AlfalfaGEDB | Msa0334500

M. sativa cultivar zhongmu-4 / Msa0334500

KEGG: K05391
GO: GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662
PFAM: PF00520.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334500	XP_003596492.3	81.287	684	41	7	1	599	1	682	0.0	1089

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334500	sp\|Q94AS9\|CNGC4_ARATH	71.154	520	118	3	108	597	175	692	0.0	756

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0334500	0.822060	2.899551e-53	-8.615850e-47
Msa0110970	Msa0334500	0.812574	3.959521e-51	-8.615850e-47
Msa0112750	Msa0334500	0.804900	1.729858e-49	-8.615850e-47
Msa0130570	Msa0334500	0.820483	6.699484e-53	-8.615850e-47
Msa0141100	Msa0334500	0.810175	1.313532e-50	-8.615850e-47
Msa0157290	Msa0334500	0.821007	5.075830e-53	-8.615850e-47
Msa0191040	Msa0334500	0.817032	4.069548e-52	-8.615850e-47
Msa0197930	Msa0334500	0.814764	1.304701e-51	-8.615850e-47
Msa0200260	Msa0334500	0.800304	1.534582e-48	-8.615850e-47
Msa0216930	Msa0334500	0.831162	1.951951e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334500	MtrunA17_Chr2g0318561	93.333	495	4	1	134	599	2	496	0.0	937
Msa0334500	MtrunA17_Chr8g0360821	70.750	547	120	6	89	597	127	671	0.0	794
Msa0334500	MtrunA17_Chr7g0218341	47.961	515	222	7	112	593	206	707	8.85e-158	469
Msa0334500	MtrunA17_Chr4g0028861	37.131	474	252	10	110	549	215	676	8.45e-91	294
Msa0334500	MtrunA17_Chr2g0326871	35.271	499	272	11	119	582	177	659	1.41e-89	291
Msa0334500	MtrunA17_Chr3g0139071	36.211	475	258	10	122	561	181	645	4.65e-85	280
Msa0334500	MtrunA17_Chr2g0305771	35.600	500	258	13	122	578	151	629	4.59e-84	276
Msa0334500	MtrunA17_Chr3g0125651	35.043	468	261	10	122	553	139	599	3.79e-82	271
Msa0334500	MtrunA17_Chr1g0181121	34.664	476	265	9	110	551	135	598	2.09e-80	267
Msa0334500	MtrunA17_Chr3g0126541	35.118	467	248	11	122	550	185	634	5.38e-80	266

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334500	AT5G54250.3	71.845	515	118	3	108	597	175	687	0.0	758
Msa0334500	AT5G54250.2	71.154	520	118	3	108	597	175	692	0.0	756
Msa0334500	AT5G54250.1	71.154	520	118	3	108	597	175	692	0.0	756
Msa0334500	AT5G54250.4	71.154	520	118	3	108	597	175	692	0.0	756
Msa0334500	AT5G15410.2	46.245	506	233	8	122	592	220	721	6.84e-141	426
Msa0334500	AT5G15410.1	46.245	506	233	8	122	592	221	722	9.40e-141	426
Msa0334500	AT2G28260.2	37.155	471	246	10	119	553	128	584	5.35e-93	299
Msa0334500	AT2G28260.1	37.155	471	246	10	119	553	168	624	1.02e-92	300
Msa0334500	AT5G57940.1	37.107	477	244	12	119	553	189	651	1.29e-86	285
Msa0334500	AT5G57940.2	37.107	477	244	12	119	553	189	651	1.29e-86	285

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Find 123 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAGTGATGTTGAT+CGG	0.495921	2_4:-52845094	None:intergenic
AAACATAAACGCTCCTCTTT+TGG	0.273915	2_4:+52845543	Msa0334500:CDS
AAACTTGAGTGATGTTGATC+GGG	0.429397	2_4:-52845093	None:intergenic
AAAGAAGTGGACCTTGACAA+AGG	0.645468	2_4:-52850220	None:intergenic
AAAGGTTCTGTTGGCTTTGA+AGG	0.335928	2_4:-52845601	None:intergenic
AAATCATCTTGATTTGGCTT+TGG	0.367402	2_4:-52850286	None:intergenic
AACAAAAGACGGTTGCCACA+AGG	0.610620	2_4:+52849274	Msa0334500:CDS
AACACTATTATATTAACTAG+TGG	0.571292	2_4:+52848813	Msa0334500:CDS
AACAGGCAGCAGGGTCATGT+TGG	0.591008	2_4:+52847635	Msa0334500:intron
AACTTGAGTGATGTTGATCG+GGG	0.611958	2_4:-52845092	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTGAGTGATGTTGAT+CGG	-	chr2_4:52845097-52845116	None:intergenic	30.0%
GTTAAAGAAAAAGGTTCTGT+TGG	-	chr2_4:52845613-52845632	None:intergenic	30.0%
TTCAACACATTCTCTTTGAT+TGG	-	chr2_4:52845964-52845983	None:intergenic	30.0%
ATGTCTCGTATAAAAAGGAT+TGG	+	chr2_4:52846055-52846074	Msa0334500:intron	30.0%
AAGGGATATTTATGGTCAAT+GGG	-	chr2_4:52846606-52846625	None:intergenic	30.0%
TAAGGGATATTTATGGTCAA+TGG	-	chr2_4:52846607-52846626	None:intergenic	30.0%
ATTATGCAACATGACAAAGT+AGG	-	chr2_4:52846702-52846721	None:intergenic	30.0%
CAAAAATGAAACCATTTGTG+AGG	-	chr2_4:52847362-52847381	None:intergenic	30.0%
TACACTATATATGGTGAAAC+AGG	+	chr2_4:52847618-52847637	Msa0334500:intron	30.0%
TGCAAAGAACCAATATACTA+TGG	+	chr2_4:52847742-52847761	Msa0334500:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	52845087	52850376	52845087	ID=Msa0334500;Name=Msa0334500
chr2_4	mRNA	52845087	52850376	52845087	ID=Msa0334500-mRNA-1;Parent=Msa0334500;Name=Msa0334500-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.71\|0.75\|1\|1\|1\|8\|55\|599
chr2_4	exon	52845087	52845359	52845087	ID=Msa0334500-mRNA-1:exon:15992;Parent=Msa0334500-mRNA-1
chr2_4	exon	52845531	52845659	52845531	ID=Msa0334500-mRNA-1:exon:15993;Parent=Msa0334500-mRNA-1
chr2_4	exon	52847225	52847437	52847225	ID=Msa0334500-mRNA-1:exon:15994;Parent=Msa0334500-mRNA-1
chr2_4	exon	52847640	52847959	52847640	ID=Msa0334500-mRNA-1:exon:15995;Parent=Msa0334500-mRNA-1
chr2_4	exon	52848764	52848872	52848764	ID=Msa0334500-mRNA-1:exon:15996;Parent=Msa0334500-mRNA-1
chr2_4	exon	52849202	52849438	52849202	ID=Msa0334500-mRNA-1:exon:15997;Parent=Msa0334500-mRNA-1
chr2_4	exon	52849680	52849945	52849680	ID=Msa0334500-mRNA-1:exon:15998;Parent=Msa0334500-mRNA-1
chr2_4	exon	52850069	52850376	52850069	ID=Msa0334500-mRNA-1:exon:15999;Parent=Msa0334500-mRNA-1
chr2_4	CDS	52845087	52845359	52845087	ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1
chr2_4	CDS	52845531	52845659	52845531	ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1
chr2_4	CDS	52847225	52847437	52847225	ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1
chr2_4	CDS	52847640	52847959	52847640	ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1
chr2_4	CDS	52848764	52848872	52848764	ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1
chr2_4	CDS	52849202	52849438	52849202	ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1
chr2_4	CDS	52849680	52849945	52849680	ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1
chr2_4	CDS	52850069	52850321	52850069	ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1
chr2_4	three_prime_UTR	52850322	52850376	52850322	ID=Msa0334500-mRNA-1:three_prime_utr;Parent=Msa0334500-mRNA-1

Gene Sequence

>Msa0334500

ATGGCCCCCGATCAACATCACTCAAGTTTTAATTCAAACATGCAACCCTACTACTACTACAACACCGCTGACGATGACTTCGACGATATCGTCAACAACGAGGTTGTTAACGATAGCGACGAGTACGACGAGGATGAGTATCAGTATCAGTATCAGCACGAAGAAGATGAAAAAGAAGAAACTAAACAGCCACAAAAACGTTGTTCATCTTCTTTTTCATTGAGTAGGGTATTACTTGATCCAAGAGGAAAATGGGCTGAAGAATGGAACAGATTTTATATTCATAAACATAAACGCTCCTCTTTTGGCTTCATTCATCATGGAACGAGTTCTTCTTCTAACTCCTTCAAAGCCAACAGAACCTTTTTCTTTAACATCTTCATCATCCTCCCTCTGCCTCAGATTGTGCTATGGGTGACAATTCCATCTTTGTTAGAGCAAGGATCAATTGCGTGGGTGATTACTGTATTGTTGATTATGTTCCTGTTTCAATACCTTCCTAAAATTTATCACTCAGTCTGCTTCGTGCGTCGAAACCTCACAAATGGTTTCATTTTTGGAACCGTTTGGTGGGGATTCGCTATCAATATGATCGCTTATTTTGTTGCTTCCCATGCAGCAGGGTCATGTTGGTATTTGTTGGGACTTCAAAGGGCAGCAAAGTGTCTAGAAGAGCAATGTGAGACAACACGTGGTTGTGGACTAAGAACACTGTGTTGCAAAGAACCAATATACTATGGAAACTATAACATGTTGAAGAAATTAGACAGAACAAGGTTGGTTTGGTCACAGAATTCAGAAGCAAGGTCTACATGTTTAGCTAGTGCTGATAACTATGAATTTGGAGTTTATGAATGGAGTGTTCAACTTGTTACAAATAATAGCCGAATTGAAAAGATACTCCTTCCTATCTTTTGGGGCCTAATGACTCTCAGCACTTTTGGGAACCTCCAGAGTACAACAGAAAGGATGGAAGTCGTTTTCAACACTATTATATTAACTAGTGGCCTCCTTCTAGTCACTATGCTAATTGGAAACATCAAGGTATTTTTACATGCTACAACATCAAAGAAGCAAGCAATGAAATTGAAGATGACAAACATGGAGTGGTGGATGAACAAAAGACGGTTGCCACAAGGACTTCGCCAGCGTGTGCGTAACTACGAGAGACAGTGTTGGGCTGCCATGCGCGGCGTTGATGAATGTCAGTTGATAAAAAATCTCCCGGAGGGTTTGAGAAGGGATATCAAGTACCATCTTTGTTTGGGTTTGGTGAGACAGTTAACAAGAGAAGGAGACCCAGTTCGTAGAATGCTATTTGTGGTAAGGGGTCACCTTCAAAGTAGCCAATTCCTAAGAGATGGAGTTAAAAGTTGTTGTATGTTAGGACCAGGAAACTTCAGTGGAGATGAGCTTCTATCATGGTGTTTAAGAAGGCCATTTATAGAACGTCTTCCAACATCATCATCGACTTTGGTGACACTTACAACCGTCGAAGTTTTTGGACTTGAAGCGGAGGATGTCAAATATGTGACGCAAAACTTTAGGTACACATTTGCAAAAGAAAATGTTAGAAGAAGTGTTAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTGTGGCAATTCAATTGGCTTGGAGAAGGTATAGGCATAGGTTGACTTTGAGTTCTTTGTCCTTTATTCGGCCTCGTAGGCCTTTGTCAAGGTCCACTTCTTTGGAAGAGGATAGACTTCGTCTCTATACAGCTTTGCTAACCTCACCAAAGCCAAATCAAGATGATTTTGACTCGTCATAA

Protein sequence

>Msa0334500

MAPDQHHSSFNSNMQPYYYYNTADDDFDDIVNNEVVNDSDEYDEDEYQYQYQHEEDEKEETKQPQKRCSSSFSLSRVLLDPRGKWAEEWNRFYIHKHKRSSFGFIHHGTSSSSNSFKANRTFFFNIFIILPLPQIVLWVTIPSLLEQGSIAWVITVLLIMFLFQYLPKIYHSVCFVRRNLTNGFIFGTVWWGFAINMIAYFVASHAAGSCWYLLGLQRAAKCLEEQCETTRGCGLRTLCCKEPIYYGNYNMLKKLDRTRLVWSQNSEARSTCLASADNYEFGVYEWSVQLVTNNSRIEKILLPIFWGLMTLSTFGNLQSTTERMEVVFNTIILTSGLLLVTMLIGNIKVFLHATTSKKQAMKLKMTNMEWWMNKRRLPQGLRQRVRNYERQCWAAMRGVDECQLIKNLPEGLRRDIKYHLCLGLVRQLTREGDPVRRMLFVVRGHLQSSQFLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPTSSSTLVTLTTVEVFGLEAEDVKYVTQNFRYTFAKENVRRSVRYYSPGWRTWAAVAIQLAWRRYRHRLTLSSLSFIRPRRPLSRSTSLEEDRLRLYTALLTSPKPNQDDFDSS*