Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1072530 | XP_004493283.1 | 86.475 | 244 | 32 | 1 | 2 | 245 | 5 | 247 | 5.18e-143 | 410 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1072530 | A0A1S2XSI5 | 86.475 | 244 | 32 | 1 | 2 | 245 | 5 | 247 | 2.48e-143 | 410 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000490 | Msa1072530 | 0.810536 | 1.097765e-50 | -8.615850e-47 |
Msa0000570 | Msa1072530 | 0.815481 | 9.044307e-52 | -8.615850e-47 |
Msa0038020 | Msa1072530 | -0.828331 | 9.540818e-55 | -8.615850e-47 |
Msa0085720 | Msa1072530 | -0.845758 | 3.324971e-59 | -8.615850e-47 |
Msa0108850 | Msa1072530 | -0.830049 | 3.655069e-55 | -8.615850e-47 |
Msa0120370 | Msa1072530 | 0.802550 | 5.319930e-49 | -8.615850e-47 |
Msa0612680 | Msa1072530 | 0.833810 | 4.306921e-56 | -8.615850e-47 |
Msa0626990 | Msa1072530 | -0.811377 | 7.216311e-51 | -8.615850e-47 |
Msa0627350 | Msa1072530 | -0.804361 | 2.240941e-49 | -8.615850e-47 |
Msa0653320 | Msa1072530 | 0.838563 | 2.670140e-57 | -8.615850e-47 |
Msa0679550 | Msa1072530 | -0.809321 | 2.005076e-50 | -8.615850e-47 |
Msa0798270 | Msa1072530 | 0.800715 | 1.265553e-48 | -8.615850e-47 |
Msa0124550 | Msa1072530 | -0.800124 | 1.669543e-48 | -8.615850e-47 |
Msa0140170 | Msa1072530 | -0.844830 | 5.929173e-59 | -8.615850e-47 |
Msa0151950 | Msa1072530 | -0.821549 | 3.806516e-53 | -8.615850e-47 |
Msa0193540 | Msa1072530 | -0.808725 | 2.689438e-50 | -8.615850e-47 |
Msa0208020 | Msa1072530 | -0.823245 | 1.536401e-53 | -8.615850e-47 |
Msa0233610 | Msa1072530 | -0.810478 | 1.129855e-50 | -8.615850e-47 |
Msa0370870 | Msa1072530 | -0.813618 | 2.336574e-51 | -8.615850e-47 |
Msa0388030 | Msa1072530 | 0.827223 | 1.761847e-54 | -8.615850e-47 |
Msa0394410 | Msa1072530 | 0.814161 | 1.773931e-51 | -8.615850e-47 |
Msa0404700 | Msa1072530 | -0.819360 | 1.209977e-52 | -8.615850e-47 |
Msa0417650 | Msa1072530 | -0.802658 | 5.052593e-49 | -8.615850e-47 |
Msa0431020 | Msa1072530 | -0.816171 | 6.345393e-52 | -8.615850e-47 |
Msa0462540 | Msa1072530 | -0.801115 | 1.048387e-48 | -8.615850e-47 |
Msa0464900 | Msa1072530 | -0.827798 | 1.281943e-54 | -8.615850e-47 |
Msa1048700 | Msa1072530 | -0.813895 | 2.030138e-51 | -8.615850e-47 |
Msa1070840 | Msa1072530 | -0.801132 | 1.040212e-48 | -8.615850e-47 |
Msa1072530 | Msa1130210 | 0.805597 | 1.236495e-49 | -8.615850e-47 |
Msa1072530 | Msa1130290 | 0.808833 | 2.549794e-50 | -8.615850e-47 |
Msa1072530 | Msa1130670 | 0.803628 | 3.183681e-49 | -8.615850e-47 |
Msa1072530 | Msa1133570 | -0.820092 | 8.234711e-53 | -8.615850e-47 |
Msa1072530 | Msa1135880 | -0.801131 | 1.040682e-48 | -8.615850e-47 |
Msa1072530 | Msa1158660 | -0.804778 | 1.834734e-49 | -8.615850e-47 |
Msa1072530 | Msa1161660 | 0.810649 | 1.037563e-50 | -8.615850e-47 |
Msa1072530 | Msa1207460 | 0.807904 | 4.024758e-50 | -8.615850e-47 |
Msa1072530 | Msa1229850 | -0.821234 | 4.499843e-53 | -8.615850e-47 |
Msa1072530 | Msa1272520 | -0.809145 | 2.186381e-50 | -8.615850e-47 |
Msa1072530 | Msa1280620 | -0.810207 | 1.292717e-50 | -8.615850e-47 |
Msa1072530 | Msa1300860 | -0.807491 | 4.926031e-50 | -8.615850e-47 |
Msa1072530 | Msa1314770 | -0.800046 | 1.731701e-48 | -8.615850e-47 |
Msa1072530 | Msa1396010 | 0.927093 | 1.899647e-91 | -8.615850e-47 |
Msa1072530 | Msa1400070 | -0.808029 | 3.786258e-50 | -8.615850e-47 |
Msa1072530 | Msa1415130 | -0.811042 | 8.532087e-51 | -8.615850e-47 |
Msa1072530 | Msa1422840 | -0.824835 | 6.509589e-54 | -8.615850e-47 |
Msa1072530 | Msa1445220 | -0.811041 | 8.535782e-51 | -8.615850e-47 |
Msa0239940 | Msa1072530 | -0.811633 | 6.349751e-51 | -8.615850e-47 |
Msa0274630 | Msa1072530 | -0.817526 | 3.150281e-52 | -8.615850e-47 |
Msa0279210 | Msa1072530 | 0.831652 | 1.478322e-55 | -8.615850e-47 |
Msa0279250 | Msa1072530 | 0.813953 | 1.971451e-51 | -8.615850e-47 |
Msa0289400 | Msa1072530 | -0.817983 | 2.484185e-52 | -8.615850e-47 |
Msa0312310 | Msa1072530 | -0.818312 | 2.093282e-52 | -8.615850e-47 |
Msa0314060 | Msa1072530 | -0.813071 | 3.080776e-51 | -8.615850e-47 |
Msa0318970 | Msa1072530 | 0.827262 | 1.724315e-54 | -8.615850e-47 |
Msa0362060 | Msa1072530 | -0.805185 | 1.508384e-49 | -8.615850e-47 |
Msa0363100 | Msa1072530 | -0.806509 | 7.945536e-50 | -8.615850e-47 |
Msa0363170 | Msa1072530 | -0.815594 | 8.533348e-52 | -8.615850e-47 |
Msa0519390 | Msa1072530 | -0.844540 | 7.096264e-59 | -8.615850e-47 |
Msa0557950 | Msa1072530 | 0.835267 | 1.853696e-56 | -8.615850e-47 |
Msa0573040 | Msa1072530 | -0.808915 | 2.449026e-50 | -8.615850e-47 |
Msa0587190 | Msa1072530 | -0.816807 | 4.571278e-52 | -8.615850e-47 |
Msa0845070 | Msa1072530 | -0.808554 | 2.925841e-50 | -8.615850e-47 |
Msa0944730 | Msa1072530 | -0.807030 | 6.168378e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1072530 | MtrunA17_Chr7g0254951 | 92.727 | 220 | 13 | 1 | 20 | 236 | 1 | 220 | 7.95e-138 | 387 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1072530 | AT3G56820.1 | 54.673 | 214 | 75 | 5 | 49 | 245 | 12 | 220 | 1.32e-70 | 216 |
Msa1072530 | AT3G56820.3 | 50.935 | 214 | 67 | 6 | 49 | 245 | 12 | 204 | 2.83e-59 | 186 |
Msa1072530 | AT3G56820.2 | 50.340 | 147 | 53 | 3 | 49 | 178 | 12 | 155 | 4.39e-38 | 131 |
Find 97 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTAAGTTGTTCTCTTTAT+AGG | 0.149046 | 7_2:-69664940 | Msa1072530:exon |
GCACTTTCTTCCAGCATTTC+AGG | 0.170527 | 7_2:-69666627 | Msa1072530:CDS |
TTTATGCCTTAGTCTATTAA+AGG | 0.217854 | 7_2:-69664723 | Msa1072530:three_prime_UTR |
GGGTGCTGCTATCAAGTTTA+GGG | 0.274684 | 7_2:-69666502 | Msa1072530:intron |
GTTCGGAGTGCTTACTTTAT+AGG | 0.282848 | 7_2:-69665024 | Msa1072530:CDS |
GGGGTGCTGCTATCAAGTTT+AGG | 0.298006 | 7_2:-69666503 | Msa1072530:CDS |
TAGCTCTAATGTCGTCGTTT+GGG | 0.317927 | 7_2:+69666730 | None:intergenic |
AGGATGGTGGTATGTTGATT+TGG | 0.324496 | 7_2:+69666916 | None:intergenic |
CAAGTACGGACTTTAATGTT+TGG | 0.354005 | 7_2:-69664969 | Msa1072530:CDS |
CCATCTTCCTCTTCCTCGCT+TGG | 0.355448 | 7_2:-69666800 | Msa1072530:CDS |
CTCTTCATCTCGGTGAAATT+CGG | 0.355507 | 7_2:-69666584 | Msa1072530:CDS |
GTGGTGGTGGTGGTTCTCTC+TGG | 0.360872 | 7_2:+69666999 | None:intergenic |
TTCCTTCCTTTAATAGACTA+AGG | 0.372920 | 7_2:+69664717 | None:intergenic |
AACAGCGAGGTAACTGATAT+TGG | 0.393984 | 7_2:-69665135 | Msa1072530:CDS |
TATAGTTTATGATACTATCT+TGG | 0.398381 | 7_2:+69664998 | None:intergenic |
TTATTCATAGTTCCTGAACT+TGG | 0.402934 | 7_2:-69664685 | Msa1072530:three_prime_UTR |
TTAGCTCTAATGTCGTCGTT+TGG | 0.404910 | 7_2:+69666729 | None:intergenic |
TTTACAATCAGTCCAAGTTC+AGG | 0.410876 | 7_2:+69664673 | None:intergenic |
GGAGAGAGTGAGGTCTTTGA+AGG | 0.412613 | 7_2:+69666835 | None:intergenic |
GAAGAAAGTGCGAGAGCAAT+AGG | 0.413504 | 7_2:+69666639 | None:intergenic |
CCGTTGAAACATGGCGGAAG+TGG | 0.425519 | 7_2:+69666884 | None:intergenic |
TTATTATATAGACATCTAAA+AGG | 0.426582 | 7_2:+69664824 | None:intergenic |
CATCTCGGTGAAATTCGGCC+TGG | 0.431710 | 7_2:-69666579 | Msa1072530:CDS |
AACAGCTCCACCTGAAATGC+TGG | 0.433121 | 7_2:+69666617 | None:intergenic |
ATCTCGGTGAAATTCGGCCT+GGG | 0.434068 | 7_2:-69666578 | Msa1072530:CDS |
GGAAGATGGAGAGGACGAAA+GGG | 0.435556 | 7_2:+69666814 | None:intergenic |
AGGAAGATGGAGAGGACGAA+AGG | 0.436973 | 7_2:+69666813 | None:intergenic |
CCACGATTATCCTTGGCAAT+AGG | 0.438610 | 7_2:+69666675 | None:intergenic |
GTAAATAGGCAACGCAGATT+AGG | 0.445935 | 7_2:+69664597 | None:intergenic |
GGCGGAAGTGGAGGAGGAGG+AGG | 0.445946 | 7_2:+69666896 | None:intergenic |
GGTGGTATGTTGATTTGGAT+TGG | 0.448511 | 7_2:+69666921 | None:intergenic |
GGAATGAGGTGACGAGGGAG+GGG | 0.455393 | 7_2:+69666856 | None:intergenic |
TGGTCTTCGCGGTGTTGCGC+CGG | 0.462910 | 7_2:+69666941 | None:intergenic |
GAGAGATCCAAGCGAGGAAG+AGG | 0.466239 | 7_2:+69666793 | None:intergenic |
TGACATTGCGTTGCTGCTAC+TGG | 0.469672 | 7_2:+69666971 | None:intergenic |
TTTGGGGAAGAGAGAGGGAG+TGG | 0.476012 | 7_2:+69666747 | None:intergenic |
GCTGCTACTGGTGGTGGTGG+TGG | 0.477279 | 7_2:+69666983 | None:intergenic |
CATGGCGGAAGTGGAGGAGG+AGG | 0.480351 | 7_2:+69666893 | None:intergenic |
AAAAGAAAGACGGAATGAAA+GGG | 0.482053 | 7_2:-69664753 | Msa1072530:three_prime_UTR |
ACTTGTGCTTCTCTTCATCT+CGG | 0.490984 | 7_2:-69666594 | Msa1072530:CDS |
AGGAATGAGGTGACGAGGGA+GGG | 0.496689 | 7_2:+69666855 | None:intergenic |
AAAGCATGTGCAGTATGAGC+AGG | 0.498771 | 7_2:+69665063 | None:intergenic |
CCAAGCGAGGAAGAGGAAGA+TGG | 0.501259 | 7_2:+69666800 | None:intergenic |
TAGTGAACATAGATCCGGTT+CGG | 0.501356 | 7_2:-69665041 | Msa1072530:CDS |
TTAGTCTATTAAAGGAAGGA+AGG | 0.509234 | 7_2:-69664715 | Msa1072530:three_prime_UTR |
TGCGTTGCTGCTACTGGTGG+TGG | 0.511327 | 7_2:+69666977 | None:intergenic |
ATAAAGTAAGCACTCCGAAC+CGG | 0.512043 | 7_2:+69665027 | None:intergenic |
TGCTTTAGTGAACATAGATC+CGG | 0.514575 | 7_2:-69665046 | Msa1072530:CDS |
CTTTCCTTCTCCTATTGCCA+AGG | 0.517574 | 7_2:-69666685 | Msa1072530:CDS |
TGATTTCCTCTCAACTTCCC+AGG | 0.521431 | 7_2:+69666561 | None:intergenic |
GTGAGGTCTTTGAAGGAATG+AGG | 0.525795 | 7_2:+69666842 | None:intergenic |
AAACATGGCGGAAGTGGAGG+AGG | 0.531130 | 7_2:+69666890 | None:intergenic |
CCACTTCCGCCATGTTTCAA+CGG | 0.538029 | 7_2:-69666884 | Msa1072530:CDS |
AATCCAACCACGATTATCCT+TGG | 0.538228 | 7_2:+69666668 | None:intergenic |
AACGCAATGTCATCAACAGC+CGG | 0.545074 | 7_2:-69666960 | Msa1072530:CDS |
AACATTAAAGTCCGTACTTG+AGG | 0.548423 | 7_2:+69664972 | None:intergenic |
ATGAGGTGACGAGGGAGGGG+CGG | 0.548655 | 7_2:+69666859 | None:intergenic |
AAACTATAATGCCTCAAGTA+CGG | 0.551251 | 7_2:-69664983 | Msa1072530:CDS |
CTTTCTTCCAGCATTTCAGG+TGG | 0.551639 | 7_2:-69666624 | Msa1072530:CDS |
TTCATCAAGAGGAATGTGAT+GGG | 0.554812 | 7_2:+69664913 | None:intergenic |
GGCTATGCTGAGGTGACCAT+TGG | 0.556044 | 7_2:-69665114 | Msa1072530:CDS |
AGCTCTAATGTCGTCGTTTG+GGG | 0.556431 | 7_2:+69666731 | None:intergenic |
TGCCTTAGTCTATTAAAGGA+AGG | 0.558946 | 7_2:-69664719 | Msa1072530:three_prime_UTR |
TTGAAACATGGCGGAAGTGG+AGG | 0.573268 | 7_2:+69666887 | None:intergenic |
TTGCCAAGGATAATCGTGGT+TGG | 0.573821 | 7_2:-69666671 | Msa1072530:CDS |
CGTCGTTTGGGGAAGAGAGA+GGG | 0.576409 | 7_2:+69666742 | None:intergenic |
GGGGCGGATCCGTTGAAACA+TGG | 0.576935 | 7_2:+69666875 | None:intergenic |
TTTCATCAAGAGGAATGTGA+TGG | 0.579388 | 7_2:+69664912 | None:intergenic |
GGCAATAGGAGAAGGAAAGC+GGG | 0.581159 | 7_2:+69666689 | None:intergenic |
AAGGAATGAGGTGACGAGGG+AGG | 0.581491 | 7_2:+69666854 | None:intergenic |
CGAGGAAGAGGAAGATGGAG+AGG | 0.582911 | 7_2:+69666805 | None:intergenic |
AGGACGAAAGGGAGAGAGTG+AGG | 0.583353 | 7_2:+69666825 | None:intergenic |
AACAACCTCATCTCTGCCAA+TGG | 0.586486 | 7_2:+69665098 | None:intergenic |
TAGTCTATTAAAGGAAGGAA+GGG | 0.588168 | 7_2:-69664714 | Msa1072530:three_prime_UTR |
AACTTGGACTGATTGTAAAG+AGG | 0.588411 | 7_2:-69664669 | Msa1072530:three_prime_UTR |
AAGAGTAAAGAATACACTAT+CGG | 0.589376 | 7_2:-69667043 | Msa1072530:five_prime_UTR |
TTATCCTTGGCAATAGGAGA+AGG | 0.589934 | 7_2:+69666681 | None:intergenic |
ACATCTTAGATTTCATCAAG+AGG | 0.594395 | 7_2:+69664902 | None:intergenic |
TTGATTTGGATTGGTCTTCG+CGG | 0.598960 | 7_2:+69666930 | None:intergenic |
GTTGCTGCTACTGGTGGTGG+TGG | 0.603371 | 7_2:+69666980 | None:intergenic |
TCGTCGTTTGGGGAAGAGAG+AGG | 0.610938 | 7_2:+69666741 | None:intergenic |
AAAGAAAGACGGAATGAAAG+GGG | 0.614950 | 7_2:-69664752 | Msa1072530:three_prime_UTR |
ATTCGGCCTGGGAAGTTGAG+AGG | 0.620512 | 7_2:-69666567 | Msa1072530:CDS |
GATGAGAAGAGCGATATGAA+CGG | 0.633747 | 7_2:+69666769 | None:intergenic |
CCTATTGCCAAGGATAATCG+TGG | 0.641137 | 7_2:-69666675 | Msa1072530:CDS |
AAGCATGTGCAGTATGAGCA+GGG | 0.642060 | 7_2:+69665064 | None:intergenic |
TGGCAATAGGAGAAGGAAAG+CGG | 0.647675 | 7_2:+69666688 | None:intergenic |
TTTGAAGGAATGAGGTGACG+AGG | 0.649908 | 7_2:+69666850 | None:intergenic |
TTGAAGGAATGAGGTGACGA+GGG | 0.664590 | 7_2:+69666851 | None:intergenic |
TCATCAAGAGGAATGTGATG+GGG | 0.666815 | 7_2:+69664914 | None:intergenic |
CATTGCGTTGCTGCTACTGG+TGG | 0.668867 | 7_2:+69666974 | None:intergenic |
AACTGATATTGGCTATGCTG+AGG | 0.679963 | 7_2:-69665124 | Msa1072530:CDS |
AAGAAAGACGGAATGAAAGG+GGG | 0.685351 | 7_2:-69664751 | Msa1072530:three_prime_UTR |
GGTGACCATTGGCAGAGATG+AGG | 0.708921 | 7_2:-69665103 | Msa1072530:CDS |
AACGGAGAGAGATCCAAGCG+AGG | 0.715907 | 7_2:+69666787 | None:intergenic |
GCGGATCCGTTGAAACATGG+CGG | 0.736324 | 7_2:+69666878 | None:intergenic |
TTTGCAGGTGGAAAACAGCG+AGG | 0.739005 | 7_2:-69665148 | Msa1072530:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTTTTTTT+TGG | + | chr7_2:69664640-69664659 | None:intergenic | 0.0% |
!!! | TAATATTATTATGATTTTGT+TGG | - | chr7_2:69666861-69666880 | Msa1072530:CDS | 10.0% |
!!! | AAATATCAACTTAAGTTTTT+TGG | - | chr7_2:69666333-69666352 | Msa1072530:intron | 15.0% |
!! | TTATTATATAGACATCTAAA+AGG | + | chr7_2:69666909-69666928 | None:intergenic | 15.0% |
!! | AGATAAAATGCTAGTTATAT+TGG | - | chr7_2:69665315-69665334 | Msa1072530:intron | 20.0% |
!! | AACTATCAATTATACATCAA+TGG | + | chr7_2:69665412-69665431 | None:intergenic | 20.0% |
!!! | TATTTTGCAAACCAATTTTA+TGG | - | chr7_2:69665931-69665950 | Msa1072530:intron | 20.0% |
!! | AAAAGATTCTTCATTTCATT+GGG | + | chr7_2:69666510-69666529 | None:intergenic | 20.0% |
!! | AAAAAGATTCTTCATTTCAT+TGG | + | chr7_2:69666511-69666530 | None:intergenic | 20.0% |
!! | TATAGTTTATGATACTATCT+TGG | + | chr7_2:69666735-69666754 | None:intergenic | 20.0% |
! | AAGAGTAAAGAATACACTAT+CGG | - | chr7_2:69664687-69664706 | Msa1072530:three_prime_UTR | 25.0% |
!! | TAATGAGACTTTTGTTCTTT+GGG | - | chr7_2:69665207-69665226 | Msa1072530:intron | 25.0% |
! | ATTAATTTAAGAGAGAGGAA+AGG | + | chr7_2:69665262-69665281 | None:intergenic | 25.0% |
! | TCCTCTCTCTTAAATTAATT+TGG | - | chr7_2:69665263-69665282 | Msa1072530:intron | 25.0% |
! | ACCAAATTAATTTAAGAGAG+AGG | + | chr7_2:69665267-69665286 | None:intergenic | 25.0% |
! | TTTCAAAACCATGTTTGAAT+TGG | + | chr7_2:69665296-69665315 | None:intergenic | 25.0% |
! | TGAATGTTCGAATTAACATT+TGG | - | chr7_2:69665345-69665364 | Msa1072530:intron | 25.0% |
! | TAGTCCTTAACTATTATGTT+AGG | - | chr7_2:69665570-69665589 | Msa1072530:intron | 25.0% |
! | ACAACCTAACATAATAGTTA+AGG | + | chr7_2:69665577-69665596 | None:intergenic | 25.0% |
! | AGTAATAACTATAGTATACC+TGG | + | chr7_2:69665667-69665686 | None:intergenic | 25.0% |
!!! | GTTATTACTGAAAAAGTGTT+TGG | - | chr7_2:69665678-69665697 | Msa1072530:intron | 25.0% |
! | TAGCATCACTTTATATCATT+GGG | + | chr7_2:69665742-69665761 | None:intergenic | 25.0% |
! | TTAGCATCACTTTATATCAT+TGG | + | chr7_2:69665743-69665762 | None:intergenic | 25.0% |
! | AAGCAAACACTAAAAATGTT+TGG | - | chr7_2:69665904-69665923 | Msa1072530:intron | 25.0% |
! | CAAATATAAGTTTGCAAACT+AGG | + | chr7_2:69666129-69666148 | None:intergenic | 25.0% |
! | ATATTTAGTATGTACATGTG+TGG | + | chr7_2:69666319-69666338 | None:intergenic | 25.0% |
!! | TTTCATTGGGATTGTAATTT+TGG | + | chr7_2:69666497-69666516 | None:intergenic | 25.0% |
!!! | TGAAGAATCTTTTTTGTTGT+TGG | - | chr7_2:69666517-69666536 | Msa1072530:CDS | 25.0% |
!!! | CTTTAAGTTGTTCTCTTTAT+AGG | - | chr7_2:69666790-69666809 | Msa1072530:CDS | 25.0% |
! | TTTATGCCTTAGTCTATTAA+AGG | - | chr7_2:69667007-69667026 | Msa1072530:CDS | 25.0% |
!! | ACATTTTCAGAGTTTAACAA+GGG | + | chr7_2:69667109-69667128 | None:intergenic | 25.0% |
! | GTAATGAGACTTTTGTTCTT+TGG | - | chr7_2:69665206-69665225 | Msa1072530:intron | 30.0% |
! | AATGAGACTTTTGTTCTTTG+GGG | - | chr7_2:69665208-69665227 | Msa1072530:intron | 30.0% |
TTGGTTCCTCTTATTCAATT+TGG | - | chr7_2:69665364-69665383 | Msa1072530:intron | 30.0% | |
TACACTCCAAATTGAATAAG+AGG | + | chr7_2:69665373-69665392 | None:intergenic | 30.0% | |
!!! | GATTTTAACTTGTTGACTTG+TGG | - | chr7_2:69665598-69665617 | Msa1072530:intron | 30.0% |
ATTGTGTTTGATGTTATACC+AGG | - | chr7_2:69665646-69665665 | Msa1072530:intron | 30.0% | |
CATTAATAGATCCTAGTTAC+AGG | + | chr7_2:69665812-69665831 | None:intergenic | 30.0% | |
AAGATGAAAATTACGCTCTA+TGG | - | chr7_2:69665855-69665874 | Msa1072530:intron | 30.0% | |
AATACTTATTGATCCAATGG+TGG | + | chr7_2:69666004-69666023 | None:intergenic | 30.0% | |
ACATATCACATTTGATCCAA+TGG | + | chr7_2:69666028-69666047 | None:intergenic | 30.0% | |
TTGCTATGCAAAATGAAGTT+GGG | + | chr7_2:69666153-69666172 | None:intergenic | 30.0% | |
TTAAAATGGAAACAAAGGGA+AGG | + | chr7_2:69666176-69666195 | None:intergenic | 30.0% | |
! | CGGTTTAAAATGGAAACAAA+GGG | + | chr7_2:69666180-69666199 | None:intergenic | 30.0% |
! | TCGGTTTAAAATGGAAACAA+AGG | + | chr7_2:69666181-69666200 | None:intergenic | 30.0% |
!!! | TTGTTCAGTTGTTTGGTTTT+CGG | + | chr7_2:69666242-69666261 | None:intergenic | 30.0% |
TGCTGTGTTAAAATAAGCTA+CGG | - | chr7_2:69666272-69666291 | Msa1072530:intron | 30.0% | |
!! | CTCAAAATGATTAGCTTATG+CGG | - | chr7_2:69666432-69666451 | Msa1072530:intron | 30.0% |
AAACTATAATGCCTCAAGTA+CGG | - | chr7_2:69666747-69666766 | Msa1072530:CDS | 30.0% | |
ACATCTTAGATTTCATCAAG+AGG | + | chr7_2:69666831-69666850 | None:intergenic | 30.0% | |
! | ACTCAGTATGAGCATTTTAT+AGG | - | chr7_2:69666949-69666968 | Msa1072530:CDS | 30.0% |
! | CTCAGTATGAGCATTTTATA+GGG | - | chr7_2:69666950-69666969 | Msa1072530:CDS | 30.0% |
ATAGGGTACAAAAAGAAAGA+CGG | - | chr7_2:69666967-69666986 | Msa1072530:CDS | 30.0% | |
AAAAAGAAAGACGGAATGAA+AGG | - | chr7_2:69666976-69666995 | Msa1072530:CDS | 30.0% | |
AAAAGAAAGACGGAATGAAA+GGG | - | chr7_2:69666977-69666996 | Msa1072530:CDS | 30.0% | |
TTCCTTCCTTTAATAGACTA+AGG | + | chr7_2:69667016-69667035 | None:intergenic | 30.0% | |
TTAGTCTATTAAAGGAAGGA+AGG | - | chr7_2:69667015-69667034 | Msa1072530:exon | 30.0% | |
TAGTCTATTAAAGGAAGGAA+GGG | - | chr7_2:69667016-69667035 | Msa1072530:exon | 30.0% | |
TTATTCATAGTTCCTGAACT+TGG | - | chr7_2:69667045-69667064 | Msa1072530:five_prime_UTR | 30.0% | |
! | CACATTTTCAGAGTTTAACA+AGG | + | chr7_2:69667110-69667129 | None:intergenic | 30.0% |
GTTCATTGCCAATTCAAACA+TGG | - | chr7_2:69665285-69665304 | Msa1072530:intron | 35.0% | |
! | CATCAATGGTTGATATCATG+CGG | + | chr7_2:69665398-69665417 | None:intergenic | 35.0% |
GATCAACCATGTTGACATAT+CGG | - | chr7_2:69665462-69665481 | Msa1072530:intron | 35.0% | |
ATTGAAAGAACCCTTCGTTA+AGG | + | chr7_2:69665532-69665551 | None:intergenic | 35.0% | |
CTCATGACATCATTCTTAGA+AGG | - | chr7_2:69665763-69665782 | Msa1072530:intron | 35.0% | |
TTTAGTGTTTGCTTGATCGT+AGG | + | chr7_2:69665898-69665917 | None:intergenic | 35.0% | |
TCACTTGTGCACCATAAAAT+TGG | + | chr7_2:69665945-69665964 | None:intergenic | 35.0% | |
GGCAATACTTATTGATCCAA+TGG | + | chr7_2:69666007-69666026 | None:intergenic | 35.0% | |
! | GGATCAATAAGTATTGCCAT+TGG | - | chr7_2:69666009-69666028 | Msa1072530:intron | 35.0% |
GTTGTGACTTATTGACCTAA+CGG | - | chr7_2:69666046-69666065 | Msa1072530:intron | 35.0% | |
!! | CAAGTTTGTTTTCTACCGTT+AGG | + | chr7_2:69666064-69666083 | None:intergenic | 35.0% |
GTAGAAAACAAACTTGTGCA+TGG | - | chr7_2:69666068-69666087 | Msa1072530:intron | 35.0% | |
GTTGCTATGCAAAATGAAGT+TGG | + | chr7_2:69666154-69666173 | None:intergenic | 35.0% | |
CCTTCAAACTCGGTTTAAAA+TGG | + | chr7_2:69666190-69666209 | None:intergenic | 35.0% | |
! | CCATTTTAAACCGAGTTTGA+AGG | - | chr7_2:69666187-69666206 | Msa1072530:intron | 35.0% |
CTAACTCTTGTTCAGTTGTT+TGG | + | chr7_2:69666249-69666268 | None:intergenic | 35.0% | |
GCTGTGTTAAAATAAGCTAC+GGG | - | chr7_2:69666273-69666292 | Msa1072530:intron | 35.0% | |
CTGTGTTAAAATAAGCTACG+GGG | - | chr7_2:69666274-69666293 | Msa1072530:intron | 35.0% | |
TAGTATGTACATGTGTGGTT+GGG | + | chr7_2:69666314-69666333 | None:intergenic | 35.0% | |
TTAGTATGTACATGTGTGGT+TGG | + | chr7_2:69666315-69666334 | None:intergenic | 35.0% | |
TGCTTTAGTGAACATAGATC+CGG | - | chr7_2:69666684-69666703 | Msa1072530:CDS | 35.0% | |
AACATTAAAGTCCGTACTTG+AGG | + | chr7_2:69666761-69666780 | None:intergenic | 35.0% | |
CAAGTACGGACTTTAATGTT+TGG | - | chr7_2:69666761-69666780 | Msa1072530:CDS | 35.0% | |
TTCATCAAGAGGAATGTGAT+GGG | + | chr7_2:69666820-69666839 | None:intergenic | 35.0% | |
TTTCATCAAGAGGAATGTGA+TGG | + | chr7_2:69666821-69666840 | None:intergenic | 35.0% | |
AAAGAAAGACGGAATGAAAG+GGG | - | chr7_2:69666978-69666997 | Msa1072530:CDS | 35.0% | |
TGCCTTAGTCTATTAAAGGA+AGG | - | chr7_2:69667011-69667030 | Msa1072530:CDS | 35.0% | |
TTTACAATCAGTCCAAGTTC+AGG | + | chr7_2:69667060-69667079 | None:intergenic | 35.0% | |
AACTTGGACTGATTGTAAAG+AGG | - | chr7_2:69667061-69667080 | Msa1072530:five_prime_UTR | 35.0% | |
!! | TTGATTTGGATTGGTCTTCG+CGG | + | chr7_2:69664803-69664822 | None:intergenic | 40.0% |
!! | GGTGGTATGTTGATTTGGAT+TGG | + | chr7_2:69664812-69664831 | None:intergenic | 40.0% |
! | AGGATGGTGGTATGTTGATT+TGG | + | chr7_2:69664817-69664836 | None:intergenic | 40.0% |
GATGAGAAGAGCGATATGAA+CGG | + | chr7_2:69664964-69664983 | None:intergenic | 40.0% | |
!! | TAGCTCTAATGTCGTCGTTT+GGG | + | chr7_2:69665003-69665022 | None:intergenic | 40.0% |
!! | TTAGCTCTAATGTCGTCGTT+TGG | + | chr7_2:69665004-69665023 | None:intergenic | 40.0% |
TTATCCTTGGCAATAGGAGA+AGG | + | chr7_2:69665052-69665071 | None:intergenic | 40.0% | |
AATCCAACCACGATTATCCT+TGG | + | chr7_2:69665065-69665084 | None:intergenic | 40.0% | |
ACTTGTGCTTCTCTTCATCT+CGG | - | chr7_2:69665136-69665155 | Msa1072530:CDS | 40.0% | |
CTCTTCATCTCGGTGAAATT+CGG | - | chr7_2:69665146-69665165 | Msa1072530:intron | 40.0% | |
ATGTCAACATGGTTGATCGT+CGG | + | chr7_2:69665460-69665479 | None:intergenic | 40.0% | |
CAATGACCGATATGTCAACA+TGG | + | chr7_2:69665471-69665490 | None:intergenic | 40.0% | |
ATGAGCCAAATCCTTAACGA+AGG | - | chr7_2:69665518-69665537 | Msa1072530:intron | 40.0% | |
TGAGCCAAATCCTTAACGAA+GGG | - | chr7_2:69665519-69665538 | Msa1072530:intron | 40.0% | |
AGAACCCTTCGTTAAGGATT+TGG | + | chr7_2:69665526-69665545 | None:intergenic | 40.0% | |
TAAGGAGTTAAACATCCAGC+AGG | + | chr7_2:69665705-69665724 | None:intergenic | 40.0% | |
AGTTACAGGTAGCAGTTTAG+TGG | + | chr7_2:69665798-69665817 | None:intergenic | 40.0% | |
CTAAACTGCTACCTGTAACT+AGG | - | chr7_2:69665798-69665817 | Msa1072530:intron | 40.0% | |
! | GAGCGTAATTTTCATCTTGC+TGG | + | chr7_2:69665853-69665872 | None:intergenic | 40.0% |
CACTTGTTTGTTTCCACCAT+TGG | - | chr7_2:69665988-69666007 | Msa1072530:intron | 40.0% | |
CACATCATTGCCTTCAAACT+CGG | + | chr7_2:69666200-69666219 | None:intergenic | 40.0% | |
!!! | TCAGTTGTTTGGTTTTCGGT+TGG | + | chr7_2:69666238-69666257 | None:intergenic | 40.0% |
GTTCACAGTAATCTGTTTGC+AGG | - | chr7_2:69666567-69666586 | Msa1072530:CDS | 40.0% | |
AACAGCGAGGTAACTGATAT+TGG | - | chr7_2:69666595-69666614 | Msa1072530:CDS | 40.0% | |
! | AACTGATATTGGCTATGCTG+AGG | - | chr7_2:69666606-69666625 | Msa1072530:CDS | 40.0% |
TAGTGAACATAGATCCGGTT+CGG | - | chr7_2:69666689-69666708 | Msa1072530:CDS | 40.0% | |
ATAAAGTAAGCACTCCGAAC+CGG | + | chr7_2:69666706-69666725 | None:intergenic | 40.0% | |
! | GTTCGGAGTGCTTACTTTAT+AGG | - | chr7_2:69666706-69666725 | Msa1072530:CDS | 40.0% |
TCATCAAGAGGAATGTGATG+GGG | + | chr7_2:69666819-69666838 | None:intergenic | 40.0% | |
AAGAAAGACGGAATGAAAGG+GGG | - | chr7_2:69666979-69666998 | Msa1072530:CDS | 40.0% | |
AACGCAATGTCATCAACAGC+CGG | - | chr7_2:69664770-69664789 | Msa1072530:three_prime_UTR | 45.0% | |
TTGAAGGAATGAGGTGACGA+GGG | + | chr7_2:69664882-69664901 | None:intergenic | 45.0% | |
TTTGAAGGAATGAGGTGACG+AGG | + | chr7_2:69664883-69664902 | None:intergenic | 45.0% | |
! | GTGAGGTCTTTGAAGGAATG+AGG | + | chr7_2:69664891-69664910 | None:intergenic | 45.0% |
! | AGCTCTAATGTCGTCGTTTG+GGG | + | chr7_2:69665002-69665021 | None:intergenic | 45.0% |
TGGCAATAGGAGAAGGAAAG+CGG | + | chr7_2:69665045-69665064 | None:intergenic | 45.0% | |
CTTTCCTTCTCCTATTGCCA+AGG | - | chr7_2:69665045-69665064 | Msa1072530:CDS | 45.0% | |
CCACGATTATCCTTGGCAAT+AGG | + | chr7_2:69665058-69665077 | None:intergenic | 45.0% | |
CCTATTGCCAAGGATAATCG+TGG | - | chr7_2:69665055-69665074 | Msa1072530:CDS | 45.0% | |
TTGCCAAGGATAATCGTGGT+TGG | - | chr7_2:69665059-69665078 | Msa1072530:CDS | 45.0% | |
! | GAAGAAAGTGCGAGAGCAAT+AGG | + | chr7_2:69665094-69665113 | None:intergenic | 45.0% |
GCACTTTCTTCCAGCATTTC+AGG | - | chr7_2:69665103-69665122 | Msa1072530:CDS | 45.0% | |
CTTTCTTCCAGCATTTCAGG+TGG | - | chr7_2:69665106-69665125 | Msa1072530:CDS | 45.0% | |
TGATTTCCTCTCAACTTCCC+AGG | + | chr7_2:69665172-69665191 | None:intergenic | 45.0% | |
!! | GGGTGCTGCTATCAAGTTTA+GGG | - | chr7_2:69665228-69665247 | Msa1072530:intron | 45.0% |
!! | GAAAAAGTGTTTGGTCCTGC+TGG | - | chr7_2:69665687-69665706 | Msa1072530:intron | 45.0% |
GAAACAAACAAGTGCGTGCA+TGG | + | chr7_2:69665982-69666001 | None:intergenic | 45.0% | |
CGAGTTTGAAGGCAATGATG+TGG | - | chr7_2:69666198-69666217 | Msa1072530:intron | 45.0% | |
ATAAGCTACGGGGTTCTCAA+CGG | - | chr7_2:69666284-69666303 | Msa1072530:intron | 45.0% | |
!! | GATTAGCTTATGCGGTCTGT+AGG | - | chr7_2:69666440-69666459 | Msa1072530:intron | 45.0% |
TGCGGTCTGTAGGCAAAATT+TGG | - | chr7_2:69666450-69666469 | Msa1072530:intron | 45.0% | |
GCGGTCTGTAGGCAAAATTT+GGG | - | chr7_2:69666451-69666470 | Msa1072530:intron | 45.0% | |
CACAGTAATCTGTTTGCAGG+TGG | - | chr7_2:69666570-69666589 | Msa1072530:CDS | 45.0% | |
AACAACCTCATCTCTGCCAA+TGG | + | chr7_2:69666635-69666654 | None:intergenic | 45.0% | |
AAGCATGTGCAGTATGAGCA+GGG | + | chr7_2:69666669-69666688 | None:intergenic | 45.0% | |
AAAGCATGTGCAGTATGAGC+AGG | + | chr7_2:69666670-69666689 | None:intergenic | 45.0% | |
TGACATTGCGTTGCTGCTAC+TGG | + | chr7_2:69664762-69664781 | None:intergenic | 50.0% | |
! | TTGAAACATGGCGGAAGTGG+AGG | + | chr7_2:69664846-69664865 | None:intergenic | 50.0% |
CCACTTCCGCCATGTTTCAA+CGG | - | chr7_2:69664846-69664865 | Msa1072530:three_prime_UTR | 50.0% | |
GGAGAGAGTGAGGTCTTTGA+AGG | + | chr7_2:69664898-69664917 | None:intergenic | 50.0% | |
GGAAGATGGAGAGGACGAAA+GGG | + | chr7_2:69664919-69664938 | None:intergenic | 50.0% | |
AGGAAGATGGAGAGGACGAA+AGG | + | chr7_2:69664920-69664939 | None:intergenic | 50.0% | |
GGCAATAGGAGAAGGAAAGC+GGG | + | chr7_2:69665044-69665063 | None:intergenic | 50.0% | |
AACAGCTCCACCTGAAATGC+TGG | + | chr7_2:69665116-69665135 | None:intergenic | 50.0% | |
ATCTCGGTGAAATTCGGCCT+GGG | - | chr7_2:69665152-69665171 | Msa1072530:intron | 50.0% | |
!! | GGGGTGCTGCTATCAAGTTT+AGG | - | chr7_2:69665227-69665246 | Msa1072530:intron | 50.0% |
TGGGTCATGCGCACAAGTTA+AGG | + | chr7_2:69665723-69665742 | None:intergenic | 50.0% | |
TTTGCAGGTGGAAAACAGCG+AGG | - | chr7_2:69666582-69666601 | Msa1072530:CDS | 50.0% | |
CATTGCGTTGCTGCTACTGG+TGG | + | chr7_2:69664759-69664778 | None:intergenic | 55.0% | |
! | AAACATGGCGGAAGTGGAGG+AGG | + | chr7_2:69664843-69664862 | None:intergenic | 55.0% |
! | CCGTTGAAACATGGCGGAAG+TGG | + | chr7_2:69664849-69664868 | None:intergenic | 55.0% |
GCGGATCCGTTGAAACATGG+CGG | + | chr7_2:69664855-69664874 | None:intergenic | 55.0% | |
AGGAATGAGGTGACGAGGGA+GGG | + | chr7_2:69664878-69664897 | None:intergenic | 55.0% | |
AAGGAATGAGGTGACGAGGG+AGG | + | chr7_2:69664879-69664898 | None:intergenic | 55.0% | |
AGGACGAAAGGGAGAGAGTG+AGG | + | chr7_2:69664908-69664927 | None:intergenic | 55.0% | |
CGAGGAAGAGGAAGATGGAG+AGG | + | chr7_2:69664928-69664947 | None:intergenic | 55.0% | |
CCAAGCGAGGAAGAGGAAGA+TGG | + | chr7_2:69664933-69664952 | None:intergenic | 55.0% | |
CCATCTTCCTCTTCCTCGCT+TGG | - | chr7_2:69664930-69664949 | Msa1072530:three_prime_UTR | 55.0% | |
GAGAGATCCAAGCGAGGAAG+AGG | + | chr7_2:69664940-69664959 | None:intergenic | 55.0% | |
AACGGAGAGAGATCCAAGCG+AGG | + | chr7_2:69664946-69664965 | None:intergenic | 55.0% | |
TTTGGGGAAGAGAGAGGGAG+TGG | + | chr7_2:69664986-69665005 | None:intergenic | 55.0% | |
CGTCGTTTGGGGAAGAGAGA+GGG | + | chr7_2:69664991-69665010 | None:intergenic | 55.0% | |
TCGTCGTTTGGGGAAGAGAG+AGG | + | chr7_2:69664992-69665011 | None:intergenic | 55.0% | |
CATCTCGGTGAAATTCGGCC+TGG | - | chr7_2:69665151-69665170 | Msa1072530:intron | 55.0% | |
ATTCGGCCTGGGAAGTTGAG+AGG | - | chr7_2:69665163-69665182 | Msa1072530:intron | 55.0% | |
GGCTATGCTGAGGTGACCAT+TGG | - | chr7_2:69666616-69666635 | Msa1072530:CDS | 55.0% | |
GGTGACCATTGGCAGAGATG+AGG | - | chr7_2:69666627-69666646 | Msa1072530:CDS | 55.0% | |
!! | GTGGTGGTGGTGGTTCTCTC+TGG | + | chr7_2:69664734-69664753 | None:intergenic | 60.0% |
!! | GTTGCTGCTACTGGTGGTGG+TGG | + | chr7_2:69664753-69664772 | None:intergenic | 60.0% |
TGCGTTGCTGCTACTGGTGG+TGG | + | chr7_2:69664756-69664775 | None:intergenic | 60.0% | |
GAAGTGGAGGAGGAGGAGGA+TGG | + | chr7_2:69664833-69664852 | None:intergenic | 60.0% | |
GGGGCGGATCCGTTGAAACA+TGG | + | chr7_2:69664858-69664877 | None:intergenic | 60.0% | |
GGAATGAGGTGACGAGGGAG+GGG | + | chr7_2:69664877-69664896 | None:intergenic | 60.0% | |
!! | ACTGGTGGTGGTGGTGGTGG+TGG | + | chr7_2:69664744-69664763 | None:intergenic | 65.0% |
!! | GCTACTGGTGGTGGTGGTGG+TGG | + | chr7_2:69664747-69664766 | None:intergenic | 65.0% |
!! | GCTGCTACTGGTGGTGGTGG+TGG | + | chr7_2:69664750-69664769 | None:intergenic | 65.0% |
!! | TGGTCTTCGCGGTGTTGCGC+CGG | + | chr7_2:69664792-69664811 | None:intergenic | 65.0% |
GTGGAGGAGGAGGAGGATGG+TGG | + | chr7_2:69664830-69664849 | None:intergenic | 65.0% | |
! | CATGGCGGAAGTGGAGGAGG+AGG | + | chr7_2:69664840-69664859 | None:intergenic | 65.0% |
ATGAGGTGACGAGGGAGGGG+CGG | + | chr7_2:69664874-69664893 | None:intergenic | 65.0% | |
GGCGGAAGTGGAGGAGGAGG+AGG | + | chr7_2:69664837-69664856 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 69664610 | 69667142 | 69664610 | ID=Msa1072530;Name=Msa1072530 |
chr7_2 | mRNA | 69664610 | 69667142 | 69664610 | ID=Msa1072530-mRNA-1;Parent=Msa1072530;Name=Msa1072530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=109|1|1|1|1|1|2|347|245 |
chr7_2 | exon | 69664610 | 69665163 | 69664610 | ID=Msa1072530-mRNA-1:exon:15518;Parent=Msa1072530-mRNA-1 |
chr7_2 | exon | 69666503 | 69667142 | 69666503 | ID=Msa1072530-mRNA-1:exon:15517;Parent=Msa1072530-mRNA-1 |
chr7_2 | five_prime_UTR | 69667034 | 69667142 | 69667034 | ID=Msa1072530-mRNA-1:five_prime_utr;Parent=Msa1072530-mRNA-1 |
chr7_2 | CDS | 69666503 | 69667033 | 69666503 | ID=Msa1072530-mRNA-1:cds;Parent=Msa1072530-mRNA-1 |
chr7_2 | CDS | 69664957 | 69665163 | 69664957 | ID=Msa1072530-mRNA-1:cds;Parent=Msa1072530-mRNA-1 |
chr7_2 | three_prime_UTR | 69664610 | 69664956 | 69664610 | ID=Msa1072530-mRNA-1:three_prime_utr;Parent=Msa1072530-mRNA-1 |
Gene Sequence |
Protein sequence |