Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000570 | sp|Q654D9|CSTR1_ORYSJ | 73.248 | 314 | 63 | 2 | 27 | 319 | 1 | 314 | 2.80e-170 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000570 | Msa0085720 | -0.805033 | 1.622616e-49 | -8.615850e-47 |
| Msa0000570 | Msa0287670 | -0.804038 | 2.616722e-49 | -8.615850e-47 |
| Msa0000570 | Msa0381220 | -0.803724 | 3.041345e-49 | -8.615850e-47 |
| Msa0000570 | Msa0388030 | 0.804360 | 2.242828e-49 | -8.615850e-47 |
| Msa0000570 | Msa0431020 | -0.825784 | 3.880093e-54 | -8.615850e-47 |
| Msa0000570 | Msa0491500 | -0.806183 | 9.310217e-50 | -8.615850e-47 |
| Msa0000570 | Msa0526670 | 0.809731 | 1.636632e-50 | -8.615850e-47 |
| Msa0000570 | Msa0580390 | 0.809440 | 1.889936e-50 | -8.615850e-47 |
| Msa0000570 | Msa0743120 | 0.806122 | 9.589914e-50 | -8.615850e-47 |
| Msa0000570 | Msa0795890 | 0.812138 | 4.928533e-51 | -8.615850e-47 |
| Msa0000570 | Msa0827470 | -0.818832 | 1.595123e-52 | -8.615850e-47 |
| Msa0000570 | Msa0833670 | 0.808210 | 3.464073e-50 | -8.615850e-47 |
| Msa0000570 | Msa1072530 | 0.815481 | 9.044307e-52 | -8.615850e-47 |
| Msa0000570 | Msa1130290 | 0.996220 | 7.870674e-225 | -8.615850e-47 |
| Msa0000570 | Msa1132860 | 0.813578 | 2.384772e-51 | -8.615850e-47 |
| Msa0000570 | Msa1207460 | 0.813952 | 1.972712e-51 | -8.615850e-47 |
| Msa0000570 | Msa1229850 | -0.821418 | 4.081085e-53 | -8.615850e-47 |
| Msa0000570 | Msa1350690 | -0.804292 | 2.316342e-49 | -8.615850e-47 |
| Msa0000570 | Msa1375700 | 0.811268 | 7.620411e-51 | -8.615850e-47 |
| Msa0000570 | Msa1390280 | 0.811144 | 8.106981e-51 | -8.615850e-47 |
| Msa0000570 | Msa1459760 | 0.807758 | 4.323150e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000570 | MtrunA17_Chr7g0275441 | 92.857 | 336 | 3 | 2 | 27 | 341 | 1 | 336 | 0.0 | 624 |
| Msa0000570 | MtrunA17_Chr5g0448741 | 36.615 | 325 | 168 | 8 | 15 | 310 | 35 | 350 | 1.14e-56 | 187 |
| Msa0000570 | MtrunA17_Chr1g0213541 | 26.776 | 366 | 221 | 10 | 11 | 341 | 25 | 378 | 1.57e-32 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000570 | AT5G41760.1 | 71.131 | 336 | 73 | 4 | 29 | 341 | 6 | 340 | 1.47e-170 | 478 |
| Msa0000570 | AT5G41760.2 | 71.131 | 336 | 73 | 4 | 29 | 341 | 6 | 340 | 1.47e-170 | 478 |
| Msa0000570 | AT3G59360.1 | 26.571 | 350 | 211 | 9 | 14 | 329 | 23 | 360 | 1.18e-31 | 123 |
| Msa0000570 | AT3G59360.2 | 26.571 | 350 | 211 | 9 | 14 | 329 | 23 | 360 | 1.18e-31 | 123 |
| Msa0000570 | AT2G43240.1 | 26.136 | 352 | 213 | 10 | 23 | 340 | 39 | 377 | 8.38e-30 | 118 |
| Msa0000570 | AT2G43240.2 | 24.709 | 344 | 209 | 8 | 23 | 340 | 39 | 358 | 4.92e-29 | 115 |
Find 116 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGACTCGTCTTCGTTAC+TGG | 0.105086 | 1_1:-1720814 | Msa0000570:CDS |
| TCATCTGATTTAACTGTTAA+TGG | 0.110752 | 1_1:+1717343 | None:intergenic |
| CACTTCCACTTATCAGATTA+TGG | 0.148286 | 1_1:-1720363 | Msa0000570:CDS |
| TCTATTTATGGCTGTATTAA+TGG | 0.156740 | 1_1:-1715910 | Msa0000570:three_prime_UTR |
| CCTATATTATGCTCTATTTA+TGG | 0.156884 | 1_1:-1715922 | Msa0000570:three_prime_UTR |
| CTGAGAAATGTCTACTAATT+TGG | 0.179325 | 1_1:-1715847 | Msa0000570:three_prime_UTR |
| ATAGAGGGCCAATGTTTATT+TGG | 0.184058 | 1_1:+1716074 | None:intergenic |
| TTCAGAGGTGGCTTTGAAAA+TGG | 0.184703 | 1_1:-1718304 | Msa0000570:CDS |
| ATTACTTTAATAGGCCTTCT+AGG | 0.197101 | 1_1:+1716334 | None:intergenic |
| CATTTCATTCAATTAACTAT+TGG | 0.238094 | 1_1:+1716187 | None:intergenic |
| CTACTGGTCTTCTGGTTTCA+TGG | 0.238119 | 1_1:-1718213 | Msa0000570:CDS |
| ATCAAACAAATTACTTTAAT+AGG | 0.240310 | 1_1:+1716325 | None:intergenic |
| TTCCACTCCGTTGTCATCTT+TGG | 0.244002 | 1_1:+1720467 | None:intergenic |
| GGCATATCTAAGAGCATATT+TGG | 0.244539 | 1_1:+1717364 | None:intergenic |
| TACCCCATTCAAATTAATTA+TGG | 0.255416 | 1_1:+1715966 | None:intergenic |
| TCTCAGTTTAAAGAGATAAT+AGG | 0.267329 | 1_1:+1715864 | None:intergenic |
| AGGATGTTGTCCTTGGATTT+AGG | 0.282831 | 1_1:-1716141 | Msa0000570:three_prime_UTR |
| AGTTGCATAATCGTATTTAT+AGG | 0.286946 | 1_1:+1720568 | None:intergenic |
| AAAACGTGGTTTACTCAATT+AGG | 0.291579 | 1_1:-1716161 | Msa0000570:three_prime_UTR |
| CATAAATAGAGCATAATATA+GGG | 0.297315 | 1_1:+1715923 | None:intergenic |
| TCTAGGGTCTACTGGTCTTC+TGG | 0.302371 | 1_1:-1718221 | Msa0000570:CDS |
| AGGATCCATTGGTTTGTGAT+AGG | 0.313195 | 1_1:+1720588 | None:intergenic |
| TGGTTGGTGGTATTAAATCT+AGG | 0.323958 | 1_1:-1718238 | Msa0000570:CDS |
| TTCTCACTGCAGCTATTCTT+AGG | 0.325901 | 1_1:-1717430 | Msa0000570:intron |
| TGGAATTGGTGCTGAGAAAA+TGG | 0.331852 | 1_1:+1719155 | None:intergenic |
| CCATAAATAGAGCATAATAT+AGG | 0.333193 | 1_1:+1715922 | None:intergenic |
| CCAATTCCAGGTTACATGTT+AGG | 0.344480 | 1_1:-1719141 | Msa0000570:CDS |
| CTATTCTTCATTGTATTCAT+AGG | 0.352580 | 1_1:+1715805 | None:intergenic |
| CTCAATTAGGATGTTGTCCT+TGG | 0.356099 | 1_1:-1716148 | Msa0000570:three_prime_UTR |
| CTATTTATGGCTGTATTAAT+GGG | 0.373299 | 1_1:-1715909 | Msa0000570:three_prime_UTR |
| TTCACCATAATTAATTTGAA+TGG | 0.374664 | 1_1:-1715970 | Msa0000570:three_prime_UTR |
| GTGGATGGCCATTGTGTTGT+TGG | 0.386755 | 1_1:-1720053 | Msa0000570:CDS |
| TCACCATAATTAATTTGAAT+GGG | 0.388144 | 1_1:-1715969 | Msa0000570:three_prime_UTR |
| TAGAGGGCCAATGTTTATTT+GGG | 0.388522 | 1_1:+1716075 | None:intergenic |
| AAAGTGTGGGCATCTTCATT+TGG | 0.388880 | 1_1:-1716254 | Msa0000570:three_prime_UTR |
| TTCTCTCTGCTGGTACTGAT+AGG | 0.394142 | 1_1:-1716105 | Msa0000570:three_prime_UTR |
| GACATCTGAATACTATGCTT+TGG | 0.398420 | 1_1:-1717263 | Msa0000570:intron |
| CCTAACATGTAACCTGGAAT+TGG | 0.398709 | 1_1:+1719141 | None:intergenic |
| CACCGTTCTCACCAGTTCTC+AGG | 0.400818 | 1_1:-1720719 | Msa0000570:intron |
| AGATAAATAACAGAAGGAAT+TGG | 0.402605 | 1_1:+1720428 | None:intergenic |
| ACTTCCACTTATCAGATTAT+GGG | 0.406816 | 1_1:-1720362 | Msa0000570:CDS |
| TTAGACTCGTCTTCGTTACT+GGG | 0.408634 | 1_1:-1720813 | Msa0000570:CDS |
| GGATCCATTGGTTTGTGATA+GGG | 0.409744 | 1_1:+1720589 | None:intergenic |
| TCAGAGGTGGCTTTGAAAAT+GGG | 0.417205 | 1_1:-1718303 | Msa0000570:CDS |
| AAAACAACGACAGCTTATAC+TGG | 0.425220 | 1_1:-1719059 | Msa0000570:CDS |
| GCCATTGTGTTGTTGGCTGT+TGG | 0.428148 | 1_1:-1720046 | Msa0000570:CDS |
| GTATTAAATCTAGGGTCTAC+TGG | 0.432983 | 1_1:-1718229 | Msa0000570:CDS |
| TTTCTACATTTCTACCTGGT+TGG | 0.434518 | 1_1:-1716016 | Msa0000570:three_prime_UTR |
| TTGAAAACTTCGGCGAGAAA+TGG | 0.444029 | 1_1:+1720542 | None:intergenic |
| CTGTGTCAAGTTTGTTACTT+TGG | 0.445808 | 1_1:-1720514 | Msa0000570:CDS |
| ATTGAATATGCGGTGCCACC+AGG | 0.452887 | 1_1:+1718279 | None:intergenic |
| GAAGAAGATGCAGTGGTACT+TGG | 0.460958 | 1_1:-1720755 | Msa0000570:CDS |
| ATGGATACACTGTCACTACT+TGG | 0.461690 | 1_1:-1718258 | Msa0000570:CDS |
| ATTACCCATAATCTGATAAG+TGG | 0.462033 | 1_1:+1720358 | None:intergenic |
| TGGCTGTATTAATGGGATGA+AGG | 0.464046 | 1_1:-1715902 | Msa0000570:three_prime_UTR |
| GCTTGTCTCTCAGCATTAGC+TGG | 0.466148 | 1_1:-1719108 | Msa0000570:CDS |
| ATCGTATTTATAGGATCCAT+TGG | 0.466751 | 1_1:+1720577 | None:intergenic |
| GTCAAGTTTGTTACTTTGGA+AGG | 0.476514 | 1_1:-1720510 | Msa0000570:CDS |
| AGTCTTTAACTTCTCTCTGC+TGG | 0.477378 | 1_1:-1716115 | Msa0000570:three_prime_UTR |
| TCATTCAATTAACTATTGGA+TGG | 0.479034 | 1_1:+1716191 | None:intergenic |
| TGTATTCATAGGAAGGAGAT+AGG | 0.480129 | 1_1:+1715816 | None:intergenic |
| CATTCAATTAACTATTGGAT+GGG | 0.489211 | 1_1:+1716192 | None:intergenic |
| TGTAAATTTACCTGCAGTGT+AGG | 0.495600 | 1_1:+1717856 | None:intergenic |
| TGGTGGCACCGCATATTCAA+TGG | 0.498420 | 1_1:-1718277 | Msa0000570:CDS |
| TGCTGAGAAAATGGAGTCAC+AGG | 0.499930 | 1_1:+1719164 | None:intergenic |
| TCCGTTGTCATCTTTGGCAA+TGG | 0.500763 | 1_1:+1720473 | None:intergenic |
| TCATTGAAGTTTCTGTTGAT+CGG | 0.503963 | 1_1:-1717309 | Msa0000570:CDS |
| TTAGGTTTATTCTACATCCA+TGG | 0.505122 | 1_1:-1717926 | Msa0000570:intron |
| CACTGTCACTACTTGGTTGG+TGG | 0.505835 | 1_1:-1718251 | Msa0000570:CDS |
| TATCTAAGAGCATATTTGGT+GGG | 0.511183 | 1_1:+1717368 | None:intergenic |
| GGCTGTATTAATGGGATGAA+GGG | 0.513937 | 1_1:-1715901 | Msa0000570:three_prime_UTR |
| TGTTGGAACAACCACAAGTC+AGG | 0.515719 | 1_1:-1720029 | Msa0000570:intron |
| GCGAGTGAGTGTATCGTATC+CGG | 0.516124 | 1_1:-1720791 | Msa0000570:CDS |
| AGGTAGAAATGTAGAAATGT+AGG | 0.516722 | 1_1:+1716022 | None:intergenic |
| GGTTGGTGGTATTAAATCTA+GGG | 0.522214 | 1_1:-1718237 | Msa0000570:CDS |
| TCTTCATTGTATTCATAGGA+AGG | 0.525483 | 1_1:+1715809 | None:intergenic |
| TTGACTTCTTGTGTCATAGA+GGG | 0.530553 | 1_1:+1716059 | None:intergenic |
| CTTGACTTCTTGTGTCATAG+AGG | 0.532939 | 1_1:+1716058 | None:intergenic |
| ACATGCTGATAATATTGTAA+AGG | 0.534264 | 1_1:-1718182 | Msa0000570:intron |
| CAACTTCAAACCTACACTGC+AGG | 0.538512 | 1_1:-1717866 | Msa0000570:intron |
| AAAGACTTTGCCTAAATCCA+AGG | 0.539107 | 1_1:+1716131 | None:intergenic |
| AGAGTGAGTGACCTGAGAAC+TGG | 0.541709 | 1_1:+1720708 | None:intergenic |
| GTTCAGCGGTTTCTAAAGTG+TGG | 0.549463 | 1_1:-1716268 | Msa0000570:three_prime_UTR |
| TTAGGTCAAGGGCTGTGGAG+AGG | 0.552595 | 1_1:-1719190 | Msa0000570:intron |
| TCTCTCTGCTGGTACTGATA+GGG | 0.553615 | 1_1:-1716104 | Msa0000570:three_prime_UTR |
| GTGGCTTTGAAAATGGGCCC+TGG | 0.553886 | 1_1:-1718297 | Msa0000570:CDS |
| TAAACAAGTTGGCAGCAAAA+CGG | 0.556668 | 1_1:-1720841 | None:intergenic |
| ATTGCGGATGATTTCAGAGG+TGG | 0.557405 | 1_1:-1718316 | Msa0000570:CDS |
| TTGAATATGCGGTGCCACCA+GGG | 0.559611 | 1_1:+1718280 | None:intergenic |
| CACAGCAAGCTTGAAAACTT+CGG | 0.561847 | 1_1:+1720532 | None:intergenic |
| CATTGTCAGCAGCATTGCCA+TGG | 0.568189 | 1_1:+1717909 | None:intergenic |
| GAATATCATTTCAATCTGCA+TGG | 0.570946 | 1_1:-1716290 | Msa0000570:three_prime_UTR |
| CACCATAATTAATTTGAATG+GGG | 0.571757 | 1_1:-1715968 | Msa0000570:three_prime_UTR |
| GCTTTGAAAATGGGCCCTGG+TGG | 0.578042 | 1_1:-1718294 | Msa0000570:CDS |
| CAATCTGGCAAAGCTTATTG+CGG | 0.578679 | 1_1:-1718332 | Msa0000570:CDS |
| TGAATGAGATAAATAACAGA+AGG | 0.592918 | 1_1:+1720422 | None:intergenic |
| ATCTAAGAGCATATTTGGTG+GGG | 0.594223 | 1_1:+1717369 | None:intergenic |
| TACATTTCTACATTTCTACC+TGG | 0.598019 | 1_1:-1716020 | Msa0000570:three_prime_UTR |
| CTTATTGCGGATGATTTCAG+AGG | 0.598849 | 1_1:-1718319 | Msa0000570:CDS |
| TTCAGCGGTTTCTAAAGTGT+GGG | 0.602770 | 1_1:-1716267 | Msa0000570:three_prime_UTR |
| GTTACTGCCCAAATAAACAT+TGG | 0.607519 | 1_1:-1716082 | Msa0000570:three_prime_UTR |
| AGAACTCCTAACATGTAACC+TGG | 0.612089 | 1_1:+1719135 | None:intergenic |
| ATACACTGTCACTACTTGGT+TGG | 0.612523 | 1_1:-1718254 | Msa0000570:CDS |
| GAAATGTAGGCTACAGATCG+TGG | 0.616082 | 1_1:+1716035 | None:intergenic |
| TGAATGAAATGCACAAAACG+TGG | 0.617091 | 1_1:-1716175 | Msa0000570:three_prime_UTR |
| TTTCAATCTGCATGGTTCAG+CGG | 0.618958 | 1_1:-1716282 | Msa0000570:three_prime_UTR |
| ACAACCCTATCACAAACCAA+TGG | 0.620994 | 1_1:-1720593 | Msa0000570:CDS |
| ATAAATAGAGCATAATATAG+GGG | 0.626427 | 1_1:+1715924 | None:intergenic |
| GACCTGAGAACTGGTGAGAA+CGG | 0.641704 | 1_1:+1720717 | None:intergenic |
| ATATCTAAGAGCATATTTGG+TGG | 0.644245 | 1_1:+1717367 | None:intergenic |
| TGCCAAAGATGACAACGGAG+TGG | 0.667533 | 1_1:-1720469 | Msa0000570:CDS |
| AGTTTGTACAGCAACCAACC+AGG | 0.668917 | 1_1:+1716002 | None:intergenic |
| CAGTGTATCCATTGAATATG+CGG | 0.671891 | 1_1:+1718269 | None:intergenic |
| ACCATTGCCAAAGATGACAA+CGG | 0.697822 | 1_1:-1720474 | Msa0000570:CDS |
| ATAATGTAGTACCTGACTTG+TGG | 0.699171 | 1_1:+1720018 | None:intergenic |
| TCCAACAGCCAACAACACAA+TGG | 0.706504 | 1_1:+1720045 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAATTAATTATTTATTC+TGG | - | chr1_1:1716817-1716836 | Msa0000570:intron | 10.0% |
| !!! | TGTTTTTTTTATTCTTTTAT+TGG | - | chr1_1:1717905-1717924 | Msa0000570:CDS | 10.0% |
| !! | TAAATGTATACAAATTAAAT+GGG | - | chr1_1:1718245-1718264 | Msa0000570:CDS | 10.0% |
| !!! | AATTTTATGCTTATTTACTT+GGG | + | chr1_1:1717070-1717089 | None:intergenic | 15.0% |
| !!! | ATTCTTAATTTGTTGTATTT+GGG | + | chr1_1:1717237-1717256 | None:intergenic | 15.0% |
| !!! | TATTCTTAATTTGTTGTATT+TGG | + | chr1_1:1717238-1717257 | None:intergenic | 15.0% |
| !!! | TATACAAAGTTTTTGTTTTT+TGG | - | chr1_1:1717344-1717363 | Msa0000570:CDS | 15.0% |
| !!! | ATACAAAGTTTTTGTTTTTT+GGG | - | chr1_1:1717345-1717364 | Msa0000570:CDS | 15.0% |
| !! | ATAAAAAAGCTGAAAATATA+GGG | + | chr1_1:1718014-1718033 | None:intergenic | 15.0% |
| !! | AATAAAAAAGCTGAAAATAT+AGG | + | chr1_1:1718015-1718034 | None:intergenic | 15.0% |
| !! | CTAAATGTATACAAATTAAA+TGG | - | chr1_1:1718244-1718263 | Msa0000570:CDS | 15.0% |
| !!! | TTTTAAAAAAGATTATTCAG+TGG | + | chr1_1:1718560-1718579 | None:intergenic | 15.0% |
| !!! | ACTGAATAATCTTTTTTAAA+AGG | - | chr1_1:1718559-1718578 | Msa0000570:intron | 15.0% |
| !! | ATCAAACAAATTACTTTAAT+AGG | + | chr1_1:1720306-1720325 | None:intergenic | 15.0% |
| !! | AAAGGTTATACTAGTATAAA+TGG | - | chr1_1:1716980-1716999 | Msa0000570:intron | 20.0% |
| !!! | ATTTTATGCTTATTTACTTG+GGG | + | chr1_1:1717069-1717088 | None:intergenic | 20.0% |
| !!! | CAATTTTATGCTTATTTACT+TGG | + | chr1_1:1717071-1717090 | None:intergenic | 20.0% |
| !!! | TCTATAATGGTTATTGTTTT+AGG | - | chr1_1:1717420-1717439 | Msa0000570:CDS | 20.0% |
| !! | AGTTTAAAAGATTATCACAA+TGG | + | chr1_1:1717679-1717698 | None:intergenic | 20.0% |
| !! | TAAAAAAGCTGAAAATATAG+GGG | + | chr1_1:1718013-1718032 | None:intergenic | 20.0% |
| !! | TACAACTTTCAACAAAAAAA+CGG | + | chr1_1:1718064-1718083 | None:intergenic | 20.0% |
| !! | GTAGTATGGAAAAATAAAAA+TGG | + | chr1_1:1718501-1718520 | None:intergenic | 20.0% |
| !! | TTCATCAAATATATGTAGTA+TGG | + | chr1_1:1718515-1718534 | None:intergenic | 20.0% |
| !! | GGAAAAGAAAATACATAAAT+GGG | + | chr1_1:1718647-1718666 | None:intergenic | 20.0% |
| !! | AGGAAAAGAAAATACATAAA+TGG | + | chr1_1:1718648-1718667 | None:intergenic | 20.0% |
| !!! | ATGTAGTATCATACAAATTT+TGG | + | chr1_1:1718810-1718829 | None:intergenic | 20.0% |
| !!! | TTTTATATGATTTAAAAGGG+TGG | + | chr1_1:1719690-1719709 | None:intergenic | 20.0% |
| !! | CATTTCATTCAATTAACTAT+TGG | + | chr1_1:1720444-1720463 | None:intergenic | 20.0% |
| !!! | TTCACCATAATTAATTTGAA+TGG | - | chr1_1:1720658-1720677 | Msa0000570:intron | 20.0% |
| !!! | TCACCATAATTAATTTGAAT+GGG | - | chr1_1:1720659-1720678 | Msa0000570:intron | 20.0% |
| !! | ATAAATAGAGCATAATATAG+GGG | + | chr1_1:1720707-1720726 | None:intergenic | 20.0% |
| !! | CATAAATAGAGCATAATATA+GGG | + | chr1_1:1720708-1720727 | None:intergenic | 20.0% |
| ! | GTAATTGAGCAATGAAATTA+GGG | + | chr1_1:1715954-1715973 | None:intergenic | 25.0% |
| ! | AGTAATTGAGCAATGAAATT+AGG | + | chr1_1:1715955-1715974 | None:intergenic | 25.0% |
| ! | TTCACATTACATTACATTAC+AGG | - | chr1_1:1716004-1716023 | Msa0000570:three_prime_UTR | 25.0% |
| ! | TCACATTACATTACATTACA+GGG | - | chr1_1:1716005-1716024 | Msa0000570:three_prime_UTR | 25.0% |
| ! | AGTTGCATAATCGTATTTAT+AGG | + | chr1_1:1716063-1716082 | None:intergenic | 25.0% |
| ! | AGATAAATAACAGAAGGAAT+TGG | + | chr1_1:1716203-1716222 | None:intergenic | 25.0% |
| ! | TGAATGAGATAAATAACAGA+AGG | + | chr1_1:1716209-1716228 | None:intergenic | 25.0% |
| !!! | TGTTATTTCTAGGCTTTTTT+TGG | - | chr1_1:1716530-1716549 | Msa0000570:intron | 25.0% |
| !!! | GTTATTTCTAGGCTTTTTTT+GGG | - | chr1_1:1716531-1716550 | Msa0000570:intron | 25.0% |
| !!! | TTATTTCTAGGCTTTTTTTG+GGG | - | chr1_1:1716532-1716551 | Msa0000570:intron | 25.0% |
| !! | GAATTTGAGAAGTACATTAT+TGG | - | chr1_1:1716885-1716904 | Msa0000570:intron | 25.0% |
| !! | AGAAGTACATTATTGGATTA+AGG | - | chr1_1:1716892-1716911 | Msa0000570:intron | 25.0% |
| ! | TTTCTCTATTAACCAAATGA+AGG | + | chr1_1:1717018-1717037 | None:intergenic | 25.0% |
| !! | TTTTATGCTTATTTACTTGG+GGG | + | chr1_1:1717068-1717087 | None:intergenic | 25.0% |
| ! | ACTTTGTATAAAACAGCAAA+GGG | + | chr1_1:1717334-1717353 | None:intergenic | 25.0% |
| ! | AACTTTGTATAAAACAGCAA+AGG | + | chr1_1:1717335-1717354 | None:intergenic | 25.0% |
| ! | TATTGAGATGGAATCTATAA+TGG | - | chr1_1:1717407-1717426 | Msa0000570:CDS | 25.0% |
| ! | ATAGTTGAAAAGGGAAAAAA+TGG | + | chr1_1:1717727-1717746 | None:intergenic | 25.0% |
| ! | TATTCTACTGTTGAATTACA+TGG | - | chr1_1:1717817-1717836 | Msa0000570:intron | 25.0% |
| !!! | TTTTAGTCGTCAATTTTTTC+TGG | - | chr1_1:1717860-1717879 | Msa0000570:intron | 25.0% |
| ! | AAAAAAGCTGAAAATATAGG+GGG | + | chr1_1:1718012-1718031 | None:intergenic | 25.0% |
| ! | ACATTGCTGTAAAACAAAAT+GGG | - | chr1_1:1718119-1718138 | Msa0000570:intron | 25.0% |
| ! | AGAGTATACAAATTTGACTA+TGG | - | chr1_1:1718196-1718215 | Msa0000570:CDS | 25.0% |
| ! | ACATGCTGATAATATTGTAA+AGG | - | chr1_1:1718446-1718465 | Msa0000570:intron | 25.0% |
| ! | AATTAACTTTAATGTGACAC+TGG | - | chr1_1:1718587-1718606 | Msa0000570:intron | 25.0% |
| ! | CATATGATTATATCATCATG+TGG | + | chr1_1:1718911-1718930 | None:intergenic | 25.0% |
| !!! | ATCATATGATGTTGTTTTAC+AGG | - | chr1_1:1718923-1718942 | Msa0000570:intron | 25.0% |
| !!! | AACGAATGTTGTTACTTTTT+TGG | - | chr1_1:1719077-1719096 | Msa0000570:CDS | 25.0% |
| ! | TCATCTGATTTAACTGTTAA+TGG | + | chr1_1:1719288-1719307 | None:intergenic | 25.0% |
| ! | TTGATTAAACAAGATTGTTG+CGG | - | chr1_1:1719530-1719549 | Msa0000570:intron | 25.0% |
| ! | CCAATATATTTAAACTGAAC+TGG | + | chr1_1:1719913-1719932 | None:intergenic | 25.0% |
| ! | CCAGTTCAGTTTAAATATAT+TGG | - | chr1_1:1719910-1719929 | Msa0000570:intron | 25.0% |
| ! | AGCAGGAAATAACATATAAT+CGG | + | chr1_1:1719962-1719981 | None:intergenic | 25.0% |
| ! | AGTCTTAAAAACATGTATAG+TGG | - | chr1_1:1719996-1720015 | Msa0000570:intron | 25.0% |
| ! | TTGCTTACAAGTAAAATAAC+AGG | + | chr1_1:1720195-1720214 | None:intergenic | 25.0% |
| ! | CATTCAATTAACTATTGGAT+GGG | + | chr1_1:1720439-1720458 | None:intergenic | 25.0% |
| ! | TCATTCAATTAACTATTGGA+TGG | + | chr1_1:1720440-1720459 | None:intergenic | 25.0% |
| !! | CACCATAATTAATTTGAATG+GGG | - | chr1_1:1720660-1720679 | Msa0000570:intron | 25.0% |
| ! | TACCCCATTCAAATTAATTA+TGG | + | chr1_1:1720665-1720684 | None:intergenic | 25.0% |
| ! | CCATAAATAGAGCATAATAT+AGG | + | chr1_1:1720709-1720728 | None:intergenic | 25.0% |
| ! | CCTATATTATGCTCTATTTA+TGG | - | chr1_1:1720706-1720725 | Msa0000570:intron | 25.0% |
| ! | TCTATTTATGGCTGTATTAA+TGG | - | chr1_1:1720718-1720737 | Msa0000570:intron | 25.0% |
| ! | CTATTTATGGCTGTATTAAT+GGG | - | chr1_1:1720719-1720738 | Msa0000570:intron | 25.0% |
| ! | TCTCAGTTTAAAGAGATAAT+AGG | + | chr1_1:1720767-1720786 | None:intergenic | 25.0% |
| ! | CTATTCTTCATTGTATTCAT+AGG | + | chr1_1:1720826-1720845 | None:intergenic | 25.0% |
| ATCGTATTTATAGGATCCAT+TGG | + | chr1_1:1716054-1716073 | None:intergenic | 30.0% | |
| ACTTCCACTTATCAGATTAT+GGG | - | chr1_1:1716266-1716285 | Msa0000570:three_prime_UTR | 30.0% | |
| ATTACCCATAATCTGATAAG+TGG | + | chr1_1:1716273-1716292 | None:intergenic | 30.0% | |
| AATTTGAAGATTGTTACCAC+CGG | - | chr1_1:1716290-1716309 | Msa0000570:three_prime_UTR | 30.0% | |
| AATGCACCTGAATAATATTC+CGG | + | chr1_1:1716312-1716331 | None:intergenic | 30.0% | |
| CAATAGTCTTTGCAAAATCA+CGG | + | chr1_1:1716408-1716427 | None:intergenic | 30.0% | |
| ! | TGATTTTGCAAAGACTATTG+TGG | - | chr1_1:1716408-1716427 | Msa0000570:intron | 30.0% |
| !! | GATGTTAGACTGTTATTTCT+AGG | - | chr1_1:1716520-1716539 | Msa0000570:intron | 30.0% |
| GTTGTACGAAAATGATACTA+TGG | + | chr1_1:1716672-1716691 | None:intergenic | 30.0% | |
| CGTACAACATAAATGATTTC+TGG | - | chr1_1:1716684-1716703 | Msa0000570:intron | 30.0% | |
| ! | CAACATAAATGATTTCTGGA+AGG | - | chr1_1:1716688-1716707 | Msa0000570:intron | 30.0% |
| TACATAGTTTCAGTTATAGG+AGG | + | chr1_1:1716750-1716769 | None:intergenic | 30.0% | |
| GCATACATAGTTTCAGTTAT+AGG | + | chr1_1:1716753-1716772 | None:intergenic | 30.0% | |
| TAATAGAGAAAGAACCTTTC+AGG | - | chr1_1:1717027-1717046 | Msa0000570:intron | 30.0% | |
| AATAGAGAAAGAACCTTTCA+GGG | - | chr1_1:1717028-1717047 | Msa0000570:intron | 30.0% | |
| TTTATGCTTATTTACTTGGG+GGG | + | chr1_1:1717067-1717086 | None:intergenic | 30.0% | |
| AACTTGCATGTTAAGTTACA+TGG | - | chr1_1:1717202-1717221 | Msa0000570:intron | 30.0% | |
| ACTTGCATGTTAAGTTACAT+GGG | - | chr1_1:1717203-1717222 | Msa0000570:intron | 30.0% | |
| TTAAGAATAGATGCCCTAAA+TGG | - | chr1_1:1717249-1717268 | Msa0000570:intron | 30.0% | |
| !!! | TGTTTTTTGGGTCAGTATAT+TGG | - | chr1_1:1717357-1717376 | Msa0000570:CDS | 30.0% |
| !!! | GTTTTTTGGGTCAGTATATT+GGG | - | chr1_1:1717358-1717377 | Msa0000570:CDS | 30.0% |
| CAATAACATCTTGAACCATA+GGG | + | chr1_1:1717392-1717411 | None:intergenic | 30.0% | |
| TCAATAACATCTTGAACCAT+AGG | + | chr1_1:1717393-1717412 | None:intergenic | 30.0% | |
| !!! | ATGGTTATTGTTTTAGGTCA+AGG | - | chr1_1:1717426-1717445 | Msa0000570:intron | 30.0% |
| !!! | TGGTTATTGTTTTAGGTCAA+GGG | - | chr1_1:1717427-1717446 | Msa0000570:intron | 30.0% |
| ! | GTTCACTTGATAGTTGAAAA+GGG | + | chr1_1:1717736-1717755 | None:intergenic | 30.0% |
| ! | TGTTCACTTGATAGTTGAAA+AGG | + | chr1_1:1717737-1717756 | None:intergenic | 30.0% |
| TTTCAACTATCAAGTGAACA+TGG | - | chr1_1:1717737-1717756 | Msa0000570:intron | 30.0% | |
| !!! | CTCTATTTTCATGTTGACTT+AGG | - | chr1_1:1717785-1717804 | Msa0000570:intron | 30.0% |
| AGTTGAATTTCCACTATTGT+TGG | - | chr1_1:1717951-1717970 | Msa0000570:intron | 30.0% | |
| TCATGTTTATGTTATGTCAC+TGG | + | chr1_1:1717982-1718001 | None:intergenic | 30.0% | |
| AAAAAGCTGAAAATATAGGG+GGG | + | chr1_1:1718011-1718030 | None:intergenic | 30.0% | |
| ! | AGCAATGTGAATTTGGTTTA+CGG | + | chr1_1:1718107-1718126 | None:intergenic | 30.0% |
| ! | GTTTTACAGCAATGTGAATT+TGG | + | chr1_1:1718114-1718133 | None:intergenic | 30.0% |
| CACATTGCTGTAAAACAAAA+TGG | - | chr1_1:1718118-1718137 | Msa0000570:intron | 30.0% | |
| ! | TTAAATGGGTTTCTTTCTAC+AGG | - | chr1_1:1718259-1718278 | Msa0000570:CDS | 30.0% |
| !! | GTTTGGTTCAATTTTCAATC+TGG | - | chr1_1:1718281-1718300 | Msa0000570:CDS | 30.0% |
| TTAGGTTTATTCTACATCCA+TGG | - | chr1_1:1718702-1718721 | Msa0000570:intron | 30.0% | |
| !!! | TACAAATTTTGGTCTTGCTT+GGG | + | chr1_1:1718799-1718818 | None:intergenic | 30.0% |
| !!! | ATACAAATTTTGGTCTTGCT+TGG | + | chr1_1:1718800-1718819 | None:intergenic | 30.0% |
| AATGATTTGACCTCAATCTT+AGG | + | chr1_1:1718859-1718878 | None:intergenic | 30.0% | |
| ! | TATCTAAGAGCATATTTGGT+GGG | + | chr1_1:1719263-1719282 | None:intergenic | 30.0% |
| ! | ATATCTAAGAGCATATTTGG+TGG | + | chr1_1:1719264-1719283 | None:intergenic | 30.0% |
| TCATTGAAGTTTCTGTTGAT+CGG | - | chr1_1:1719319-1719338 | Msa0000570:intron | 30.0% | |
| TAGAAATGTCAGATGCTATA+TGG | + | chr1_1:1719463-1719482 | None:intergenic | 30.0% | |
| ATATCGTACCATTAAATCAG+AGG | + | chr1_1:1719745-1719764 | None:intergenic | 30.0% | |
| CTTGCATGCATTATTCTTTA+TGG | - | chr1_1:1719831-1719850 | Msa0000570:intron | 30.0% | |
| !!! | AGATCTTGCTGTTTTTATTC+TGG | - | chr1_1:1719870-1719889 | Msa0000570:intron | 30.0% |
| !!! | GATCTTGCTGTTTTTATTCT+GGG | - | chr1_1:1719871-1719890 | Msa0000570:intron | 30.0% |
| !!! | ACATGTTTTTAAGACTGTGA+TGG | + | chr1_1:1719992-1720011 | None:intergenic | 30.0% |
| !! | AAATCAATTTTAACGCAGAC+AGG | + | chr1_1:1720067-1720086 | None:intergenic | 30.0% |
| ATGAGAACCAAAACTATCAA+TGG | + | chr1_1:1720219-1720238 | None:intergenic | 30.0% | |
| GAATATCATTTCAATCTGCA+TGG | - | chr1_1:1720338-1720357 | Msa0000570:intron | 30.0% | |
| AAAACGTGGTTTACTCAATT+AGG | - | chr1_1:1720467-1720486 | Msa0000570:CDS | 30.0% | |
| AGGTAGAAATGTAGAAATGT+AGG | + | chr1_1:1720609-1720628 | None:intergenic | 30.0% | |
| TACATTTCTACATTTCTACC+TGG | - | chr1_1:1720608-1720627 | Msa0000570:intron | 30.0% | |
| CTGAGAAATGTCTACTAATT+TGG | - | chr1_1:1720781-1720800 | Msa0000570:CDS | 30.0% | |
| TCTTCATTGTATTCATAGGA+AGG | + | chr1_1:1720822-1720841 | None:intergenic | 30.0% | |
| TTCTTCTTCTTCTTCAGATC+CGG | + | chr1_1:1715859-1715878 | None:intergenic | 35.0% | |
| !! | CTGTGTCAAGTTTGTTACTT+TGG | - | chr1_1:1716114-1716133 | Msa0000570:three_prime_UTR | 35.0% |
| !! | GTCAAGTTTGTTACTTTGGA+AGG | - | chr1_1:1716118-1716137 | Msa0000570:three_prime_UTR | 35.0% |
| CACTTCCACTTATCAGATTA+TGG | - | chr1_1:1716265-1716284 | Msa0000570:three_prime_UTR | 35.0% | |
| TTACCACCGGAATATTATTC+AGG | - | chr1_1:1716303-1716322 | Msa0000570:three_prime_UTR | 35.0% | |
| TTCATGATCAAGTGCATGTT+TGG | - | chr1_1:1716347-1716366 | Msa0000570:intron | 35.0% | |
| CAAGTGCATGTTTGGTATTA+TGG | - | chr1_1:1716355-1716374 | Msa0000570:intron | 35.0% | |
| TGCATGTTTGGTATTATGGT+GGG | - | chr1_1:1716359-1716378 | Msa0000570:intron | 35.0% | |
| ! | TTTTGCAAAGACTATTGTGG+CGG | - | chr1_1:1716411-1716430 | Msa0000570:intron | 35.0% |
| ! | ATAATGTAGTACCTGACTTG+TGG | + | chr1_1:1716613-1716632 | None:intergenic | 35.0% |
| AGTCAGGTACTACATTATGT+CGG | - | chr1_1:1716615-1716634 | Msa0000570:intron | 35.0% | |
| ! | GTAAACTGTAGAAGAAGTAC+AGG | + | chr1_1:1716721-1716740 | None:intergenic | 35.0% |
| TAACTGAAACTATGTATGCG+AGG | - | chr1_1:1716754-1716773 | Msa0000570:intron | 35.0% | |
| ATAGAGAAAGAACCTTTCAG+GGG | - | chr1_1:1717029-1717048 | Msa0000570:intron | 35.0% | |
| ! | TTGTTGCATTTGAGACACTT+TGG | + | chr1_1:1717104-1717123 | None:intergenic | 35.0% |
| AATTGTGATGTGGCCATTTA+GGG | + | chr1_1:1717265-1717284 | None:intergenic | 35.0% | |
| TAATTGTGATGTGGCCATTT+AGG | + | chr1_1:1717266-1717285 | None:intergenic | 35.0% | |
| GAATTCGTGTAATTGTGATG+TGG | + | chr1_1:1717275-1717294 | None:intergenic | 35.0% | |
| TATTGGGAAAATCATCCCTA+TGG | - | chr1_1:1717374-1717393 | Msa0000570:CDS | 35.0% | |
| GGTTCAAGATGTTATTGAGA+TGG | - | chr1_1:1717395-1717414 | Msa0000570:CDS | 35.0% | |
| AAAACAACGACAGCTTATAC+TGG | - | chr1_1:1717569-1717588 | Msa0000570:intron | 35.0% | |
| !!! | TTCTGGTTTTTGTGTGTGAT+AGG | - | chr1_1:1717877-1717896 | Msa0000570:CDS | 35.0% |
| !!! | TCTGGTTTTTGTGTGTGATA+GGG | - | chr1_1:1717878-1717897 | Msa0000570:CDS | 35.0% |
| ACTGGATATTCCAACAATAG+TGG | + | chr1_1:1717964-1717983 | None:intergenic | 35.0% | |
| ! | CAATGTGAATTTGGTTTACG+GGG | + | chr1_1:1718105-1718124 | None:intergenic | 35.0% |
| ! | GCAATGTGAATTTGGTTTAC+GGG | + | chr1_1:1718106-1718125 | None:intergenic | 35.0% |
| CAGTGTATCCATTGAATATG+CGG | + | chr1_1:1718362-1718381 | None:intergenic | 35.0% | |
| !! | TGGTTGGTGGTATTAAATCT+AGG | - | chr1_1:1718390-1718409 | Msa0000570:intron | 35.0% |
| !! | GGTTGGTGGTATTAAATCTA+GGG | - | chr1_1:1718391-1718410 | Msa0000570:intron | 35.0% |
| ! | GTATTAAATCTAGGGTCTAC+TGG | - | chr1_1:1718399-1718418 | Msa0000570:intron | 35.0% |
| ACTAACAGTTAGGGAGAAAA+AGG | + | chr1_1:1718668-1718687 | None:intergenic | 35.0% | |
| TAGTTGTGTCTGCTTTCTTT+AGG | - | chr1_1:1718684-1718703 | Msa0000570:intron | 35.0% | |
| TGTAAATTTACCTGCAGTGT+AGG | + | chr1_1:1718775-1718794 | None:intergenic | 35.0% | |
| ACCTCAATCTTAGGACATAA+GGG | + | chr1_1:1718850-1718869 | None:intergenic | 35.0% | |
| TAAACTACAGCAAACAGCTT+TGG | + | chr1_1:1718953-1718972 | None:intergenic | 35.0% | |
| ! | ATCTAAGAGCATATTTGGTG+GGG | + | chr1_1:1719262-1719281 | None:intergenic | 35.0% |
| ! | GGCATATCTAAGAGCATATT+TGG | + | chr1_1:1719267-1719286 | None:intergenic | 35.0% |
| GACATCTGAATACTATGCTT+TGG | - | chr1_1:1719365-1719384 | Msa0000570:intron | 35.0% | |
| ! | CTACTACATGGGTTTTTGTA+GGG | + | chr1_1:1719642-1719661 | None:intergenic | 35.0% |
| !! | AAGCAAGCCATTGATAGTTT+TGG | - | chr1_1:1720209-1720228 | Msa0000570:intron | 35.0% |
| ! | GGTTCTCATTATTTTCCTGT+TGG | - | chr1_1:1720230-1720249 | Msa0000570:intron | 35.0% |
| !!! | TATTTTCCTGTTGGCTCTAA+AGG | - | chr1_1:1720239-1720258 | Msa0000570:intron | 35.0% |
| !! | AAAATACCTTTAGAGCCAAC+AGG | + | chr1_1:1720248-1720267 | None:intergenic | 35.0% |
| AGGAAAAACCTGGGAAAAAA+GGG | + | chr1_1:1720277-1720296 | None:intergenic | 35.0% | |
| TAGGAAAAACCTGGGAAAAA+AGG | + | chr1_1:1720278-1720297 | None:intergenic | 35.0% | |
| TGAATGAAATGCACAAAACG+TGG | - | chr1_1:1720453-1720472 | Msa0000570:CDS | 35.0% | |
| AAAGACTTTGCCTAAATCCA+AGG | + | chr1_1:1720500-1720519 | None:intergenic | 35.0% | |
| GTTACTGCCCAAATAAACAT+TGG | - | chr1_1:1720546-1720565 | Msa0000570:CDS | 35.0% | |
| TAGAGGGCCAATGTTTATTT+GGG | + | chr1_1:1720556-1720575 | None:intergenic | 35.0% | |
| ATAGAGGGCCAATGTTTATT+TGG | + | chr1_1:1720557-1720576 | None:intergenic | 35.0% | |
| TTGACTTCTTGTGTCATAGA+GGG | + | chr1_1:1720572-1720591 | None:intergenic | 35.0% | |
| TTTCTACATTTCTACCTGGT+TGG | - | chr1_1:1720612-1720631 | Msa0000570:intron | 35.0% | |
| TGTATTCATAGGAAGGAGAT+AGG | + | chr1_1:1720815-1720834 | None:intergenic | 35.0% | |
| TTTAGACTCGTCTTCGTTAC+TGG | - | chr1_1:1715814-1715833 | Msa0000570:three_prime_UTR | 40.0% | |
| TTAGACTCGTCTTCGTTACT+GGG | - | chr1_1:1715815-1715834 | Msa0000570:three_prime_UTR | 40.0% | |
| AGAAGAAGAAGAAGATGCAG+TGG | - | chr1_1:1715866-1715885 | Msa0000570:three_prime_UTR | 40.0% | |
| ACAACCCTATCACAAACCAA+TGG | - | chr1_1:1716035-1716054 | Msa0000570:three_prime_UTR | 40.0% | |
| !! | GGATCCATTGGTTTGTGATA+GGG | + | chr1_1:1716042-1716061 | None:intergenic | 40.0% |
| !! | AGGATCCATTGGTTTGTGAT+AGG | + | chr1_1:1716043-1716062 | None:intergenic | 40.0% |
| TTGAAAACTTCGGCGAGAAA+TGG | + | chr1_1:1716089-1716108 | None:intergenic | 40.0% | |
| CACAGCAAGCTTGAAAACTT+CGG | + | chr1_1:1716099-1716118 | None:intergenic | 40.0% | |
| ACCATTGCCAAAGATGACAA+CGG | - | chr1_1:1716154-1716173 | Msa0000570:three_prime_UTR | 40.0% | |
| GTGCATGTTTGGTATTATGG+TGG | - | chr1_1:1716358-1716377 | Msa0000570:intron | 40.0% | |
| TAGTGAGTTTGCCAGAATCA+CGG | + | chr1_1:1716441-1716460 | None:intergenic | 40.0% | |
| !!! | TTTCTAGGCTTTTTTTGGGG+AGG | - | chr1_1:1716535-1716554 | Msa0000570:intron | 40.0% |
| ! | CTGTAGAAGAAGTACAGGAA+AGG | + | chr1_1:1716716-1716735 | None:intergenic | 40.0% |
| GAAGGCAGGAAGCAAATATT+CGG | + | chr1_1:1716937-1716956 | None:intergenic | 40.0% | |
| ! | AGAACACTGTGGTCTTAGAA+AGG | - | chr1_1:1716962-1716981 | Msa0000570:intron | 40.0% |
| CACGTGTATGAACCTTCATT+TGG | - | chr1_1:1717003-1717022 | Msa0000570:intron | 40.0% | |
| ATTTCTTATCCTCCCCTGAA+AGG | + | chr1_1:1717044-1717063 | None:intergenic | 40.0% | |
| ! | CAGCTCTCATGGTTATTTCA+AGG | + | chr1_1:1717164-1717183 | None:intergenic | 40.0% |
| CTTGAAATAACCATGAGAGC+TGG | - | chr1_1:1717162-1717181 | Msa0000570:intron | 40.0% | |
| !! | TGGAATTGGTGCTGAGAAAA+TGG | + | chr1_1:1717476-1717495 | None:intergenic | 40.0% |
| ! | ATTTTCTCAGCACCAATTCC+AGG | - | chr1_1:1717475-1717494 | Msa0000570:intron | 40.0% |
| CCTAACATGTAACCTGGAAT+TGG | + | chr1_1:1717490-1717509 | None:intergenic | 40.0% | |
| CCAATTCCAGGTTACATGTT+AGG | - | chr1_1:1717487-1717506 | Msa0000570:intron | 40.0% | |
| AGAACTCCTAACATGTAACC+TGG | + | chr1_1:1717496-1717515 | None:intergenic | 40.0% | |
| CAAATCTCTAGATAGCCATG+TGG | - | chr1_1:1717644-1717663 | Msa0000570:intron | 40.0% | |
| !! | CTGGTTTTTGTGTGTGATAG+GGG | - | chr1_1:1717879-1717898 | Msa0000570:CDS | 40.0% |
| ! | TGACAAGCGTTGCTTAATCA+TGG | - | chr1_1:1718148-1718167 | Msa0000570:intron | 40.0% |
| TGGGTTTCTTTCTACAGGTT+TGG | - | chr1_1:1718264-1718283 | Msa0000570:CDS | 40.0% | |
| CAATCTGGCAAAGCTTATTG+CGG | - | chr1_1:1718296-1718315 | Msa0000570:CDS | 40.0% | |
| CTTATTGCGGATGATTTCAG+AGG | - | chr1_1:1718309-1718328 | Msa0000570:CDS | 40.0% | |
| !! | TTCAGAGGTGGCTTTGAAAA+TGG | - | chr1_1:1718324-1718343 | Msa0000570:CDS | 40.0% |
| !! | TCAGAGGTGGCTTTGAAAAT+GGG | - | chr1_1:1718325-1718344 | Msa0000570:CDS | 40.0% |
| ATGGATACACTGTCACTACT+TGG | - | chr1_1:1718370-1718389 | Msa0000570:intron | 40.0% | |
| ATACACTGTCACTACTTGGT+TGG | - | chr1_1:1718374-1718393 | Msa0000570:intron | 40.0% | |
| AAGCGCCACATCATAGTATA+AGG | - | chr1_1:1718621-1718640 | Msa0000570:intron | 40.0% | |
| ! | ATGGGCCTTATACTATGATG+TGG | + | chr1_1:1718629-1718648 | None:intergenic | 40.0% |
| GCAGACACAACTAACAGTTA+GGG | + | chr1_1:1718677-1718696 | None:intergenic | 40.0% | |
| AGCAGACACAACTAACAGTT+AGG | + | chr1_1:1718678-1718697 | None:intergenic | 40.0% | |
| TCAATCTTAGGACATAAGGG+GGG | + | chr1_1:1718847-1718866 | None:intergenic | 40.0% | |
| CTCAATCTTAGGACATAAGG+GGG | + | chr1_1:1718848-1718867 | None:intergenic | 40.0% | |
| CCTCAATCTTAGGACATAAG+GGG | + | chr1_1:1718849-1718868 | None:intergenic | 40.0% | |
| GACCTCAATCTTAGGACATA+AGG | + | chr1_1:1718851-1718870 | None:intergenic | 40.0% | |
| TCATTCTACTGCACGTAGTT+TGG | - | chr1_1:1718874-1718893 | Msa0000570:intron | 40.0% | |
| TTCTCACTGCAGCTATTCTT+AGG | - | chr1_1:1719198-1719217 | Msa0000570:intron | 40.0% | |
| TAAACAAGATTGTTGCGGTG+TGG | - | chr1_1:1719535-1719554 | Msa0000570:intron | 40.0% | |
| ! | CCTACTACATGGGTTTTTGT+AGG | + | chr1_1:1719643-1719662 | None:intergenic | 40.0% |
| CCTACAAAAACCCATGTAGT+AGG | - | chr1_1:1719640-1719659 | Msa0000570:intron | 40.0% | |
| CCATTAAATCAGAGGACACA+GGG | + | chr1_1:1719737-1719756 | None:intergenic | 40.0% | |
| ACCATTAAATCAGAGGACAC+AGG | + | chr1_1:1719738-1719757 | None:intergenic | 40.0% | |
| TGAGTACGAGAGAAAGAGAA+AGG | - | chr1_1:1719786-1719805 | Msa0000570:intron | 40.0% | |
| GAGTACGAGAGAAAGAGAAA+GGG | - | chr1_1:1719787-1719806 | Msa0000570:intron | 40.0% | |
| AGTACGAGAGAAAGAGAAAG+GGG | - | chr1_1:1719788-1719807 | Msa0000570:intron | 40.0% | |
| ! | ATATAATCGGCTCTCAAAGC+TGG | + | chr1_1:1719949-1719968 | None:intergenic | 40.0% |
| ACTGTGATGGTAGAATTAGC+AGG | + | chr1_1:1719979-1719998 | None:intergenic | 40.0% | |
| !!! | TTTCAACTCCCTTTTTTCCC+AGG | - | chr1_1:1720266-1720285 | Msa0000570:intron | 40.0% |
| TTTCAATCTGCATGGTTCAG+CGG | - | chr1_1:1720346-1720365 | Msa0000570:intron | 40.0% | |
| !! | TTCAGCGGTTTCTAAAGTGT+GGG | - | chr1_1:1720361-1720380 | Msa0000570:CDS | 40.0% |
| AAAGTGTGGGCATCTTCATT+TGG | - | chr1_1:1720374-1720393 | Msa0000570:CDS | 40.0% | |
| CTCAATTAGGATGTTGTCCT+TGG | - | chr1_1:1720480-1720499 | Msa0000570:CDS | 40.0% | |
| AGGATGTTGTCCTTGGATTT+AGG | - | chr1_1:1720487-1720506 | Msa0000570:CDS | 40.0% | |
| ! | AGTCTTTAACTTCTCTCTGC+TGG | - | chr1_1:1720513-1720532 | Msa0000570:CDS | 40.0% |
| CTTGACTTCTTGTGTCATAG+AGG | + | chr1_1:1720573-1720592 | None:intergenic | 40.0% | |
| TGGCTGTATTAATGGGATGA+AGG | - | chr1_1:1720726-1720745 | Msa0000570:CDS | 40.0% | |
| GGCTGTATTAATGGGATGAA+GGG | - | chr1_1:1720727-1720746 | Msa0000570:CDS | 40.0% | |
| GAAGAAGATGCAGTGGTACT+TGG | - | chr1_1:1715873-1715892 | Msa0000570:three_prime_UTR | 45.0% | |
| TCCGTTGTCATCTTTGGCAA+TGG | + | chr1_1:1716158-1716177 | None:intergenic | 45.0% | |
| TTCCACTCCGTTGTCATCTT+TGG | + | chr1_1:1716164-1716183 | None:intergenic | 45.0% | |
| GCACCTGAATAATATTCCGG+TGG | + | chr1_1:1716309-1716328 | None:intergenic | 45.0% | |
| !! | TGGTATTATGGTGGGTTTGC+AGG | - | chr1_1:1716367-1716386 | Msa0000570:intron | 45.0% |
| GCTTTCAAACTTGCAGTGGA+TGG | - | chr1_1:1716560-1716579 | Msa0000570:intron | 45.0% | |
| TCCAACAGCCAACAACACAA+TGG | + | chr1_1:1716586-1716605 | None:intergenic | 45.0% | |
| TGTTGGAACAACCACAAGTC+AGG | - | chr1_1:1716599-1716618 | Msa0000570:intron | 45.0% | |
| TAAGACCACAGTGTTCTCAG+AGG | + | chr1_1:1716959-1716978 | None:intergenic | 45.0% | |
| GCAAGTTCATTGCATCTCTC+AGG | + | chr1_1:1717189-1717208 | None:intergenic | 45.0% | |
| !!! | TTGTTTTAGGTCAAGGGCTG+TGG | - | chr1_1:1717433-1717452 | Msa0000570:intron | 45.0% |
| TGCTGAGAAAATGGAGTCAC+AGG | + | chr1_1:1717467-1717486 | None:intergenic | 45.0% | |
| CAATGGCAAATGTGTCCACA+TGG | + | chr1_1:1717662-1717681 | None:intergenic | 45.0% | |
| ATTGCGGATGATTTCAGAGG+TGG | - | chr1_1:1718312-1718331 | Msa0000570:CDS | 45.0% | |
| !! | CTACTGGTCTTCTGGTTTCA+TGG | - | chr1_1:1718415-1718434 | Msa0000570:intron | 45.0% |
| CAACTTCAAACCTACACTGC+AGG | - | chr1_1:1718762-1718781 | Msa0000570:intron | 45.0% | |
| TAGGACATAAGGGGGGAATA+TGG | + | chr1_1:1718840-1718859 | None:intergenic | 45.0% | |
| CCCCTTATGTCCTAAGATTG+AGG | - | chr1_1:1718846-1718865 | Msa0000570:intron | 45.0% | |
| CCTGTCAGCAATGACATGAA+AGG | + | chr1_1:1719147-1719166 | None:intergenic | 45.0% | |
| CCTTTCATGTCATTGCTGAC+AGG | - | chr1_1:1719144-1719163 | Msa0000570:CDS | 45.0% | |
| CATTGCTGACAGGCTATAAC+TGG | - | chr1_1:1719154-1719173 | Msa0000570:CDS | 45.0% | |
| ! | TTTTTCTTGACACCGACCGA+CGG | - | chr1_1:1719597-1719616 | Msa0000570:intron | 45.0% |
| GATGTACATAGCACTACCGT+CGG | + | chr1_1:1719616-1719635 | None:intergenic | 45.0% | |
| AAACCCATGTAGTAGGACTG+TGG | - | chr1_1:1719647-1719666 | Msa0000570:intron | 45.0% | |
| AACCCATGTAGTAGGACTGT+GGG | - | chr1_1:1719648-1719667 | Msa0000570:intron | 45.0% | |
| CCCTGTGTCCTCTGATTTAA+TGG | - | chr1_1:1719734-1719753 | Msa0000570:intron | 45.0% | |
| GTACGAGAGAAAGAGAAAGG+GGG | - | chr1_1:1719789-1719808 | Msa0000570:intron | 45.0% | |
| AGAGAAAGAGAAAGGGGGAA+GGG | - | chr1_1:1719794-1719813 | Msa0000570:intron | 45.0% | |
| !! | GTTCAGCGGTTTCTAAAGTG+TGG | - | chr1_1:1720360-1720379 | Msa0000570:CDS | 45.0% |
| !! | TTCTCTCTGCTGGTACTGAT+AGG | - | chr1_1:1720523-1720542 | Msa0000570:CDS | 45.0% |
| !! | TCTCTCTGCTGGTACTGATA+GGG | - | chr1_1:1720524-1720543 | Msa0000570:CDS | 45.0% |
| GAAATGTAGGCTACAGATCG+TGG | + | chr1_1:1720596-1720615 | None:intergenic | 45.0% | |
| AGTTTGTACAGCAACCAACC+AGG | + | chr1_1:1720629-1720648 | None:intergenic | 45.0% | |
| !!! | ATATTTTATATGATTTAAAA+GGG | + | chr1_1:1719693-1719712 | None:intergenic | 5.0% |
| !!! | TATATTTTATATGATTTAAA+AGG | + | chr1_1:1719694-1719713 | None:intergenic | 5.0% |
| GCGAGTGAGTGTATCGTATC+CGG | - | chr1_1:1715837-1715856 | Msa0000570:three_prime_UTR | 50.0% | |
| GACCTGAGAACTGGTGAGAA+CGG | + | chr1_1:1715914-1715933 | None:intergenic | 50.0% | |
| AGAGTGAGTGACCTGAGAAC+TGG | + | chr1_1:1715923-1715942 | None:intergenic | 50.0% | |
| TGCCAAAGATGACAACGGAG+TGG | - | chr1_1:1716159-1716178 | Msa0000570:three_prime_UTR | 50.0% | |
| !! | TGGTGGGTTTGCAGGAATCA+CGG | - | chr1_1:1716375-1716394 | Msa0000570:intron | 50.0% |
| !!! | CTAGGCTTTTTTTGGGGAGG+AGG | - | chr1_1:1716538-1716557 | Msa0000570:intron | 50.0% |
| GGAGGCTTTCAAACTTGCAG+TGG | - | chr1_1:1716556-1716575 | Msa0000570:intron | 50.0% | |
| GTGGATGGCCATTGTGTTGT+TGG | - | chr1_1:1716575-1716594 | Msa0000570:intron | 50.0% | |
| ! | GCCATTGTGTTGTTGGCTGT+TGG | - | chr1_1:1716582-1716601 | Msa0000570:intron | 50.0% |
| ACCACAGTGTTCTCAGAGGA+AGG | + | chr1_1:1716955-1716974 | None:intergenic | 50.0% | |
| GAGAAAGAACCTTTCAGGGG+AGG | - | chr1_1:1717032-1717051 | Msa0000570:intron | 50.0% | |
| GCTTGTCTCTCAGCATTAGC+TGG | - | chr1_1:1717520-1717539 | Msa0000570:intron | 50.0% | |
| !! | TTGAATATGCGGTGCCACCA+GGG | + | chr1_1:1718351-1718370 | None:intergenic | 50.0% |
| !! | ATTGAATATGCGGTGCCACC+AGG | + | chr1_1:1718352-1718371 | None:intergenic | 50.0% |
| TGGTGGCACCGCATATTCAA+TGG | - | chr1_1:1718351-1718370 | Msa0000570:intron | 50.0% | |
| CACTGTCACTACTTGGTTGG+TGG | - | chr1_1:1718377-1718396 | Msa0000570:intron | 50.0% | |
| !! | TCTAGGGTCTACTGGTCTTC+TGG | - | chr1_1:1718407-1718426 | Msa0000570:intron | 50.0% |
| CATTGTCAGCAGCATTGCCA+TGG | + | chr1_1:1718722-1718741 | None:intergenic | 50.0% | |
| TTTCACCCGGGAACACTACT+AGG | + | chr1_1:1719561-1719580 | None:intergenic | 50.0% | |
| AGTAGTGTTCCCGGGTGAAA+AGG | - | chr1_1:1719561-1719580 | Msa0000570:intron | 50.0% | |
| GTAGTGTTCCCGGGTGAAAA+GGG | - | chr1_1:1719562-1719581 | Msa0000570:intron | 50.0% | |
| TAGTGTTCCCGGGTGAAAAG+GGG | - | chr1_1:1719563-1719582 | Msa0000570:intron | 50.0% | |
| ! | TCTGTTTCCCCTTTTCACCC+GGG | + | chr1_1:1719573-1719592 | None:intergenic | 50.0% |
| ! | GTCTGTTTCCCCTTTTCACC+CGG | + | chr1_1:1719574-1719593 | None:intergenic | 50.0% |
| TACATAGCACTACCGTCGGT+CGG | + | chr1_1:1719612-1719631 | None:intergenic | 50.0% | |
| CTCCCACAGTCCTACTACAT+GGG | + | chr1_1:1719653-1719672 | None:intergenic | 50.0% | |
| ACTCCCACAGTCCTACTACA+TGG | + | chr1_1:1719654-1719673 | None:intergenic | 50.0% | |
| ACTGTGGGAGTCTCATGAAC+TGG | - | chr1_1:1719663-1719682 | Msa0000570:intron | 50.0% | |
| CTGTGGGAGTCTCATGAACT+GGG | - | chr1_1:1719664-1719683 | Msa0000570:intron | 50.0% | |
| GAGAGAAAGAGAAAGGGGGA+AGG | - | chr1_1:1719793-1719812 | Msa0000570:intron | 50.0% | |
| GAGAAAGAGAAAGGGGGAAG+GGG | - | chr1_1:1719795-1719814 | Msa0000570:intron | 50.0% | |
| CACCGTTCTCACCAGTTCTC+AGG | - | chr1_1:1715909-1715928 | Msa0000570:three_prime_UTR | 55.0% | |
| TGGGTTTGCAGGAATCACGG+TGG | - | chr1_1:1716378-1716397 | Msa0000570:intron | 55.0% | |
| GGGTTTGCAGGAATCACGGT+GGG | - | chr1_1:1716379-1716398 | Msa0000570:intron | 55.0% | |
| CAGTGTTCTCAGAGGAAGGC+AGG | + | chr1_1:1716951-1716970 | None:intergenic | 55.0% | |
| ! | GCCTTCCTCTGAGAACACTG+TGG | - | chr1_1:1716951-1716970 | Msa0000570:intron | 55.0% |
| TCTCTCAGGTCCAGCTCTCA+TGG | + | chr1_1:1717175-1717194 | None:intergenic | 55.0% | |
| TTAGGTCAAGGGCTGTGGAG+AGG | - | chr1_1:1717438-1717457 | Msa0000570:intron | 55.0% | |
| !! | GTGGCTTTGAAAATGGGCCC+TGG | - | chr1_1:1718331-1718350 | Msa0000570:CDS | 55.0% |
| !! | GCTTTGAAAATGGGCCCTGG+TGG | - | chr1_1:1718334-1718353 | Msa0000570:CDS | 55.0% |
| GTGTGGCCTAGTAGTGTTCC+CGG | - | chr1_1:1719552-1719571 | Msa0000570:intron | 55.0% | |
| TGTGGCCTAGTAGTGTTCCC+GGG | - | chr1_1:1719553-1719572 | Msa0000570:intron | 55.0% | |
| GTGGCGGCTCACCGTGATTC+TGG | - | chr1_1:1716427-1716446 | Msa0000570:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 1715802 | 1720848 | 1715802 | ID=Msa0000570;Name=Msa0000570 |
| chr1_1 | mRNA | 1715802 | 1720848 | 1715802 | ID=Msa0000570-mRNA-1;Parent=Msa0000570;Name=Msa0000570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.55|1|0.62|0.44|9|591|341 |
| chr1_1 | exon | 1715802 | 1716362 | 1715802 | ID=Msa0000570-mRNA-1:exon:314;Parent=Msa0000570-mRNA-1 |
| chr1_1 | exon | 1717264 | 1717440 | 1717264 | ID=Msa0000570-mRNA-1:exon:313;Parent=Msa0000570-mRNA-1 |
| chr1_1 | exon | 1717867 | 1717944 | 1717867 | ID=Msa0000570-mRNA-1:exon:312;Parent=Msa0000570-mRNA-1 |
| chr1_1 | exon | 1718183 | 1718369 | 1718183 | ID=Msa0000570-mRNA-1:exon:311;Parent=Msa0000570-mRNA-1 |
| chr1_1 | exon | 1719039 | 1719208 | 1719039 | ID=Msa0000570-mRNA-1:exon:310;Parent=Msa0000570-mRNA-1 |
| chr1_1 | exon | 1720030 | 1720074 | 1720030 | ID=Msa0000570-mRNA-1:exon:309;Parent=Msa0000570-mRNA-1 |
| chr1_1 | exon | 1720349 | 1720408 | 1720349 | ID=Msa0000570-mRNA-1:exon:308;Parent=Msa0000570-mRNA-1 |
| chr1_1 | exon | 1720415 | 1720624 | 1720415 | ID=Msa0000570-mRNA-1:exon:307;Parent=Msa0000570-mRNA-1 |
| chr1_1 | exon | 1720720 | 1720848 | 1720720 | ID=Msa0000570-mRNA-1:exon:306;Parent=Msa0000570-mRNA-1 |
| chr1_1 | CDS | 1720720 | 1720848 | 1720720 | ID=Msa0000570-mRNA-1:cds;Parent=Msa0000570-mRNA-1 |
| chr1_1 | CDS | 1720415 | 1720624 | 1720415 | ID=Msa0000570-mRNA-1:cds;Parent=Msa0000570-mRNA-1 |
| chr1_1 | CDS | 1720349 | 1720408 | 1720349 | ID=Msa0000570-mRNA-1:cds;Parent=Msa0000570-mRNA-1 |
| chr1_1 | CDS | 1720030 | 1720074 | 1720030 | ID=Msa0000570-mRNA-1:cds;Parent=Msa0000570-mRNA-1 |
| chr1_1 | CDS | 1719039 | 1719208 | 1719039 | ID=Msa0000570-mRNA-1:cds;Parent=Msa0000570-mRNA-1 |
| chr1_1 | CDS | 1718183 | 1718369 | 1718183 | ID=Msa0000570-mRNA-1:cds;Parent=Msa0000570-mRNA-1 |
| chr1_1 | CDS | 1717867 | 1717944 | 1717867 | ID=Msa0000570-mRNA-1:cds;Parent=Msa0000570-mRNA-1 |
| chr1_1 | CDS | 1717294 | 1717440 | 1717294 | ID=Msa0000570-mRNA-1:cds;Parent=Msa0000570-mRNA-1 |
| chr1_1 | three_prime_UTR | 1717264 | 1717293 | 1717264 | ID=Msa0000570-mRNA-1:three_prime_utr;Parent=Msa0000570-mRNA-1 |
| chr1_1 | three_prime_UTR | 1715802 | 1716362 | 1715802 | ID=Msa0000570-mRNA-1:three_prime_utr;Parent=Msa0000570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
