Msa0827470:intron | 30.0% | |
| CCTGACCAAAAAAAAAATCA+TGG | + | chr5_3:68744388-68744407 | None:intergenic | 30.0% | |
| !!! | CCATGATTTTTTTTTTGGTC+AGG | - | chr5_3:68744385-68744404 | Msa0827470:intron | 30.0% |
| CAAGAAGACCAGAAAAAAAT+TGG | + | chr5_3:68744564-68744583 | None:intergenic | 30.0% | |
| !! | CGATTTGATTTTAGTAGACA+GGG | - | chr5_3:68744584-68744603 | Msa0827470:intron | 30.0% |
| !!! | AGGGTTTTAAATTGTTCTTG+TGG | - | chr5_3:68744603-68744622 | Msa0827470:intron | 30.0% |
| !! | GTTTTAAATTGTTCTTGTGG+TGG | - | chr5_3:68744606-68744625 | Msa0827470:intron | 30.0% |
| ATTGGGCAAAATCAATATGT+GGG | + | chr5_3:68744723-68744742 | None:intergenic | 30.0% | |
| AATTGGGCAAAATCAATATG+TGG | + | chr5_3:68744724-68744743 | None:intergenic | 30.0% | |
| TCTGATATCAAATTAACAGC+AGG | - | chr5_3:68744959-68744978 | Msa0827470:intron | 30.0% | |
| TTAAGACAAAACATGGACAT+AGG | + | chr5_3:68745137-68745156 | None:intergenic | 30.0% | |
| TTGAAACTGGTGAATTGAAA+AGG | - | chr5_3:68745270-68745289 | Msa0827470:CDS | 30.0% | |
| GAATTGAAAAGGATTCTTGA+AGG | - | chr5_3:68745281-68745300 | Msa0827470:CDS | 30.0% | |
| AAATTATTTGATGAGGACGA+AGG | - | chr5_3:68745389-68745408 | Msa0827470:CDS | 30.0% | |
| AATTATTTGATGAGGACGAA+GGG | - | chr5_3:68745390-68745409 | Msa0827470:CDS | 30.0% | |
| TGCCTCATTTCACAATATAA+AGG | + | chr5_3:68745531-68745550 | None:intergenic | 30.0% | |
| ACAAAACAAAACGATGTTCA+AGG | + | chr5_3:68745665-68745684 | None:intergenic | 30.0% | |
| ! | CATTCAACGAATTTCTAGAC+CGG | - | chr5_3:68743692-68743711 | Msa0827470:CDS | 35.0% |
| ! | GTAGAATTTGCTTAACGAAC+CGG | + | chr5_3:68743719-68743738 | None:intergenic | 35.0% |
| GGTTCGTTAAGCAAATTCTA+CGG | - | chr5_3:68743718-68743737 | Msa0827470:CDS | 35.0% | |
| AAGCAAATTCTACGGTTCAA+TGG | - | chr5_3:68743726-68743745 | Msa0827470:CDS | 35.0% | |
| ATCATCTTTACGTGGAAGAA+TGG | - | chr5_3:68743759-68743778 | Msa0827470:CDS | 35.0% | |
| TGTATTTGACGAGTTTGAGA+GGG | - | chr5_3:68743980-68743999 | Msa0827470:CDS | 35.0% | |
| AACGTTTGAGGATTGTAATG+CGG | - | chr5_3:68744011-68744030 | Msa0827470:intron | 35.0% | |
| ! | GCGGTTAAGATGATTTTGAA+AGG | - | chr5_3:68744030-68744049 | Msa0827470:intron | 35.0% |
| !! | TTTTGAAAGGGTTTAGGGTT+TGG | - | chr5_3:68744043-68744062 | Msa0827470:intron | 35.0% |
| ! | TTTGAAAGGGTTTAGGGTTT+GGG | - | chr5_3:68744044-68744063 | Msa0827470:intron | 35.0% |
| TGCTTTCAGAAAAGAATTGC+AGG | - | chr5_3:68744095-68744114 | Msa0827470:intron | 35.0% | |
| ACATGCATCAAGAAAATCGA+GGG | + | chr5_3:68744259-68744278 | None:intergenic | 35.0% | |
| AACATGCATCAAGAAAATCG+AGG | + | chr5_3:68744260-68744279 | None:intergenic | 35.0% | |
| !! | GCGATTTGATTTTAGTAGAC+AGG | - | chr5_3:68744583-68744602 | Msa0827470:intron | 35.0% |
| ! | AACCTTGAGTTGTCTAATCT+TGG | - | chr5_3:68744763-68744782 | Msa0827470:intron | 35.0% |
| AAAAATTCGCTGCAACTGTA+TGG | + | chr5_3:68744995-68745014 | None:intergenic | 35.0% | |
| ! | TTCGTTAGAGGAAAGTACAT+TGG | - | chr5_3:68745221-68745240 | Msa0827470:CDS | 35.0% |
| TTCTGTGAGTATGAAAACGA+GGG | - | chr5_3:68745488-68745507 | Msa0827470:CDS | 35.0% | |
| !!! | CTGTCATGGTTTTAAATTCC+AGG | + | chr5_3:68745629-68745648 | None:intergenic | 35.0% |
| ! | GGAATTTAAAACCATGACAG+TGG | - | chr5_3:68745629-68745648 | Msa0827470:five_prime_UTR | 35.0% |
| TCAGAGAATAGGAGGAAAAA+GGG | + | chr5_3:68745828-68745847 | None:intergenic | 35.0% | |
| ATCAGAGAATAGGAGGAAAA+AGG | + | chr5_3:68745829-68745848 | None:intergenic | 35.0% | |
| GAGTGAAATGAAATGTGTGG+AGG | + | chr5_3:68743366-68743385 | None:intergenic | 40.0% | |
| !! | CGAATTTTTCGAAGATGTCG+AGG | - | chr5_3:68743608-68743627 | Msa0827470:three_prime_UTR | 40.0% |
| CGGTCTAGAAATTCGTTGAA+TGG | + | chr5_3:68743694-68743713 | None:intergenic | 40.0% | |
| ! | TGGTTCGGAAGAAGATGAAA+AGG | - | chr5_3:68743915-68743934 | Msa0827470:CDS | 40.0% |
| GGTTCGGAAGAAGATGAAAA+GGG | - | chr5_3:68743916-68743935 | Msa0827470:CDS | 40.0% | |
| !! | AAAGGGTATGTTGTTTCGGT+TGG | - | chr5_3:68743933-68743952 | Msa0827470:CDS | 40.0% |
| GTGTATTTGACGAGTTTGAG+AGG | - | chr5_3:68743979-68743998 | Msa0827470:CDS | 40.0% | |
| AGGGATAAGAAGAACGTTTG+AGG | - | chr5_3:68743999-68744018 | Msa0827470:intron | 40.0% | |
| ATGTCAGAGTCATCGTGATT+CGG | - | chr5_3:68744195-68744214 | Msa0827470:intron | 40.0% | |
| ! | CTGCATTTAAAGTTGTCACG+AGG | - | chr5_3:68744669-68744688 | Msa0827470:intron | 40.0% |
| GACCAAGATTAGACAACTCA+AGG | + | chr5_3:68744768-68744787 | None:intergenic | 40.0% | |
| TTTCCTCTAACGAACACTTG+AGG | + | chr5_3:68745215-68745234 | None:intergenic | 40.0% | |
| ! | GTTAGAGGAAAGTACATTGG+TGG | - | chr5_3:68745224-68745243 | Msa0827470:CDS | 40.0% |
| ATACCTTGTGAGAATTGCAG+TGG | - | chr5_3:68745359-68745378 | Msa0827470:CDS | 40.0% | |
| AGGGTTGTTGAAAAGATGCT+TGG | - | chr5_3:68745409-68745428 | Msa0827470:CDS | 40.0% | |
| ! | GCAATGAGAATGGACTTGTA+AGG | - | chr5_3:68745435-68745454 | Msa0827470:CDS | 40.0% |
| ACAGAACATCATTCCAGAAC+AGG | + | chr5_3:68745474-68745493 | None:intergenic | 40.0% | |
| GTTCTGTGAGTATGAAAACG+AGG | - | chr5_3:68745487-68745506 | Msa0827470:CDS | 40.0% | |
| ACACAACATCAGAGAATAGG+AGG | + | chr5_3:68745836-68745855 | None:intergenic | 40.0% | |
| GGAACACAACATCAGAGAAT+AGG | + | chr5_3:68745839-68745858 | None:intergenic | 40.0% | |
| ACGTGTGCATCGTGTTTGAT+CGG | + | chr5_3:68743648-68743667 | None:intergenic | 45.0% | |
| ! | AACGAATTTCTAGACCGGTC+CGG | - | chr5_3:68743697-68743716 | Msa0827470:CDS | 45.0% |
| ATTTGCTTAACGAACCGGAC+CGG | + | chr5_3:68743714-68743733 | None:intergenic | 45.0% | |
| AAGTTGTCACGAGGTCTTGA+TGG | - | chr5_3:68744678-68744697 | Msa0827470:intron | 45.0% | |
| TCGCTGCAACTGTATGGATA+TGG | + | chr5_3:68744989-68745008 | None:intergenic | 45.0% | |
| ATTGTTGCTGCAGTCTGTGA+TGG | - | chr5_3:68745169-68745188 | Msa0827470:CDS | 45.0% | |
| TTGTTGCTGCAGTCTGTGAT+GGG | - | chr5_3:68745170-68745189 | Msa0827470:CDS | 45.0% | |
| ACAAAGCCAGGCTTCATCTT+GGG | + | chr5_3:68745311-68745330 | None:intergenic | 45.0% | |
| AACAAAGCCAGGCTTCATCT+TGG | + | chr5_3:68745312-68745331 | None:intergenic | 45.0% | |
| CTTCCACTGCAATTCTCACA+AGG | + | chr5_3:68745365-68745384 | None:intergenic | 45.0% | |
| GTGAGAATTGCAGTGGAAGT+AGG | - | chr5_3:68745366-68745385 | Msa0827470:CDS | 45.0% | |
| TGCTTGGAGTGCAATGAGAA+TGG | - | chr5_3:68745425-68745444 | Msa0827470:CDS | 45.0% | |
| ! | TCTTTTGTCGTCGTCGTCGT+TGG | + | chr5_3:68743814-68743833 | None:intergenic | 50.0% |
| TCTTCTTCCGAACCAGAACG+CGG | + | chr5_3:68743910-68743929 | None:intergenic | 50.0% | |
| !! | GGGTATGTTGTTTCGGTTGG+CGG | - | chr5_3:68743936-68743955 | Msa0827470:CDS | 50.0% |
| GGATGCTGATGATCGGATTG+TGG | - | chr5_3:68743957-68743976 | Msa0827470:CDS | 50.0% | |
| CTGCCTCAAGTGTTCGTTAG+AGG | - | chr5_3:68745209-68745228 | Msa0827470:CDS | 50.0% | |
| ! | GGTTTTCCCAAGATGAAGCC+TGG | - | chr5_3:68745302-68745321 | Msa0827470:CDS | 50.0% |
| CAACTCTCGCAAACAAAGCC+AGG | + | chr5_3:68745323-68745342 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGAGTTG+TGG | - | chr5_3:68745323-68745342 | Msa0827470:CDS | 50.0% |
| ATTCCAGAACAGGCGCAACA+AGG | + | chr5_3:68745464-68745483 | None:intergenic | 50.0% | |
| AAGCGATTATGGTTGCAGCC+TGG | - | chr5_3:68745608-68745627 | Msa0827470:five_prime_UTR | 50.0% | |
| GCGCAAAAACACCACTGTCA+TGG | + | chr5_3:68745643-68745662 | None:intergenic | 50.0% | |
| ACCTTCTTCCGAACCACGTG+CGG | - | chr5_3:68743864-68743883 | Msa0827470:CDS | 55.0% | |
| TTAGGTCAGAAGCCGCGTTC+TGG | - | chr5_3:68743895-68743914 | Msa0827470:CDS | 55.0% | |
| ! | TCAGAAGCCGCGTTCTGGTT+CGG | - | chr5_3:68743900-68743919 | Msa0827470:CDS | 55.0% |
| ! | GGTTGGCGGATGCTGATGAT+CGG | - | chr5_3:68743950-68743969 | Msa0827470:CDS | 55.0% |
| TGTCCTTGTTGCGCCTGTTC+TGG | - | chr5_3:68745458-68745477 | Msa0827470:CDS | 55.0% | |
| CTTCGAAGCCGCACGTGGTT+CGG | + | chr5_3:68743875-68743894 | None:intergenic | 60.0% | |
| CCTAACTTCGAAGCCGCACG+TGG | + | chr5_3:68743880-68743899 | None:intergenic | 60.0% | |
| CCACGTGCGGCTTCGAAGTT+AGG | - | chr5_3:68743877-68743896 | Msa0827470:CDS | 60.0% | |
| !! | GCTGCAGTCTGTGATGGGTG+AGG | - | chr5_3:68745175-68745194 | Msa0827470:CDS | 60.0% |
| GCGAGAGTTGTGGCGATGCT+AGG | - | chr5_3:68745333-68745352 | Msa0827470:CDS | 60.0% | |
| ! | GCCGCACGTGGTTCGGAAGA+AGG | + | chr5_3:68743868-68743887 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 68743308 | 68745888 | 68743308 | ID=Msa0827470;Name=Msa0827470 |
| chr5_3 | mRNA | 68743308 | 68745888 | 68743308 | ID=Msa0827470-mRNA-1;Parent=Msa0827470;Name=Msa0827470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=314|1|1|1|1|1|2|347|284 |
| chr5_3 | exon | 68743308 | 68744014 | 68743308 | ID=Msa0827470-mRNA-1:exon:21604;Parent=Msa0827470-mRNA-1 |
| chr5_3 | exon | 68745080 | 68745888 | 68745080 | ID=Msa0827470-mRNA-1:exon:21603;Parent=Msa0827470-mRNA-1 |
| chr5_3 | five_prime_UTR | 68745575 | 68745888 | 68745575 | ID=Msa0827470-mRNA-1:five_prime_utr;Parent=Msa0827470-mRNA-1 |
| chr5_3 | CDS | 68745080 | 68745574 | 68745080 | ID=Msa0827470-mRNA-1:cds;Parent=Msa0827470-mRNA-1 |
| chr5_3 | CDS | 68743655 | 68744014 | 68743655 | ID=Msa0827470-mRNA-1:cds;Parent=Msa0827470-mRNA-1 |
| chr5_3 | three_prime_UTR | 68743308 | 68743654 | 68743308 | ID=Msa0827470-mRNA-1:three_prime_utr;Parent=Msa0827470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
