AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1155210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1155210 MtrunA17_Chr7g0246801 97.390 613 15 1 1 613 1 612 0.0 1238
Msa1155210 MtrunA17_Chr6g0470821 36.220 254 153 6 1 249 1 250 5.27e-34 136
Msa1155210 MtrunA17_Chr7g0228021 45.161 124 66 2 117 240 1026 1147 7.73e-22 100
Msa1155210 MtrunA17_Chr1g0193411 31.095 283 160 15 1 257 1 274 7.17e-17 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1155210 AT1G01880.3 54.160 613 265 7 1 612 1 598 0.0 645
Msa1155210 AT1G01880.1 54.160 613 265 7 1 612 1 598 0.0 645
Msa1155210 AT1G01880.2 53.997 613 265 8 1 612 1 597 0.0 638
Msa1155210 AT1G01880.4 51.002 549 253 7 65 612 7 540 0.0 530
Msa1155210 AT3G48900.2 35.294 255 150 7 1 247 1 248 2.51e-31 129
Msa1155210 AT3G28030.2 27.410 332 198 8 83 414 889 1177 9.63e-24 107
Msa1155210 AT3G28030.4 27.410 332 198 8 83 414 697 985 1.06e-23 107
Msa1155210 AT3G28030.1 27.410 332 198 8 83 414 889 1177 1.28e-23 107
Msa1155210 AT3G28030.3 25.758 396 232 10 83 478 915 1248 1.53e-23 106
Msa1155210 AT3G48900.3 39.726 146 87 1 102 247 40 184 1.95e-21 99.0
Msa1155210 AT3G48900.1 39.726 146 87 1 102 247 40 184 2.02e-21 98.6
Msa1155210 AT5G26680.2 27.397 292 171 10 16 272 19 304 1.06e-17 85.9
Msa1155210 AT5G26680.5 27.397 292 171 10 16 272 19 304 3.20e-17 84.7
Msa1155210 AT5G26680.4 27.397 292 171 10 16 272 19 304 3.20e-17 84.7
Msa1155210 AT5G26680.3 27.397 292 171 10 16 272 19 304 3.20e-17 84.7
Msa1155210 AT5G26680.1 27.397 292 171 10 16 272 19 304 3.53e-17 85.1

Find 137 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGACCTTCACTATTTAAT+TGG 0.053466 7_4:+43078197 None:intergenic
ATTTCATCCTTTGGAAAATT+TGG 0.099249 7_4:+43076489 None:intergenic
GACAGTGATGCATTCCTCTT+TGG 0.175216 7_4:-43078154 Msa1155210:CDS
CCAACCGATAGTTTGCTATT+TGG 0.175622 7_4:-43076147 Msa1155210:CDS
AGGCGACGCCTAACAGATTT+TGG 0.191704 7_4:+43075357 None:intergenic
GTCATGAACACAAAATTAAA+AGG 0.198863 7_4:+43075214 None:intergenic
TGGGTGTTGGTGGTAATTTC+TGG 0.201430 7_4:-43079899 Msa1155210:CDS
GATGACTCTTCTCCATGTTT+TGG 0.212072 7_4:+43075453 None:intergenic
TTTGTAGTTTGGAGCGTTTC+CGG 0.219279 7_4:-43078703 Msa1155210:intron
TTTCTGCTTAATCACGATAA+TGG 0.227941 7_4:+43079939 None:intergenic
CCTAATAGCTATCTCTCTTT+TGG 0.274761 7_4:-43077383 Msa1155210:CDS
ATCCATCTTCTTCACAAATC+TGG 0.278684 7_4:+43075935 None:intergenic
CAACCGATAGTTTGCTATTT+GGG 0.292855 7_4:-43076146 Msa1155210:CDS
CATTAAAGCTGAGGAAAATA+TGG 0.298254 7_4:-43076932 Msa1155210:CDS
TTGCTATTGATTTATCGTTT+TGG 0.299838 7_4:-43079818 Msa1155210:CDS
ACAGTGATGCATTCCTCTTT+GGG 0.302361 7_4:-43078153 Msa1155210:CDS
GGACTTGACGATTTCCTCTT+TGG 0.304845 7_4:+43075387 None:intergenic
CTCATGGGAAAGACCGAATA+TGG 0.314813 7_4:-43076280 Msa1155210:CDS
ACGGTCACTTACTTTGGAAT+TGG 0.315064 7_4:+43078102 None:intergenic
CTGCTCATTCTGTGGGCATC+CGG 0.316217 7_4:-43076872 Msa1155210:CDS
TTCTGCTTAATCACGATAAT+GGG 0.323889 7_4:+43079940 None:intergenic
AAAACCTTCATTGCGTGAAT+AGG 0.329105 7_4:+43079863 None:intergenic
TTTCCGGTGTTCGTTGTTGA+TGG 0.330529 7_4:-43078687 Msa1155210:CDS
TGCATGCCAGATTTATTTGC+CGG 0.335933 7_4:+43076021 None:intergenic
ATGAAAATATGGACCTTGTT+GGG 0.338687 7_4:-43075894 Msa1155210:CDS
AAACCTTCATTGCGTGAATA+GGG 0.344866 7_4:+43079864 None:intergenic
TCTGTTGACAGATGAAAATA+TGG 0.352773 7_4:-43075905 Msa1155210:CDS
CAAGCTAGTCGACTCAATTC+CGG 0.360228 7_4:+43078611 None:intergenic
AGAACTCTGTAATATTTAAC+TGG 0.360267 7_4:+43075502 None:intergenic
CCAAAAGAGAGATAGCTATT+AGG 0.366111 7_4:+43077383 None:intergenic
ATATCAATGATTTCATCCTT+TGG 0.375355 7_4:+43076480 None:intergenic
CGGTCACTTACTTTGGAATT+GGG 0.384232 7_4:+43078103 None:intergenic
GGGTGTTGGTGGTAATTTCT+GGG 0.384908 7_4:-43079898 Msa1155210:CDS
CTTGACATCAAATTTATAAG+AGG 0.386394 7_4:-43075110 Msa1155210:three_prime_UTR
AATTGAGTCGACTAGCTTGC+CGG 0.386864 7_4:-43078607 Msa1155210:CDS
AGGTTTCGTATGTTACTGTT+AGG 0.388087 7_4:+43080014 None:intergenic
ATGACCTTCACTATTTAATT+GGG 0.390559 7_4:+43078198 None:intergenic
ATGTGTAGTTAACAATAGTT+TGG 0.396151 7_4:-43075168 Msa1155210:three_prime_UTR
CTGAGGTGAGGTTTCTTGAC+AGG 0.400391 7_4:+43079765 None:intergenic
AAAACTCCGGCAAATAAATC+TGG 0.403594 7_4:-43076027 Msa1155210:CDS
AAGACCGAATATGGACCTTC+TGG 0.404898 7_4:-43076271 Msa1155210:CDS
GTGAAGATGATATATTGAAT+AGG 0.410092 7_4:-43077285 Msa1155210:intron
AAGAAGATGGTTGACATCAT+AGG 0.410471 7_4:+43076189 None:intergenic
TCAGATATTGAAGCTGGGCT+TGG 0.410473 7_4:-43077421 Msa1155210:CDS
TCCATCTTCTTCACAAATCT+GGG 0.412006 7_4:+43075936 None:intergenic
TTTAAATTTGCAGGAATTGA+AGG 0.414875 7_4:-43075604 Msa1155210:intron
AACCATCTTCTTGAGAGAAA+TGG 0.422847 7_4:-43076178 Msa1155210:CDS
GAAAAGGTTCCGGCAGGAAC+AGG 0.426754 7_4:-43075851 Msa1155210:intron
TAGGAACTTGCTAAGCTACT+TGG 0.427518 7_4:-43078265 Msa1155210:CDS
TCCTCAGCTTTAATGTCAAT+AGG 0.430541 7_4:+43076940 None:intergenic
CAGAAGAAGTGAAAAGGTTC+CGG 0.431380 7_4:-43075861 Msa1155210:CDS
CTAATATTCCAAAATCTGTT+AGG 0.432669 7_4:-43075365 Msa1155210:CDS
CCCCAGATTTGTGAAGAAGA+TGG 0.435198 7_4:-43075937 Msa1155210:CDS
TACGATTTGAGTGGTGTTCA+AGG 0.445818 7_4:-43077349 Msa1155210:CDS
TCAACCAGAAGGTCCATATT+CGG 0.445944 7_4:+43076267 None:intergenic
GATGAAAATATGGACCTTGT+TGG 0.449635 7_4:-43075895 Msa1155210:CDS
TGATTGCAATTCTTGTTGTA+TGG 0.451072 7_4:-43076758 Msa1155210:intron
CAATCACATTTAAAACCCTC+TGG 0.451761 7_4:+43076775 None:intergenic
GCTGAAGAAGGTGTTTCAGC+TGG 0.452391 7_4:-43078582 Msa1155210:CDS
TTCCGGTGTTCGTTGTTGAT+GGG 0.454954 7_4:-43078686 Msa1155210:CDS
TTGTGGAACAGACACTGAAC+AGG 0.459174 7_4:+43079994 None:intergenic
AATATGTCAGATATTGAAGC+TGG 0.465572 7_4:-43077427 Msa1155210:CDS
AGCCATTTCTCTCAAGAAGA+TGG 0.471480 7_4:+43076176 None:intergenic
ACTTTGTTTGCAGTGAATGA+TGG 0.475062 7_4:-43076312 Msa1155210:intron
GTCAAGTGGAAACGTGCAAT+GGG 0.475276 7_4:-43076063 Msa1155210:CDS
TGCTCATTCTGTGGGCATCC+GGG 0.483415 7_4:-43076871 Msa1155210:CDS
GACATATTGTAGCATTCAAA+CGG 0.484489 7_4:+43077442 None:intergenic
TCTCCTTTAGCCTTCAGTAC+AGG 0.490882 7_4:+43078238 None:intergenic
CACACTACTAGTCAAACAAA+AGG 0.494721 7_4:+43075337 None:intergenic
AAGCCCTATTCACGCAATGA+AGG 0.496872 7_4:-43079867 Msa1155210:CDS
GCCTGTGATTTCAACGGAGA+TGG 0.497761 7_4:+43078660 None:intergenic
CAATGCAGATTACATGAGAT+AGG 0.498331 7_4:-43076985 Msa1155210:intron
AAGAGGAATGCATCACTGTC+AGG 0.499239 7_4:+43078157 None:intergenic
ATATTAACTGAGTGTTGAAA+AGG 0.499888 7_4:-43075248 Msa1155210:three_prime_UTR
CTCCGTTGAAATCACAGGCC+AGG 0.502105 7_4:-43078656 Msa1155210:CDS
ATGACAGAATAGGAAACATA+AGG 0.503679 7_4:-43076568 Msa1155210:intron
GACGATTAATCTCTTCTCAA+AGG 0.504394 7_4:-43079727 Msa1155210:intron
GAGGAAAATATGGATATTGA+CGG 0.504501 7_4:-43076922 Msa1155210:CDS
AGGAACTTGCTAAGCTACTT+GGG 0.506203 7_4:-43078264 Msa1155210:CDS
CACACTGAACTAACTGCCCT+TGG 0.507097 7_4:+43075192 None:intergenic
ACTGGGATCCGTCATACATT+CGG 0.507228 7_4:-43076224 Msa1155210:CDS
AATTCAATCATGGGTGTTGG+TGG 0.511542 7_4:-43079909 Msa1155210:exon
TGAGGTGAGGTTTCTTGACA+GGG 0.512535 7_4:+43079766 None:intergenic
AGCTTGCCGGTTGCTGAAGA+AGG 0.515821 7_4:-43078594 Msa1155210:CDS
ATTAATTCAATCATGGGTGT+TGG 0.517628 7_4:-43079912 Msa1155210:exon
AAATATTGCCTCTAAAACTC+CGG 0.521848 7_4:-43076040 Msa1155210:CDS
TGTGTCGCGGATGGCAATGA+AGG 0.522660 7_4:-43076811 Msa1155210:CDS
ATGACGGATCCCAGTTCTGA+TGG 0.524536 7_4:+43076232 None:intergenic
TCAACATCACCAAACTCAAA+AGG 0.525832 7_4:-43075528 Msa1155210:CDS
ATGATGGACCTCAGATCTCA+TGG 0.526994 7_4:-43076296 Msa1155210:CDS
GAAACACCTTCTTCAGCAAC+CGG 0.528035 7_4:+43078588 None:intergenic
CAAACTCACTGCTCATTCTG+TGG 0.528123 7_4:-43076880 Msa1155210:CDS
AAAACGATTAATTCAATCAT+GGG 0.528695 7_4:-43079918 Msa1155210:exon
TCGACTCAATTCCGGAAGAC+CGG 0.531944 7_4:+43078619 None:intergenic
TTGAGTGGTGTTCAAGGGAT+CGG 0.533209 7_4:-43077343 Msa1155210:CDS
TCATGAACACAAAATTAAAA+GGG 0.536095 7_4:+43075215 None:intergenic
TCCTATTGACATTAAAGCTG+AGG 0.538234 7_4:-43076941 Msa1155210:CDS
CTGAAGAAGGTGTTTCAGCT+GGG 0.541185 7_4:-43078581 Msa1155210:CDS
CTTACGCAGAAGAAGTGAAA+AGG 0.545988 7_4:-43075867 Msa1155210:CDS
TGTCAAGTGGAAACGTGCAA+TGG 0.549796 7_4:-43076064 Msa1155210:CDS
AAACGTGTGAAGACGAGATA+CGG 0.554447 7_4:-43076102 Msa1155210:CDS
TAATGCATTTAGCCCCAAAG+AGG 0.555621 7_4:+43078140 None:intergenic
TTTAAACTTCCATCAGAACT+GGG 0.555624 7_4:-43076241 Msa1155210:CDS
CAGTGATGCATTCCTCTTTG+GGG 0.562537 7_4:-43078152 Msa1155210:CDS
TCCATCTCCGTTGAAATCAC+AGG 0.563135 7_4:-43078661 Msa1155210:CDS
ATTCCTGTACTGAAGGCTAA+AGG 0.568014 7_4:-43078241 Msa1155210:CDS
TAATAAATACCTGTTCCTGC+CGG 0.568278 7_4:+43075842 None:intergenic
AGGAAAATATGGATATTGAC+GGG 0.569377 7_4:-43076921 Msa1155210:CDS
AAACTCACTGCTCATTCTGT+GGG 0.570395 7_4:-43076879 Msa1155210:CDS
ACGATTTGAGTGGTGTTCAA+GGG 0.573182 7_4:-43077348 Msa1155210:CDS
AGAAGTGAAAAGGTTCCGGC+AGG 0.576018 7_4:-43075857 Msa1155210:CDS
CTGCCCAAATAGCAAACTAT+CGG 0.576488 7_4:+43076143 None:intergenic
AGATTACATGAGATAGGCAA+AGG 0.579994 7_4:-43076979 Msa1155210:CDS
GATTACATGAGATAGGCAAA+GGG 0.589882 7_4:-43076978 Msa1155210:CDS
ACTTGGGATTCCTGTACTGA+AGG 0.589944 7_4:-43078248 Msa1155210:CDS
ATAATCCGCCGAATGTATGA+CGG 0.593450 7_4:+43076216 None:intergenic
CTGCGTAAGCAGCCCCAACA+AGG 0.593557 7_4:+43075881 None:intergenic
TGAAAATATGGACCTTGTTG+GGG 0.600292 7_4:-43075893 Msa1155210:CDS
GTCCCATCAACAACGAACAC+CGG 0.600640 7_4:+43078684 None:intergenic
CCAAATAGCAAACTATCGGT+TGG 0.605787 7_4:+43076147 None:intergenic
GGTCTTTCCCATGAGATCTG+AGG 0.617897 7_4:+43076288 None:intergenic
ATATGTCAGATATTGAAGCT+GGG 0.620721 7_4:-43077426 Msa1155210:CDS
GGAAATGATTACGATTTGAG+TGG 0.621724 7_4:-43077358 Msa1155210:CDS
TGTGCCCAATTAAATAGTGA+AGG 0.623153 7_4:-43078202 Msa1155210:CDS
AGTAAACAAAATCCAAAACA+TGG 0.628201 7_4:-43075465 Msa1155210:CDS
GAGGTGAGGTTTCTTGACAG+GGG 0.631952 7_4:+43079767 None:intergenic
TGATGGACCTCAGATCTCAT+GGG 0.634706 7_4:-43076295 Msa1155210:CDS
AAGCTGGGCTTGGATTGAAG+AGG 0.636947 7_4:-43077411 Msa1155210:CDS
CCATCTTCTTCACAAATCTG+GGG 0.640984 7_4:+43075937 None:intergenic
AATGACAGCCAAGACAGTGG+AGG 0.663678 7_4:-43075417 Msa1155210:CDS
AAGAAGGTGTTTCAGCTGGG+AGG 0.668107 7_4:-43078578 Msa1155210:CDS
AAGATGTGTTCAAGAGTGTG+TGG 0.672457 7_4:-43078541 Msa1155210:intron
GTGGAGGCTCAAAACCAAAG+AGG 0.681076 7_4:-43075401 Msa1155210:CDS
ATCCTGGCCTGTGATTTCAA+CGG 0.687854 7_4:+43078654 None:intergenic
AATCTGTGACAAGATTGCAA+AGG 0.695313 7_4:-43076514 Msa1155210:CDS
GCATGATGTTGATGAAACAG+TGG 0.705087 7_4:-43075983 Msa1155210:CDS
ATGTATCTATGCAATGACAA+TGG 0.712623 7_4:-43076459 Msa1155210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTAATATAATCAAAA+GGG + chr7_4:43075537-43075556 None:intergenic 10.0%
!!! TTTTTTCTAATATAATCAAA+AGG + chr7_4:43075538-43075557 None:intergenic 10.0%
!!! TTTTTTCTTTATAATCAAAA+GGG + chr7_4:43075728-43075747 None:intergenic 10.0%
!!! TTTTTTTCTTTATAATCAAA+AGG + chr7_4:43075729-43075748 None:intergenic 10.0%
!!! ATTTTTATTTTTTTGTAGTT+TGG - chr7_4:43076451-43076470 Msa1155210:CDS 10.0%
!!! ATGTTTTTTTACTATATTTT+TGG - chr7_4:43078509-43078528 Msa1155210:intron 10.0%
!!! ATTTTTTTAGTATTTTTCAA+AGG - chr7_4:43078557-43078576 Msa1155210:CDS 10.0%
!! AAAAAATTTAAGTGATTGTT+TGG - chr7_4:43075552-43075571 Msa1155210:CDS 15.0%
!!! ATAAAAAATTAGAGTTTGTT+TGG - chr7_4:43075892-43075911 Msa1155210:CDS 15.0%
!!! TCAATTTTTCTCTTTTAAAA+GGG + chr7_4:43076062-43076081 None:intergenic 15.0%
!! AATCAGAGTTTATATTATAA+TGG + chr7_4:43077128-43077147 None:intergenic 15.0%
!! TTATAATATAAACTCTGATT+TGG - chr7_4:43077128-43077147 Msa1155210:intron 15.0%
!! CTATTAATCTAAATTTAACA+TGG + chr7_4:43077541-43077560 None:intergenic 15.0%
!! AAAATAATTAACCATTTAAG+GGG + chr7_4:43079470-43079489 None:intergenic 15.0%
!! CAAAATAATTAACCATTTAA+GGG + chr7_4:43079471-43079490 None:intergenic 15.0%
!! TCAAAATAATTAACCATTTA+AGG + chr7_4:43079472-43079491 None:intergenic 15.0%
!! TATAAATGATTTAAATTTGC+AGG - chr7_4:43079552-43079571 Msa1155210:intron 15.0%
!!! ATCAAAATTTTGTCTTTTTG+TGG + chr7_4:43075191-43075210 None:intergenic 20.0%
!! AAAAACGATTAATTCAATCA+TGG - chr7_4:43075246-43075265 Msa1155210:three_prime_UTR 20.0%
!! AAAACGATTAATTCAATCAT+GGG - chr7_4:43075247-43075266 Msa1155210:three_prime_UTR 20.0%
!! AAAAAAATTGAGAGATTGTT+TGG - chr7_4:43075742-43075761 Msa1155210:intron 20.0%
!!! AAAATGTGTTTTTACCTTTT+TGG - chr7_4:43075606-43075625 Msa1155210:intron 20.0%
!!! CTCAATTTTTCTCTTTTAAA+AGG + chr7_4:43076063-43076082 None:intergenic 20.0%
!! GATTATTAAACCAAACATTA+TGG + chr7_4:43076180-43076199 None:intergenic 20.0%
!! AACATATTGGTAGAAAAATT+AGG + chr7_4:43076731-43076750 None:intergenic 20.0%
!! ATGGAAAGTAAATAAGATTT+GGG + chr7_4:43076794-43076813 None:intergenic 20.0%
!! TATGGAAAGTAAATAAGATT+TGG + chr7_4:43076795-43076814 None:intergenic 20.0%
!! TGGTTTAATTGATAAGAATA+CGG - chr7_4:43077571-43077590 Msa1155210:intron 20.0%
!!! TGATATATATGCATTTTACT+CGG + chr7_4:43077923-43077942 None:intergenic 20.0%
!! TGATATTTATATGACAGAAT+AGG - chr7_4:43078587-43078606 Msa1155210:CDS 20.0%
!! AAATCATTTATATCTCAACA+CGG + chr7_4:43079544-43079563 None:intergenic 20.0%
!!! TTTTGGATTTTGTTTACTTT+TGG + chr7_4:43079698-43079717 None:intergenic 20.0%
!! TCATGAACACAAAATTAAAA+GGG + chr7_4:43079953-43079972 None:intergenic 20.0%
!!! TTGCTATTGATTTATCGTTT+TGG - chr7_4:43075347-43075366 Msa1155210:CDS 25.0%
!!! TTTAAGTGATTGTTTGGTTT+TGG - chr7_4:43075558-43075577 Msa1155210:CDS 25.0%
!!! TTAAGTGATTGTTTGGTTTT+GGG - chr7_4:43075559-43075578 Msa1155210:CDS 25.0%
!! AAAATTAGAGTTTGTTTGGT+TGG - chr7_4:43075896-43075915 Msa1155210:CDS 25.0%
!! AAATTAGAGTTTGTTTGGTT+GGG - chr7_4:43075897-43075916 Msa1155210:CDS 25.0%
!!! ATTGAGAGATTGTTTTGTTT+TGG - chr7_4:43076077-43076096 Msa1155210:CDS 25.0%
!!! TTGAGAGATTGTTTTGTTTT+GGG - chr7_4:43076078-43076097 Msa1155210:CDS 25.0%
!!! AAAACGTGTTATTACCATTT+TGG - chr7_4:43076213-43076232 Msa1155210:CDS 25.0%
! ATACTCAAACATAACCAAAA+TGG + chr7_4:43076230-43076249 None:intergenic 25.0%
!!! ATTTTGGTTATGTTTGAGTA+TGG - chr7_4:43076229-43076248 Msa1155210:CDS 25.0%
! CAATTTGAATTACTTGTCAT+TGG - chr7_4:43076282-43076301 Msa1155210:CDS 25.0%
! AAGATATAGAAGCAACATAT+TGG + chr7_4:43076744-43076763 None:intergenic 25.0%
!! TCTTATTTACTTTCCATATG+TGG - chr7_4:43076797-43076816 Msa1155210:CDS 25.0%
! CCTTATAGCTATATGTTAAT+CGG - chr7_4:43076874-43076893 Msa1155210:CDS 25.0%
! ATGACCTTCACTATTTAATT+GGG + chr7_4:43076970-43076989 None:intergenic 25.0%
! TAAAGAAAATACAATGACGA+CGG + chr7_4:43077085-43077104 None:intergenic 25.0%
! GTTTATATTATAATGGCTGA+AGG + chr7_4:43077121-43077140 None:intergenic 25.0%
!! GTCACATGACTTTTATTAAA+TGG - chr7_4:43077203-43077222 Msa1155210:intron 25.0%
! ATTAAATGGTAGCATACTAT+AGG - chr7_4:43077217-43077236 Msa1155210:intron 25.0%
! GGTTTAATTGATAAGAATAC+GGG - chr7_4:43077572-43077591 Msa1155210:intron 25.0%
! GTGAAGATGATATATTGAAT+AGG - chr7_4:43077880-43077899 Msa1155210:intron 25.0%
! TATGATATAGGTGTAGAATA+GGG + chr7_4:43078064-43078083 None:intergenic 25.0%
! TAACATGAAAGCTATGATAT+AGG + chr7_4:43078076-43078095 None:intergenic 25.0%
!! GATGAACAGAATAAAACTTT+TGG - chr7_4:43078128-43078147 Msa1155210:CDS 25.0%
!!! AATAAAACTTTTGGTCTTTG+TGG - chr7_4:43078137-43078156 Msa1155210:CDS 25.0%
! ATTGAAGATCATATTCAATC+AGG + chr7_4:43078164-43078183 None:intergenic 25.0%
!!! AGTGAGTTTGTTTTGTATTT+GGG + chr7_4:43078275-43078294 None:intergenic 25.0%
! ACTAGAAAAGTCTACTTTAT+TGG + chr7_4:43078535-43078554 None:intergenic 25.0%
!! ATTTCATCCTTTGGAAAATT+TGG + chr7_4:43078679-43078698 None:intergenic 25.0%
! ATATCAATGATTTCATCCTT+TGG + chr7_4:43078688-43078707 None:intergenic 25.0%
! AGTTTAAAAAATCAACCAGA+AGG + chr7_4:43078912-43078931 None:intergenic 25.0%
! ATTATTTCATATCTAGCGTT+TGG - chr7_4:43079342-43079361 Msa1155210:intron 25.0%
! CAATTAACCACTTAATTAAG+CGG - chr7_4:43079437-43079456 Msa1155210:intron 25.0%
!!! TTTGACTTTTAGAATCATCT+TGG - chr7_4:43079487-43079506 Msa1155210:intron 25.0%
! TTTAAATTTGCAGGAATTGA+AGG - chr7_4:43079561-43079580 Msa1155210:intron 25.0%
!! TTCATTTTCTTGAGATATTG+AGG + chr7_4:43079611-43079630 None:intergenic 25.0%
! AGAACTCTGTAATATTTAAC+TGG + chr7_4:43079666-43079685 None:intergenic 25.0%
!!! TTTTGTTTACTTTTGGTTGT+CGG + chr7_4:43079691-43079710 None:intergenic 25.0%
! AGTAAACAAAATCCAAAACA+TGG - chr7_4:43079700-43079719 Msa1155210:intron 25.0%
!!! CTAACAGATTTTGGAATATT+AGG + chr7_4:43079802-43079821 None:intergenic 25.0%
! CTAATATTCCAAAATCTGTT+AGG - chr7_4:43079800-43079819 Msa1155210:CDS 25.0%
!! GTGTATAAAATATGCTTTTG+AGG - chr7_4:43079848-43079867 Msa1155210:CDS 25.0%
!!! TAAAATATGCTTTTGAGGAT+TGG - chr7_4:43079853-43079872 Msa1155210:CDS 25.0%
!!! ATATTAACTGAGTGTTGAAA+AGG - chr7_4:43079917-43079936 Msa1155210:exon 25.0%
! GTCATGAACACAAAATTAAA+AGG + chr7_4:43079954-43079973 None:intergenic 25.0%
! ATGTGTAGTTAACAATAGTT+TGG - chr7_4:43079997-43080016 Msa1155210:five_prime_UTR 25.0%
! CTTGACATCAAATTTATAAG+AGG - chr7_4:43080055-43080074 Msa1155210:five_prime_UTR 25.0%
! TTACTGTTAGGTTACGTTTT+TGG + chr7_4:43075142-43075161 None:intergenic 30.0%
TTCTGCTTAATCACGATAAT+GGG + chr7_4:43075228-43075247 None:intergenic 30.0%
TTTCTGCTTAATCACGATAA+TGG + chr7_4:43075229-43075248 None:intergenic 30.0%
ATTAATTCAATCATGGGTGT+TGG - chr7_4:43075253-43075272 Msa1155210:three_prime_UTR 30.0%
TGAAACAAAAAGACAGTGAA+GGG + chr7_4:43075476-43075495 None:intergenic 30.0%
ATGAAACAAAAAGACAGTGA+AGG + chr7_4:43075477-43075496 None:intergenic 30.0%
!! TTCACTGTCTTTTTGTTTCA+TGG - chr7_4:43075476-43075495 Msa1155210:CDS 30.0%
ACACTCAAACATAGCAAAAA+AGG + chr7_4:43075623-43075642 None:intergenic 30.0%
!! CGTGTGAAATTTGATTTTGT+TGG - chr7_4:43075700-43075719 Msa1155210:intron 30.0%
TATGGTATAACAGCAATTTG+AGG - chr7_4:43075792-43075811 Msa1155210:intron 30.0%
!!! TGATGATTTTAGCTTCTTTG+TGG - chr7_4:43075833-43075852 Msa1155210:intron 30.0%
ACACTCAAACATAACCAAAA+AGG + chr7_4:43075961-43075980 None:intergenic 30.0%
!!! TTTTTGGTTATGTTTGAGTG+TGG - chr7_4:43075960-43075979 Msa1155210:CDS 30.0%
TGGTTCAAAACACAATTTGA+AGG - chr7_4:43076249-43076268 Msa1155210:CDS 30.0%
!! TTGGTAGTTTTTGAATTCAG+TGG - chr7_4:43076301-43076320 Msa1155210:CDS 30.0%
TATATCTTATGTCAGAGTTC+AGG - chr7_4:43076756-43076775 Msa1155210:intron 30.0%
CCGATTAACATATAGCTATA+AGG + chr7_4:43076877-43076896 None:intergenic 30.0%
CATGACCTTCACTATTTAAT+TGG + chr7_4:43076971-43076990 None:intergenic 30.0%
!!! TTTTCTGGCTATATCTGTAT+AGG - chr7_4:43077268-43077287 Msa1155210:intron 30.0%
! TTTTCTTGATATGACTGATG+AGG + chr7_4:43077322-43077341 None:intergenic 30.0%
TTGGAAAAGACAAACTATCA+TGG + chr7_4:43077364-43077383 None:intergenic 30.0%
TGTCATACATTGCTAAGTTA+CGG + chr7_4:43077393-43077412 None:intergenic 30.0%
TTTAGATTAATAGCTGAGCT+TGG - chr7_4:43077548-43077567 Msa1155210:intron 30.0%
AGAGGATCATTATAATTCTC+TGG + chr7_4:43077607-43077626 None:intergenic 30.0%
AGAGAATTATAATGATCCTC+TGG - chr7_4:43077606-43077625 Msa1155210:intron 30.0%
!! AATTCGAAAAGTATTACCAG+AGG + chr7_4:43077625-43077644 None:intergenic 30.0%
AACTTTCCAAAATACAAGAG+GGG + chr7_4:43077665-43077684 None:intergenic 30.0%
CAACTTTCCAAAATACAAGA+GGG + chr7_4:43077666-43077685 None:intergenic 30.0%
TCAACTTTCCAAAATACAAG+AGG + chr7_4:43077667-43077686 None:intergenic 30.0%
GACATATTGTAGCATTCAAA+CGG + chr7_4:43077726-43077745 None:intergenic 30.0%
AATATGTCAGATATTGAAGC+TGG - chr7_4:43077738-43077757 Msa1155210:intron 30.0%
ATATGTCAGATATTGAAGCT+GGG - chr7_4:43077739-43077758 Msa1155210:intron 30.0%
! ATATATGCATTTTACTCGGA+AGG + chr7_4:43077919-43077938 None:intergenic 30.0%
GTTTCTTTACATGAATGGAA+TGG + chr7_4:43077969-43077988 None:intergenic 30.0%
CTATGGTTTCTTTACATGAA+TGG + chr7_4:43077974-43077993 None:intergenic 30.0%
GAGAAAGTGATAATAGAAAC+TGG - chr7_4:43078008-43078027 Msa1155210:intron 30.0%
CTATGATATAGGTGTAGAAT+AGG + chr7_4:43078065-43078084 None:intergenic 30.0%
! TTTTCATTTCCACTGTTTCA+TGG + chr7_4:43078100-43078119 None:intergenic 30.0%
CATTAAAGCTGAGGAAAATA+TGG - chr7_4:43078233-43078252 Msa1155210:CDS 30.0%
GAGGAAAATATGGATATTGA+CGG - chr7_4:43078243-43078262 Msa1155210:CDS 30.0%
AGGAAAATATGGATATTGAC+GGG - chr7_4:43078244-43078263 Msa1155210:CDS 30.0%
!!! GTGAGTTTGTTTTGTATTTG+GGG + chr7_4:43078274-43078293 None:intergenic 30.0%
!!! CAGTGAGTTTGTTTTGTATT+TGG + chr7_4:43078276-43078295 None:intergenic 30.0%
! TGATTGCAATTCTTGTTGTA+TGG - chr7_4:43078407-43078426 Msa1155210:intron 30.0%
ATGACAGAATAGGAAACATA+AGG - chr7_4:43078597-43078616 Msa1155210:CDS 30.0%
AGCAGAAAAAGATGGAAAAT+TGG - chr7_4:43078620-43078639 Msa1155210:CDS 30.0%
ATGTATCTATGCAATGACAA+TGG - chr7_4:43078706-43078725 Msa1155210:intron 30.0%
!!! AATGACAATGGTTACTTTTC+CGG - chr7_4:43078718-43078737 Msa1155210:intron 30.0%
! TTTTAAACTTCCATCAGAAC+TGG - chr7_4:43078923-43078942 Msa1155210:intron 30.0%
TTTAAACTTCCATCAGAACT+GGG - chr7_4:43078924-43078943 Msa1155210:intron 30.0%
!! AAATATTGCCTCTAAAACTC+CGG - chr7_4:43079125-43079144 Msa1155210:intron 30.0%
TCTGTTGACAGATGAAAATA+TGG - chr7_4:43079260-43079279 Msa1155210:intron 30.0%
ATGAAAATATGGACCTTGTT+GGG - chr7_4:43079271-43079290 Msa1155210:intron 30.0%
TGATTCATAACCAACAAAAG+TGG + chr7_4:43079383-43079402 None:intergenic 30.0%
! TTTAATGCCGCTTAATTAAG+TGG + chr7_4:43079447-43079466 None:intergenic 30.0%
ATTTATATCTCAACACGGAA+TGG + chr7_4:43079539-43079558 None:intergenic 30.0%
! TTTTCTTGAGATATTGAGGT+CGG + chr7_4:43079607-43079626 None:intergenic 30.0%
!! TTTGTTTACTTTTGGTTGTC+GGG + chr7_4:43079690-43079709 None:intergenic 30.0%
! TAATTTTGTGTTCATGACCA+AGG - chr7_4:43079956-43079975 Msa1155210:five_prime_UTR 30.0%
! AATTTTGTGTTCATGACCAA+GGG - chr7_4:43079957-43079976 Msa1155210:five_prime_UTR 30.0%
AGGTTTCGTATGTTACTGTT+AGG + chr7_4:43075154-43075173 None:intergenic 35.0%
AAACCTTCATTGCGTGAATA+GGG + chr7_4:43075304-43075323 None:intergenic 35.0%
AAAACCTTCATTGCGTGAAT+AGG + chr7_4:43075305-43075324 None:intergenic 35.0%
!!! ACCTCAGACTCACTTTTTTT+CGG - chr7_4:43075416-43075435 Msa1155210:CDS 35.0%
GACGATTAATCTCTTCTCAA+AGG - chr7_4:43075438-43075457 Msa1155210:CDS 35.0%
TTGTGTGTTGTGTTTGAGTA+TGG - chr7_4:43075774-43075793 Msa1155210:intron 35.0%
TGTGGTTCAACAGCAATTTA+AGG - chr7_4:43075978-43075997 Msa1155210:CDS 35.0%
!!! GAGATTGTTTTGTTTTGGGT+TGG - chr7_4:43076082-43076101 Msa1155210:CDS 35.0%
TCAAATTGCGCCATAATGTT+TGG - chr7_4:43076167-43076186 Msa1155210:CDS 35.0%
! AGTTTTTGAATTCAGTGGAG+TGG - chr7_4:43076306-43076325 Msa1155210:intron 35.0%
!! TTTAGTCTTGTGTGTTGAGT+TGG - chr7_4:43076370-43076389 Msa1155210:intron 35.0%
TGGTATAGAACAGTCAAACT+AGG - chr7_4:43076390-43076409 Msa1155210:intron 35.0%
GGTATAGAACAGTCAAACTA+GGG - chr7_4:43076391-43076410 Msa1155210:intron 35.0%
CGTTAATTCTTTCACCTTGA+TGG - chr7_4:43076649-43076668 Msa1155210:intron 35.0%
TACTTTCCATATGTGGATTC+TGG - chr7_4:43076804-43076823 Msa1155210:CDS 35.0%
GAAAAACCAGAATCCACATA+TGG + chr7_4:43076813-43076832 None:intergenic 35.0%
GCTATATGTTAATCGGTGAT+AGG - chr7_4:43076881-43076900 Msa1155210:CDS 35.0%
TGTGCCCAATTAAATAGTGA+AGG - chr7_4:43076963-43076982 Msa1155210:CDS 35.0%
AGCTGTAAACTAAGCAAAGA+TGG + chr7_4:43077177-43077196 None:intergenic 35.0%
! TGCTAAGTTACGGGAATTTT+TGG + chr7_4:43077383-43077402 None:intergenic 35.0%
GTCATACATTGCTAAGTTAC+GGG + chr7_4:43077392-43077411 None:intergenic 35.0%
CAGATGGTATAATGTGAGTA+TGG + chr7_4:43077500-43077519 None:intergenic 35.0%
!! TGTATTTTGGAAAGTTGACG+TGG - chr7_4:43077669-43077688 Msa1155210:intron 35.0%
CCAAAAGAGAGATAGCTATT+AGG + chr7_4:43077785-43077804 None:intergenic 35.0%
! CCTAATAGCTATCTCTCTTT+TGG - chr7_4:43077782-43077801 Msa1155210:intron 35.0%
! ATAGCTATCTCTCTTTTGGT+TGG - chr7_4:43077786-43077805 Msa1155210:intron 35.0%
GGAAATGATTACGATTTGAG+TGG - chr7_4:43077807-43077826 Msa1155210:intron 35.0%
CAATGCAGATTACATGAGAT+AGG - chr7_4:43078180-43078199 Msa1155210:CDS 35.0%
AGATTACATGAGATAGGCAA+AGG - chr7_4:43078186-43078205 Msa1155210:CDS 35.0%
GATTACATGAGATAGGCAAA+GGG - chr7_4:43078187-43078206 Msa1155210:CDS 35.0%
TCCTATTGACATTAAAGCTG+AGG - chr7_4:43078224-43078243 Msa1155210:CDS 35.0%
! TCCTCAGCTTTAATGTCAAT+AGG + chr7_4:43078228-43078247 None:intergenic 35.0%
! AAATGATCTCTTTTGTTGCC+CGG + chr7_4:43078315-43078334 None:intergenic 35.0%
! TTCATGTGAATTTTGTGTCG+CGG - chr7_4:43078341-43078360 Msa1155210:intron 35.0%
! CAATCACATTTAAAACCCTC+TGG + chr7_4:43078393-43078412 None:intergenic 35.0%
! GCAATTCTTGTTGTATGGTA+TGG - chr7_4:43078412-43078431 Msa1155210:intron 35.0%
AAGTGCTCTGTCATCATATA+TGG - chr7_4:43078480-43078499 Msa1155210:intron 35.0%
ACATAAGGAGCAGAAAAAGA+TGG - chr7_4:43078612-43078631 Msa1155210:CDS 35.0%
AATCTGTGACAAGATTGCAA+AGG - chr7_4:43078651-43078670 Msa1155210:CDS 35.0%
! AAAGGAGCCAAATTTTCCAA+AGG - chr7_4:43078669-43078688 Msa1155210:CDS 35.0%
TTCATCACAGTTAAACGTAC+CGG + chr7_4:43078740-43078759 None:intergenic 35.0%
! ACTTTGTTTGCAGTGAATGA+TGG - chr7_4:43078853-43078872 Msa1155210:intron 35.0%
AAGAAGATGGTTGACATCAT+AGG + chr7_4:43078979-43078998 None:intergenic 35.0%
AACCATCTTCTTGAGAGAAA+TGG - chr7_4:43078987-43079006 Msa1155210:intron 35.0%
!! CAACCGATAGTTTGCTATTT+GGG - chr7_4:43079019-43079038 Msa1155210:intron 35.0%
! ATCAGTTTTACGTTGTCAAG+TGG - chr7_4:43079088-43079107 Msa1155210:intron 35.0%
!! TTTATTTGCCGGAGTTTTAG+AGG + chr7_4:43079136-43079155 None:intergenic 35.0%
AAAACTCCGGCAAATAAATC+TGG - chr7_4:43079138-43079157 Msa1155210:intron 35.0%
TCCATCTTCTTCACAAATCT+GGG + chr7_4:43079232-43079251 None:intergenic 35.0%
ATCCATCTTCTTCACAAATC+TGG + chr7_4:43079233-43079252 None:intergenic 35.0%
GATGAAAATATGGACCTTGT+TGG - chr7_4:43079270-43079289 Msa1155210:intron 35.0%
TGAAAATATGGACCTTGTTG+GGG - chr7_4:43079272-43079291 Msa1155210:intron 35.0%
TAATAAATACCTGTTCCTGC+CGG + chr7_4:43079326-43079345 None:intergenic 35.0%
!! CAACTATCATCCACTTTTGT+TGG - chr7_4:43079370-43079389 Msa1155210:intron 35.0%
GCTAATGATTAGCATCTAAC+TGG - chr7_4:43079412-43079431 Msa1155210:intron 35.0%
!!! TTTTGAGTTTGGTGATGTTG+AGG + chr7_4:43079638-43079657 None:intergenic 35.0%
TCAACATCACCAAACTCAAA+AGG - chr7_4:43079637-43079656 Msa1155210:intron 35.0%
CACACTACTAGTCAAACAAA+AGG + chr7_4:43079831-43079850 None:intergenic 35.0%
!! AATTCAATCATGGGTGTTGG+TGG - chr7_4:43075256-43075275 Msa1155210:three_prime_UTR 40.0%
! AAAAAAGTGAGTCTGAGGTG+AGG + chr7_4:43075415-43075434 None:intergenic 40.0%
TCCGAAAAAAAGTGAGTCTG+AGG + chr7_4:43075420-43075439 None:intergenic 40.0%
AATTCAATCAGCCCCAATTG+CGG + chr7_4:43075653-43075672 None:intergenic 40.0%
TAGAACAGTCAAACTAGGGA+TGG - chr7_4:43076395-43076414 Msa1155210:intron 40.0%
! TTTGTAGTTTGGAGCGTTTC+CGG - chr7_4:43076462-43076481 Msa1155210:CDS 40.0%
! CCAGGATTGCTAGATTTTTC+CGG - chr7_4:43076527-43076546 Msa1155210:CDS 40.0%
! AAGATGTGTTCAAGAGTGTG+TGG - chr7_4:43076624-43076643 Msa1155210:intron 40.0%
! GTGACTTGTGATAACCATCA+AGG + chr7_4:43076666-43076685 None:intergenic 40.0%
TGCACTTAGTTGCTAAAACG+TGG - chr7_4:43076697-43076716 Msa1155210:intron 40.0%
!! TAGGAACTTGCTAAGCTACT+TGG - chr7_4:43076900-43076919 Msa1155210:CDS 40.0%
!! AGGAACTTGCTAAGCTACTT+GGG - chr7_4:43076901-43076920 Msa1155210:CDS 40.0%
ATTCCTGTACTGAAGGCTAA+AGG - chr7_4:43076924-43076943 Msa1155210:CDS 40.0%
ACAGTGATGCATTCCTCTTT+GGG - chr7_4:43077012-43077031 Msa1155210:intron 40.0%
TAATGCATTTAGCCCCAAAG+AGG + chr7_4:43077028-43077047 None:intergenic 40.0%
!! CGGTCACTTACTTTGGAATT+GGG + chr7_4:43077065-43077084 None:intergenic 40.0%
!! ACGGTCACTTACTTTGGAAT+TGG + chr7_4:43077066-43077085 None:intergenic 40.0%
! GCCAGAAAACTCAACTTGTT+GGG + chr7_4:43077257-43077276 None:intergenic 40.0%
AGCCAGAAAACTCAACTTGT+TGG + chr7_4:43077258-43077277 None:intergenic 40.0%
GACAAACTATCATGGAAGAC+TGG + chr7_4:43077356-43077375 None:intergenic 40.0%
ATGTGAGTATGGCAAGATGA+GGG + chr7_4:43077489-43077508 None:intergenic 40.0%
AATGTGAGTATGGCAAGATG+AGG + chr7_4:43077490-43077509 None:intergenic 40.0%
!! GTATGCATGCTTTTTGCAGA+TGG + chr7_4:43077516-43077535 None:intergenic 40.0%
AGATTAATAGCTGAGCTTGG+TGG - chr7_4:43077551-43077570 Msa1155210:intron 40.0%
! TTCCTACCCCTCTTGTATTT+TGG - chr7_4:43077656-43077675 Msa1155210:intron 40.0%
TTCCAAAATACAAGAGGGGT+AGG + chr7_4:43077661-43077680 None:intergenic 40.0%
! TTCTTTTCCTTTCTGCATGC+AGG - chr7_4:43077698-43077717 Msa1155210:intron 40.0%
TACGATTTGAGTGGTGTTCA+AGG - chr7_4:43077816-43077835 Msa1155210:intron 40.0%
ACGATTTGAGTGGTGTTCAA+GGG - chr7_4:43077817-43077836 Msa1155210:intron 40.0%
CTCTCAAATTCTCTCAGCTA+TGG + chr7_4:43077991-43078010 None:intergenic 40.0%
TCATGTTAGCCATGAAACAG+TGG - chr7_4:43078088-43078107 Msa1155210:intron 40.0%
AAACTCACTGCTCATTCTGT+GGG - chr7_4:43078286-43078305 Msa1155210:intron 40.0%
AGGTTGCTTGAAAAAACCAG+AGG - chr7_4:43078374-43078393 Msa1155210:intron 40.0%
GGTTGCTTGAAAAAACCAGA+GGG - chr7_4:43078375-43078394 Msa1155210:intron 40.0%
CAGTGACAAAATCGATCTAG+AGG + chr7_4:43078438-43078457 None:intergenic 40.0%
TCAACCAGAAGGTCCATATT+CGG + chr7_4:43078901-43078920 None:intergenic 40.0%
ATAATCCGCCGAATGTATGA+CGG + chr7_4:43078952-43078971 None:intergenic 40.0%
AGCCATTTCTCTCAAGAAGA+TGG + chr7_4:43078992-43079011 None:intergenic 40.0%
CCAAATAGCAAACTATCGGT+TGG + chr7_4:43079021-43079040 None:intergenic 40.0%
!! CCAACCGATAGTTTGCTATT+TGG - chr7_4:43079018-43079037 Msa1155210:intron 40.0%
CTGCCCAAATAGCAAACTAT+CGG + chr7_4:43079025-43079044 None:intergenic 40.0%
AAACGTGTGAAGACGAGATA+CGG - chr7_4:43079063-43079082 Msa1155210:intron 40.0%
TGCATGCCAGATTTATTTGC+CGG + chr7_4:43079147-43079166 None:intergenic 40.0%
! GCATGATGTTGATGAAACAG+TGG - chr7_4:43079182-43079201 Msa1155210:intron 40.0%
CCATCTTCTTCACAAATCTG+GGG + chr7_4:43079231-43079250 None:intergenic 40.0%
CTTACGCAGAAGAAGTGAAA+AGG - chr7_4:43079298-43079317 Msa1155210:intron 40.0%
CAGAAGAAGTGAAAAGGTTC+CGG - chr7_4:43079304-43079323 Msa1155210:intron 40.0%
!!! AACTGGACACCTTTTGAGTT+TGG + chr7_4:43079649-43079668 None:intergenic 40.0%
! GATGACTCTTCTCCATGTTT+TGG + chr7_4:43079715-43079734 None:intergenic 40.0%
!!! GTCTTGGCTGTCATTTTTCT+TGG + chr7_4:43079743-43079762 None:intergenic 40.0%
AAAAATGACAGCCAAGACAG+TGG - chr7_4:43079745-43079764 Msa1155210:CDS 40.0%
TTGTGGAACAGACACTGAAC+AGG + chr7_4:43075174-43075193 None:intergenic 45.0%
!! TGGGTGTTGGTGGTAATTTC+TGG - chr7_4:43075266-43075285 Msa1155210:three_prime_UTR 45.0%
!! GGGTGTTGGTGGTAATTTCT+GGG - chr7_4:43075267-43075286 Msa1155210:three_prime_UTR 45.0%
AAGCCCTATTCACGCAATGA+AGG - chr7_4:43075298-43075317 Msa1155210:three_prime_UTR 45.0%
TGAGGTGAGGTTTCTTGACA+GGG + chr7_4:43075402-43075421 None:intergenic 45.0%
AGTGTAGTTCAGCCGCAATT+GGG - chr7_4:43075638-43075657 Msa1155210:intron 45.0%
! CAAGCCTTATCCGACTAAGT+GGG - chr7_4:43076131-43076150 Msa1155210:CDS 45.0%
AGTGGAGTGGAGTTTGATAG+TGG - chr7_4:43076319-43076338 Msa1155210:intron 45.0%
TTTCCGGTGTTCGTTGTTGA+TGG - chr7_4:43076478-43076497 Msa1155210:CDS 45.0%
TTCCGGTGTTCGTTGTTGAT+GGG - chr7_4:43076479-43076498 Msa1155210:CDS 45.0%
TCCATCTCCGTTGAAATCAC+AGG - chr7_4:43076504-43076523 Msa1155210:CDS 45.0%
ATCCTGGCCTGTGATTTCAA+CGG + chr7_4:43076514-43076533 None:intergenic 45.0%
CCGGAAAAATCTAGCAATCC+TGG + chr7_4:43076530-43076549 None:intergenic 45.0%
! GCTAGATTTTTCCGGTCTTC+CGG - chr7_4:43076535-43076554 Msa1155210:CDS 45.0%
! CAAGCTAGTCGACTCAATTC+CGG + chr7_4:43076557-43076576 None:intergenic 45.0%
!! AATTGAGTCGACTAGCTTGC+CGG - chr7_4:43076558-43076577 Msa1155210:CDS 45.0%
GAAACACCTTCTTCAGCAAC+CGG + chr7_4:43076580-43076599 None:intergenic 45.0%
!! CTGAAGAAGGTGTTTCAGCT+GGG - chr7_4:43076584-43076603 Msa1155210:intron 45.0%
ACTTGGGATTCCTGTACTGA+AGG - chr7_4:43076917-43076936 Msa1155210:CDS 45.0%
! TCTCCTTTAGCCTTCAGTAC+AGG + chr7_4:43076930-43076949 None:intergenic 45.0%
AAGAGGAATGCATCACTGTC+AGG + chr7_4:43077011-43077030 None:intergenic 45.0%
GACAGTGATGCATTCCTCTT+TGG - chr7_4:43077011-43077030 Msa1155210:intron 45.0%
CAGTGATGCATTCCTCTTTG+GGG - chr7_4:43077013-43077032 Msa1155210:intron 45.0%
ATGACGACGGTCACTTACTT+TGG + chr7_4:43077072-43077091 None:intergenic 45.0%
!! AACTCAACTTGTTGGGCACA+GGG + chr7_4:43077250-43077269 None:intergenic 45.0%
!! AAACTCAACTTGTTGGGCAC+AGG + chr7_4:43077251-43077270 None:intergenic 45.0%
!! GCCCAACAAGTTGAGTTTTC+TGG - chr7_4:43077253-43077272 Msa1155210:intron 45.0%
CTATCATGGAAGACTGGATG+AGG + chr7_4:43077350-43077369 None:intergenic 45.0%
GAACTAACAGAAGTCTGACG+CGG + chr7_4:43077445-43077464 None:intergenic 45.0%
TCAGATATTGAAGCTGGGCT+TGG - chr7_4:43077744-43077763 Msa1155210:intron 45.0%
TTGAGTGGTGTTCAAGGGAT+CGG - chr7_4:43077822-43077841 Msa1155210:intron 45.0%
CAAACTCACTGCTCATTCTG+TGG - chr7_4:43078285-43078304 Msa1155210:intron 45.0%
! TGTGAATTTTGTGTCGCGGA+TGG - chr7_4:43078345-43078364 Msa1155210:intron 45.0%
!! ATGATGGACCTCAGATCTCA+TGG - chr7_4:43078869-43078888 Msa1155210:intron 45.0%
! TGATGGACCTCAGATCTCAT+GGG - chr7_4:43078870-43078889 Msa1155210:intron 45.0%
CTCATGGGAAAGACCGAATA+TGG - chr7_4:43078885-43078904 Msa1155210:intron 45.0%
AAGACCGAATATGGACCTTC+TGG - chr7_4:43078894-43078913 Msa1155210:intron 45.0%
ACTGGGATCCGTCATACATT+CGG - chr7_4:43078941-43078960 Msa1155210:intron 45.0%
TGTCAAGTGGAAACGTGCAA+TGG - chr7_4:43079101-43079120 Msa1155210:intron 45.0%
GTCAAGTGGAAACGTGCAAT+GGG - chr7_4:43079102-43079121 Msa1155210:intron 45.0%
CCCCAGATTTGTGAAGAAGA+TGG - chr7_4:43079228-43079247 Msa1155210:intron 45.0%
GCGGCATTAAACCCCTTAAA+TGG - chr7_4:43079456-43079475 Msa1155210:intron 45.0%
GGACTTGACGATTTCCTCTT+TGG + chr7_4:43079781-43079800 None:intergenic 45.0%
!!! TTTTTTATTATATTATCAAA+AGG + chr7_4:43075880-43075899 None:intergenic 5.0%
GAGGTGAGGTTTCTTGACAG+GGG + chr7_4:43075401-43075420 None:intergenic 50.0%
CTGAGGTGAGGTTTCTTGAC+AGG + chr7_4:43075403-43075422 None:intergenic 50.0%
GAGTGTAGTTCAGCCGCAAT+TGG - chr7_4:43075637-43075656 Msa1155210:intron 50.0%
GTGTAGTTCAGCCGCAATTG+GGG - chr7_4:43075639-43075658 Msa1155210:intron 50.0%
CCACTTAGTCGGATAAGGCT+TGG + chr7_4:43076133-43076152 None:intergenic 50.0%
! CCAAGCCTTATCCGACTAAG+TGG - chr7_4:43076130-43076149 Msa1155210:CDS 50.0%
CCTTATCCGACTAAGTGGGT+CGG - chr7_4:43076135-43076154 Msa1155210:CDS 50.0%
ATGTAGCCGACCCACTTAGT+CGG + chr7_4:43076144-43076163 None:intergenic 50.0%
GTCCCATCAACAACGAACAC+CGG + chr7_4:43076484-43076503 None:intergenic 50.0%
GCCTGTGATTTCAACGGAGA+TGG + chr7_4:43076508-43076527 None:intergenic 50.0%
TCGACTCAATTCCGGAAGAC+CGG + chr7_4:43076549-43076568 None:intergenic 50.0%
!! GCTGAAGAAGGTGTTTCAGC+TGG - chr7_4:43076583-43076602 Msa1155210:intron 50.0%
!! AAGAAGGTGTTTCAGCTGGG+AGG - chr7_4:43076587-43076606 Msa1155210:intron 50.0%
AACGGTTCCTGCATGCAGAA+AGG + chr7_4:43077708-43077727 None:intergenic 50.0%
AAGCTGGGCTTGGATTGAAG+AGG - chr7_4:43077754-43077773 Msa1155210:intron 50.0%
GGTCTTTCCCATGAGATCTG+AGG + chr7_4:43078880-43078899 None:intergenic 50.0%
!! ATGACGGATCCCAGTTCTGA+TGG + chr7_4:43078936-43078955 None:intergenic 50.0%
AGAAGTGAAAAGGTTCCGGC+AGG - chr7_4:43079308-43079327 Msa1155210:intron 50.0%
AATGACAGCCAAGACAGTGG+AGG - chr7_4:43079748-43079767 Msa1155210:CDS 50.0%
!! GTTTTGAGCCTCCACTGTCT+TGG + chr7_4:43079759-43079778 None:intergenic 50.0%
GTGGAGGCTCAAAACCAAAG+AGG - chr7_4:43079764-43079783 Msa1155210:CDS 50.0%
! AGGCGACGCCTAACAGATTT+TGG + chr7_4:43079811-43079830 None:intergenic 50.0%
CACACTGAACTAACTGCCCT+TGG + chr7_4:43079976-43079995 None:intergenic 50.0%
CCGACCCACTTAGTCGGATA+AGG + chr7_4:43076138-43076157 None:intergenic 55.0%
GACTAAGTGGGTCGGCTACA+TGG - chr7_4:43076143-43076162 Msa1155210:CDS 55.0%
CTCCGTTGAAATCACAGGCC+AGG - chr7_4:43076509-43076528 Msa1155210:CDS 55.0%
! AGCTTGCCGGTTGCTGAAGA+AGG - chr7_4:43076571-43076590 Msa1155210:intron 55.0%
GGCAAGATGAGGGCTCACAA+TGG + chr7_4:43077479-43077498 None:intergenic 55.0%
CTGCTCATTCTGTGGGCATC+CGG - chr7_4:43078293-43078312 Msa1155210:intron 55.0%
TGCTCATTCTGTGGGCATCC+GGG - chr7_4:43078294-43078313 Msa1155210:intron 55.0%
TGTGTCGCGGATGGCAATGA+AGG - chr7_4:43078354-43078373 Msa1155210:intron 55.0%
GGGATCCGTCATACATTCGG+CGG - chr7_4:43078944-43078963 Msa1155210:intron 55.0%
GAAAAGGTTCCGGCAGGAAC+AGG - chr7_4:43079314-43079333 Msa1155210:intron 55.0%
CTGCGTAAGCAGCCCCAACA+AGG + chr7_4:43079287-43079306 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 43075104 43080083 43075104 ID=Msa1155210;Name=Msa1155210
chr7_4 mRNA 43075104 43080083 43075104 ID=Msa1155210-mRNA-1;Parent=Msa1155210;Name=Msa1155210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=161|1|1|1|1|1|8|240|613
chr7_4 exon 43075104 43075613 43075104 ID=Msa1155210-mRNA-1:exon:10735;Parent=Msa1155210-mRNA-1
chr7_4 exon 43075852 43076321 43075852 ID=Msa1155210-mRNA-1:exon:10734;Parent=Msa1155210-mRNA-1
chr7_4 exon 43076448 43076583 43076448 ID=Msa1155210-mRNA-1:exon:10733;Parent=Msa1155210-mRNA-1
chr7_4 exon 43076759 43076999 43076759 ID=Msa1155210-mRNA-1:exon:10732;Parent=Msa1155210-mRNA-1
chr7_4 exon 43077286 43077467 43077286 ID=Msa1155210-mRNA-1:exon:10731;Parent=Msa1155210-mRNA-1
chr7_4 exon 43078114 43078284 43078114 ID=Msa1155210-mRNA-1:exon:10730;Parent=Msa1155210-mRNA-1
chr7_4 exon 43078542 43078718 43078542 ID=Msa1155210-mRNA-1:exon:10729;Parent=Msa1155210-mRNA-1
chr7_4 exon 43079728 43080083 43079728 ID=Msa1155210-mRNA-1:exon:10728;Parent=Msa1155210-mRNA-1
chr7_4 five_prime_UTR 43079923 43080083 43079923 ID=Msa1155210-mRNA-1:five_prime_utr;Parent=Msa1155210-mRNA-1
chr7_4 CDS 43079728 43079922 43079728 ID=Msa1155210-mRNA-1:cds;Parent=Msa1155210-mRNA-1
chr7_4 CDS 43078542 43078718 43078542 ID=Msa1155210-mRNA-1:cds;Parent=Msa1155210-mRNA-1
chr7_4 CDS 43078114 43078284 43078114 ID=Msa1155210-mRNA-1:cds;Parent=Msa1155210-mRNA-1
chr7_4 CDS 43077286 43077467 43077286 ID=Msa1155210-mRNA-1:cds;Parent=Msa1155210-mRNA-1
chr7_4 CDS 43076759 43076999 43076759 ID=Msa1155210-mRNA-1:cds;Parent=Msa1155210-mRNA-1
chr7_4 CDS 43076448 43076583 43076448 ID=Msa1155210-mRNA-1:cds;Parent=Msa1155210-mRNA-1
chr7_4 CDS 43075852 43076321 43075852 ID=Msa1155210-mRNA-1:cds;Parent=Msa1155210-mRNA-1
chr7_4 CDS 43075344 43075613 43075344 ID=Msa1155210-mRNA-1:cds;Parent=Msa1155210-mRNA-1
chr7_4 three_prime_UTR 43075104 43075343 43075104 ID=Msa1155210-mRNA-1:three_prime_utr;Parent=Msa1155210-mRNA-1
Gene Sequence

>Msa1155210

ATGGGTGTTGGTGGTAATTTCTGGGAGTTGTTGAAGCCCTATTCACGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTATTGATTTATCGTTTTGGATTGTTCAGCATAACAATGCTATCAAAACCCCTGTCAAGAAACCTCACCTCAGACTCACTTTTTTTCGGACGATTAATCTCTTCTCAAAGTTTGGAGCGTTTCCGGTGTTCGTTGTTGATGGGACTCCATCTCCGTTGAAATCACAGGCCAGGATTGCTAGATTTTTCCGGTCTTCCGGAATTGAGTCGACTAGCTTGCCGGTTGCTGAAGAAGGTGTTTCAGCTGGGAGGAACAGTTCATTTTCAAGATGTGTTCAAGAGTGTGTGGAACTTGCTAAGCTACTTGGGATTCCTGTACTGAAGGCTAAAGGAGAAGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCATGCATCACACCTGACAGTGATGCATTCCTCTTTGGGGCTAAATGCATTATAAAATCTTTCTCTCCCAATTCCAAAGAACCGTTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACACCTAATAGCTATCTCTCTTTTGGTTGGAAATGATTACGATTTGAGTGGTGTTCAAGGGATCGGAATTGATAGTGCTCTTCGTTTTGTTCAAGCTTTTAGTGAAGATGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTTCAAGTTCCTATTGACATTAAAGCTGAGGAAAATATGGATATTGACGGGAACTCCCCAAATACAAAACAAACTCACTGCTCATTCTGTGGGCATCCGGGCAACAAAAGAGATCATTTGAAGTTTTCATGTGAATTTTGTGTCGCGGATGGCAATGAAGGTTGCTTGAAAAAACCAGAGGGTTTTAAATGTGATTGCAATTCTTGTTGTATGAATAGGAAACATAAGGAGCAGAAAAAGATGGAAAATTGGCACACAAAAATCTGTGACAAGATTGCAAAGGAGCCAAATTTTCCAAAGGATGAAATCATTGATATGTATCTATGCAATGACAATGGTTACTTTTCCGTGAATGATGGACCTCAGATCTCATGGGAAAGACCGAATATGGACCTTCTGGTTGATTTTTTAAACTTCCATCAGAACTGGGATCCGTCATACATTCGGCGGATTATGTTTCCTATGATGTCAACCATCTTCTTGAGAGAAATGGCTACAACTCCAACCGATAGTTTGCTATTTGGGCAGTTTGAGTTTGATTCTTTAAAACGTGTGAAGACGAGATACGGATATCAGTTTTACGTTGTCAAGTGGAAACGTGCAATGGGAAATATTGCCTCTAAAACTCCGGCAAATAAATCTGGCATGCAAGAAGATGTTGTAGAGCATGATGTTGATGAAACAGTGGATCTGCTAGACGATTGCGATTTTCCCCAGATTTGTGAAGAAGATGGATGTAGTTTTCTGTTGACAGATGAAAATATGGACCTTGTTGGGGCTGCTTACGCAGAAGAAGTGAAAAGGTTCCGGCAGGAACAGGAATTGAAGGACGCGAAACGAAAAAAGAATCCGACCTCAATATCTCAAGAAAATGAAAAGTCCTCAACATCACCAAACTCAAAAGGTGTCCAGTTAAATATTACAGAGTTCTTCCCGACAACCAAAAGTAAACAAAATCCAAAACATGGAGAAGAGTCATCATCATCCAAGAAAAATGACAGCCAAGACAGTGGAGGCTCAAAACCAAAGAGGAAATCGTCAAGTCCTAATATTCCAAAATCTGTTAGGCGTCGCCTTTTGTTTGACTAG

Protein sequence

>Msa1155210

MGVGGNFWELLKPYSRNEGFDFLRNKRVAIDLSFWIVQHNNAIKTPVKKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRNSSFSRCVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSFSPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDYDLSGVQGIGIDSALRFVQAFSEDDILNRLHEIGKGNAFQVPIDIKAEENMDIDGNSPNTKQTHCSFCGHPGNKRDHLKFSCEFCVADGNEGCLKKPEGFKCDCNSCCMNRKHKEQKKMENWHTKICDKIAKEPNFPKDEIIDMYLCNDNGYFSVNDGPQISWERPNMDLLVDFLNFHQNWDPSYIRRIMFPMMSTIFLREMATTPTDSLLFGQFEFDSLKRVKTRYGYQFYVVKWKRAMGNIASKTPANKSGMQEDVVEHDVDETVDLLDDCDFPQICEEDGCSFLLTDENMDLVGAAYAEEVKRFRQEQELKDAKRKKNPTSISQENEKSSTSPNSKGVQLNITEFFPTTKSKQNPKHGEESSSSKKNDSQDSGGSKPKRKSSSPNIPKSVRRRLLFD*