AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075740 MtrunA17_Chr1g0184691 99.444 360 2 0 1 360 1 360 0.0 746
Msa0075740 MtrunA17_Chr1g0147881 38.580 324 137 9 38 350 47 319 3.95e-57 189
Msa0075740 MtrunA17_Chr4g0053281 56.044 182 58 4 183 351 152 324 2.16e-55 184
Msa0075740 MtrunA17_Chr5g0401821 74.074 108 26 2 245 351 151 257 4.25e-53 176
Msa0075740 MtrunA17_Chr4g0071521 63.768 138 39 4 218 352 175 304 1.01e-51 174
Msa0075740 MtrunA17_Chr3g0139021 48.466 163 72 5 205 359 222 380 2.94e-40 146
Msa0075740 MtrunA17_Chr7g0228941 59.494 79 32 0 272 350 31 109 2.12e-31 115
Msa0075740 MtrunA17_Chr2g0284321 55.682 88 38 1 268 354 9 96 1.78e-27 107
Msa0075740 MtrunA17_Chr2g0293481 52.475 101 42 3 261 356 230 329 5.30e-26 108
Msa0075740 MtrunA17_Chr8g0379461 52.222 90 36 1 269 351 45 134 7.39e-26 103
Msa0075740 MtrunA17_Chr2g0319961 53.191 94 28 2 269 351 50 138 1.59e-25 103
Msa0075740 MtrunA17_Chr2g0289181 61.972 71 26 1 290 360 11 80 2.35e-25 102
Msa0075740 MtrunA17_Chr7g0248691 57.831 83 30 1 268 350 134 211 4.04e-25 103
Msa0075740 MtrunA17_Chr8g0348311 57.831 83 30 2 268 350 135 212 3.08e-23 99.0
Msa0075740 MtrunA17_Chr7g0270051 50.562 89 40 1 266 350 22 110 3.95e-23 97.1
Msa0075740 MtrunA17_Chr1g0202461 66.102 59 20 0 294 352 262 320 8.75e-22 95.5
Msa0075740 MtrunA17_Chr8g0387501 54.286 70 28 1 281 350 121 186 2.47e-19 86.7
Msa0075740 MtrunA17_Chr3g0099641 51.389 72 35 0 289 360 247 318 2.94e-19 89.0
Msa0075740 MtrunA17_Chr3g0101131 58.209 67 26 2 289 355 411 475 5.64e-19 88.2
Msa0075740 MtrunA17_Chr5g0445311 59.016 61 24 1 290 350 361 420 6.74e-19 87.8
Msa0075740 MtrunA17_Chr4g0042831 46.591 88 45 2 273 360 258 343 6.82e-19 87.0
Msa0075740 MtrunA17_Chr5g0418191 34.641 153 94 3 208 360 239 385 9.22e-19 87.0
Msa0075740 MtrunA17_Chr5g0418191 53.968 63 26 3 289 350 146 206 1.21e-12 68.6
Msa0075740 MtrunA17_Chr7g0270191 44.578 83 45 1 268 350 120 201 1.02e-18 85.5
Msa0075740 MtrunA17_Chr7g0270831 44.565 92 43 1 269 360 200 283 1.09e-18 87.0
Msa0075740 MtrunA17_Chr1g0150281 47.945 73 36 1 279 351 128 198 1.66e-18 84.7
Msa0075740 MtrunA17_Chr4g0051181 57.895 57 24 0 294 350 244 300 1.89e-18 86.3
Msa0075740 MtrunA17_Chr7g0249301 45.361 97 43 4 267 355 258 352 1.97e-18 85.9
Msa0075740 MtrunA17_Chr7g0249301 54.237 59 25 2 294 352 63 119 5.33e-12 66.6
Msa0075740 MtrunA17_Chr7g0218081 59.677 62 24 1 289 350 406 466 2.37e-18 86.3
Msa0075740 MtrunA17_Chr7g0218081 53.125 64 27 3 290 352 224 285 3.10e-13 70.9
Msa0075740 MtrunA17_Chr2g0288871 47.436 78 41 0 277 354 289 366 2.62e-18 86.3
Msa0075740 MtrunA17_Chr7g0238921 49.367 79 36 2 276 354 110 184 3.14e-18 84.3
Msa0075740 MtrunA17_Chr3g0136961 55.172 58 26 0 294 351 139 196 3.67e-18 84.0
Msa0075740 MtrunA17_Chr4g0001361 43.478 92 48 2 267 354 132 223 4.84e-18 84.0
Msa0075740 MtrunA17_Chr4g0004911 49.351 77 35 2 277 350 317 392 5.52e-18 85.1
Msa0075740 MtrunA17_Chr4g0004911 50.847 59 28 1 294 352 185 242 2.86e-13 70.9
Msa0075740 MtrunA17_Chr2g0322391 47.436 78 41 0 277 354 333 410 5.87e-18 85.1
Msa0075740 MtrunA17_Chr7g0263531 57.895 57 23 1 294 350 362 417 6.23e-18 84.7
Msa0075740 MtrunA17_Chr7g0263531 52.055 73 30 4 281 352 178 246 6.89e-15 75.5
Msa0075740 MtrunA17_Chr4g0074001 57.895 57 23 1 294 350 360 415 1.47e-17 84.0
Msa0075740 MtrunA17_Chr4g0025061 57.895 57 24 0 294 350 361 417 1.86e-17 83.6
Msa0075740 MtrunA17_Chr7g0243891 33.143 175 95 6 196 360 277 439 2.39e-17 83.2
Msa0075740 MtrunA17_Chr7g0243891 52.542 59 26 2 294 352 217 273 6.05e-12 66.6
Msa0075740 MtrunA17_Chr5g0432161 36.508 126 72 2 232 350 353 477 2.76e-17 83.2
Msa0075740 MtrunA17_Chr5g0432161 52.542 59 26 2 294 352 245 301 1.27e-12 68.9
Msa0075740 MtrunA17_Chr3g0106491 48.718 78 39 1 273 350 345 421 3.30e-17 82.8
Msa0075740 MtrunA17_Chr3g0106491 54.237 59 25 2 294 352 199 255 3.51e-13 70.5
Msa0075740 MtrunA17_Chr4g0051881 54.839 62 26 2 294 355 179 238 3.68e-17 81.6
Msa0075740 MtrunA17_Chr7g0216891 56.140 57 25 0 294 350 220 276 4.50e-17 82.4
Msa0075740 MtrunA17_Chr5g0443131 52.239 67 31 1 294 360 158 223 5.81e-17 80.5
Msa0075740 MtrunA17_Chr3g0079691 37.500 112 57 3 251 350 441 551 5.81e-17 82.4
Msa0075740 MtrunA17_Chr3g0079691 52.459 61 27 2 294 354 281 339 2.40e-12 68.2
Msa0075740 MtrunA17_Chr2g0333851 51.667 60 29 0 291 350 167 226 7.96e-17 80.1
Msa0075740 MtrunA17_Chr4g0075201 52.308 65 28 1 294 358 268 329 8.07e-17 81.6
Msa0075740 MtrunA17_Chr1g0150801 38.384 99 58 2 252 350 63 158 9.73e-17 77.0
Msa0075740 MtrunA17_Chr7g0249311 48.780 82 37 3 277 355 373 452 1.08e-16 81.6
Msa0075740 MtrunA17_Chr7g0249311 52.542 59 26 2 294 352 180 236 3.13e-11 64.7
Msa0075740 MtrunA17_Chr4g0060271 53.448 58 27 0 294 351 256 313 1.10e-16 81.3
Msa0075740 MtrunA17_Chr2g0302391 52.459 61 29 0 294 354 212 272 1.31e-16 80.5
Msa0075740 MtrunA17_Chr1g0150271 46.970 66 34 1 291 356 99 163 5.60e-16 77.0
Msa0075740 MtrunA17_Chr8g0335811 39.583 96 52 3 268 360 126 218 6.70e-16 76.3
Msa0075740 MtrunA17_Chr5g0447701 56.897 58 24 1 294 351 253 309 6.92e-16 78.2
Msa0075740 MtrunA17_Chr1g0188941 43.182 88 45 3 268 355 29 111 7.60e-16 73.2
Msa0075740 MtrunA17_Chr8g0383251 52.459 61 28 1 290 350 105 164 1.77e-15 73.9
Msa0075740 MtrunA17_Chr5g0418781 41.860 86 49 1 268 353 99 183 1.95e-15 75.9
Msa0075740 MtrunA17_Chr1g0194481 39.759 83 49 1 268 350 133 214 2.77e-15 75.9
Msa0075740 MtrunA17_Chr8g0383351 47.619 63 32 1 289 351 156 217 2.79e-15 74.3
Msa0075740 MtrunA17_Chr3g0126391 54.386 57 24 1 294 348 134 190 5.72e-15 75.1
Msa0075740 MtrunA17_Chr3g0129361 47.619 63 32 1 289 351 140 201 6.33e-15 73.2
Msa0075740 MtrunA17_Chr4g0025051 56.604 53 23 0 298 350 340 392 9.12e-15 75.5
Msa0075740 MtrunA17_Chr3g0129321 42.500 80 45 1 271 350 96 174 4.18e-14 70.5
Msa0075740 MtrunA17_Chr2g0294231 50.877 57 27 1 294 350 204 259 4.96e-14 72.8
Msa0075740 MtrunA17_Chr7g0275531 46.429 84 41 3 269 348 92 175 1.33e-13 70.9
Msa0075740 MtrunA17_Chr1g0189391 53.846 65 28 2 290 353 94 157 1.81e-13 70.5
Msa0075740 MtrunA17_Chr4g0068541 47.368 57 29 1 294 350 209 264 2.80e-13 70.5
Msa0075740 MtrunA17_Chr7g0248721 42.500 80 41 3 274 350 119 196 4.91e-13 67.8
Msa0075740 MtrunA17_Chr8g0347251 41.860 86 47 2 266 348 108 193 6.45e-13 68.9
Msa0075740 MtrunA17_Chr7g0224801 45.161 62 33 1 289 350 89 149 6.70e-13 66.2
Msa0075740 MtrunA17_Chr8g0387981 41.667 84 46 2 268 348 106 189 1.30e-12 68.2
Msa0075740 MtrunA17_Chr6g0485431 30.968 155 91 5 198 351 73 212 1.64e-12 67.8
Msa0075740 MtrunA17_Chr5g0402931 51.724 58 25 2 293 350 123 177 1.75e-12 65.5
Msa0075740 MtrunA17_Chr4g0024391 46.429 56 30 0 294 349 230 285 6.96e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075740 AT2G30590.1 56.104 385 131 15 1 356 1 376 3.64e-115 340
Msa0075740 AT3G04670.1 50.959 365 124 13 1 353 1 322 7.94e-104 309
Msa0075740 AT5G28650.1 47.790 362 140 9 1 353 1 322 2.23e-99 297
Msa0075740 AT3G04670.2 47.416 329 118 13 1 317 1 286 3.94e-75 234
Msa0075740 AT4G31550.1 51.087 184 60 6 180 350 137 303 1.37e-53 180
Msa0075740 AT4G31550.2 51.630 184 58 7 180 350 137 302 8.45e-53 177
Msa0075740 AT2G24570.1 56.376 149 51 3 214 350 154 300 1.11e-52 177
Msa0075740 AT4G24240.1 54.545 176 55 6 187 353 182 341 1.60e-52 177
Msa0075740 AT2G23320.1 70.000 110 29 2 245 351 190 298 1.48e-50 171
Msa0075740 AT1G29280.1 55.435 92 34 3 266 350 40 131 2.99e-27 108
Msa0075740 AT4G31550.3 44.218 147 51 7 180 313 137 265 5.17e-26 105
Msa0075740 AT3G58710.2 50.980 102 33 3 269 359 40 135 1.53e-25 104
Msa0075740 AT2G34830.1 49.524 105 47 2 257 356 174 277 2.39e-25 106
Msa0075740 AT4G24240.2 47.059 136 47 6 187 313 182 301 2.55e-25 104
Msa0075740 AT2G34830.2 49.524 105 47 2 257 356 183 286 2.78e-25 106
Msa0075740 AT3G58710.1 50.000 102 34 3 269 359 41 136 8.66e-25 102
Msa0075740 AT2G23320.2 66.667 72 20 2 245 313 190 260 9.35e-25 102
Msa0075740 AT4G01250.1 45.600 125 62 2 227 350 66 185 4.80e-24 100
Msa0075740 AT1G30650.1 52.874 87 36 1 269 350 188 274 8.54e-24 102
Msa0075740 AT5G52830.1 52.941 85 36 1 268 352 144 224 7.24e-22 95.5
Msa0075740 AT5G26170.1 52.308 65 30 1 289 353 109 172 1.18e-19 85.5
Msa0075740 AT4G23550.1 60.317 63 24 1 294 356 141 202 1.41e-19 88.6
Msa0075740 AT2G04880.2 58.209 67 27 1 288 354 278 343 3.01e-19 89.0
Msa0075740 AT4G18170.1 38.017 121 67 3 235 355 120 232 3.27e-19 87.4
Msa0075740 AT2G04880.1 58.209 67 27 1 288 354 302 367 3.45e-19 89.0
Msa0075740 AT5G07100.2 48.837 86 41 3 270 355 119 201 1.12e-18 84.0
Msa0075740 AT5G07100.2 48.529 68 31 2 285 352 19 82 1.30e-12 67.0
Msa0075740 AT5G07100.4 48.837 86 41 3 270 355 119 201 1.12e-18 84.0
Msa0075740 AT5G07100.4 48.529 68 31 2 285 352 19 82 1.30e-12 67.0
Msa0075740 AT5G07100.5 48.837 86 41 3 270 355 119 201 1.12e-18 84.0
Msa0075740 AT5G07100.5 48.529 68 31 2 285 352 19 82 1.30e-12 67.0
Msa0075740 AT5G07100.3 48.837 86 41 3 270 355 119 201 1.12e-18 84.0
Msa0075740 AT5G07100.3 48.529 68 31 2 285 352 19 82 1.30e-12 67.0
Msa0075740 AT1G13960.2 47.436 78 40 1 273 350 236 312 2.46e-18 85.5
Msa0075740 AT1G13960.2 56.452 62 24 3 290 350 72 131 2.11e-14 73.9
Msa0075740 AT2G38470.1 59.016 61 24 1 290 350 359 418 2.52e-18 86.7
Msa0075740 AT2G38470.1 54.237 59 25 2 294 352 185 241 3.44e-13 70.9
Msa0075740 AT4G26640.5 56.716 67 27 2 289 355 201 265 2.98e-18 85.5
Msa0075740 AT4G26640.6 56.716 67 27 2 289 355 201 265 2.98e-18 85.5
Msa0075740 AT4G26640.4 56.716 67 27 2 289 355 201 265 2.98e-18 85.5
Msa0075740 AT4G26640.3 56.716 67 27 2 289 355 201 265 2.98e-18 85.5
Msa0075740 AT4G04450.2 47.561 82 40 1 277 358 182 260 3.48e-18 85.9
Msa0075740 AT5G07100.1 48.837 86 41 3 270 355 212 294 4.13e-18 84.3
Msa0075740 AT5G07100.1 48.529 68 31 2 285 352 112 175 2.72e-12 67.4
Msa0075740 AT1G13960.1 44.211 95 39 2 269 350 372 465 4.29e-18 85.9
Msa0075740 AT1G13960.1 48.101 79 32 4 272 350 215 284 3.12e-14 74.3
Msa0075740 AT4G04450.1 47.561 82 40 1 277 358 276 354 4.39e-18 85.9
Msa0075740 AT4G26640.1 56.716 67 27 2 289 355 305 369 5.15e-18 85.5
Msa0075740 AT4G26640.2 56.716 67 27 2 289 355 377 441 5.77e-18 85.5
Msa0075740 AT1G68150.1 57.895 57 24 0 294 350 236 292 5.85e-18 84.7
Msa0075740 AT4G26640.7 56.716 67 27 2 289 355 337 401 5.91e-18 85.5
Msa0075740 AT5G45050.2 45.783 83 41 1 268 350 1131 1209 7.09e-18 85.9
Msa0075740 AT5G45050.1 45.783 83 41 1 268 350 1159 1237 7.87e-18 85.9
Msa0075740 AT5G45050.4 45.783 83 41 1 268 350 1020 1098 8.56e-18 85.5
Msa0075740 AT1G62300.1 44.186 86 40 1 269 354 296 373 1.79e-17 84.0
Msa0075740 AT4G22070.4 46.154 78 42 0 277 354 281 358 2.28e-17 84.0
Msa0075740 AT4G22070.3 46.154 78 42 0 277 354 281 358 2.28e-17 84.0
Msa0075740 AT4G22070.2 46.154 78 42 0 277 354 281 358 2.28e-17 84.0
Msa0075740 AT4G22070.1 46.154 78 42 0 277 354 281 358 2.28e-17 84.0
Msa0075740 AT1G29860.1 44.595 74 40 1 277 350 120 192 2.62e-17 81.6
Msa0075740 AT2G03340.1 46.154 78 41 1 273 350 395 471 2.88e-17 83.6
Msa0075740 AT2G03340.1 55.556 63 25 3 289 350 245 305 9.08e-14 72.8
Msa0075740 AT5G49520.1 56.140 57 24 1 294 350 222 277 2.94e-17 82.8
Msa0075740 AT4G01720.1 55.738 61 27 0 294 354 240 300 3.39e-17 83.2
Msa0075740 AT4G30935.1 56.140 57 24 1 294 350 332 387 3.61e-17 82.8
Msa0075740 AT5G15130.2 55.172 58 26 0 294 351 186 243 5.91e-17 82.4
Msa0075740 AT5G15130.1 55.172 58 26 0 294 351 228 285 6.12e-17 82.4
Msa0075740 AT4G31800.2 41.096 73 43 0 278 350 96 168 1.49e-16 78.6
Msa0075740 AT5G56270.1 49.351 77 35 2 277 350 468 543 1.55e-16 81.6
Msa0075740 AT5G56270.1 50.820 61 28 2 294 354 274 332 4.68e-11 64.7
Msa0075740 AT3G01080.1 47.436 78 40 1 273 350 286 362 1.93e-16 80.5
Msa0075740 AT3G01080.1 51.562 64 28 3 290 352 163 224 6.32e-13 70.1
Msa0075740 AT3G01080.2 47.436 78 40 1 273 350 324 400 1.97e-16 80.9
Msa0075740 AT3G01080.2 51.562 64 28 3 290 352 201 262 6.60e-13 70.1
Msa0075740 AT2G37260.3 43.137 102 52 2 249 350 230 325 2.19e-16 79.7
Msa0075740 AT2G37260.3 54.237 59 25 2 294 352 86 142 1.05e-12 68.9
Msa0075740 AT2G37260.2 43.137 102 52 2 249 350 228 323 2.19e-16 79.7
Msa0075740 AT2G37260.2 54.237 59 25 2 294 352 84 140 1.04e-12 68.9
Msa0075740 AT4G31800.1 41.096 73 43 0 278 350 161 233 2.36e-16 79.3
Msa0075740 AT2G40740.1 40.426 94 53 2 259 349 138 231 2.54e-16 79.0
Msa0075740 AT2G37260.1 43.137 102 52 2 249 350 310 405 3.03e-16 80.1
Msa0075740 AT2G37260.1 54.237 59 25 2 294 352 166 222 1.01e-12 69.3
Msa0075740 AT4G39410.1 41.860 86 46 2 269 351 196 280 3.78e-16 78.6
Msa0075740 AT2G40740.3 40.860 93 52 2 259 348 147 239 3.80e-16 78.6
Msa0075740 AT5G45260.1 46.237 93 38 4 269 356 1187 1272 3.94e-16 80.5
Msa0075740 AT5G43290.1 49.367 79 36 2 276 354 100 174 4.11e-16 78.2
Msa0075740 AT2G47260.1 40.964 83 48 1 268 350 149 230 8.31e-16 77.8
Msa0075740 AT5G46350.1 51.613 62 28 2 294 355 184 243 1.12e-15 77.4
Msa0075740 AT4G26440.1 46.914 81 41 2 274 354 353 431 1.15e-15 78.6
Msa0075740 AT4G26440.1 51.562 64 28 3 292 354 176 237 1.82e-11 65.9
Msa0075740 AT1G69310.4 41.176 85 49 1 269 353 123 206 1.20e-15 77.0
Msa0075740 AT1G69310.2 41.176 85 49 1 269 353 123 206 1.20e-15 77.0
Msa0075740 AT1G69310.1 41.176 85 49 1 269 353 123 206 1.20e-15 77.0
Msa0075740 AT3G62340.1 43.902 82 45 1 271 352 96 176 1.44e-15 76.6
Msa0075740 AT2G44745.1 38.298 94 52 3 270 360 119 209 1.55e-15 75.1
Msa0075740 AT1G80840.1 36.975 119 62 4 245 350 85 203 1.67e-15 76.6
Msa0075740 AT1G18860.1 54.386 57 26 0 294 350 240 296 1.90e-15 77.8
Msa0075740 AT1G55600.1 50.725 69 30 2 290 358 304 368 1.95e-15 77.8
Msa0075740 AT1G69810.1 46.988 83 35 2 269 350 187 261 4.28e-15 76.3
Msa0075740 AT1G69810.2 46.988 83 35 2 269 350 129 203 4.70e-15 75.9
Msa0075740 AT2G21900.1 56.140 57 24 1 294 350 110 165 6.23e-15 73.2
Msa0075740 AT2G25000.2 49.123 57 29 0 294 350 104 160 6.32e-15 73.9
Msa0075740 AT2G25000.4 49.123 57 29 0 294 350 104 160 6.32e-15 73.9
Msa0075740 AT5G41570.1 43.529 85 44 2 269 350 71 154 7.51e-15 72.4
Msa0075740 AT5G64810.1 49.180 61 30 1 290 350 107 166 1.06e-14 72.4
Msa0075740 AT2G25000.3 49.123 57 29 0 294 350 126 182 1.21e-14 73.2
Msa0075740 AT2G25000.1 49.123 57 29 0 294 350 147 203 1.44e-14 73.6
Msa0075740 AT2G46130.1 50.000 62 30 1 289 350 26 86 2.07e-14 69.3
Msa0075740 AT1G64000.1 38.095 84 51 1 267 350 88 170 2.32e-14 71.2
Msa0075740 AT2G30250.1 42.857 84 43 4 275 355 307 388 3.78e-14 73.6
Msa0075740 AT3G01970.1 47.619 63 32 1 289 351 61 122 9.85e-14 68.6
Msa0075740 AT3G01080.3 51.562 64 28 3 290 352 201 262 4.61e-13 69.7
Msa0075740 AT5G13080.1 45.161 62 33 1 289 350 63 123 7.61e-13 65.9
Msa0075740 AT4G11070.1 36.975 119 63 3 233 348 89 198 1.83e-12 67.8
Msa0075740 AT4G11070.2 36.975 119 63 3 233 348 57 166 2.05e-12 67.4
Msa0075740 AT4G23810.1 45.882 85 43 2 268 349 132 216 4.64e-12 66.6
Msa0075740 AT1G69310.3 38.824 85 47 2 269 353 123 202 1.95e-11 64.3
Msa0075740 AT4G12020.6 50.877 57 26 2 294 350 469 523 9.01e-11 63.9
Msa0075740 AT4G12020.8 50.877 57 26 2 294 350 469 523 9.01e-11 63.9
Msa0075740 AT1G66560.1 47.458 59 29 1 292 348 102 160 9.28e-11 62.0

Find 109 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGGGTTCTCTAAATTAA+TGG 0.160115 1_2:-51280472 Msa0075740:three_prime_UTR
TGGAAATTGTCTTCGGAAAA+TGG 0.189556 1_2:-51280452 None:intergenic
AGTATGTTATTAAACATTTC+AGG 0.193089 1_2:-51280489 Msa0075740:three_prime_UTR
CAAGAGAAAGTGGATTTCTT+AGG 0.196128 1_2:+51282088 None:intergenic
TAGAAAGAGAGAGGCTAAAA+TGG 0.224186 1_2:-51282442 Msa0075740:exon
CATGCAGTTCATGCATTTGC+AGG 0.256684 1_2:+51280734 None:intergenic
TTCTCTTGGAAACCCTTCTT+TGG 0.278708 1_2:-51282073 Msa0075740:CDS
AAAGTTGTGTCTTTGCTTCA+TGG 0.278912 1_2:-51282285 Msa0075740:CDS
TAGTAGCCTTGTCAAAATTA+AGG 0.303036 1_2:+51281848 None:intergenic
TAGAGTGAAGAGATCAATTA+AGG 0.339973 1_2:-51281504 Msa0075740:CDS
CAAAATTCAGTTCAGGAACT+TGG 0.342737 1_2:-51282117 Msa0075740:CDS
AGTGCTGGAGTATGTAAAAT+TGG 0.351484 1_2:-51280549 Msa0075740:three_prime_UTR
AACAACAGCAACAAGATTCT+AGG 0.351494 1_2:-51282901 Msa0075740:five_prime_UTR
GGAAGTTCCTTCCATTTGAT+TGG 0.353546 1_2:-51281748 Msa0075740:CDS
TGTGTCTTTGCTTCATGGTT+TGG 0.359375 1_2:-51282280 Msa0075740:CDS
GTTTGGATCATTCAAGAGTT+AGG 0.362142 1_2:-51282263 Msa0075740:CDS
AAGAAAGCAGTTTGAGGATA+AGG 0.371998 1_2:+51282216 None:intergenic
CTAAGAAATCCACTTTCTCT+TGG 0.374963 1_2:-51282087 Msa0075740:CDS
AGGAATTTAACTGTTGAAAC+TGG 0.385192 1_2:-51282330 Msa0075740:CDS
GTGATTATGCTCGCCTTCAT+AGG 0.392014 1_2:+51280775 None:intergenic
TGCTGTTGTTGATGTTTCCA+TGG 0.402615 1_2:+51282914 None:intergenic
CTATGATGAACTTGATCCCT+TGG 0.403158 1_2:+51282351 None:intergenic
TGTGAAGACCTCTATGTGAT+TGG 0.408353 1_2:-51280691 Msa0075740:three_prime_UTR
CAAGGGATCAAGTTCATCAT+AGG 0.426159 1_2:-51282350 Msa0075740:CDS
TTATGCCGCTGGTGTTCCTT+CGG 0.429874 1_2:+51281872 None:intergenic
TTTGAACTCAATTCCAAAGA+AGG 0.431276 1_2:+51282060 None:intergenic
CTATCCTCAAAATTCAGTTC+AGG 0.434300 1_2:-51282124 Msa0075740:CDS
TTGGGGAGTCGTTTATTTAG+AGG 0.434562 1_2:-51280594 Msa0075740:three_prime_UTR
CACCAACAATGTCGTCTACT+AGG 0.435790 1_2:-51281819 Msa0075740:CDS
CTTTGGAATTGAGTTCAAAC+GGG 0.435936 1_2:-51282056 Msa0075740:CDS
AAGAGAAAGTGGATTTCTTA+GGG 0.437226 1_2:+51282089 None:intergenic
CTCTCAACATGCTTCCTAGC+AGG 0.437995 1_2:+51280830 None:intergenic
AAATTAATGGAAATTGTCTT+CGG 0.444249 1_2:-51280459 Msa0075740:three_prime_UTR
TTTGGGTAGTAGCTTGGTTG+GGG 0.445798 1_2:-51280611 Msa0075740:three_prime_UTR
TAGGTAACCATTAGCATAGT+AGG 0.453570 1_2:+51280794 None:intergenic
GGGTGAGGAGAGCCCTTGAT+AGG 0.454162 1_2:+51281410 None:intergenic
TGCAGGTTGTGTTGGTACCT+TGG 0.458215 1_2:+51280751 None:intergenic
AGAAAGCAGTTTGAGGATAA+GGG 0.460093 1_2:+51282217 None:intergenic
TGGGGAGTCGTTTATTTAGA+GGG 0.465245 1_2:-51280593 Msa0075740:three_prime_UTR
AGATCGGAGCTCCAATCAAA+TGG 0.468483 1_2:+51281737 None:intergenic
ATGCTAATGGTTACCTATGA+AGG 0.471493 1_2:-51280788 Msa0075740:CDS
TTCCTCCATGAGTAATCATC+AGG 0.472648 1_2:+51281446 None:intergenic
GCATGAGAGGCTGCCCTGCT+AGG 0.472837 1_2:-51280844 Msa0075740:CDS
TCTTTGGAATTGAGTTCAAA+CGG 0.478409 1_2:-51282057 Msa0075740:CDS
GAGATTGAAGGTGTGAAGAG+AGG 0.479104 1_2:+51282941 None:intergenic
GGATGAGCCTACTATGCTAA+TGG 0.481224 1_2:-51280801 Msa0075740:CDS
TTTGTTGCTGCAGCTGCTGT+TGG 0.487273 1_2:+51281956 None:intergenic
AAAATTAAGGCTTATGCCGC+TGG 0.488025 1_2:+51281861 None:intergenic
TTCCATGGGTTTGAGATTGA+AGG 0.488676 1_2:+51282929 None:intergenic
GAAGGGTTTCCAAGAGAAAG+TGG 0.494949 1_2:+51282078 None:intergenic
GCAAGCTTGTTGCTGATAGC+AGG 0.495556 1_2:+51281479 None:intergenic
CAACCAAGCTACTACCCAAA+AGG 0.497245 1_2:+51280614 None:intergenic
GATTACTCATGGAGGAAGTA+CGG 0.498681 1_2:-51281440 Msa0075740:CDS
GTATGTTATTAAACATTTCA+GGG 0.504251 1_2:-51280488 Msa0075740:three_prime_UTR
GTATTCTTATGTGTGTGTGA+TGG 0.508109 1_2:-51282992 Msa0075740:five_prime_UTR
TTGAACTCAATTCCAAAGAA+GGG 0.509941 1_2:+51282061 None:intergenic
GTACGGGCAGAAGCCTATCA+AGG 0.510514 1_2:-51281423 Msa0075740:CDS
CATGCATTTGCAGGTTGTGT+TGG 0.511678 1_2:+51280743 None:intergenic
GCTGTTGTTGATGTTTCCAT+GGG 0.514488 1_2:+51282915 None:intergenic
GACCTAGTAGACGACATTGT+TGG 0.517470 1_2:+51281817 None:intergenic
AAGGTGTGAAGAGAGGACTT+TGG 0.523425 1_2:+51282948 None:intergenic
AAACTGGTGAAGCTGTGAAT+AGG 0.523498 1_2:-51282314 Msa0075740:CDS
GTCTTCACAAATAGAATGAC+GGG 0.526956 1_2:+51280705 None:intergenic
TGACAACAACAACTTCATCA+AGG 0.535436 1_2:-51282875 Msa0075740:intron
TTGTCTAAGAAAGCAGTTTG+AGG 0.538734 1_2:+51282210 None:intergenic
ACAACAGCAACAAGATTCTA+GGG 0.538954 1_2:-51282900 Msa0075740:five_prime_UTR
TCCCTCCTGATGATTACTCA+TGG 0.545497 1_2:-51281451 Msa0075740:CDS
AATGTCATTGCTCAAAGAAG+AGG 0.548282 1_2:-51281633 Msa0075740:intron
GGAAGCGTGGCTAACGTGGA+TGG 0.552072 1_2:-51281769 Msa0075740:CDS
ATATTTCAAGTGATGCGAGC+AGG 0.556506 1_2:-51280650 Msa0075740:three_prime_UTR
ATTTCCTCCTTGAGCATAGA+CGG 0.557646 1_2:-51281790 Msa0075740:CDS
ATTACTCATGGAGGAAGTAC+GGG 0.557772 1_2:-51281439 Msa0075740:CDS
GAATTCTGATCTGAAGAGAT+CGG 0.560341 1_2:+51281721 None:intergenic
CACGCTTCCGTCTATGCTCA+AGG 0.561562 1_2:+51281783 None:intergenic
GAGGGAGTGATGAAGATCAC+TGG 0.564256 1_2:-51280575 Msa0075740:three_prime_UTR
AGACGGAAGCGTGGCTAACG+TGG 0.565434 1_2:-51281773 Msa0075740:CDS
GAAGATCACTGGTTAAGTGC+TGG 0.568707 1_2:-51280564 Msa0075740:three_prime_UTR
CACCTTCAATCTCAAACCCA+TGG 0.573317 1_2:-51282931 Msa0075740:five_prime_UTR
TCTCAACATGCTTCCTAGCA+GGG 0.575418 1_2:+51280831 None:intergenic
TCAAGGGCTCTCCTCACCCT+AGG 0.577561 1_2:-51281406 Msa0075740:intron
ATGTTCTGCTAGAGGTGATG+AGG 0.577879 1_2:-51281683 Msa0075740:CDS
TATAAGTGCAGCAGCATGAG+AGG 0.580000 1_2:-51280857 Msa0075740:CDS
ATCAGAATTCACAGCACAAG+AGG 0.581042 1_2:-51281708 Msa0075740:CDS
TGCTATCAGCAACAAGCTTG+CGG 0.581834 1_2:-51281477 Msa0075740:CDS
CGGAGCTCCAATCAAATGGA+AGG 0.586112 1_2:+51281741 None:intergenic
GAAGCATGTTGAGAGGTGCT+TGG 0.586233 1_2:-51280822 Msa0075740:CDS
GCTTGTTGAGCAAGGTGAAG+CGG 0.587298 1_2:+51282027 None:intergenic
AAGTATGTTGTCTCAACCAA+GGG 0.593996 1_2:-51282367 Msa0075740:CDS
CTCCATGAGTAATCATCAGG+AGG 0.604331 1_2:+51281449 None:intergenic
CTGCAAATGCATGAACTGCA+TGG 0.609869 1_2:-51280733 Msa0075740:exon
GGTCTTCACAAATAGAATGA+CGG 0.611645 1_2:+51280704 None:intergenic
TAAGTATGTTGTCTCAACCA+AGG 0.618261 1_2:-51282368 Msa0075740:CDS
AACAGCAGCTGCAGCAACAA+AGG 0.622186 1_2:-51281954 Msa0075740:CDS
TGTTCTGCTAGAGGTGATGA+GGG 0.623984 1_2:-51281682 Msa0075740:CDS
AAGCTGAAATGATGTTCCGA+AGG 0.624862 1_2:-51281888 Msa0075740:CDS
AAGAGGAAATGTTCTGCTAG+AGG 0.625674 1_2:-51281691 Msa0075740:CDS
TTGATGCAGCTTGTTGAGCA+AGG 0.628338 1_2:+51282019 None:intergenic
TCCATGAGTAATCATCAGGA+GGG 0.631195 1_2:+51281450 None:intergenic
ATCTCAAGCCAATCACATAG+AGG 0.631648 1_2:+51280683 None:intergenic
GGTTGGACATACCTAGGGTG+AGG 0.641458 1_2:+51281395 None:intergenic
TACGGGCAGAAGCCTATCAA+GGG 0.654538 1_2:-51281422 Msa0075740:CDS
CTTGAGCATAGACGGAAGCG+TGG 0.674043 1_2:-51281782 Msa0075740:CDS
AGGCGAGCATAATCACGCCA+AGG 0.679418 1_2:-51280768 Msa0075740:CDS
ACACACACATAAGAATACAA+AGG 0.680874 1_2:+51282997 None:intergenic
CTCCTGATGATTACTCATGG+AGG 0.692245 1_2:-51281448 Msa0075740:CDS
TGGTGATGATGCTGTTGCTG+CGG 0.703851 1_2:+51281976 None:intergenic
CTGCTAGGAAGCATGTTGAG+AGG 0.707257 1_2:-51280829 Msa0075740:CDS
ATGTTCCGAAGGAACACCAG+CGG 0.729358 1_2:-51281877 Msa0075740:CDS
GCTTCCGTCTATGCTCAAGG+AGG 0.768540 1_2:+51281786 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATATCATATTACAA+TGG + chr1_2:51282041-51282060 None:intergenic 10.0%
!!! AAATAAAAATCCTATTTTTG+CGG - chr1_2:51280942-51280961 Msa0075740:intron 15.0%
!!! TGTTTTCAAGTTAAAAAAAA+GGG + chr1_2:51282543-51282562 None:intergenic 15.0%
!!! ATGTTTTCAAGTTAAAAAAA+AGG + chr1_2:51282544-51282563 None:intergenic 15.0%
!!! TTATTTTTTGCTTGTTTCTT+AGG - chr1_2:51280533-51280552 Msa0075740:three_prime_UTR 20.0%
!!! TTTTTTTGTCACATGAAAAT+TGG - chr1_2:51280769-51280788 Msa0075740:CDS 20.0%
!!! TTTTTTGTCACATGAAAATT+GGG - chr1_2:51280770-51280789 Msa0075740:CDS 20.0%
!!! CTTTTTAATGTAATGTTGAA+AGG - chr1_2:51280824-51280843 Msa0075740:CDS 20.0%
!!! TGATGTTTCTTTTACAATTT+GGG + chr1_2:51281406-51281425 None:intergenic 20.0%
!!! ATGATGTTTCTTTTACAATT+TGG + chr1_2:51281407-51281426 None:intergenic 20.0%
!!! GTTAATTTCTGTTACTTTAA+AGG - chr1_2:51282006-51282025 Msa0075740:CDS 20.0%
!! TTAAATCTCAAATAGCAAAA+CGG + chr1_2:51282219-51282238 None:intergenic 20.0%
!!! AATTTTATTGATTCGATTCA+AGG - chr1_2:51282237-51282256 Msa0075740:CDS 20.0%
!! TGTAATGAAAATTACAAACA+TGG + chr1_2:51282487-51282506 None:intergenic 20.0%
!! AGTATGTTATTAAACATTTC+AGG - chr1_2:51283101-51283120 Msa0075740:five_prime_UTR 20.0%
!! GTATGTTATTAAACATTTCA+GGG - chr1_2:51283102-51283121 Msa0075740:five_prime_UTR 20.0%
!! AAATTAATGGAAATTGTCTT+CGG - chr1_2:51283131-51283150 Msa0075740:five_prime_UTR 20.0%
!!! GTACTTTGATGTTTTTTTGT+TGG - chr1_2:51280745-51280764 Msa0075740:CDS 25.0%
! TATTACTTGATTCTGATTCA+TGG - chr1_2:51280850-51280869 Msa0075740:CDS 25.0%
! ATTACTTGATTCTGATTCAT+GGG - chr1_2:51280851-51280870 Msa0075740:CDS 25.0%
! ATCAATGTCTGATATATTTG+TGG - chr1_2:51281027-51281046 Msa0075740:intron 25.0%
!! TGAGATGTTTCTTTGTATTT+TGG - chr1_2:51281055-51281074 Msa0075740:intron 25.0%
!! TTTTATAGATAGAAAGAGAG+AGG - chr1_2:51281139-51281158 Msa0075740:intron 25.0%
!! TTGAGTAAAGTGAACATTTT+TGG + chr1_2:51281441-51281460 None:intergenic 25.0%
!! TCTAATGGTTGATACATTAA+TGG - chr1_2:51281984-51282003 Msa0075740:CDS 25.0%
! AAAATTATTTAAATCCCCAC+AGG + chr1_2:51282407-51282426 None:intergenic 25.0%
!! TGTGGGGATTTAAATAATTT+TGG - chr1_2:51282406-51282425 Msa0075740:CDS 25.0%
!!! AAATAATTTTGGTCTATGTG+TGG - chr1_2:51282417-51282436 Msa0075740:CDS 25.0%
! TGGATATGTAATATGTTGAT+TGG - chr1_2:51282437-51282456 Msa0075740:exon 25.0%
! AAAATTACAAACATGGACAA+AGG + chr1_2:51282480-51282499 None:intergenic 25.0%
! TGACAATAATGTGACAATAA+TGG + chr1_2:51282619-51282638 None:intergenic 25.0%
! CATTATTGTCAATCAAATGA+AGG - chr1_2:51282628-51282647 Msa0075740:intron 25.0%
ACACACACATAAGAATACAA+AGG + chr1_2:51280596-51280615 None:intergenic 30.0%
TTCAGTTCATGAGAAGATAA+AGG + chr1_2:51280903-51280922 None:intergenic 30.0%
TTCATTGTCTGGTGAAAAAT+GGG - chr1_2:51280965-51280984 Msa0075740:intron 30.0%
AGGAATTTAACTGTTGAAAC+TGG - chr1_2:51281260-51281279 Msa0075740:intron 30.0%
! AAGAGAAAGTGGATTTCTTA+GGG + chr1_2:51281504-51281523 None:intergenic 30.0%
TTGAACTCAATTCCAAAGAA+GGG + chr1_2:51281532-51281551 None:intergenic 30.0%
TTTGAACTCAATTCCAAAGA+AGG + chr1_2:51281533-51281552 None:intergenic 30.0%
!! TCTTTGGAATTGAGTTCAAA+CGG - chr1_2:51281533-51281552 Msa0075740:intron 30.0%
!! CATAAGCCTTAATTTTGACA+AGG - chr1_2:51281736-51281755 Msa0075740:CDS 30.0%
!! TAGTAGCCTTGTCAAAATTA+AGG + chr1_2:51281745-51281764 None:intergenic 30.0%
CAAAGAAGAGGTAATTCTAA+TGG - chr1_2:51281969-51281988 Msa0075740:CDS 30.0%
TAGAGTGAAGAGATCAATTA+AGG - chr1_2:51282086-51282105 Msa0075740:CDS 30.0%
!! AACTATTTTGTTATGCTGCT+TGG - chr1_2:51282312-51282331 Msa0075740:CDS 30.0%
GAGCATCAAAATTGCAAAAT+CGG + chr1_2:51282577-51282596 None:intergenic 30.0%
!! TTTTGCAATTTTGATGCTCT+AGG - chr1_2:51282578-51282597 Msa0075740:intron 30.0%
!! TGTCTTGATTTTGTTTCTTC+AGG - chr1_2:51282704-51282723 Msa0075740:intron 30.0%
!! GTCTTGATTTTGTTTCTTCA+GGG - chr1_2:51282705-51282724 Msa0075740:intron 30.0%
!! TCTTGATTTTGTTTCTTCAG+GGG - chr1_2:51282706-51282725 Msa0075740:intron 30.0%
TTCAGGGTTCTCTAAATTAA+TGG - chr1_2:51283118-51283137 Msa0075740:five_prime_UTR 30.0%
GTATTCTTATGTGTGTGTGA+TGG - chr1_2:51280598-51280617 Msa0075740:three_prime_UTR 35.0%
AACAACAGCAACAAGATTCT+AGG - chr1_2:51280689-51280708 Msa0075740:three_prime_UTR 35.0%
ACAACAGCAACAAGATTCTA+GGG - chr1_2:51280690-51280709 Msa0075740:three_prime_UTR 35.0%
TGACAACAACAACTTCATCA+AGG - chr1_2:51280715-51280734 Msa0075740:three_prime_UTR 35.0%
AGACAATGAACCGCAAAAAT+AGG + chr1_2:51280955-51280974 None:intergenic 35.0%
!! TATTTTTGCGGTTCATTGTC+TGG - chr1_2:51280954-51280973 Msa0075740:intron 35.0%
GTTCATTGTCTGGTGAAAAA+TGG - chr1_2:51280964-51280983 Msa0075740:intron 35.0%
!! CTTCTTTTGATTCAGGAACT+TGG - chr1_2:51281084-51281103 Msa0075740:intron 35.0%
TAGAAAGAGAGAGGCTAAAA+TGG - chr1_2:51281148-51281167 Msa0075740:intron 35.0%
TAAGTATGTTGTCTCAACCA+AGG - chr1_2:51281222-51281241 Msa0075740:intron 35.0%
AAGTATGTTGTCTCAACCAA+GGG - chr1_2:51281223-51281242 Msa0075740:intron 35.0%
AAAGTTGTGTCTTTGCTTCA+TGG - chr1_2:51281305-51281324 Msa0075740:intron 35.0%
GTTTGGATCATTCAAGAGTT+AGG - chr1_2:51281327-51281346 Msa0075740:intron 35.0%
AGAAAGCAGTTTGAGGATAA+GGG + chr1_2:51281376-51281395 None:intergenic 35.0%
AAGAAAGCAGTTTGAGGATA+AGG + chr1_2:51281377-51281396 None:intergenic 35.0%
TTGTCTAAGAAAGCAGTTTG+AGG + chr1_2:51281383-51281402 None:intergenic 35.0%
!!! AGTGAACATTTTTGGTGTGA+TGG + chr1_2:51281433-51281452 None:intergenic 35.0%
!! CTGAACTGAATTTTGAGGAT+AGG + chr1_2:51281468-51281487 None:intergenic 35.0%
CTATCCTCAAAATTCAGTTC+AGG - chr1_2:51281466-51281485 Msa0075740:CDS 35.0%
! AGTTCCTGAACTGAATTTTG+AGG + chr1_2:51281473-51281492 None:intergenic 35.0%
CAAAATTCAGTTCAGGAACT+TGG - chr1_2:51281473-51281492 Msa0075740:CDS 35.0%
! CAAGAGAAAGTGGATTTCTT+AGG + chr1_2:51281505-51281524 None:intergenic 35.0%
CTAAGAAATCCACTTTCTCT+TGG - chr1_2:51281503-51281522 Msa0075740:CDS 35.0%
!! CTTTGGAATTGAGTTCAAAC+GGG - chr1_2:51281534-51281553 Msa0075740:intron 35.0%
GAATTCTGATCTGAAGAGAT+CGG + chr1_2:51281872-51281891 None:intergenic 35.0%
AATGTCATTGCTCAAAGAAG+AGG - chr1_2:51281957-51281976 Msa0075740:CDS 35.0%
TAACTTTGTGTGTTCTTGAC+AGG - chr1_2:51282058-51282077 Msa0075740:CDS 35.0%
ATCTCAAATAGCAAAACGGT+TGG + chr1_2:51282215-51282234 None:intergenic 35.0%
AAAAAGGGCTATCGAACATA+TGG + chr1_2:51282528-51282547 None:intergenic 35.0%
!! CTTGATTTTGTTTCTTCAGG+GGG - chr1_2:51282707-51282726 Msa0075740:intron 35.0%
TAGGTAACCATTAGCATAGT+AGG + chr1_2:51282799-51282818 None:intergenic 35.0%
ATGCTAATGGTTACCTATGA+AGG - chr1_2:51282802-51282821 Msa0075740:intron 35.0%
GTCTTCACAAATAGAATGAC+GGG + chr1_2:51282888-51282907 None:intergenic 35.0%
GGTCTTCACAAATAGAATGA+CGG + chr1_2:51282889-51282908 None:intergenic 35.0%
! AGTGCTGGAGTATGTAAAAT+TGG - chr1_2:51283041-51283060 Msa0075740:five_prime_UTR 35.0%
! TTCCATGGGTTTGAGATTGA+AGG + chr1_2:51280664-51280683 None:intergenic 40.0%
GCTGTTGTTGATGTTTCCAT+GGG + chr1_2:51280678-51280697 None:intergenic 40.0%
TGCTGTTGTTGATGTTTCCA+TGG + chr1_2:51280679-51280698 None:intergenic 40.0%
!! GTGTGTGCTTCTTTTGATTC+AGG - chr1_2:51281077-51281096 Msa0075740:intron 40.0%
CTATGATGAACTTGATCCCT+TGG + chr1_2:51281242-51281261 None:intergenic 40.0%
CAAGGGATCAAGTTCATCAT+AGG - chr1_2:51281240-51281259 Msa0075740:intron 40.0%
AAACTGGTGAAGCTGTGAAT+AGG - chr1_2:51281276-51281295 Msa0075740:intron 40.0%
TGTGTCTTTGCTTCATGGTT+TGG - chr1_2:51281310-51281329 Msa0075740:intron 40.0%
TTCTCTTGGAAACCCTTCTT+TGG - chr1_2:51281517-51281536 Msa0075740:intron 40.0%
AAGCTGAAATGATGTTCCGA+AGG - chr1_2:51281702-51281721 Msa0075740:CDS 40.0%
AAAATTAAGGCTTATGCCGC+TGG + chr1_2:51281732-51281751 None:intergenic 40.0%
ATTTCCTCCTTGAGCATAGA+CGG - chr1_2:51281800-51281819 Msa0075740:CDS 40.0%
GGAAGTTCCTTCCATTTGAT+TGG - chr1_2:51281842-51281861 Msa0075740:CDS 40.0%
ATCAGAATTCACAGCACAAG+AGG - chr1_2:51281882-51281901 Msa0075740:CDS 40.0%
AAGAGGAAATGTTCTGCTAG+AGG - chr1_2:51281899-51281918 Msa0075740:CDS 40.0%
TCCATGAGTAATCATCAGGA+GGG + chr1_2:51282143-51282162 None:intergenic 40.0%
TTCCTCCATGAGTAATCATC+AGG + chr1_2:51282147-51282166 None:intergenic 40.0%
GATTACTCATGGAGGAAGTA+CGG - chr1_2:51282150-51282169 Msa0075740:CDS 40.0%
! ATTACTCATGGAGGAAGTAC+GGG - chr1_2:51282151-51282170 Msa0075740:CDS 40.0%
AAAACGGTTGGACATACCTA+GGG + chr1_2:51282203-51282222 None:intergenic 40.0%
! TGATTGATGTACTAGCCTGT+GGG - chr1_2:51282389-51282408 Msa0075740:CDS 40.0%
TGTGAAGACCTCTATGTGAT+TGG - chr1_2:51282899-51282918 Msa0075740:five_prime_UTR 40.0%
ATCTCAAGCCAATCACATAG+AGG + chr1_2:51282910-51282929 None:intergenic 40.0%
! ATATTTCAAGTGATGCGAGC+AGG - chr1_2:51282940-51282959 Msa0075740:five_prime_UTR 40.0%
! GACTGCAGATTTTGCCTTTT+GGG - chr1_2:51282962-51282981 Msa0075740:five_prime_UTR 40.0%
!! TTTTGGGTAGTAGCTTGGTT+GGG - chr1_2:51282978-51282997 Msa0075740:five_prime_UTR 40.0%
TTGGGGAGTCGTTTATTTAG+AGG - chr1_2:51282996-51283015 Msa0075740:five_prime_UTR 40.0%
TGGGGAGTCGTTTATTTAGA+GGG - chr1_2:51282997-51283016 Msa0075740:five_prime_UTR 40.0%
GAGAGAGAGGGAGGAAAAAA+AGG + chr1_2:51280468-51280487 None:intergenic 45.0%
AAGGTGTGAAGAGAGGACTT+TGG + chr1_2:51280645-51280664 None:intergenic 45.0%
! GAGATTGAAGGTGTGAAGAG+AGG + chr1_2:51280652-51280671 None:intergenic 45.0%
CACCTTCAATCTCAAACCCA+TGG - chr1_2:51280659-51280678 Msa0075740:three_prime_UTR 45.0%
GAAGGGTTTCCAAGAGAAAG+TGG + chr1_2:51281515-51281534 None:intergenic 45.0%
!! TTGATGCAGCTTGTTGAGCA+AGG + chr1_2:51281574-51281593 None:intergenic 45.0%
CACCAACAATGTCGTCTACT+AGG - chr1_2:51281771-51281790 Msa0075740:CDS 45.0%
GACCTAGTAGACGACATTGT+TGG + chr1_2:51281776-51281795 None:intergenic 45.0%
AGATCGGAGCTCCAATCAAA+TGG + chr1_2:51281856-51281875 None:intergenic 45.0%
ATGTTCTGCTAGAGGTGATG+AGG - chr1_2:51281907-51281926 Msa0075740:CDS 45.0%
TGTTCTGCTAGAGGTGATGA+GGG - chr1_2:51281908-51281927 Msa0075740:CDS 45.0%
TGCTATCAGCAACAAGCTTG+CGG - chr1_2:51282113-51282132 Msa0075740:CDS 45.0%
TCCCTCCTGATGATTACTCA+TGG - chr1_2:51282139-51282158 Msa0075740:CDS 45.0%
CTCCATGAGTAATCATCAGG+AGG + chr1_2:51282144-51282163 None:intergenic 45.0%
CTCCTGATGATTACTCATGG+AGG - chr1_2:51282142-51282161 Msa0075740:CDS 45.0%
CAAAACGGTTGGACATACCT+AGG + chr1_2:51282204-51282223 None:intergenic 45.0%
! CTGATTGATGTACTAGCCTG+TGG - chr1_2:51282388-51282407 Msa0075740:CDS 45.0%
! GATTGATGTACTAGCCTGTG+GGG - chr1_2:51282390-51282409 Msa0075740:CDS 45.0%
TATAAGTGCAGCAGCATGAG+AGG - chr1_2:51282733-51282752 Msa0075740:intron 45.0%
TCTCAACATGCTTCCTAGCA+GGG + chr1_2:51282762-51282781 None:intergenic 45.0%
GGATGAGCCTACTATGCTAA+TGG - chr1_2:51282789-51282808 Msa0075740:intron 45.0%
GTGATTATGCTCGCCTTCAT+AGG + chr1_2:51282818-51282837 None:intergenic 45.0%
CATGCATTTGCAGGTTGTGT+TGG + chr1_2:51282850-51282869 None:intergenic 45.0%
CATGCAGTTCATGCATTTGC+AGG + chr1_2:51282859-51282878 None:intergenic 45.0%
CTGCAAATGCATGAACTGCA+TGG - chr1_2:51282857-51282876 Msa0075740:intron 45.0%
! GGACTGCAGATTTTGCCTTT+TGG - chr1_2:51282961-51282980 Msa0075740:five_prime_UTR 45.0%
!! TTGCCTTTTGGGTAGTAGCT+TGG - chr1_2:51282973-51282992 Msa0075740:five_prime_UTR 45.0%
CAACCAAGCTACTACCCAAA+AGG + chr1_2:51282979-51282998 None:intergenic 45.0%
!! CTTTTGGGTAGTAGCTTGGT+TGG - chr1_2:51282977-51282996 Msa0075740:five_prime_UTR 45.0%
TTTGGGTAGTAGCTTGGTTG+GGG - chr1_2:51282979-51282998 Msa0075740:five_prime_UTR 45.0%
! GAAGATCACTGGTTAAGTGC+TGG - chr1_2:51283026-51283045 Msa0075740:five_prime_UTR 45.0%
!!! ATTTTTATTTTTTTTATCTT+TGG - chr1_2:51280800-51280819 Msa0075740:CDS 5.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_2:51280480-51280499 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_2:51280479-51280498 None:intergenic 50.0%
! GCTTGTTGAGCAAGGTGAAG+CGG + chr1_2:51281566-51281585 None:intergenic 50.0%
! TGGTGATGATGCTGTTGCTG+CGG + chr1_2:51281617-51281636 None:intergenic 50.0%
TTTGTTGCTGCAGCTGCTGT+TGG + chr1_2:51281637-51281656 None:intergenic 50.0%
AACAGCAGCTGCAGCAACAA+AGG - chr1_2:51281636-51281655 Msa0075740:CDS 50.0%
ATGTTCCGAAGGAACACCAG+CGG - chr1_2:51281713-51281732 Msa0075740:CDS 50.0%
TTATGCCGCTGGTGTTCCTT+CGG + chr1_2:51281721-51281740 None:intergenic 50.0%
CGGAGCTCCAATCAAATGGA+AGG + chr1_2:51281852-51281871 None:intergenic 50.0%
!! GCAAGCTTGTTGCTGATAGC+AGG + chr1_2:51282114-51282133 None:intergenic 50.0%
TACGGGCAGAAGCCTATCAA+GGG - chr1_2:51282168-51282187 Msa0075740:CDS 50.0%
CTCTCAACATGCTTCCTAGC+AGG + chr1_2:51282763-51282782 None:intergenic 50.0%
! CTGCTAGGAAGCATGTTGAG+AGG - chr1_2:51282761-51282780 Msa0075740:intron 50.0%
!! GAAGCATGTTGAGAGGTGCT+TGG - chr1_2:51282768-51282787 Msa0075740:intron 50.0%
! TGCAGGTTGTGTTGGTACCT+TGG + chr1_2:51282842-51282861 None:intergenic 50.0%
GAGGGAGTGATGAAGATCAC+TGG - chr1_2:51283015-51283034 Msa0075740:five_prime_UTR 50.0%
AGAGAGAGAGAGAGAGAGGG+AGG + chr1_2:51280477-51280496 None:intergenic 55.0%
GCTTCCGTCTATGCTCAAGG+AGG + chr1_2:51281807-51281826 None:intergenic 55.0%
CACGCTTCCGTCTATGCTCA+AGG + chr1_2:51281810-51281829 None:intergenic 55.0%
CTTGAGCATAGACGGAAGCG+TGG - chr1_2:51281808-51281827 Msa0075740:CDS 55.0%
GTACGGGCAGAAGCCTATCA+AGG - chr1_2:51282167-51282186 Msa0075740:CDS 55.0%
GGTTGGACATACCTAGGGTG+AGG + chr1_2:51282198-51282217 None:intergenic 55.0%
AGGCGAGCATAATCACGCCA+AGG - chr1_2:51282822-51282841 Msa0075740:intron 55.0%
! AGACGGAAGCGTGGCTAACG+TGG - chr1_2:51281817-51281836 Msa0075740:CDS 60.0%
! GGAAGCGTGGCTAACGTGGA+TGG - chr1_2:51281821-51281840 Msa0075740:CDS 60.0%
GGGTGAGGAGAGCCCTTGAT+AGG + chr1_2:51282183-51282202 None:intergenic 60.0%
TCAAGGGCTCTCCTCACCCT+AGG - chr1_2:51282184-51282203 Msa0075740:CDS 60.0%
GCATGAGAGGCTGCCCTGCT+AGG - chr1_2:51282746-51282765 Msa0075740:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51280455 51283157 51280455 ID=Msa0075740;Name=Msa0075740
chr1_2 mRNA 51280455 51283157 51280455 ID=Msa0075740-mRNA-1;Parent=Msa0075740;Name=Msa0075740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=302|1|1|1|0.66|0.5|4|287|360
chr1_2 exon 51280455 51280886 51280455 ID=Msa0075740-mRNA-1:exon:15774;Parent=Msa0075740-mRNA-1
chr1_2 exon 51281407 51281532 51281407 ID=Msa0075740-mRNA-1:exon:15773;Parent=Msa0075740-mRNA-1
chr1_2 exon 51281634 51282465 51281634 ID=Msa0075740-mRNA-1:exon:15772;Parent=Msa0075740-mRNA-1
chr1_2 exon 51282876 51283157 51282876 ID=Msa0075740-mRNA-1:exon:15771;Parent=Msa0075740-mRNA-1
chr1_2 five_prime_UTR 51282876 51283157 51282876 ID=Msa0075740-mRNA-1:five_prime_utr;Parent=Msa0075740-mRNA-1
chr1_2 five_prime_UTR 51282446 51282465 51282446 ID=Msa0075740-mRNA-1:five_prime_utr;Parent=Msa0075740-mRNA-1
chr1_2 CDS 51281634 51282445 51281634 ID=Msa0075740-mRNA-1:cds;Parent=Msa0075740-mRNA-1
chr1_2 CDS 51281407 51281532 51281407 ID=Msa0075740-mRNA-1:cds;Parent=Msa0075740-mRNA-1
chr1_2 CDS 51280742 51280886 51280742 ID=Msa0075740-mRNA-1:cds;Parent=Msa0075740-mRNA-1
chr1_2 three_prime_UTR 51280455 51280741 51280455 ID=Msa0075740-mRNA-1:three_prime_utr;Parent=Msa0075740-mRNA-1
Gene Sequence

>Msa0075740

ATGGAAGAAGTTGAACAAGCAAGCAGAACAGCTGTTGAAAGCTGTCATAGAGTTCTAAGTATGTTGTCTCAACCAAGGGATCAAGTTCATCATAGGAATTTAACTGTTGAAACTGGTGAAGCTGTGAATAGGTTCAAGAAAGTTGTGTCTTTGCTTCATGGTTTGGATCATTCAAGAGTTAGGAAGCTTAAAAATCTTCAAAATGTCCCTTATCCTCAAACTGCTTTCTTAGACAACCCAAATTGTAAAAGAAACATCATCAACCATCACACCAAAAATGTTCACTTTACTCAAACTACCTATCCTCAAAATTCAGTTCAGGAACTTGGTTCAACCCTAAGAAATCCACTTTCTCTTGGAAACCCTTCTTTGGAATTGAGTTCAAACGGGAAAAGTCCGCTTCACCTTGCTCAACAAGCTGCATCAAATCACTATCAGTTCTATCAGCCGCAGCAACAGCATCATCACCAACAGCAGCTGCAGCAACAAAGGTTGTTGTTGCAGCAGCAGCAACAGCAGCAACAAATGAAGCATCAAGCTGAAATGATGTTCCGAAGGAACACCAGCGGCATAAGCCTTAATTTTGACAAGGCTACTAGCAGCACACCAACAATGTCGTCTACTAGGTCTTTCATTTCCTCCTTGAGCATAGACGGAAGCGTGGCTAACGTGGATGGAAGTTCCTTCCATTTGATTGGAGCTCCGATCTCTTCAGATCAGAATTCACAGCACAAGAGGAAATGTTCTGCTAGAGGTGATGAGGGAAGCTTGAAATGTAGTAGCAGTTCTAAATGTCATTGCTCAAAGAAGAGGAAGCATAGAGTGAAGAGATCAATTAAGGTGCCTGCTATCAGCAACAAGCTTGCGGATATCCCTCCTGATGATTACTCATGGAGGAAGTACGGGCAGAAGCCTATCAAGGGCTCTCCTCACCCTAGGGGGTATTATAAGTGCAGCAGCATGAGAGGCTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGATGAGCCTACTATGCTAATGGTTACCTATGAAGGCGAGCATAATCACGCCAAGGTACCAACACAACCTGCAAATGCATGA
Protein sequence

>Msa0075740

MEEVEQASRTAVESCHRVLSMLSQPRDQVHHRNLTVETGEAVNRFKKVVSLLHGLDHSRVRKLKNLQNVPYPQTAFLDNPNCKRNIINHHTKNVHFTQTTYPQNSVQELGSTLRNPLSLGNPSLELSSNGKSPLHLAQQAASNHYQFYQPQQQHHHQQQLQQQRLLLQQQQQQQQMKHQAEMMFRRNTSGISLNFDKATSSTPTMSSTRSFISSLSIDGSVANVDGSSFHLIGAPISSDQNSQHKRKCSARGDEGSLKCSSSSKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLDEPTMLMVTYEGEHNHAKVPTQPANA*