AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1092010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1092010 MtrunA17_Chr7g0215951 98.193 498 9 0 1 498 1 498 0.0 1008
Msa1092010 MtrunA17_Chr6g0452391 66.523 463 146 4 1 460 3 459 0.0 630
Msa1092010 MtrunA17_Chr6g0452371 67.171 463 143 4 1 460 5 461 0.0 627
Msa1092010 MtrunA17_Chr4g0059811 58.893 506 196 5 1 495 6 510 0.0 603
Msa1092010 MtrunA17_Chr1g0155131 61.396 487 162 8 2 485 4 467 0.0 591
Msa1092010 MtrunA17_Chr6g0452451 63.034 468 160 4 1 459 5 468 0.0 583
Msa1092010 MtrunA17_Chr2g0292561 59.414 478 173 6 2 477 7 465 0.0 577
Msa1092010 MtrunA17_Chr6g0452401 63.556 450 148 5 23 460 3 448 0.0 565
Msa1092010 MtrunA17_Chr6g0466811 60.659 455 153 6 8 460 21 451 0.0 542
Msa1092010 MtrunA17_Chr1g0155121 52.371 464 212 4 1 459 1 460 5.39e-174 499
Msa1092010 MtrunA17_Chr6g0452411 63.784 370 120 4 101 460 1 366 8.85e-162 464
Msa1092010 MtrunA17_Chr4g0072491 42.857 455 231 10 1 440 1 441 8.08e-119 358
Msa1092010 MtrunA17_Chr6g0452361 61.149 296 78 3 209 489 1 274 5.82e-118 347
Msa1092010 MtrunA17_Chr5g0404651 39.959 483 243 10 2 472 11 458 5.59e-117 353
Msa1092010 MtrunA17_Chr2g0308991 38.641 471 256 9 1 464 4 448 1.05e-110 338
Msa1092010 MtrunA17_Chr2g0315921 38.723 470 246 8 10 471 14 449 1.64e-110 335
Msa1092010 MtrunA17_Chr2g0315991 38.922 501 238 11 8 487 13 466 2.71e-110 335
Msa1092010 MtrunA17_Chr6g0452481 62.230 278 75 5 188 460 2 254 5.84e-110 328
Msa1092010 MtrunA17_Chr2g0315911 40.471 467 231 10 10 468 16 443 7.72e-109 331
Msa1092010 MtrunA17_Chr2g0315971 39.875 479 237 11 8 477 7 443 3.89e-106 332
Msa1092010 MtrunA17_Chr2g0315971 50.190 263 105 3 198 460 467 703 6.18e-80 263
Msa1092010 MtrunA17_Chr8g0372701 37.778 495 261 8 9 487 28 491 8.15e-106 325
Msa1092010 MtrunA17_Chr2g0315981 38.289 491 247 12 8 487 7 452 2.10e-103 317
Msa1092010 MtrunA17_Chr2g0316041 40.143 421 209 8 61 473 1 386 1.13e-99 307
Msa1092010 MtrunA17_Chr5g0404661 36.420 486 263 9 5 472 25 482 9.24e-94 293
Msa1092010 MtrunA17_Chr2g0316021 35.106 470 224 11 8 469 7 403 6.81e-86 271
Msa1092010 MtrunA17_Chr3g0134831 42.997 307 150 4 156 460 4 287 6.42e-81 253
Msa1092010 MtrunA17_Chr7g0276031 34.324 370 183 10 93 460 94 405 1.75e-63 213
Msa1092010 MtrunA17_Chr8g0346371 30.064 469 258 12 39 485 38 458 6.65e-62 209
Msa1092010 MtrunA17_Chr3g0127381 31.989 372 195 8 95 460 95 414 1.15e-59 204
Msa1092010 MtrunA17_Chr1g0148871 63.235 136 47 1 324 459 1 133 3.12e-50 169
Msa1092010 MtrunA17_Chr6g0452351 53.913 115 52 1 7 120 20 134 1.19e-35 129
Msa1092010 MtrunA17_Chr5g0404671 50.926 108 48 2 355 460 1 105 6.38e-30 115
Msa1092010 MtrunA17_Chr5g0404681 43.443 122 59 1 142 263 41 152 2.12e-27 107
Msa1092010 MtrunA17_Chr1g0211521 54.455 101 43 2 388 485 5 105 1.63e-24 98.2
Msa1092010 MtrunA17_Chr5g0404691 36.000 175 78 5 288 460 7 149 1.46e-20 88.6
Msa1092010 MtrunA17_Chr2g0315961 55.769 52 23 0 388 439 1 52 4.31e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1092010 AT5G40010.1 61.987 463 163 6 1 456 4 460 0.0 577
Msa1092010 AT3G28580.1 60.870 460 168 6 1 456 4 455 0.0 558
Msa1092010 AT3G28580.2 57.174 460 163 7 1 456 4 433 0.0 516
Msa1092010 AT3G28510.1 55.292 463 196 5 4 463 7 461 1.46e-179 514
Msa1092010 AT3G28610.1 52.556 489 191 10 8 481 6 468 1.35e-171 492
Msa1092010 AT3G28600.1 52.282 482 188 8 8 474 7 461 8.17e-170 488
Msa1092010 AT3G28540.2 53.947 456 202 4 4 458 7 455 2.94e-169 488
Msa1092010 AT3G28540.1 53.947 456 202 4 4 458 7 455 3.67e-169 487
Msa1092010 AT5G40000.1 49.491 491 200 12 1 474 4 463 2.84e-158 458
Msa1092010 AT3G28520.1 50.932 483 209 6 12 477 1 472 8.62e-154 447
Msa1092010 AT3G28600.2 48.133 482 169 7 8 474 7 422 7.60e-148 430
Msa1092010 AT3G28570.2 46.708 486 199 9 6 472 14 458 7.15e-145 423
Msa1092010 AT3G28570.1 46.708 486 199 9 6 472 7 451 7.76e-145 423
Msa1092010 AT5G57480.1 38.446 489 268 10 1 473 1 472 2.30e-115 350
Msa1092010 AT4G25835.1 39.030 474 268 8 1 468 1 459 1.78e-114 347
Msa1092010 AT3G50930.1 39.836 487 250 9 16 485 73 533 2.39e-112 344
Msa1092010 AT3G50940.1 38.581 451 233 7 20 463 31 444 1.49e-109 333
Msa1092010 AT2G18193.1 37.500 488 266 8 9 492 19 471 9.59e-107 327
Msa1092010 AT4G30250.1 38.382 482 268 9 1 468 1 467 2.25e-105 324
Msa1092010 AT4G30250.2 38.382 482 268 9 1 468 3 469 2.63e-105 324
Msa1092010 AT4G05380.1 38.155 477 261 7 1 472 12 459 1.78e-104 320
Msa1092010 AT5G17740.1 35.818 483 267 10 2 472 11 462 1.52e-98 307
Msa1092010 AT5G17760.1 40.376 426 198 9 64 468 72 462 1.27e-97 304
Msa1092010 AT2G18190.1 35.654 474 269 7 2 471 13 454 3.18e-97 303
Msa1092010 AT1G43910.1 38.302 483 255 10 1 468 1 455 1.18e-95 298
Msa1092010 AT5G17730.1 35.169 472 260 7 6 465 11 448 1.50e-94 295
Msa1092010 AT5G17750.1 38.859 368 182 7 71 426 55 391 3.11e-83 263
Msa1092010 AT2G46620.1 31.828 465 263 8 1 460 1 416 4.80e-74 242
Msa1092010 AT5G17760.2 39.695 262 130 5 64 308 72 322 5.33e-54 185
Msa1092010 AT3G29800.1 31.389 360 185 9 103 457 75 377 1.52e-49 176
Msa1092010 AT3G28560.1 39.908 218 111 5 4 213 7 212 2.13e-45 160
Msa1092010 AT4G05340.1 50.000 92 39 1 328 412 2 93 3.01e-20 85.9

Find 69 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACGCGGTTATTTACTTTA+TGG 0.206027 7_3:+7723823 Msa1092010:CDS
AATAGTAAGGTAACTTTATC+TGG 0.207637 7_3:+7724135 Msa1092010:CDS
GGTTCTTGTTAAGAATTATT+TGG 0.226983 7_3:+7724317 Msa1092010:CDS
GACTTCAGCTTTGAGTCTTT+TGG 0.239776 7_3:-7723353 None:intergenic
CATGATTTGTTTGATGAAAT+TGG 0.246773 7_3:+7724351 Msa1092010:CDS
TTTCATTGTGACAGTGAAAA+AGG 0.267935 7_3:+7724569 Msa1092010:CDS
AAGAAATTGCAATGAGAAAT+AGG 0.272071 7_3:+7723602 Msa1092010:CDS
GTCTTTCACCTGAGAATTCA+TGG 0.273148 7_3:-7723267 None:intergenic
GAACATTATGGTGGCTAGTA+TGG 0.297567 7_3:-7723137 None:intergenic
AGCTAAGTATGAGTGAACTA+TGG 0.321937 7_3:+7723101 None:intergenic
GAAAACAATGTGACTCCATT+TGG 0.322099 7_3:-7723680 None:intergenic
AACTTGATCCTGCTCTTATT+AGG 0.329188 7_3:+7724238 Msa1092010:CDS
AGAATTCATGGAAAGTGATT+TGG 0.342817 7_3:-7723255 None:intergenic
ATAGTAGATTTACCTGTTCC+TGG 0.352380 7_3:-7723850 None:intergenic
GTGGAAGATGTGAAGGAAAA+TGG 0.360536 7_3:+7724546 Msa1092010:CDS
TATGGCATACATGAACATTA+TGG 0.377040 7_3:-7723149 None:intergenic
TCTTGAATTAACCGCGGTTA+AGG 0.395319 7_3:+7723915 Msa1092010:CDS
CTTTATGGTCCTCCAGGAAC+AGG 0.413204 7_3:+7723838 Msa1092010:CDS
TGATGAAGAAGACTCATTCA+TGG 0.426724 7_3:+7724059 Msa1092010:CDS
TAGCCATACCAACCACTACT+TGG 0.433604 7_3:-7723649 None:intergenic
TGGAAAGTGATTTGGATGTA+AGG 0.435023 7_3:-7723247 None:intergenic
AATTTCAAGGTGTTAAACTT+TGG 0.448086 7_3:+7723437 Msa1092010:CDS
ATCACTTTCCATGAATTCTC+AGG 0.451974 7_3:+7723259 Msa1092010:CDS
GCAAGTGTCTCAAAAGTTGC+AGG 0.465004 7_3:-7723709 None:intergenic
TTTGAAGTTTAGAAATGGTA+AGG 0.467899 7_3:+7723771 Msa1092010:CDS
TTCAAGGTGTTAAACTTTGG+TGG 0.468656 7_3:+7723440 Msa1092010:CDS
TGATGAAATTGGTGATTTGT+TGG 0.479236 7_3:+7724362 Msa1092010:CDS
GAAGTCACTGATGAATTTCA+AGG 0.482518 7_3:+7723424 Msa1092010:CDS
GGTCCGCATGTGGAGGGGAG+AGG 0.484104 7_3:+7724184 Msa1092010:CDS
TATTTACTTTATGGTCCTCC+AGG 0.495610 7_3:+7723832 Msa1092010:CDS
AATCCAAGTAGTGGTTGGTA+TGG 0.510050 7_3:+7723646 Msa1092010:CDS
ATGGCTACAAACAATCCAAA+TGG 0.513174 7_3:+7723665 Msa1092010:CDS
TCAAGGTGTTAAACTTTGGT+GGG 0.519862 7_3:+7723441 Msa1092010:CDS
AAATTCTCAGCAACATCAGC+AGG 0.526229 7_3:-7724402 None:intergenic
CTTCCTGTCCTAATAAGAGC+AGG 0.535295 7_3:-7724246 None:intergenic
GGAAAGTGATTTGGATGTAA+GGG 0.538609 7_3:-7723246 None:intergenic
CAAATAATCCAAGTAGTGGT+TGG 0.539028 7_3:+7723641 Msa1092010:CDS
ATCTACTATGATAGCCGCTA+TGG 0.541351 7_3:+7723864 Msa1092010:CDS
AAAAGATAGTCAAAATCCAT+TGG 0.544634 7_3:+7723378 Msa1092010:CDS
GATCCTGCTCTTATTAGGAC+AGG 0.549073 7_3:+7724243 Msa1092010:CDS
ATCGGTAAGGCTTGGAAACG+CGG 0.549524 7_3:+7723808 Msa1092010:CDS
GAATTTGGTCCGCATGTGGA+GGG 0.552654 7_3:+7724178 Msa1092010:CDS
ACATCTTCATTCACAGACTT+AGG 0.556783 7_3:-7724429 None:intergenic
AAAAGGATATAGTTCTGTGA+TGG 0.559391 7_3:+7724586 Msa1092010:CDS
TCATCAATGCTAAGAACCAA+TGG 0.561072 7_3:-7723394 None:intergenic
ACAAGAAGTAGAAGAAGACA+AGG 0.563981 7_3:+7724506 Msa1092010:CDS
TATACAAATAATCCAAGTAG+TGG 0.565102 7_3:+7723637 Msa1092010:CDS
GCTAAGTATGAGTGAACTAT+GGG 0.567082 7_3:+7723102 None:intergenic
GGAATTTGGTCCGCATGTGG+AGG 0.574852 7_3:+7724177 Msa1092010:CDS
AGACTATCACGAAATGAAGA+TGG 0.578620 7_3:-7723187 None:intergenic
ATTTGATTCAAGCACTTGAG+AGG 0.587639 7_3:+7724469 Msa1092010:CDS
CTGCTCTTATTAGGACAGGA+AGG 0.593973 7_3:+7724247 Msa1092010:CDS
TCTTATTAGGACAGGAAGGA+TGG 0.597653 7_3:+7724251 Msa1092010:CDS
GAAGACAAGGAAGATAGTGT+AGG 0.600054 7_3:+7724519 Msa1092010:CDS
TCAAGCACTTGAGAGGAAGA+AGG 0.600486 7_3:+7724476 Msa1092010:CDS
AATTTGGTCCGCATGTGGAG+GGG 0.605621 7_3:+7724179 Msa1092010:CDS
AGTGAACTATGGGCACAACT+AGG 0.614578 7_3:+7723112 Msa1092010:CDS
AGGAACTGTGGAAGATGTGA+AGG 0.615776 7_3:+7724539 Msa1092010:CDS
TTGCAATGAGAAATAGGCAA+AGG 0.621519 7_3:+7723608 Msa1092010:CDS
AATCCTCTCCCCTCCACATG+CGG 0.622031 7_3:-7724187 None:intergenic
GGAAGATAGTGTAGGAACTG+TGG 0.624422 7_3:+7724527 Msa1092010:CDS
AAAATTGAAACTTCATCACA+TGG 0.627356 7_3:+7723472 Msa1092010:CDS
CTCAGTATTATCCTTAACCG+CGG 0.645496 7_3:-7723926 None:intergenic
AGCACTTGAGAGGAAGAAGG+TGG 0.649097 7_3:+7724479 Msa1092010:CDS
GATGGAATTTGGTCCGCATG+TGG 0.650290 7_3:+7724174 Msa1092010:CDS
GGCATACATGAACATTATGG+TGG 0.652895 7_3:-7723146 None:intergenic
GTTCATGAAATTCGCCATAG+CGG 0.682175 7_3:-7723878 None:intergenic
GTAGATTTACCTGTTCCTGG+AGG 0.701492 7_3:-7723847 None:intergenic
TTATGATCTTGAATTAACCG+CGG 0.736452 7_3:+7723909 Msa1092010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAGTAAAAATAGTA+AGG + chr7_3:7724122-7724141 Msa1092010:CDS 10.0%
!! TAATAATAGTAAAAATAGTA+AGG + chr7_3:7724122-7724141 Msa1092010:CDS 10.0%
!! AACAAAAAGATTATTATCAT+AGG + chr7_3:7724082-7724101 Msa1092010:CDS 15.0%
!! AACAAAAAGATTATTATCAT+AGG + chr7_3:7724082-7724101 Msa1092010:CDS 15.0%
!!! CATTTTTATTAATCTTCCTT+TGG - chr7_3:7724032-7724051 None:intergenic 20.0%
!! TTATTATCATAGGAAAAAAG+AGG + chr7_3:7724092-7724111 Msa1092010:CDS 20.0%
!!! GGTTTATTGAATTTTATTGA+TGG + chr7_3:7724156-7724175 Msa1092010:CDS 20.0%
!!! TGAATTTTATTGATGGAATT+TGG + chr7_3:7724163-7724182 Msa1092010:CDS 20.0%
!!! CATTTTTATTAATCTTCCTT+TGG - chr7_3:7724032-7724051 None:intergenic 20.0%
!! TTATTATCATAGGAAAAAAG+AGG + chr7_3:7724092-7724111 Msa1092010:CDS 20.0%
!!! GGTTTATTGAATTTTATTGA+TGG + chr7_3:7724156-7724175 Msa1092010:CDS 20.0%
!!! TGAATTTTATTGATGGAATT+TGG + chr7_3:7724163-7724182 Msa1092010:CDS 20.0%
! TGGTAAAAAACGTTCAATTA+TGG - chr7_3:7723170-7723189 None:intergenic 25.0%
! AAAAGATAGTCAAAATCCAT+TGG + chr7_3:7723378-7723397 Msa1092010:CDS 25.0%
!! AATTTCAAGGTGTTAAACTT+TGG + chr7_3:7723437-7723456 Msa1092010:CDS 25.0%
! AAAATTGAAACTTCATCACA+TGG + chr7_3:7723472-7723491 Msa1092010:CDS 25.0%
! AAGAAATTGCAATGAGAAAT+AGG + chr7_3:7723602-7723621 Msa1092010:CDS 25.0%
! TATACAAATAATCCAAGTAG+TGG + chr7_3:7723637-7723656 Msa1092010:CDS 25.0%
!!! GATCTTTTGAAGTTTAGAAA+TGG + chr7_3:7723766-7723785 Msa1092010:CDS 25.0%
!! TTTGAAGTTTAGAAATGGTA+AGG + chr7_3:7723771-7723790 Msa1092010:CDS 25.0%
! AAGGACTATTATGCAAAAAT+CGG + chr7_3:7723790-7723809 Msa1092010:CDS 25.0%
! AATAGTAAGGTAACTTTATC+TGG + chr7_3:7724135-7724154 Msa1092010:CDS 25.0%
!! AATTTTCACGACAAATTTTG+TGG + chr7_3:7724212-7724231 Msa1092010:CDS 25.0%
!!! TTGTTGTTTTGAAGCTTTTA+AGG + chr7_3:7724296-7724315 Msa1092010:CDS 25.0%
! GGTTCTTGTTAAGAATTATT+TGG + chr7_3:7724317-7724336 Msa1092010:CDS 25.0%
!!! CATGATTTGTTTGATGAAAT+TGG + chr7_3:7724351-7724370 Msa1092010:CDS 25.0%
! TGGTAAAAAACGTTCAATTA+TGG - chr7_3:7723170-7723189 None:intergenic 25.0%
! AAAAGATAGTCAAAATCCAT+TGG + chr7_3:7723378-7723397 Msa1092010:CDS 25.0%
!! AATTTCAAGGTGTTAAACTT+TGG + chr7_3:7723437-7723456 Msa1092010:CDS 25.0%
! AAAATTGAAACTTCATCACA+TGG + chr7_3:7723472-7723491 Msa1092010:CDS 25.0%
! AAGAAATTGCAATGAGAAAT+AGG + chr7_3:7723602-7723621 Msa1092010:CDS 25.0%
! TATACAAATAATCCAAGTAG+TGG + chr7_3:7723637-7723656 Msa1092010:CDS 25.0%
!!! GATCTTTTGAAGTTTAGAAA+TGG + chr7_3:7723766-7723785 Msa1092010:CDS 25.0%
!! TTTGAAGTTTAGAAATGGTA+AGG + chr7_3:7723771-7723790 Msa1092010:CDS 25.0%
! AAGGACTATTATGCAAAAAT+CGG + chr7_3:7723790-7723809 Msa1092010:CDS 25.0%
! AATAGTAAGGTAACTTTATC+TGG + chr7_3:7724135-7724154 Msa1092010:CDS 25.0%
!! AATTTTCACGACAAATTTTG+TGG + chr7_3:7724212-7724231 Msa1092010:CDS 25.0%
!!! TTGTTGTTTTGAAGCTTTTA+AGG + chr7_3:7724296-7724315 Msa1092010:CDS 25.0%
! GGTTCTTGTTAAGAATTATT+TGG + chr7_3:7724317-7724336 Msa1092010:CDS 25.0%
!!! CATGATTTGTTTGATGAAAT+TGG + chr7_3:7724351-7724370 Msa1092010:CDS 25.0%
TATGGCATACATGAACATTA+TGG - chr7_3:7723152-7723171 None:intergenic 30.0%
AGAATTCATGGAAAGTGATT+TGG - chr7_3:7723258-7723277 None:intergenic 30.0%
!!! ATCAAGCATGTTTTGAAAGA+AGG + chr7_3:7723577-7723596 Msa1092010:CDS 30.0%
!!! TCAAGCATGTTTTGAAAGAA+GGG + chr7_3:7723578-7723597 Msa1092010:CDS 30.0%
CTATTATGCAAAAATCGGTA+AGG + chr7_3:7723795-7723814 Msa1092010:CDS 30.0%
AAACGCGGTTATTTACTTTA+TGG + chr7_3:7723823-7723842 Msa1092010:CDS 30.0%
TTATGATCTTGAATTAACCG+CGG + chr7_3:7723909-7723928 Msa1092010:CDS 30.0%
! TGATGAAATTGGTGATTTGT+TGG + chr7_3:7724362-7724381 Msa1092010:CDS 30.0%
TTTCATTGTGACAGTGAAAA+AGG + chr7_3:7724569-7724588 Msa1092010:CDS 30.0%
TATGGCATACATGAACATTA+TGG - chr7_3:7723152-7723171 None:intergenic 30.0%
AGAATTCATGGAAAGTGATT+TGG - chr7_3:7723258-7723277 None:intergenic 30.0%
!!! ATCAAGCATGTTTTGAAAGA+AGG + chr7_3:7723577-7723596 Msa1092010:CDS 30.0%
!!! TCAAGCATGTTTTGAAAGAA+GGG + chr7_3:7723578-7723597 Msa1092010:CDS 30.0%
CTATTATGCAAAAATCGGTA+AGG + chr7_3:7723795-7723814 Msa1092010:CDS 30.0%
AAACGCGGTTATTTACTTTA+TGG + chr7_3:7723823-7723842 Msa1092010:CDS 30.0%
TTATGATCTTGAATTAACCG+CGG + chr7_3:7723909-7723928 Msa1092010:CDS 30.0%
! TGATGAAATTGGTGATTTGT+TGG + chr7_3:7724362-7724381 Msa1092010:CDS 30.0%
TTTCATTGTGACAGTGAAAA+AGG + chr7_3:7724569-7724588 Msa1092010:CDS 30.0%
AGACTATCACGAAATGAAGA+TGG - chr7_3:7723190-7723209 None:intergenic 35.0%
! GGAAAGTGATTTGGATGTAA+GGG - chr7_3:7723249-7723268 None:intergenic 35.0%
! TGGAAAGTGATTTGGATGTA+AGG - chr7_3:7723250-7723269 None:intergenic 35.0%
ATCACTTTCCATGAATTCTC+AGG + chr7_3:7723259-7723278 Msa1092010:CDS 35.0%
!! TTTGAGTCTTTTGGCTAGTT+GGG - chr7_3:7723347-7723366 None:intergenic 35.0%
TCATCAATGCTAAGAACCAA+TGG - chr7_3:7723397-7723416 None:intergenic 35.0%
GAAGTCACTGATGAATTTCA+AGG + chr7_3:7723424-7723443 Msa1092010:CDS 35.0%
! TTCAAGGTGTTAAACTTTGG+TGG + chr7_3:7723440-7723459 Msa1092010:CDS 35.0%
! TCAAGGTGTTAAACTTTGGT+GGG + chr7_3:7723441-7723460 Msa1092010:CDS 35.0%
TTGCAATGAGAAATAGGCAA+AGG + chr7_3:7723608-7723627 Msa1092010:CDS 35.0%
CAAATAATCCAAGTAGTGGT+TGG + chr7_3:7723641-7723660 Msa1092010:CDS 35.0%
ATGGCTACAAACAATCCAAA+TGG + chr7_3:7723665-7723684 Msa1092010:CDS 35.0%
GAAAACAATGTGACTCCATT+TGG - chr7_3:7723683-7723702 None:intergenic 35.0%
!!! AACTTTTGAGACACTTGCAT+TGG + chr7_3:7723714-7723733 Msa1092010:CDS 35.0%
TATTTACTTTATGGTCCTCC+AGG + chr7_3:7723832-7723851 Msa1092010:CDS 35.0%
ATAGTAGATTTACCTGTTCC+TGG - chr7_3:7723853-7723872 None:intergenic 35.0%
! CACTTGATTTTACTAGCCAA+AGG + chr7_3:7724013-7724032 Msa1092010:CDS 35.0%
TGATGAAGAAGACTCATTCA+TGG + chr7_3:7724059-7724078 Msa1092010:CDS 35.0%
AACTTGATCCTGCTCTTATT+AGG + chr7_3:7724238-7724257 Msa1092010:CDS 35.0%
ACATCTTCATTCACAGACTT+AGG - chr7_3:7724432-7724451 None:intergenic 35.0%
ATTTGATTCAAGCACTTGAG+AGG + chr7_3:7724469-7724488 Msa1092010:CDS 35.0%
ACAAGAAGTAGAAGAAGACA+AGG + chr7_3:7724506-7724525 Msa1092010:CDS 35.0%
AGACTATCACGAAATGAAGA+TGG - chr7_3:7723190-7723209 None:intergenic 35.0%
! GGAAAGTGATTTGGATGTAA+GGG - chr7_3:7723249-7723268 None:intergenic 35.0%
! TGGAAAGTGATTTGGATGTA+AGG - chr7_3:7723250-7723269 None:intergenic 35.0%
ATCACTTTCCATGAATTCTC+AGG + chr7_3:7723259-7723278 Msa1092010:CDS 35.0%
!! TTTGAGTCTTTTGGCTAGTT+GGG - chr7_3:7723347-7723366 None:intergenic 35.0%
TCATCAATGCTAAGAACCAA+TGG - chr7_3:7723397-7723416 None:intergenic 35.0%
GAAGTCACTGATGAATTTCA+AGG + chr7_3:7723424-7723443 Msa1092010:CDS 35.0%
! TTCAAGGTGTTAAACTTTGG+TGG + chr7_3:7723440-7723459 Msa1092010:CDS 35.0%
! TCAAGGTGTTAAACTTTGGT+GGG + chr7_3:7723441-7723460 Msa1092010:CDS 35.0%
TTGCAATGAGAAATAGGCAA+AGG + chr7_3:7723608-7723627 Msa1092010:CDS 35.0%
CAAATAATCCAAGTAGTGGT+TGG + chr7_3:7723641-7723660 Msa1092010:CDS 35.0%
ATGGCTACAAACAATCCAAA+TGG + chr7_3:7723665-7723684 Msa1092010:CDS 35.0%
GAAAACAATGTGACTCCATT+TGG - chr7_3:7723683-7723702 None:intergenic 35.0%
!!! AACTTTTGAGACACTTGCAT+TGG + chr7_3:7723714-7723733 Msa1092010:CDS 35.0%
TATTTACTTTATGGTCCTCC+AGG + chr7_3:7723832-7723851 Msa1092010:CDS 35.0%
ATAGTAGATTTACCTGTTCC+TGG - chr7_3:7723853-7723872 None:intergenic 35.0%
! CACTTGATTTTACTAGCCAA+AGG + chr7_3:7724013-7724032 Msa1092010:CDS 35.0%
TGATGAAGAAGACTCATTCA+TGG + chr7_3:7724059-7724078 Msa1092010:CDS 35.0%
AACTTGATCCTGCTCTTATT+AGG + chr7_3:7724238-7724257 Msa1092010:CDS 35.0%
ACATCTTCATTCACAGACTT+AGG - chr7_3:7724432-7724451 None:intergenic 35.0%
ATTTGATTCAAGCACTTGAG+AGG + chr7_3:7724469-7724488 Msa1092010:CDS 35.0%
ACAAGAAGTAGAAGAAGACA+AGG + chr7_3:7724506-7724525 Msa1092010:CDS 35.0%
GAACATTATGGTGGCTAGTA+TGG - chr7_3:7723140-7723159 None:intergenic 40.0%
GGCATACATGAACATTATGG+TGG - chr7_3:7723149-7723168 None:intergenic 40.0%
GTCTTTCACCTGAGAATTCA+TGG - chr7_3:7723270-7723289 None:intergenic 40.0%
! GGATGAGTTTTCACTTAGGT+AGG - chr7_3:7723326-7723345 None:intergenic 40.0%
! GTTGGGATGAGTTTTCACTT+AGG - chr7_3:7723330-7723349 None:intergenic 40.0%
!! CTTTGAGTCTTTTGGCTAGT+TGG - chr7_3:7723348-7723367 None:intergenic 40.0%
!!! GACTTCAGCTTTGAGTCTTT+TGG - chr7_3:7723356-7723375 None:intergenic 40.0%
! AATCCAAGTAGTGGTTGGTA+TGG + chr7_3:7723646-7723665 Msa1092010:CDS 40.0%
ATGCAAAAATCGGTAAGGCT+TGG + chr7_3:7723800-7723819 Msa1092010:CDS 40.0%
ATCTACTATGATAGCCGCTA+TGG + chr7_3:7723864-7723883 Msa1092010:CDS 40.0%
GTTCATGAAATTCGCCATAG+CGG - chr7_3:7723881-7723900 None:intergenic 40.0%
TCTTGAATTAACCGCGGTTA+AGG + chr7_3:7723915-7723934 Msa1092010:CDS 40.0%
CTCAGTATTATCCTTAACCG+CGG - chr7_3:7723929-7723948 None:intergenic 40.0%
TCTTATTAGGACAGGAAGGA+TGG + chr7_3:7724251-7724270 Msa1092010:CDS 40.0%
AAATTCTCAGCAACATCAGC+AGG - chr7_3:7724405-7724424 None:intergenic 40.0%
GAAGACAAGGAAGATAGTGT+AGG + chr7_3:7724519-7724538 Msa1092010:CDS 40.0%
GTGGAAGATGTGAAGGAAAA+TGG + chr7_3:7724546-7724565 Msa1092010:CDS 40.0%
GAACATTATGGTGGCTAGTA+TGG - chr7_3:7723140-7723159 None:intergenic 40.0%
GGCATACATGAACATTATGG+TGG - chr7_3:7723149-7723168 None:intergenic 40.0%
GTCTTTCACCTGAGAATTCA+TGG - chr7_3:7723270-7723289 None:intergenic 40.0%
! GGATGAGTTTTCACTTAGGT+AGG - chr7_3:7723326-7723345 None:intergenic 40.0%
! GTTGGGATGAGTTTTCACTT+AGG - chr7_3:7723330-7723349 None:intergenic 40.0%
!! CTTTGAGTCTTTTGGCTAGT+TGG - chr7_3:7723348-7723367 None:intergenic 40.0%
!!! GACTTCAGCTTTGAGTCTTT+TGG - chr7_3:7723356-7723375 None:intergenic 40.0%
! AATCCAAGTAGTGGTTGGTA+TGG + chr7_3:7723646-7723665 Msa1092010:CDS 40.0%
ATGCAAAAATCGGTAAGGCT+TGG + chr7_3:7723800-7723819 Msa1092010:CDS 40.0%
ATCTACTATGATAGCCGCTA+TGG + chr7_3:7723864-7723883 Msa1092010:CDS 40.0%
GTTCATGAAATTCGCCATAG+CGG - chr7_3:7723881-7723900 None:intergenic 40.0%
TCTTGAATTAACCGCGGTTA+AGG + chr7_3:7723915-7723934 Msa1092010:CDS 40.0%
CTCAGTATTATCCTTAACCG+CGG - chr7_3:7723929-7723948 None:intergenic 40.0%
TCTTATTAGGACAGGAAGGA+TGG + chr7_3:7724251-7724270 Msa1092010:CDS 40.0%
AAATTCTCAGCAACATCAGC+AGG - chr7_3:7724405-7724424 None:intergenic 40.0%
GAAGACAAGGAAGATAGTGT+AGG + chr7_3:7724519-7724538 Msa1092010:CDS 40.0%
GTGGAAGATGTGAAGGAAAA+TGG + chr7_3:7724546-7724565 Msa1092010:CDS 40.0%
AGTGAACTATGGGCACAACT+AGG + chr7_3:7723112-7723131 Msa1092010:CDS 45.0%
TAGCCATACCAACCACTACT+TGG - chr7_3:7723652-7723671 None:intergenic 45.0%
GCAAGTGTCTCAAAAGTTGC+AGG - chr7_3:7723712-7723731 None:intergenic 45.0%
GTAGATTTACCTGTTCCTGG+AGG - chr7_3:7723850-7723869 None:intergenic 45.0%
GATCCTGCTCTTATTAGGAC+AGG + chr7_3:7724243-7724262 Msa1092010:CDS 45.0%
CTTCCTGTCCTAATAAGAGC+AGG - chr7_3:7724249-7724268 None:intergenic 45.0%
CTGCTCTTATTAGGACAGGA+AGG + chr7_3:7724247-7724266 Msa1092010:CDS 45.0%
TCAAGCACTTGAGAGGAAGA+AGG + chr7_3:7724476-7724495 Msa1092010:CDS 45.0%
GGAAGATAGTGTAGGAACTG+TGG + chr7_3:7724527-7724546 Msa1092010:CDS 45.0%
AGGAACTGTGGAAGATGTGA+AGG + chr7_3:7724539-7724558 Msa1092010:CDS 45.0%
AGTGAACTATGGGCACAACT+AGG + chr7_3:7723112-7723131 Msa1092010:CDS 45.0%
TAGCCATACCAACCACTACT+TGG - chr7_3:7723652-7723671 None:intergenic 45.0%
GCAAGTGTCTCAAAAGTTGC+AGG - chr7_3:7723712-7723731 None:intergenic 45.0%
GTAGATTTACCTGTTCCTGG+AGG - chr7_3:7723850-7723869 None:intergenic 45.0%
GATCCTGCTCTTATTAGGAC+AGG + chr7_3:7724243-7724262 Msa1092010:CDS 45.0%
CTTCCTGTCCTAATAAGAGC+AGG - chr7_3:7724249-7724268 None:intergenic 45.0%
CTGCTCTTATTAGGACAGGA+AGG + chr7_3:7724247-7724266 Msa1092010:CDS 45.0%
TCAAGCACTTGAGAGGAAGA+AGG + chr7_3:7724476-7724495 Msa1092010:CDS 45.0%
GGAAGATAGTGTAGGAACTG+TGG + chr7_3:7724527-7724546 Msa1092010:CDS 45.0%
AGGAACTGTGGAAGATGTGA+AGG + chr7_3:7724539-7724558 Msa1092010:CDS 45.0%
ATCGGTAAGGCTTGGAAACG+CGG + chr7_3:7723808-7723827 Msa1092010:CDS 50.0%
CTTTATGGTCCTCCAGGAAC+AGG + chr7_3:7723838-7723857 Msa1092010:CDS 50.0%
GATGGAATTTGGTCCGCATG+TGG + chr7_3:7724174-7724193 Msa1092010:CDS 50.0%
GAATTTGGTCCGCATGTGGA+GGG + chr7_3:7724178-7724197 Msa1092010:CDS 50.0%
AATTTGGTCCGCATGTGGAG+GGG + chr7_3:7724179-7724198 Msa1092010:CDS 50.0%
AGCACTTGAGAGGAAGAAGG+TGG + chr7_3:7724479-7724498 Msa1092010:CDS 50.0%
ATCGGTAAGGCTTGGAAACG+CGG + chr7_3:7723808-7723827 Msa1092010:CDS 50.0%
CTTTATGGTCCTCCAGGAAC+AGG + chr7_3:7723838-7723857 Msa1092010:CDS 50.0%
GATGGAATTTGGTCCGCATG+TGG + chr7_3:7724174-7724193 Msa1092010:CDS 50.0%
GAATTTGGTCCGCATGTGGA+GGG + chr7_3:7724178-7724197 Msa1092010:CDS 50.0%
AATTTGGTCCGCATGTGGAG+GGG + chr7_3:7724179-7724198 Msa1092010:CDS 50.0%
AGCACTTGAGAGGAAGAAGG+TGG + chr7_3:7724479-7724498 Msa1092010:CDS 50.0%
GGAATTTGGTCCGCATGTGG+AGG + chr7_3:7724177-7724196 Msa1092010:CDS 55.0%
AATCCTCTCCCCTCCACATG+CGG - chr7_3:7724190-7724209 None:intergenic 55.0%
GGAATTTGGTCCGCATGTGG+AGG + chr7_3:7724177-7724196 Msa1092010:CDS 55.0%
AATCCTCTCCCCTCCACATG+CGG - chr7_3:7724190-7724209 None:intergenic 55.0%
GGTCCGCATGTGGAGGGGAG+AGG + chr7_3:7724184-7724203 Msa1092010:CDS 70.0%
GGTCCGCATGTGGAGGGGAG+AGG + chr7_3:7724184-7724203 Msa1092010:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 7723109 7724605 7723109 ID=Msa1092010;Name=Msa1092010
chr7_3 mRNA 7723109 7724605 7723109 ID=Msa1092010-mRNA-1;Parent=Msa1092010;Name=Msa1092010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|498
chr7_3 exon 7723109 7724605 7723109 ID=Msa1092010-mRNA-1:exon:2401;Parent=Msa1092010-mRNA-1
chr7_3 CDS 7723109 7724605 7723109 ID=Msa1092010-mRNA-1:cds;Parent=Msa1092010-mRNA-1
Gene Sequence

>Msa1092010

ATGAGTGAACTATGGGCACAACTAGGCTCCATACTAGCCACCATAATGTTCATGTATGCCATAATTGAACGTTTTTTACCATCTTCATTTCGTGATAGTCTTCAAATCTACTCACAAAAAGTAATAACTCTTTTTTACCCTTACATCCAAATCACTTTCCATGAATTCTCAGGTGAAAGACTCAAAAGAAGTGAAGCATACACTTTCATACAAACCTACCTAAGTGAAAACTCATCCCAACTAGCCAAAAGACTCAAAGCTGAAGTCATAAAAGATAGTCAAAATCCATTGGTTCTTAGCATTGATGATGATGAAGAAGTCACTGATGAATTTCAAGGTGTTAAACTTTGGTGGGCTGCAATCAAAATTGAAACTTCATCACATGGCTTTTCTTCTTTCTCTAATTATAAGAGATACTATAAACTCACTTTTCATAAAAAGCATAGAGATTTGATTACAATTTCTTACATCAAGCATGTTTTGAAAGAAGGGAAAGAAATTGCAATGAGAAATAGGCAAAGGAAGCTTTATACAAATAATCCAAGTAGTGGTTGGTATGGCTACAAACAATCCAAATGGAGTCACATTGTTTTCGAACATCCTGCAACTTTTGAGACACTTGCATTGGAGAAGAAGAAAAAAGATGAAGTTATTAAAGATCTTTTGAAGTTTAGAAATGGTAAGGACTATTATGCAAAAATCGGTAAGGCTTGGAAACGCGGTTATTTACTTTATGGTCCTCCAGGAACAGGTAAATCTACTATGATAGCCGCTATGGCGAATTTCATGAACTATGATGTTTATGATCTTGAATTAACCGCGGTTAAGGATAATACTGAGTTAAGAAAGTTGTTAATTGAGACTTCTAGTAAAGCTATTATAGTTGTTGAAGATATTGATTGTTCACTTGATTTTACTAGCCAAAGGAAGATTAATAAAAATGAAAAAAATGATGAAGAAGACTCATTCATGGAACAAAAAGATTATTATCATAGGAAAAAAGAGGAAGAAGATAATAATAGTAAAAATAGTAAGGTAACTTTATCTGGTTTATTGAATTTTATTGATGGAATTTGGTCCGCATGTGGAGGGGAGAGGATTATAATTTTCACGACAAATTTTGTGGAGAAACTTGATCCTGCTCTTATTAGGACAGGAAGGATGGATAAACATGTTGAGTTATCTTATTGTTGTTTTGAAGCTTTTAAGGTTCTTGTTAAGAATTATTTGGATATTGAGTCACATGATTTGTTTGATGAAATTGGTGATTTGTTGGAAGTTATTAATATGACACCTGCTGATGTTGCTGAGAATTTGATGCCTAAGTCTGTGAATGAAGATGTTGAAACTAGTTTGAAGAATTTGATTCAAGCACTTGAGAGGAAGAAGGTGGAAGAACAAGAAGTAGAAGAAGACAAGGAAGATAGTGTAGGAACTGTGGAAGATGTGAAGGAAAATGGTTTCATTGTGACAGTGAAAAAGGATATAGTTCTGTGA

Protein sequence

>Msa1092010

MSELWAQLGSILATIMFMYAIIERFLPSSFRDSLQIYSQKVITLFYPYIQITFHEFSGERLKRSEAYTFIQTYLSENSSQLAKRLKAEVIKDSQNPLVLSIDDDEEVTDEFQGVKLWWAAIKIETSSHGFSSFSNYKRYYKLTFHKKHRDLITISYIKHVLKEGKEIAMRNRQRKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLALEKKKKDEVIKDLLKFRNGKDYYAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDFTSQRKINKNEKNDEEDSFMEQKDYYHRKKEEEDNNSKNSKVTLSGLLNFIDGIWSACGGERIIIFTTNFVEKLDPALIRTGRMDKHVELSYCCFEAFKVLVKNYLDIESHDLFDEIGDLLEVINMTPADVAENLMPKSVNEDVETSLKNLIQALERKKVEEQEVEEDKEDSVGTVEDVKENGFIVTVKKDIVL*