AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072530 MtrunA17_Chr7g0254951 92.727 220 13 1 20 236 1 220 7.95e-138 387
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072530 AT3G56820.1 54.673 214 75 5 49 245 12 220 1.32e-70 216
Msa1072530 AT3G56820.3 50.935 214 67 6 49 245 12 204 2.83e-59 186
Msa1072530 AT3G56820.2 50.340 147 53 3 49 178 12 155 4.39e-38 131

Find 97 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTAAGTTGTTCTCTTTAT+AGG 0.149046 7_2:-69664940 Msa1072530:exon
GCACTTTCTTCCAGCATTTC+AGG 0.170527 7_2:-69666627 Msa1072530:CDS
TTTATGCCTTAGTCTATTAA+AGG 0.217854 7_2:-69664723 Msa1072530:three_prime_UTR
GGGTGCTGCTATCAAGTTTA+GGG 0.274684 7_2:-69666502 Msa1072530:intron
GTTCGGAGTGCTTACTTTAT+AGG 0.282848 7_2:-69665024 Msa1072530:CDS
GGGGTGCTGCTATCAAGTTT+AGG 0.298006 7_2:-69666503 Msa1072530:CDS
TAGCTCTAATGTCGTCGTTT+GGG 0.317927 7_2:+69666730 None:intergenic
AGGATGGTGGTATGTTGATT+TGG 0.324496 7_2:+69666916 None:intergenic
CAAGTACGGACTTTAATGTT+TGG 0.354005 7_2:-69664969 Msa1072530:CDS
CCATCTTCCTCTTCCTCGCT+TGG 0.355448 7_2:-69666800 Msa1072530:CDS
CTCTTCATCTCGGTGAAATT+CGG 0.355507 7_2:-69666584 Msa1072530:CDS
GTGGTGGTGGTGGTTCTCTC+TGG 0.360872 7_2:+69666999 None:intergenic
TTCCTTCCTTTAATAGACTA+AGG 0.372920 7_2:+69664717 None:intergenic
AACAGCGAGGTAACTGATAT+TGG 0.393984 7_2:-69665135 Msa1072530:CDS
TATAGTTTATGATACTATCT+TGG 0.398381 7_2:+69664998 None:intergenic
TTATTCATAGTTCCTGAACT+TGG 0.402934 7_2:-69664685 Msa1072530:three_prime_UTR
TTAGCTCTAATGTCGTCGTT+TGG 0.404910 7_2:+69666729 None:intergenic
TTTACAATCAGTCCAAGTTC+AGG 0.410876 7_2:+69664673 None:intergenic
GGAGAGAGTGAGGTCTTTGA+AGG 0.412613 7_2:+69666835 None:intergenic
GAAGAAAGTGCGAGAGCAAT+AGG 0.413504 7_2:+69666639 None:intergenic
CCGTTGAAACATGGCGGAAG+TGG 0.425519 7_2:+69666884 None:intergenic
TTATTATATAGACATCTAAA+AGG 0.426582 7_2:+69664824 None:intergenic
CATCTCGGTGAAATTCGGCC+TGG 0.431710 7_2:-69666579 Msa1072530:CDS
AACAGCTCCACCTGAAATGC+TGG 0.433121 7_2:+69666617 None:intergenic
ATCTCGGTGAAATTCGGCCT+GGG 0.434068 7_2:-69666578 Msa1072530:CDS
GGAAGATGGAGAGGACGAAA+GGG 0.435556 7_2:+69666814 None:intergenic
AGGAAGATGGAGAGGACGAA+AGG 0.436973 7_2:+69666813 None:intergenic
CCACGATTATCCTTGGCAAT+AGG 0.438610 7_2:+69666675 None:intergenic
GTAAATAGGCAACGCAGATT+AGG 0.445935 7_2:+69664597 None:intergenic
GGCGGAAGTGGAGGAGGAGG+AGG 0.445946 7_2:+69666896 None:intergenic
GGTGGTATGTTGATTTGGAT+TGG 0.448511 7_2:+69666921 None:intergenic
GGAATGAGGTGACGAGGGAG+GGG 0.455393 7_2:+69666856 None:intergenic
TGGTCTTCGCGGTGTTGCGC+CGG 0.462910 7_2:+69666941 None:intergenic
GAGAGATCCAAGCGAGGAAG+AGG 0.466239 7_2:+69666793 None:intergenic
TGACATTGCGTTGCTGCTAC+TGG 0.469672 7_2:+69666971 None:intergenic
TTTGGGGAAGAGAGAGGGAG+TGG 0.476012 7_2:+69666747 None:intergenic
GCTGCTACTGGTGGTGGTGG+TGG 0.477279 7_2:+69666983 None:intergenic
CATGGCGGAAGTGGAGGAGG+AGG 0.480351 7_2:+69666893 None:intergenic
AAAAGAAAGACGGAATGAAA+GGG 0.482053 7_2:-69664753 Msa1072530:three_prime_UTR
ACTTGTGCTTCTCTTCATCT+CGG 0.490984 7_2:-69666594 Msa1072530:CDS
AGGAATGAGGTGACGAGGGA+GGG 0.496689 7_2:+69666855 None:intergenic
AAAGCATGTGCAGTATGAGC+AGG 0.498771 7_2:+69665063 None:intergenic
CCAAGCGAGGAAGAGGAAGA+TGG 0.501259 7_2:+69666800 None:intergenic
TAGTGAACATAGATCCGGTT+CGG 0.501356 7_2:-69665041 Msa1072530:CDS
TTAGTCTATTAAAGGAAGGA+AGG 0.509234 7_2:-69664715 Msa1072530:three_prime_UTR
TGCGTTGCTGCTACTGGTGG+TGG 0.511327 7_2:+69666977 None:intergenic
ATAAAGTAAGCACTCCGAAC+CGG 0.512043 7_2:+69665027 None:intergenic
TGCTTTAGTGAACATAGATC+CGG 0.514575 7_2:-69665046 Msa1072530:CDS
CTTTCCTTCTCCTATTGCCA+AGG 0.517574 7_2:-69666685 Msa1072530:CDS
TGATTTCCTCTCAACTTCCC+AGG 0.521431 7_2:+69666561 None:intergenic
GTGAGGTCTTTGAAGGAATG+AGG 0.525795 7_2:+69666842 None:intergenic
AAACATGGCGGAAGTGGAGG+AGG 0.531130 7_2:+69666890 None:intergenic
CCACTTCCGCCATGTTTCAA+CGG 0.538029 7_2:-69666884 Msa1072530:CDS
AATCCAACCACGATTATCCT+TGG 0.538228 7_2:+69666668 None:intergenic
AACGCAATGTCATCAACAGC+CGG 0.545074 7_2:-69666960 Msa1072530:CDS
AACATTAAAGTCCGTACTTG+AGG 0.548423 7_2:+69664972 None:intergenic
ATGAGGTGACGAGGGAGGGG+CGG 0.548655 7_2:+69666859 None:intergenic
AAACTATAATGCCTCAAGTA+CGG 0.551251 7_2:-69664983 Msa1072530:CDS
CTTTCTTCCAGCATTTCAGG+TGG 0.551639 7_2:-69666624 Msa1072530:CDS
TTCATCAAGAGGAATGTGAT+GGG 0.554812 7_2:+69664913 None:intergenic
GGCTATGCTGAGGTGACCAT+TGG 0.556044 7_2:-69665114 Msa1072530:CDS
AGCTCTAATGTCGTCGTTTG+GGG 0.556431 7_2:+69666731 None:intergenic
TGCCTTAGTCTATTAAAGGA+AGG 0.558946 7_2:-69664719 Msa1072530:three_prime_UTR
TTGAAACATGGCGGAAGTGG+AGG 0.573268 7_2:+69666887 None:intergenic
TTGCCAAGGATAATCGTGGT+TGG 0.573821 7_2:-69666671 Msa1072530:CDS
CGTCGTTTGGGGAAGAGAGA+GGG 0.576409 7_2:+69666742 None:intergenic
GGGGCGGATCCGTTGAAACA+TGG 0.576935 7_2:+69666875 None:intergenic
TTTCATCAAGAGGAATGTGA+TGG 0.579388 7_2:+69664912 None:intergenic
GGCAATAGGAGAAGGAAAGC+GGG 0.581159 7_2:+69666689 None:intergenic
AAGGAATGAGGTGACGAGGG+AGG 0.581491 7_2:+69666854 None:intergenic
CGAGGAAGAGGAAGATGGAG+AGG 0.582911 7_2:+69666805 None:intergenic
AGGACGAAAGGGAGAGAGTG+AGG 0.583353 7_2:+69666825 None:intergenic
AACAACCTCATCTCTGCCAA+TGG 0.586486 7_2:+69665098 None:intergenic
TAGTCTATTAAAGGAAGGAA+GGG 0.588168 7_2:-69664714 Msa1072530:three_prime_UTR
AACTTGGACTGATTGTAAAG+AGG 0.588411 7_2:-69664669 Msa1072530:three_prime_UTR
AAGAGTAAAGAATACACTAT+CGG 0.589376 7_2:-69667043 Msa1072530:five_prime_UTR
TTATCCTTGGCAATAGGAGA+AGG 0.589934 7_2:+69666681 None:intergenic
ACATCTTAGATTTCATCAAG+AGG 0.594395 7_2:+69664902 None:intergenic
TTGATTTGGATTGGTCTTCG+CGG 0.598960 7_2:+69666930 None:intergenic
GTTGCTGCTACTGGTGGTGG+TGG 0.603371 7_2:+69666980 None:intergenic
TCGTCGTTTGGGGAAGAGAG+AGG 0.610938 7_2:+69666741 None:intergenic
AAAGAAAGACGGAATGAAAG+GGG 0.614950 7_2:-69664752 Msa1072530:three_prime_UTR
ATTCGGCCTGGGAAGTTGAG+AGG 0.620512 7_2:-69666567 Msa1072530:CDS
GATGAGAAGAGCGATATGAA+CGG 0.633747 7_2:+69666769 None:intergenic
CCTATTGCCAAGGATAATCG+TGG 0.641137 7_2:-69666675 Msa1072530:CDS
AAGCATGTGCAGTATGAGCA+GGG 0.642060 7_2:+69665064 None:intergenic
TGGCAATAGGAGAAGGAAAG+CGG 0.647675 7_2:+69666688 None:intergenic
TTTGAAGGAATGAGGTGACG+AGG 0.649908 7_2:+69666850 None:intergenic
TTGAAGGAATGAGGTGACGA+GGG 0.664590 7_2:+69666851 None:intergenic
TCATCAAGAGGAATGTGATG+GGG 0.666815 7_2:+69664914 None:intergenic
CATTGCGTTGCTGCTACTGG+TGG 0.668867 7_2:+69666974 None:intergenic
AACTGATATTGGCTATGCTG+AGG 0.679963 7_2:-69665124 Msa1072530:CDS
AAGAAAGACGGAATGAAAGG+GGG 0.685351 7_2:-69664751 Msa1072530:three_prime_UTR
GGTGACCATTGGCAGAGATG+AGG 0.708921 7_2:-69665103 Msa1072530:CDS
AACGGAGAGAGATCCAAGCG+AGG 0.715907 7_2:+69666787 None:intergenic
GCGGATCCGTTGAAACATGG+CGG 0.736324 7_2:+69666878 None:intergenic
TTTGCAGGTGGAAAACAGCG+AGG 0.739005 7_2:-69665148 Msa1072530:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG + chr7_2:69664640-69664659 None:intergenic 0.0%
!!! TAATATTATTATGATTTTGT+TGG - chr7_2:69666861-69666880 Msa1072530:CDS 10.0%
!!! AAATATCAACTTAAGTTTTT+TGG - chr7_2:69666333-69666352 Msa1072530:intron 15.0%
!! TTATTATATAGACATCTAAA+AGG + chr7_2:69666909-69666928 None:intergenic 15.0%
!! AGATAAAATGCTAGTTATAT+TGG - chr7_2:69665315-69665334 Msa1072530:intron 20.0%
!! AACTATCAATTATACATCAA+TGG + chr7_2:69665412-69665431 None:intergenic 20.0%
!!! TATTTTGCAAACCAATTTTA+TGG - chr7_2:69665931-69665950 Msa1072530:intron 20.0%
!! AAAAGATTCTTCATTTCATT+GGG + chr7_2:69666510-69666529 None:intergenic 20.0%
!! AAAAAGATTCTTCATTTCAT+TGG + chr7_2:69666511-69666530 None:intergenic 20.0%
!! TATAGTTTATGATACTATCT+TGG + chr7_2:69666735-69666754 None:intergenic 20.0%
! AAGAGTAAAGAATACACTAT+CGG - chr7_2:69664687-69664706 Msa1072530:three_prime_UTR 25.0%
!! TAATGAGACTTTTGTTCTTT+GGG - chr7_2:69665207-69665226 Msa1072530:intron 25.0%
! ATTAATTTAAGAGAGAGGAA+AGG + chr7_2:69665262-69665281 None:intergenic 25.0%
! TCCTCTCTCTTAAATTAATT+TGG - chr7_2:69665263-69665282 Msa1072530:intron 25.0%
! ACCAAATTAATTTAAGAGAG+AGG + chr7_2:69665267-69665286 None:intergenic 25.0%
! TTTCAAAACCATGTTTGAAT+TGG + chr7_2:69665296-69665315 None:intergenic 25.0%
! TGAATGTTCGAATTAACATT+TGG - chr7_2:69665345-69665364 Msa1072530:intron 25.0%
! TAGTCCTTAACTATTATGTT+AGG - chr7_2:69665570-69665589 Msa1072530:intron 25.0%
! ACAACCTAACATAATAGTTA+AGG + chr7_2:69665577-69665596 None:intergenic 25.0%
! AGTAATAACTATAGTATACC+TGG + chr7_2:69665667-69665686 None:intergenic 25.0%
!!! GTTATTACTGAAAAAGTGTT+TGG - chr7_2:69665678-69665697 Msa1072530:intron 25.0%
! TAGCATCACTTTATATCATT+GGG + chr7_2:69665742-69665761 None:intergenic 25.0%
! TTAGCATCACTTTATATCAT+TGG + chr7_2:69665743-69665762 None:intergenic 25.0%
! AAGCAAACACTAAAAATGTT+TGG - chr7_2:69665904-69665923 Msa1072530:intron 25.0%
! CAAATATAAGTTTGCAAACT+AGG + chr7_2:69666129-69666148 None:intergenic 25.0%
! ATATTTAGTATGTACATGTG+TGG + chr7_2:69666319-69666338 None:intergenic 25.0%
!! TTTCATTGGGATTGTAATTT+TGG + chr7_2:69666497-69666516 None:intergenic 25.0%
!!! TGAAGAATCTTTTTTGTTGT+TGG - chr7_2:69666517-69666536 Msa1072530:CDS 25.0%
!!! CTTTAAGTTGTTCTCTTTAT+AGG - chr7_2:69666790-69666809 Msa1072530:CDS 25.0%
! TTTATGCCTTAGTCTATTAA+AGG - chr7_2:69667007-69667026 Msa1072530:CDS 25.0%
!! ACATTTTCAGAGTTTAACAA+GGG + chr7_2:69667109-69667128 None:intergenic 25.0%
! GTAATGAGACTTTTGTTCTT+TGG - chr7_2:69665206-69665225 Msa1072530:intron 30.0%
! AATGAGACTTTTGTTCTTTG+GGG - chr7_2:69665208-69665227 Msa1072530:intron 30.0%
TTGGTTCCTCTTATTCAATT+TGG - chr7_2:69665364-69665383 Msa1072530:intron 30.0%
TACACTCCAAATTGAATAAG+AGG + chr7_2:69665373-69665392 None:intergenic 30.0%
!!! GATTTTAACTTGTTGACTTG+TGG - chr7_2:69665598-69665617 Msa1072530:intron 30.0%
ATTGTGTTTGATGTTATACC+AGG - chr7_2:69665646-69665665 Msa1072530:intron 30.0%
CATTAATAGATCCTAGTTAC+AGG + chr7_2:69665812-69665831 None:intergenic 30.0%
AAGATGAAAATTACGCTCTA+TGG - chr7_2:69665855-69665874 Msa1072530:intron 30.0%
AATACTTATTGATCCAATGG+TGG + chr7_2:69666004-69666023 None:intergenic 30.0%
ACATATCACATTTGATCCAA+TGG + chr7_2:69666028-69666047 None:intergenic 30.0%
TTGCTATGCAAAATGAAGTT+GGG + chr7_2:69666153-69666172 None:intergenic 30.0%
TTAAAATGGAAACAAAGGGA+AGG + chr7_2:69666176-69666195 None:intergenic 30.0%
! CGGTTTAAAATGGAAACAAA+GGG + chr7_2:69666180-69666199 None:intergenic 30.0%
! TCGGTTTAAAATGGAAACAA+AGG + chr7_2:69666181-69666200 None:intergenic 30.0%
!!! TTGTTCAGTTGTTTGGTTTT+CGG + chr7_2:69666242-69666261 None:intergenic 30.0%
TGCTGTGTTAAAATAAGCTA+CGG - chr7_2:69666272-69666291 Msa1072530:intron 30.0%
!! CTCAAAATGATTAGCTTATG+CGG - chr7_2:69666432-69666451 Msa1072530:intron 30.0%
AAACTATAATGCCTCAAGTA+CGG - chr7_2:69666747-69666766 Msa1072530:CDS 30.0%
ACATCTTAGATTTCATCAAG+AGG + chr7_2:69666831-69666850 None:intergenic 30.0%
! ACTCAGTATGAGCATTTTAT+AGG - chr7_2:69666949-69666968 Msa1072530:CDS 30.0%
! CTCAGTATGAGCATTTTATA+GGG - chr7_2:69666950-69666969 Msa1072530:CDS 30.0%
ATAGGGTACAAAAAGAAAGA+CGG - chr7_2:69666967-69666986 Msa1072530:CDS 30.0%
AAAAAGAAAGACGGAATGAA+AGG - chr7_2:69666976-69666995 Msa1072530:CDS 30.0%
AAAAGAAAGACGGAATGAAA+GGG - chr7_2:69666977-69666996 Msa1072530:CDS 30.0%
TTCCTTCCTTTAATAGACTA+AGG + chr7_2:69667016-69667035 None:intergenic 30.0%
TTAGTCTATTAAAGGAAGGA+AGG - chr7_2:69667015-69667034 Msa1072530:exon 30.0%
TAGTCTATTAAAGGAAGGAA+GGG - chr7_2:69667016-69667035 Msa1072530:exon 30.0%
TTATTCATAGTTCCTGAACT+TGG - chr7_2:69667045-69667064 Msa1072530:five_prime_UTR 30.0%
! CACATTTTCAGAGTTTAACA+AGG + chr7_2:69667110-69667129 None:intergenic 30.0%
GTTCATTGCCAATTCAAACA+TGG - chr7_2:69665285-69665304 Msa1072530:intron 35.0%
! CATCAATGGTTGATATCATG+CGG + chr7_2:69665398-69665417 None:intergenic 35.0%
GATCAACCATGTTGACATAT+CGG - chr7_2:69665462-69665481 Msa1072530:intron 35.0%
ATTGAAAGAACCCTTCGTTA+AGG + chr7_2:69665532-69665551 None:intergenic 35.0%
CTCATGACATCATTCTTAGA+AGG - chr7_2:69665763-69665782 Msa1072530:intron 35.0%
TTTAGTGTTTGCTTGATCGT+AGG + chr7_2:69665898-69665917 None:intergenic 35.0%
TCACTTGTGCACCATAAAAT+TGG + chr7_2:69665945-69665964 None:intergenic 35.0%
GGCAATACTTATTGATCCAA+TGG + chr7_2:69666007-69666026 None:intergenic 35.0%
! GGATCAATAAGTATTGCCAT+TGG - chr7_2:69666009-69666028 Msa1072530:intron 35.0%
GTTGTGACTTATTGACCTAA+CGG - chr7_2:69666046-69666065 Msa1072530:intron 35.0%
!! CAAGTTTGTTTTCTACCGTT+AGG + chr7_2:69666064-69666083 None:intergenic 35.0%
GTAGAAAACAAACTTGTGCA+TGG - chr7_2:69666068-69666087 Msa1072530:intron 35.0%
GTTGCTATGCAAAATGAAGT+TGG + chr7_2:69666154-69666173 None:intergenic 35.0%
CCTTCAAACTCGGTTTAAAA+TGG + chr7_2:69666190-69666209 None:intergenic 35.0%
! CCATTTTAAACCGAGTTTGA+AGG - chr7_2:69666187-69666206 Msa1072530:intron 35.0%
CTAACTCTTGTTCAGTTGTT+TGG + chr7_2:69666249-69666268 None:intergenic 35.0%
GCTGTGTTAAAATAAGCTAC+GGG - chr7_2:69666273-69666292 Msa1072530:intron 35.0%
CTGTGTTAAAATAAGCTACG+GGG - chr7_2:69666274-69666293 Msa1072530:intron 35.0%
TAGTATGTACATGTGTGGTT+GGG + chr7_2:69666314-69666333 None:intergenic 35.0%
TTAGTATGTACATGTGTGGT+TGG + chr7_2:69666315-69666334 None:intergenic 35.0%
TGCTTTAGTGAACATAGATC+CGG - chr7_2:69666684-69666703 Msa1072530:CDS 35.0%
AACATTAAAGTCCGTACTTG+AGG + chr7_2:69666761-69666780 None:intergenic 35.0%
CAAGTACGGACTTTAATGTT+TGG - chr7_2:69666761-69666780 Msa1072530:CDS 35.0%
TTCATCAAGAGGAATGTGAT+GGG + chr7_2:69666820-69666839 None:intergenic 35.0%
TTTCATCAAGAGGAATGTGA+TGG + chr7_2:69666821-69666840 None:intergenic 35.0%
AAAGAAAGACGGAATGAAAG+GGG - chr7_2:69666978-69666997 Msa1072530:CDS 35.0%
TGCCTTAGTCTATTAAAGGA+AGG - chr7_2:69667011-69667030 Msa1072530:CDS 35.0%
TTTACAATCAGTCCAAGTTC+AGG + chr7_2:69667060-69667079 None:intergenic 35.0%
AACTTGGACTGATTGTAAAG+AGG - chr7_2:69667061-69667080 Msa1072530:five_prime_UTR 35.0%
!! TTGATTTGGATTGGTCTTCG+CGG + chr7_2:69664803-69664822 None:intergenic 40.0%
!! GGTGGTATGTTGATTTGGAT+TGG + chr7_2:69664812-69664831 None:intergenic 40.0%
! AGGATGGTGGTATGTTGATT+TGG + chr7_2:69664817-69664836 None:intergenic 40.0%
GATGAGAAGAGCGATATGAA+CGG + chr7_2:69664964-69664983 None:intergenic 40.0%
!! TAGCTCTAATGTCGTCGTTT+GGG + chr7_2:69665003-69665022 None:intergenic 40.0%
!! TTAGCTCTAATGTCGTCGTT+TGG + chr7_2:69665004-69665023 None:intergenic 40.0%
TTATCCTTGGCAATAGGAGA+AGG + chr7_2:69665052-69665071 None:intergenic 40.0%
AATCCAACCACGATTATCCT+TGG + chr7_2:69665065-69665084 None:intergenic 40.0%
ACTTGTGCTTCTCTTCATCT+CGG - chr7_2:69665136-69665155 Msa1072530:CDS 40.0%
CTCTTCATCTCGGTGAAATT+CGG - chr7_2:69665146-69665165 Msa1072530:intron 40.0%
ATGTCAACATGGTTGATCGT+CGG + chr7_2:69665460-69665479 None:intergenic 40.0%
CAATGACCGATATGTCAACA+TGG + chr7_2:69665471-69665490 None:intergenic 40.0%
ATGAGCCAAATCCTTAACGA+AGG - chr7_2:69665518-69665537 Msa1072530:intron 40.0%
TGAGCCAAATCCTTAACGAA+GGG - chr7_2:69665519-69665538 Msa1072530:intron 40.0%
AGAACCCTTCGTTAAGGATT+TGG + chr7_2:69665526-69665545 None:intergenic 40.0%
TAAGGAGTTAAACATCCAGC+AGG + chr7_2:69665705-69665724 None:intergenic 40.0%
AGTTACAGGTAGCAGTTTAG+TGG + chr7_2:69665798-69665817 None:intergenic 40.0%
CTAAACTGCTACCTGTAACT+AGG - chr7_2:69665798-69665817 Msa1072530:intron 40.0%
! GAGCGTAATTTTCATCTTGC+TGG + chr7_2:69665853-69665872 None:intergenic 40.0%
CACTTGTTTGTTTCCACCAT+TGG - chr7_2:69665988-69666007 Msa1072530:intron 40.0%
CACATCATTGCCTTCAAACT+CGG + chr7_2:69666200-69666219 None:intergenic 40.0%
!!! TCAGTTGTTTGGTTTTCGGT+TGG + chr7_2:69666238-69666257 None:intergenic 40.0%
GTTCACAGTAATCTGTTTGC+AGG - chr7_2:69666567-69666586 Msa1072530:CDS 40.0%
AACAGCGAGGTAACTGATAT+TGG - chr7_2:69666595-69666614 Msa1072530:CDS 40.0%
! AACTGATATTGGCTATGCTG+AGG - chr7_2:69666606-69666625 Msa1072530:CDS 40.0%
TAGTGAACATAGATCCGGTT+CGG - chr7_2:69666689-69666708 Msa1072530:CDS 40.0%
ATAAAGTAAGCACTCCGAAC+CGG + chr7_2:69666706-69666725 None:intergenic 40.0%
! GTTCGGAGTGCTTACTTTAT+AGG - chr7_2:69666706-69666725 Msa1072530:CDS 40.0%
TCATCAAGAGGAATGTGATG+GGG + chr7_2:69666819-69666838 None:intergenic 40.0%
AAGAAAGACGGAATGAAAGG+GGG - chr7_2:69666979-69666998 Msa1072530:CDS 40.0%
AACGCAATGTCATCAACAGC+CGG - chr7_2:69664770-69664789 Msa1072530:three_prime_UTR 45.0%
TTGAAGGAATGAGGTGACGA+GGG + chr7_2:69664882-69664901 None:intergenic 45.0%
TTTGAAGGAATGAGGTGACG+AGG + chr7_2:69664883-69664902 None:intergenic 45.0%
! GTGAGGTCTTTGAAGGAATG+AGG + chr7_2:69664891-69664910 None:intergenic 45.0%
! AGCTCTAATGTCGTCGTTTG+GGG + chr7_2:69665002-69665021 None:intergenic 45.0%
TGGCAATAGGAGAAGGAAAG+CGG + chr7_2:69665045-69665064 None:intergenic 45.0%
CTTTCCTTCTCCTATTGCCA+AGG - chr7_2:69665045-69665064 Msa1072530:CDS 45.0%
CCACGATTATCCTTGGCAAT+AGG + chr7_2:69665058-69665077 None:intergenic 45.0%
CCTATTGCCAAGGATAATCG+TGG - chr7_2:69665055-69665074 Msa1072530:CDS 45.0%
TTGCCAAGGATAATCGTGGT+TGG - chr7_2:69665059-69665078 Msa1072530:CDS 45.0%
! GAAGAAAGTGCGAGAGCAAT+AGG + chr7_2:69665094-69665113 None:intergenic 45.0%
GCACTTTCTTCCAGCATTTC+AGG - chr7_2:69665103-69665122 Msa1072530:CDS 45.0%
CTTTCTTCCAGCATTTCAGG+TGG - chr7_2:69665106-69665125 Msa1072530:CDS 45.0%
TGATTTCCTCTCAACTTCCC+AGG + chr7_2:69665172-69665191 None:intergenic 45.0%
!! GGGTGCTGCTATCAAGTTTA+GGG - chr7_2:69665228-69665247 Msa1072530:intron 45.0%
!! GAAAAAGTGTTTGGTCCTGC+TGG - chr7_2:69665687-69665706 Msa1072530:intron 45.0%
GAAACAAACAAGTGCGTGCA+TGG + chr7_2:69665982-69666001 None:intergenic 45.0%
CGAGTTTGAAGGCAATGATG+TGG - chr7_2:69666198-69666217 Msa1072530:intron 45.0%
ATAAGCTACGGGGTTCTCAA+CGG - chr7_2:69666284-69666303 Msa1072530:intron 45.0%
!! GATTAGCTTATGCGGTCTGT+AGG - chr7_2:69666440-69666459 Msa1072530:intron 45.0%
TGCGGTCTGTAGGCAAAATT+TGG - chr7_2:69666450-69666469 Msa1072530:intron 45.0%
GCGGTCTGTAGGCAAAATTT+GGG - chr7_2:69666451-69666470 Msa1072530:intron 45.0%
CACAGTAATCTGTTTGCAGG+TGG - chr7_2:69666570-69666589 Msa1072530:CDS 45.0%
AACAACCTCATCTCTGCCAA+TGG + chr7_2:69666635-69666654 None:intergenic 45.0%
AAGCATGTGCAGTATGAGCA+GGG + chr7_2:69666669-69666688 None:intergenic 45.0%
AAAGCATGTGCAGTATGAGC+AGG + chr7_2:69666670-69666689 None:intergenic 45.0%
TGACATTGCGTTGCTGCTAC+TGG + chr7_2:69664762-69664781 None:intergenic 50.0%
! TTGAAACATGGCGGAAGTGG+AGG + chr7_2:69664846-69664865 None:intergenic 50.0%
CCACTTCCGCCATGTTTCAA+CGG - chr7_2:69664846-69664865 Msa1072530:three_prime_UTR 50.0%
GGAGAGAGTGAGGTCTTTGA+AGG + chr7_2:69664898-69664917 None:intergenic 50.0%
GGAAGATGGAGAGGACGAAA+GGG + chr7_2:69664919-69664938 None:intergenic 50.0%
AGGAAGATGGAGAGGACGAA+AGG + chr7_2:69664920-69664939 None:intergenic 50.0%
GGCAATAGGAGAAGGAAAGC+GGG + chr7_2:69665044-69665063 None:intergenic 50.0%
AACAGCTCCACCTGAAATGC+TGG + chr7_2:69665116-69665135 None:intergenic 50.0%
ATCTCGGTGAAATTCGGCCT+GGG - chr7_2:69665152-69665171 Msa1072530:intron 50.0%
!! GGGGTGCTGCTATCAAGTTT+AGG - chr7_2:69665227-69665246 Msa1072530:intron 50.0%
TGGGTCATGCGCACAAGTTA+AGG + chr7_2:69665723-69665742 None:intergenic 50.0%
TTTGCAGGTGGAAAACAGCG+AGG - chr7_2:69666582-69666601 Msa1072530:CDS 50.0%
CATTGCGTTGCTGCTACTGG+TGG + chr7_2:69664759-69664778 None:intergenic 55.0%
! AAACATGGCGGAAGTGGAGG+AGG + chr7_2:69664843-69664862 None:intergenic 55.0%
! CCGTTGAAACATGGCGGAAG+TGG + chr7_2:69664849-69664868 None:intergenic 55.0%
GCGGATCCGTTGAAACATGG+CGG + chr7_2:69664855-69664874 None:intergenic 55.0%
AGGAATGAGGTGACGAGGGA+GGG + chr7_2:69664878-69664897 None:intergenic 55.0%
AAGGAATGAGGTGACGAGGG+AGG + chr7_2:69664879-69664898 None:intergenic 55.0%
AGGACGAAAGGGAGAGAGTG+AGG + chr7_2:69664908-69664927 None:intergenic 55.0%
CGAGGAAGAGGAAGATGGAG+AGG + chr7_2:69664928-69664947 None:intergenic 55.0%
CCAAGCGAGGAAGAGGAAGA+TGG + chr7_2:69664933-69664952 None:intergenic 55.0%
CCATCTTCCTCTTCCTCGCT+TGG - chr7_2:69664930-69664949 Msa1072530:three_prime_UTR 55.0%
GAGAGATCCAAGCGAGGAAG+AGG + chr7_2:69664940-69664959 None:intergenic 55.0%
AACGGAGAGAGATCCAAGCG+AGG + chr7_2:69664946-69664965 None:intergenic 55.0%
TTTGGGGAAGAGAGAGGGAG+TGG + chr7_2:69664986-69665005 None:intergenic 55.0%
CGTCGTTTGGGGAAGAGAGA+GGG + chr7_2:69664991-69665010 None:intergenic 55.0%
TCGTCGTTTGGGGAAGAGAG+AGG + chr7_2:69664992-69665011 None:intergenic 55.0%
CATCTCGGTGAAATTCGGCC+TGG - chr7_2:69665151-69665170 Msa1072530:intron 55.0%
ATTCGGCCTGGGAAGTTGAG+AGG - chr7_2:69665163-69665182 Msa1072530:intron 55.0%
GGCTATGCTGAGGTGACCAT+TGG - chr7_2:69666616-69666635 Msa1072530:CDS 55.0%
GGTGACCATTGGCAGAGATG+AGG - chr7_2:69666627-69666646 Msa1072530:CDS 55.0%
!! GTGGTGGTGGTGGTTCTCTC+TGG + chr7_2:69664734-69664753 None:intergenic 60.0%
!! GTTGCTGCTACTGGTGGTGG+TGG + chr7_2:69664753-69664772 None:intergenic 60.0%
TGCGTTGCTGCTACTGGTGG+TGG + chr7_2:69664756-69664775 None:intergenic 60.0%
GAAGTGGAGGAGGAGGAGGA+TGG + chr7_2:69664833-69664852 None:intergenic 60.0%
GGGGCGGATCCGTTGAAACA+TGG + chr7_2:69664858-69664877 None:intergenic 60.0%
GGAATGAGGTGACGAGGGAG+GGG + chr7_2:69664877-69664896 None:intergenic 60.0%
!! ACTGGTGGTGGTGGTGGTGG+TGG + chr7_2:69664744-69664763 None:intergenic 65.0%
!! GCTACTGGTGGTGGTGGTGG+TGG + chr7_2:69664747-69664766 None:intergenic 65.0%
!! GCTGCTACTGGTGGTGGTGG+TGG + chr7_2:69664750-69664769 None:intergenic 65.0%
!! TGGTCTTCGCGGTGTTGCGC+CGG + chr7_2:69664792-69664811 None:intergenic 65.0%
GTGGAGGAGGAGGAGGATGG+TGG + chr7_2:69664830-69664849 None:intergenic 65.0%
! CATGGCGGAAGTGGAGGAGG+AGG + chr7_2:69664840-69664859 None:intergenic 65.0%
ATGAGGTGACGAGGGAGGGG+CGG + chr7_2:69664874-69664893 None:intergenic 65.0%
GGCGGAAGTGGAGGAGGAGG+AGG + chr7_2:69664837-69664856 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 69664610 69667142 69664610 ID=Msa1072530;Name=Msa1072530
chr7_2 mRNA 69664610 69667142 69664610 ID=Msa1072530-mRNA-1;Parent=Msa1072530;Name=Msa1072530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=109|1|1|1|1|1|2|347|245
chr7_2 exon 69664610 69665163 69664610 ID=Msa1072530-mRNA-1:exon:15518;Parent=Msa1072530-mRNA-1
chr7_2 exon 69666503 69667142 69666503 ID=Msa1072530-mRNA-1:exon:15517;Parent=Msa1072530-mRNA-1
chr7_2 five_prime_UTR 69667034 69667142 69667034 ID=Msa1072530-mRNA-1:five_prime_utr;Parent=Msa1072530-mRNA-1
chr7_2 CDS 69666503 69667033 69666503 ID=Msa1072530-mRNA-1:cds;Parent=Msa1072530-mRNA-1
chr7_2 CDS 69664957 69665163 69664957 ID=Msa1072530-mRNA-1:cds;Parent=Msa1072530-mRNA-1
chr7_2 three_prime_UTR 69664610 69664956 69664610 ID=Msa1072530-mRNA-1:three_prime_utr;Parent=Msa1072530-mRNA-1
Gene Sequence

>Msa1072530

ATGAGAGTGCAACCAGAGAGAACCACCACCACCACCACCACCAGTAGCAGCAACGCAATGTCATCAACAGCCGGCGCAACACCGCGAAGACCAATCCAAATCAACATACCACCATCCTCCTCCTCCTCCACTTCCGCCATGTTTCAACGGATCCGCCCCTCCCTCGTCACCTCATTCCTTCAAAGACCTCACTCTCTCCCTTTCGTCCTCTCCATCTTCCTCTTCCTCGCTTGGATCTCTCTCCGTTCATATCGCTCTTCTCATCCACTCCCTCTCTCTTCCCCAAACGACGACATTAGAGCTAATCTTCGCAGATTCTCTTCCCGCTTTCCTTCTCCTATTGCCAAGGATAATCGTGGTTGGATTCTTGATCCTATTGCTCTCGCACTTTCTTCCAGCATTTCAGGTGGAGCTGTTACTTGTGCTTCTCTTCATCTCGGTGAAATTCGGCCTGGGAAGTTGAGAGGAAATCATAGACATCATGATTGTAATGAGACTTTTGTTCTTTGGGGTGCTGCTATCAAGTTTAGGGTGGAAAACAGCGAGGTAACTGATATTGGCTATGCTGAGGTGACCATTGGCAGAGATGAGGTTGTTGTTGCTGCTAGCCCTGCTCATACTGCACATGCTTTAGTGAACATAGATCCGGTTCGGAGTGCTTACTTTATAGGATGCCAAGATAGTATCATAAACTATAATGCCTCAAGTACGGACTTTAATGTTTGGAAAGATCTTTAA

Protein sequence

>Msa1072530

MRVQPERTTTTTTTSSSNAMSSTAGATPRRPIQINIPPSSSSSTSAMFQRIRPSLVTSFLQRPHSLPFVLSIFLFLAWISLRSYRSSHPLPLSSPNDDIRANLRRFSSRFPSPIAKDNRGWILDPIALALSSSISGGAVTCASLHLGEIRPGKLRGNHRHHDCNETFVLWGAAIKFRVENSEVTDIGYAEVTIGRDEVVVAASPAHTAHALVNIDPVRSAYFIGCQDSIINYNASSTDFNVWKDL*