Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334500 | XP_003596492.3 | 81.287 | 684 | 41 | 7 | 1 | 599 | 1 | 682 | 0.0 | 1089 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334500 | sp|Q94AS9|CNGC4_ARATH | 71.154 | 520 | 118 | 3 | 108 | 597 | 175 | 692 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0334500 | 0.822060 | 2.899551e-53 | -8.615850e-47 |
| Msa0110970 | Msa0334500 | 0.812574 | 3.959521e-51 | -8.615850e-47 |
| Msa0112750 | Msa0334500 | 0.804900 | 1.729858e-49 | -8.615850e-47 |
| Msa0130570 | Msa0334500 | 0.820483 | 6.699484e-53 | -8.615850e-47 |
| Msa0141100 | Msa0334500 | 0.810175 | 1.313532e-50 | -8.615850e-47 |
| Msa0157290 | Msa0334500 | 0.821007 | 5.075830e-53 | -8.615850e-47 |
| Msa0191040 | Msa0334500 | 0.817032 | 4.069548e-52 | -8.615850e-47 |
| Msa0197930 | Msa0334500 | 0.814764 | 1.304701e-51 | -8.615850e-47 |
| Msa0200260 | Msa0334500 | 0.800304 | 1.534582e-48 | -8.615850e-47 |
| Msa0216930 | Msa0334500 | 0.831162 | 1.951951e-55 | -8.615850e-47 |
| Msa0219190 | Msa0334500 | 0.834856 | 2.353087e-56 | -8.615850e-47 |
| Msa0233340 | Msa0334500 | 0.816776 | 4.644963e-52 | -8.615850e-47 |
| Msa0243100 | Msa0334500 | 0.810587 | 1.070254e-50 | -8.615850e-47 |
| Msa0251240 | Msa0334500 | 0.815819 | 7.605584e-52 | -8.615850e-47 |
| Msa0298240 | Msa0334500 | 0.816843 | 4.487751e-52 | -8.615850e-47 |
| Msa0311690 | Msa0334500 | 0.818624 | 1.778799e-52 | -8.615850e-47 |
| Msa0334500 | Msa0360540 | 0.800797 | 1.217440e-48 | -8.615850e-47 |
| Msa0334500 | Msa0374850 | 0.811916 | 5.511753e-51 | -8.615850e-47 |
| Msa0334500 | Msa0375090 | 0.812441 | 4.232357e-51 | -8.615850e-47 |
| Msa0334500 | Msa0423100 | 0.802152 | 6.425575e-49 | -8.615850e-47 |
| Msa0334500 | Msa0484780 | 0.825206 | 5.317976e-54 | -8.615850e-47 |
| Msa0334500 | Msa0503580 | 0.806514 | 7.928004e-50 | -8.615850e-47 |
| Msa0334500 | Msa0520510 | 0.826752 | 2.282800e-54 | -8.615850e-47 |
| Msa0334500 | Msa0531430 | 0.838738 | 2.405236e-57 | -8.615850e-47 |
| Msa0334500 | Msa0534570 | 0.800185 | 1.622672e-48 | -8.615850e-47 |
| Msa0334500 | Msa0534590 | 0.864042 | 1.615810e-64 | -8.615850e-47 |
| Msa0334500 | Msa0590800 | 0.836182 | 1.086865e-56 | -8.615850e-47 |
| Msa0334500 | Msa0611380 | 0.832421 | 9.543777e-56 | -8.615850e-47 |
| Msa0334500 | Msa0631120 | 0.863110 | 3.144856e-64 | -8.615850e-47 |
| Msa0334500 | Msa0657970 | 0.809083 | 2.254748e-50 | -8.615850e-47 |
| Msa0334500 | Msa0666030 | 0.843311 | 1.515059e-58 | -8.615850e-47 |
| Msa0334500 | Msa0669340 | 0.842521 | 2.458253e-58 | -8.615850e-47 |
| Msa0334500 | Msa0716450 | 0.815762 | 7.830307e-52 | -8.615850e-47 |
| Msa0334500 | Msa0717260 | 0.824077 | 9.812012e-54 | -8.615850e-47 |
| Msa0334500 | Msa0741900 | 0.807900 | 4.032950e-50 | -8.615850e-47 |
| Msa0334500 | Msa0758320 | 0.803019 | 4.257123e-49 | -8.615850e-47 |
| Msa0334500 | Msa0837980 | 0.800762 | 1.237623e-48 | -8.615850e-47 |
| Msa0334500 | Msa0853320 | 0.801312 | 9.556777e-49 | -8.615850e-47 |
| Msa0334500 | Msa0858840 | 0.813097 | 3.041797e-51 | -8.615850e-47 |
| Msa0334500 | Msa0880140 | 0.822337 | 2.500705e-53 | -8.615850e-47 |
| Msa0334500 | Msa0909120 | 0.809481 | 1.852680e-50 | -8.615850e-47 |
| Msa0334500 | Msa0922410 | 0.806428 | 8.266026e-50 | -8.615850e-47 |
| Msa0334500 | Msa0935710 | 0.806199 | 9.236966e-50 | -8.615850e-47 |
| Msa0334500 | Msa0936410 | 0.800458 | 1.427766e-48 | -8.615850e-47 |
| Msa0334500 | Msa0973250 | 0.820410 | 6.959991e-53 | -8.615850e-47 |
| Msa0334500 | Msa1010110 | 0.803274 | 3.770265e-49 | -8.615850e-47 |
| Msa0334500 | Msa1033560 | 0.829536 | 4.872330e-55 | -8.615850e-47 |
| Msa0334500 | Msa1073340 | 0.844148 | 9.044594e-59 | -8.615850e-47 |
| Msa0334500 | Msa1082500 | 0.801956 | 7.050784e-49 | -8.615850e-47 |
| Msa0334500 | Msa1113850 | 0.819563 | 1.087829e-52 | -8.615850e-47 |
| Msa0334500 | Msa1160280 | 0.804863 | 1.761237e-49 | -8.615850e-47 |
| Msa0334500 | Msa1160400 | 0.838683 | 2.486387e-57 | -8.615850e-47 |
| Msa0334500 | Msa1203000 | 0.824356 | 8.437086e-54 | -8.615850e-47 |
| Msa0334500 | Msa1218480 | 0.807317 | 5.362231e-50 | -8.615850e-47 |
| Msa0334500 | Msa1219260 | 0.815964 | 7.059189e-52 | -8.615850e-47 |
| Msa0334500 | Msa1228190 | 0.801449 | 8.957870e-49 | -8.615850e-47 |
| Msa0334500 | Msa1254700 | 0.800208 | 1.605602e-48 | -8.615850e-47 |
| Msa0334500 | Msa1255280 | 0.807583 | 4.707866e-50 | -8.615850e-47 |
| Msa0334500 | Msa1266960 | 0.815073 | 1.114045e-51 | -8.615850e-47 |
| Msa0334500 | Msa1271260 | 0.809366 | 1.960353e-50 | -8.615850e-47 |
| Msa0334500 | Msa1283860 | 0.801923 | 7.161944e-49 | -8.615850e-47 |
| Msa0334500 | Msa1289280 | 0.812818 | 3.500726e-51 | -8.615850e-47 |
| Msa0334500 | Msa1345420 | 0.811471 | 6.885029e-51 | -8.615850e-47 |
| Msa0334500 | Msa1397250 | 0.802091 | 6.613341e-49 | -8.615850e-47 |
| Msa0334500 | Msa1399560 | 0.814173 | 1.763232e-51 | -8.615850e-47 |
| Msa0334500 | Msa1420060 | 0.821975 | 3.033100e-53 | -8.615850e-47 |
| Msa0334500 | Msa1421550 | 0.803954 | 2.723656e-49 | -8.615850e-47 |
| Msa0334500 | Msa1438250 | 0.813023 | 3.157532e-51 | -8.615850e-47 |
| Msa0334500 | Msa1443840 | 0.807363 | 5.243362e-50 | -8.615850e-47 |
| Msa0334500 | Msa1452120 | 0.814214 | 1.726388e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334500 | MtrunA17_Chr2g0318561 | 93.333 | 495 | 4 | 1 | 134 | 599 | 2 | 496 | 0.0 | 937 |
| Msa0334500 | MtrunA17_Chr8g0360821 | 70.750 | 547 | 120 | 6 | 89 | 597 | 127 | 671 | 0.0 | 794 |
| Msa0334500 | MtrunA17_Chr7g0218341 | 47.961 | 515 | 222 | 7 | 112 | 593 | 206 | 707 | 8.85e-158 | 469 |
| Msa0334500 | MtrunA17_Chr4g0028861 | 37.131 | 474 | 252 | 10 | 110 | 549 | 215 | 676 | 8.45e-91 | 294 |
| Msa0334500 | MtrunA17_Chr2g0326871 | 35.271 | 499 | 272 | 11 | 119 | 582 | 177 | 659 | 1.41e-89 | 291 |
| Msa0334500 | MtrunA17_Chr3g0139071 | 36.211 | 475 | 258 | 10 | 122 | 561 | 181 | 645 | 4.65e-85 | 280 |
| Msa0334500 | MtrunA17_Chr2g0305771 | 35.600 | 500 | 258 | 13 | 122 | 578 | 151 | 629 | 4.59e-84 | 276 |
| Msa0334500 | MtrunA17_Chr3g0125651 | 35.043 | 468 | 261 | 10 | 122 | 553 | 139 | 599 | 3.79e-82 | 271 |
| Msa0334500 | MtrunA17_Chr1g0181121 | 34.664 | 476 | 265 | 9 | 110 | 551 | 135 | 598 | 2.09e-80 | 267 |
| Msa0334500 | MtrunA17_Chr3g0126541 | 35.118 | 467 | 248 | 11 | 122 | 550 | 185 | 634 | 5.38e-80 | 266 |
| Msa0334500 | MtrunA17_Chr4g0073941 | 35.095 | 473 | 248 | 13 | 120 | 550 | 201 | 656 | 8.16e-80 | 266 |
| Msa0334500 | MtrunA17_Chr1g0158861 | 32.596 | 497 | 267 | 11 | 122 | 580 | 187 | 653 | 2.25e-79 | 265 |
| Msa0334500 | MtrunA17_Chr4g0001481 | 33.191 | 470 | 266 | 10 | 119 | 550 | 202 | 661 | 2.91e-76 | 257 |
| Msa0334500 | MtrunA17_Chr7g0228181 | 34.172 | 477 | 267 | 12 | 122 | 560 | 147 | 614 | 2.98e-75 | 253 |
| Msa0334500 | MtrunA17_Chr7g0275581 | 33.686 | 472 | 252 | 9 | 122 | 550 | 187 | 640 | 1.92e-74 | 251 |
| Msa0334500 | MtrunA17_Chr6g0480851 | 32.454 | 493 | 276 | 9 | 104 | 555 | 272 | 748 | 2.72e-69 | 238 |
| Msa0334500 | MtrunA17_Chr6g0481021 | 33.891 | 478 | 266 | 9 | 122 | 558 | 227 | 695 | 7.32e-69 | 236 |
| Msa0334500 | MtrunA17_Chr6g0480781 | 28.600 | 493 | 295 | 8 | 104 | 555 | 257 | 733 | 2.54e-68 | 236 |
| Msa0334500 | MtrunA17_Chr8g0347121 | 30.966 | 507 | 258 | 12 | 122 | 553 | 164 | 653 | 1.87e-67 | 233 |
| Msa0334500 | MtrunA17_Chr6g0480671 | 34.375 | 480 | 260 | 13 | 122 | 560 | 297 | 762 | 3.55e-59 | 211 |
| Msa0334500 | MtrunA17_Chr6g0480741 | 27.992 | 493 | 290 | 13 | 104 | 552 | 203 | 674 | 1.24e-49 | 183 |
| Msa0334500 | MtrunA17_Chr6g0480681 | 28.507 | 442 | 251 | 12 | 156 | 554 | 281 | 700 | 1.24e-43 | 166 |
| Msa0334500 | MtrunA17_Chr2g0318551 | 48.077 | 208 | 45 | 5 | 17 | 163 | 3 | 208 | 1.00e-34 | 130 |
| Msa0334500 | MtrunA17_Chr5g0395421 | 30.812 | 357 | 187 | 8 | 216 | 531 | 18 | 355 | 2.69e-32 | 128 |
| Msa0334500 | MtrunA17_Chr6g0480771 | 31.048 | 248 | 124 | 6 | 344 | 551 | 12 | 252 | 2.66e-25 | 106 |
| Msa0334500 | MtrunA17_Chr2g0326861 | 30.357 | 168 | 105 | 4 | 119 | 285 | 40 | 196 | 3.96e-20 | 89.7 |
| Msa0334500 | MtrunA17_Chr6g0480841 | 32.323 | 198 | 90 | 5 | 398 | 555 | 2 | 195 | 9.77e-19 | 85.5 |
| Msa0334500 | MtrunA17_Chr5g0395411 | 31.579 | 114 | 76 | 1 | 104 | 217 | 247 | 358 | 5.29e-16 | 80.1 |
| Msa0334500 | MtrunA17_Chr2g0326851 | 38.462 | 91 | 52 | 2 | 492 | 582 | 3 | 89 | 8.32e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334500 | AT5G54250.3 | 71.845 | 515 | 118 | 3 | 108 | 597 | 175 | 687 | 0.0 | 758 |
| Msa0334500 | AT5G54250.2 | 71.154 | 520 | 118 | 3 | 108 | 597 | 175 | 692 | 0.0 | 756 |
| Msa0334500 | AT5G54250.1 | 71.154 | 520 | 118 | 3 | 108 | 597 | 175 | 692 | 0.0 | 756 |
| Msa0334500 | AT5G54250.4 | 71.154 | 520 | 118 | 3 | 108 | 597 | 175 | 692 | 0.0 | 756 |
| Msa0334500 | AT5G15410.2 | 46.245 | 506 | 233 | 8 | 122 | 592 | 220 | 721 | 6.84e-141 | 426 |
| Msa0334500 | AT5G15410.1 | 46.245 | 506 | 233 | 8 | 122 | 592 | 221 | 722 | 9.40e-141 | 426 |
| Msa0334500 | AT2G28260.2 | 37.155 | 471 | 246 | 10 | 119 | 553 | 128 | 584 | 5.35e-93 | 299 |
| Msa0334500 | AT2G28260.1 | 37.155 | 471 | 246 | 10 | 119 | 553 | 168 | 624 | 1.02e-92 | 300 |
| Msa0334500 | AT5G57940.1 | 37.107 | 477 | 244 | 12 | 119 | 553 | 189 | 651 | 1.29e-86 | 285 |
| Msa0334500 | AT5G57940.2 | 37.107 | 477 | 244 | 12 | 119 | 553 | 189 | 651 | 1.29e-86 | 285 |
| Msa0334500 | AT5G57940.3 | 37.107 | 477 | 244 | 12 | 119 | 553 | 182 | 644 | 2.00e-86 | 284 |
| Msa0334500 | AT2G24610.1 | 35.158 | 475 | 263 | 11 | 122 | 561 | 178 | 642 | 4.74e-83 | 275 |
| Msa0334500 | AT2G24610.2 | 35.158 | 475 | 263 | 11 | 122 | 561 | 193 | 657 | 1.95e-82 | 274 |
| Msa0334500 | AT1G01340.2 | 34.211 | 494 | 265 | 10 | 122 | 580 | 172 | 640 | 8.43e-82 | 271 |
| Msa0334500 | AT1G01340.1 | 34.211 | 494 | 265 | 10 | 122 | 580 | 167 | 635 | 8.99e-82 | 271 |
| Msa0334500 | AT4G30360.1 | 35.062 | 482 | 255 | 11 | 122 | 562 | 179 | 643 | 1.34e-81 | 271 |
| Msa0334500 | AT2G23980.6 | 35.220 | 477 | 260 | 10 | 122 | 559 | 180 | 646 | 4.20e-81 | 270 |
| Msa0334500 | AT2G23980.9 | 35.220 | 477 | 260 | 10 | 122 | 559 | 207 | 673 | 6.05e-81 | 270 |
| Msa0334500 | AT2G23980.10 | 35.220 | 477 | 260 | 10 | 122 | 559 | 207 | 673 | 6.05e-81 | 270 |
| Msa0334500 | AT2G23980.1 | 35.220 | 477 | 260 | 10 | 122 | 559 | 207 | 673 | 6.05e-81 | 270 |
| Msa0334500 | AT2G23980.4 | 35.220 | 477 | 260 | 10 | 122 | 559 | 207 | 673 | 6.05e-81 | 270 |
| Msa0334500 | AT2G23980.5 | 35.220 | 477 | 260 | 10 | 122 | 559 | 207 | 673 | 6.05e-81 | 270 |
| Msa0334500 | AT5G53130.1 | 35.181 | 469 | 244 | 10 | 122 | 550 | 188 | 636 | 2.04e-80 | 268 |
| Msa0334500 | AT4G30560.5 | 35.565 | 478 | 256 | 12 | 122 | 559 | 181 | 646 | 4.26e-80 | 267 |
| Msa0334500 | AT4G30560.2 | 35.565 | 478 | 256 | 12 | 122 | 559 | 181 | 646 | 4.26e-80 | 267 |
| Msa0334500 | AT4G30560.3 | 35.565 | 478 | 256 | 12 | 122 | 559 | 181 | 646 | 4.26e-80 | 267 |
| Msa0334500 | AT4G30560.1 | 35.565 | 478 | 256 | 12 | 122 | 559 | 207 | 672 | 8.67e-80 | 266 |
| Msa0334500 | AT4G30560.4 | 35.565 | 478 | 256 | 12 | 122 | 559 | 207 | 672 | 8.67e-80 | 266 |
| Msa0334500 | AT1G19780.1 | 34.672 | 473 | 262 | 11 | 119 | 553 | 198 | 661 | 1.45e-79 | 266 |
| Msa0334500 | AT1G15990.1 | 34.927 | 481 | 250 | 12 | 119 | 553 | 192 | 655 | 1.47e-79 | 266 |
| Msa0334500 | AT4G01010.1 | 33.468 | 496 | 267 | 12 | 122 | 580 | 172 | 641 | 6.79e-79 | 263 |
| Msa0334500 | AT4G01010.2 | 33.468 | 496 | 267 | 12 | 122 | 580 | 172 | 641 | 6.79e-79 | 263 |
| Msa0334500 | AT5G14870.1 | 34.310 | 478 | 266 | 12 | 122 | 561 | 143 | 610 | 3.16e-78 | 262 |
| Msa0334500 | AT3G48010.1 | 33.902 | 469 | 267 | 8 | 122 | 553 | 148 | 610 | 3.84e-77 | 259 |
| Msa0334500 | AT1G19780.2 | 35.402 | 435 | 237 | 9 | 156 | 553 | 23 | 450 | 1.07e-76 | 253 |
| Msa0334500 | AT2G23980.3 | 33.600 | 500 | 260 | 11 | 122 | 559 | 207 | 696 | 5.56e-76 | 257 |
| Msa0334500 | AT2G23980.2 | 33.600 | 500 | 260 | 11 | 122 | 559 | 207 | 696 | 5.56e-76 | 257 |
| Msa0334500 | AT2G23980.8 | 33.600 | 500 | 260 | 11 | 122 | 559 | 207 | 696 | 5.56e-76 | 257 |
| Msa0334500 | AT2G23980.7 | 33.600 | 500 | 260 | 11 | 122 | 559 | 207 | 696 | 5.56e-76 | 257 |
| Msa0334500 | AT2G46430.1 | 33.198 | 494 | 266 | 13 | 122 | 579 | 176 | 641 | 3.09e-73 | 248 |
| Msa0334500 | AT2G46430.2 | 33.198 | 494 | 266 | 13 | 122 | 579 | 176 | 641 | 3.09e-73 | 248 |
| Msa0334500 | AT3G17700.1 | 35.054 | 465 | 248 | 11 | 122 | 547 | 296 | 745 | 2.74e-70 | 241 |
| Msa0334500 | AT3G17690.1 | 33.262 | 469 | 261 | 12 | 122 | 553 | 262 | 715 | 8.32e-70 | 239 |
| Msa0334500 | AT2G46450.2 | 30.753 | 478 | 257 | 15 | 122 | 553 | 110 | 559 | 1.62e-60 | 212 |
| Msa0334500 | AT2G46450.3 | 30.753 | 478 | 257 | 15 | 122 | 553 | 97 | 546 | 1.78e-60 | 212 |
| Msa0334500 | AT2G46450.4 | 30.753 | 478 | 257 | 15 | 122 | 553 | 133 | 582 | 2.20e-60 | 213 |
| Msa0334500 | AT2G46450.1 | 30.753 | 478 | 257 | 15 | 122 | 553 | 133 | 582 | 2.20e-60 | 213 |
| Msa0334500 | AT3G17700.2 | 35.401 | 387 | 206 | 9 | 122 | 479 | 296 | 667 | 1.70e-58 | 208 |
| Msa0334500 | AT3G17690.2 | 32.727 | 385 | 216 | 9 | 122 | 477 | 262 | 632 | 4.29e-57 | 203 |
| Msa0334500 | AT2G46440.1 | 30.219 | 503 | 270 | 17 | 122 | 579 | 133 | 599 | 2.13e-53 | 192 |
| Msa0334500 | AT2G46440.2 | 30.505 | 436 | 235 | 13 | 186 | 579 | 12 | 421 | 1.19e-47 | 173 |
| Msa0334500 | AT3G17690.3 | 32.075 | 265 | 169 | 5 | 122 | 385 | 262 | 516 | 3.30e-37 | 145 |
Find 123 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGATGTTGTCAGCACTTT+TGG | 0.210717 | 2_4:+52848750 | Msa0334500:intron |
| AGATACTCCTTCCTATCTTT+TGG | 0.215218 | 2_4:+52847920 | Msa0334500:CDS |
| CTTCTAGTCACTATGCTAAT+TGG | 0.241612 | 2_4:+52848840 | Msa0334500:CDS |
| TTTGTCAAGGTCCACTTCTT+TGG | 0.250073 | 2_4:+52850222 | Msa0334500:CDS |
| AAACATAAACGCTCCTCTTT+TGG | 0.273915 | 2_4:+52845543 | Msa0334500:CDS |
| TATCAAGTACCATCTTTGTT+TGG | 0.281982 | 2_4:+52849402 | Msa0334500:CDS |
| AGTGCTGATAACTATGAATT+TGG | 0.287072 | 2_4:+52847847 | Msa0334500:CDS |
| TGAGTTCTTTGTCCTTTATT+CGG | 0.292219 | 2_4:+52850188 | Msa0334500:CDS |
| GTTAAAAGTTGTTGTATGTT+AGG | 0.299721 | 2_4:+52849764 | Msa0334500:CDS |
| GATGAAGATGTTAAAGAAAA+AGG | 0.306071 | 2_4:-52845619 | None:intergenic |
| GTTGGAAGACGTTCTATAAA+TGG | 0.317969 | 2_4:-52849836 | None:intergenic |
| GGCTGCTGTGGCAATTCAAT+TGG | 0.324383 | 2_4:+52850135 | Msa0334500:CDS |
| ATCAAGTACCATCTTTGTTT+GGG | 0.333486 | 2_4:+52849403 | Msa0334500:CDS |
| AAAGGTTCTGTTGGCTTTGA+AGG | 0.335928 | 2_4:-52845601 | None:intergenic |
| AATATGTGACGCAAAACTTT+AGG | 0.336774 | 2_4:+52849924 | Msa0334500:CDS |
| TAACTCCATCTCTTAGGAAT+TGG | 0.337128 | 2_4:-52849745 | None:intergenic |
| ACTCACCTGGTTGGAGAACT+TGG | 0.342981 | 2_4:+52850113 | Msa0334500:CDS |
| AGGGTCATGTTGGTATTTGT+TGG | 0.347194 | 2_4:+52847645 | Msa0334500:CDS |
| TTATAGTTTCCATAGTATAT+TGG | 0.355926 | 2_4:-52847751 | None:intergenic |
| GTACCATCTTTGTTTGGGTT+TGG | 0.357835 | 2_4:+52849408 | Msa0334500:CDS |
| GAGTCAAAATCATCTTGATT+TGG | 0.363054 | 2_4:-52850292 | None:intergenic |
| AAATCATCTTGATTTGGCTT+TGG | 0.367402 | 2_4:-52850286 | None:intergenic |
| TAGACAGAACAAGGTTGGTT+TGG | 0.386399 | 2_4:+52847788 | Msa0334500:CDS |
| TCATCTCCACTGAAGTTTCC+TGG | 0.390660 | 2_4:-52849788 | None:intergenic |
| ATGAATTTGGAGTTTATGAA+TGG | 0.394019 | 2_4:+52847860 | Msa0334500:CDS |
| GGGTCATGTTGGTATTTGTT+GGG | 0.397628 | 2_4:+52847646 | Msa0334500:CDS |
| ACAAATAGCATTCTACGAAC+TGG | 0.398087 | 2_4:-52849698 | None:intergenic |
| AATTGGCTTGGAGAAGGTAT+AGG | 0.400107 | 2_4:+52850152 | Msa0334500:CDS |
| CAATTAGCATAGTGACTAGA+AGG | 0.401970 | 2_4:-52848839 | None:intergenic |
| TACTTGATCCAAGAGGAAAA+TGG | 0.403260 | 2_4:+52845319 | Msa0334500:CDS |
| TTAGGAATTGGCTACTTTGA+AGG | 0.405487 | 2_4:-52849733 | None:intergenic |
| TGCAAAGAACCAATATACTA+TGG | 0.411249 | 2_4:+52847742 | Msa0334500:CDS |
| AAACTTGAGTGATGTTGATC+GGG | 0.429397 | 2_4:-52845093 | None:intergenic |
| CATCATCCTCCCTCTGCCTC+AGG | 0.430828 | 2_4:+52845638 | Msa0334500:CDS |
| AGGCCTACGAGGCCGAATAA+AGG | 0.432529 | 2_4:-52850200 | None:intergenic |
| TCGTCATAACATCGTGTTTG+TGG | 0.439262 | 2_4:+52850313 | Msa0334500:exon |
| TCCAACATCATCATCGACTT+TGG | 0.439571 | 2_4:+52849853 | Msa0334500:CDS |
| TTGTTTGGGTTTGGTGAGAC+AGG | 0.441635 | 2_4:+52849417 | Msa0334500:CDS |
| CCATCCTTTCTGTTGTACTC+TGG | 0.448749 | 2_4:-52848779 | None:intergenic |
| ACTTGATCCAAGAGGAAAAT+GGG | 0.451152 | 2_4:+52845320 | Msa0334500:CDS |
| GTCATTAGGCCCCAAAAGAT+AGG | 0.457093 | 2_4:-52847931 | None:intergenic |
| GTAGAATGCTATTTGTGGTA+AGG | 0.461877 | 2_4:+52849705 | Msa0334500:CDS |
| TTTGGGGCCTAATGACTCTC+AGG | 0.466761 | 2_4:+52847938 | Msa0334500:CDS |
| TTCTATCATGGTGTTTAAGA+AGG | 0.475341 | 2_4:+52849813 | Msa0334500:CDS |
| AGCGGTGTTGTAGTAGTAGT+AGG | 0.477245 | 2_4:-52845133 | None:intergenic |
| GAAATTAGACAGAACAAGGT+TGG | 0.478036 | 2_4:+52847783 | Msa0334500:CDS |
| CTGTGGCAATTCAATTGGCT+TGG | 0.478572 | 2_4:+52850140 | Msa0334500:CDS |
| GAGGAAAATGGGCTGAAGAA+TGG | 0.486947 | 2_4:+52845331 | Msa0334500:CDS |
| GTGCGTCGAAACCTCACAAA+TGG | 0.493386 | 2_4:+52847348 | Msa0334500:CDS |
| TCCTTTCTGTTGTACTCTGG+AGG | 0.494095 | 2_4:-52848776 | None:intergenic |
| TAGAATGCTATTTGTGGTAA+GGG | 0.494337 | 2_4:+52849706 | Msa0334500:CDS |
| AGTTCGTAGAATGCTATTTG+TGG | 0.494344 | 2_4:+52849700 | Msa0334500:CDS |
| AAAACTTGAGTGATGTTGAT+CGG | 0.495921 | 2_4:-52845094 | None:intergenic |
| AAGGTCCACTTCTTTGGAAG+AGG | 0.502180 | 2_4:+52850228 | Msa0334500:CDS |
| ATATCCCTTCTCAAACCCTC+CGG | 0.502776 | 2_4:-52849382 | None:intergenic |
| GATCCTTGCTCTAACAAAGA+TGG | 0.503367 | 2_4:-52847246 | None:intergenic |
| TCTATCCTCTTCCAAAGAAG+TGG | 0.518250 | 2_4:-52850233 | None:intergenic |
| GGTATTTGTTGGGACTTCAA+AGG | 0.518699 | 2_4:+52847656 | Msa0334500:CDS |
| AATATAATCACCTGAGGCAG+AGG | 0.520724 | 2_4:-52845648 | None:intergenic |
| TATATGGTGAAACAGGCAGC+AGG | 0.526412 | 2_4:+52847625 | Msa0334500:intron |
| TTGGAGAACTTGGGCTGCTG+TGG | 0.530447 | 2_4:+52850123 | Msa0334500:CDS |
| TAACTACGAGAGACAGTGTT+GGG | 0.530575 | 2_4:+52849315 | Msa0334500:CDS |
| CAATTCAATTGGCTTGGAGA+AGG | 0.530721 | 2_4:+52850146 | Msa0334500:CDS |
| TGTCCTTTATTCGGCCTCGT+AGG | 0.536746 | 2_4:+52850197 | Msa0334500:CDS |
| CAAATAGCATTCTACGAACT+GGG | 0.537490 | 2_4:-52849697 | None:intergenic |
| ATTCCATCTTTGTTAGAGCA+AGG | 0.537624 | 2_4:+52847243 | Msa0334500:CDS |
| AGTAGCCAATTCCTAAGAGA+TGG | 0.538975 | 2_4:+52849740 | Msa0334500:CDS |
| GAAAATACCTGAGAGTCATT+AGG | 0.541685 | 2_4:-52847945 | None:intergenic |
| GTATTTGTTGGGACTTCAAA+GGG | 0.546964 | 2_4:+52847657 | Msa0334500:CDS |
| CAGTGTTGGGCTGCCATGCG+CGG | 0.554243 | 2_4:+52849328 | Msa0334500:CDS |
| CTTGGAGAAGGTATAGGCAT+AGG | 0.554858 | 2_4:+52850158 | Msa0334500:CDS |
| ATGATGAATGAAGCCAAAAG+AGG | 0.559467 | 2_4:-52845556 | None:intergenic |
| TTAGATATTACTCACCTGGT+TGG | 0.563077 | 2_4:+52850104 | Msa0334500:CDS |
| CCAGAGTACAACAGAAAGGA+TGG | 0.563680 | 2_4:+52848779 | Msa0334500:CDS |
| ATCTTGATTTGGCTTTGGTG+AGG | 0.566095 | 2_4:-52850281 | None:intergenic |
| TCACCAAACCCAAACAAAGA+TGG | 0.566389 | 2_4:-52849411 | None:intergenic |
| CTCACCTGGTTGGAGAACTT+GGG | 0.567396 | 2_4:+52850114 | Msa0334500:CDS |
| TGCATACAGTTAACAAGAGA+AGG | 0.570005 | 2_4:+52849671 | Msa0334500:intron |
| AGTTGTTGTATGTTAGGACC+AGG | 0.570970 | 2_4:+52849770 | Msa0334500:CDS |
| AACACTATTATATTAACTAG+TGG | 0.571292 | 2_4:+52848813 | Msa0334500:CDS |
| TGTGAGACAACACGTGGTTG+TGG | 0.574726 | 2_4:+52847703 | Msa0334500:CDS |
| GTGGAGATGAGCTTCTATCA+TGG | 0.575590 | 2_4:+52849801 | Msa0334500:CDS |
| ACATTCATCAACGCCGCGCA+TGG | 0.577989 | 2_4:-52849341 | None:intergenic |
| TATGCTAATTGGAAACATCA+AGG | 0.582197 | 2_4:+52848851 | Msa0334500:CDS |
| ATCTCCCGGAGGGTTTGAGA+AGG | 0.585770 | 2_4:+52849377 | Msa0334500:CDS |
| TATCCCTTCTCAAACCCTCC+GGG | 0.586412 | 2_4:-52849381 | None:intergenic |
| AGTGTTAGATATTACTCACC+TGG | 0.588815 | 2_4:+52850100 | Msa0334500:CDS |
| AACAGGCAGCAGGGTCATGT+TGG | 0.591008 | 2_4:+52847635 | Msa0334500:intron |
| GCGGTGTTGTAGTAGTAGTA+GGG | 0.593787 | 2_4:-52845132 | None:intergenic |
| GGCCTCGTAGGCCTTTGTCA+AGG | 0.602074 | 2_4:+52850209 | Msa0334500:CDS |
| TGAAGAAATTAGACAGAACA+AGG | 0.603321 | 2_4:+52847779 | Msa0334500:CDS |
| AACAAAAGACGGTTGCCACA+AGG | 0.610620 | 2_4:+52849274 | Msa0334500:CDS |
| TTAGGCCCCAAAAGATAGGA+AGG | 0.610853 | 2_4:-52847927 | None:intergenic |
| TAGAGCAAGGATCAATTGCG+TGG | 0.611551 | 2_4:+52847256 | Msa0334500:CDS |
| AACTTGAGTGATGTTGATCG+GGG | 0.611958 | 2_4:-52845092 | None:intergenic |
| GGTCACAGAATTCAGAAGCA+AGG | 0.613640 | 2_4:+52847809 | Msa0334500:CDS |
| ACCAAAGTCGATGATGATGT+TGG | 0.615822 | 2_4:-52849854 | None:intergenic |
| GATAGCGAATCCCCACCAAA+CGG | 0.616213 | 2_4:-52847385 | None:intergenic |
| TCTCCCGGAGGGTTTGAGAA+GGG | 0.616232 | 2_4:+52849378 | Msa0334500:CDS |
| GCAGCCCAAGTTCTCCAACC+AGG | 0.629666 | 2_4:-52850118 | None:intergenic |
| ACCTCCAGAGTACAACAGAA+AGG | 0.635309 | 2_4:+52848775 | Msa0334500:CDS |
| ATATAATCACCTGAGGCAGA+GGG | 0.636064 | 2_4:-52845647 | None:intergenic |
| AGAATGCTATTTGTGGTAAG+GGG | 0.637257 | 2_4:+52849707 | Msa0334500:CDS |
| ACACGCTGGCGAAGTCCTTG+TGG | 0.639696 | 2_4:-52849289 | None:intergenic |
| AAAGAAGTGGACCTTGACAA+AGG | 0.645468 | 2_4:-52850220 | None:intergenic |
| AGAGCAAGGATCAATTGCGT+GGG | 0.651778 | 2_4:+52847257 | Msa0334500:CDS |
| TTAGGACCAGGAAACTTCAG+TGG | 0.652388 | 2_4:+52849782 | Msa0334500:CDS |
| GAAATTGAAGATGACAAACA+TGG | 0.653767 | 2_4:+52849240 | Msa0334500:CDS |
| TGAAGATGACAAACATGGAG+TGG | 0.674136 | 2_4:+52849245 | Msa0334500:CDS |
| TCTCGTAGTTACGCACACGC+TGG | 0.675194 | 2_4:-52849303 | None:intergenic |
| ATCGTCGAAGTCATCGTCAG+CGG | 0.678589 | 2_4:-52845151 | None:intergenic |
| TAATCACCTGAGGCAGAGGG+AGG | 0.678795 | 2_4:-52845644 | None:intergenic |
| ATATGGTGAAACAGGCAGCA+GGG | 0.685470 | 2_4:+52847626 | Msa0334500:intron |
| AGATGACAAACATGGAGTGG+TGG | 0.685912 | 2_4:+52849248 | Msa0334500:CDS |
| GTAACTACGAGAGACAGTGT+TGG | 0.686561 | 2_4:+52849314 | Msa0334500:CDS |
| GACCTTGACAAAGGCCTACG+AGG | 0.688299 | 2_4:-52850211 | None:intergenic |
| CGACGATATCGTCAACAACG+AGG | 0.696721 | 2_4:+52845167 | Msa0334500:CDS |
| TTAGCATAGTGACTAGAAGG+AGG | 0.697558 | 2_4:-52848836 | None:intergenic |
| CGATAGCGACGAGTACGACG+AGG | 0.704602 | 2_4:+52845197 | Msa0334500:CDS |
| AGGGTATTACTTGATCCAAG+AGG | 0.706932 | 2_4:+52845312 | Msa0334500:CDS |
| AGTGGTGGATGAACAAAAGA+CGG | 0.713345 | 2_4:+52849263 | Msa0334500:CDS |
| ACTTGAGTGATGTTGATCGG+GGG | 0.715749 | 2_4:-52845091 | None:intergenic |
| GAGCAATGTGAGACAACACG+TGG | 0.748139 | 2_4:+52847697 | Msa0334500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAAAAAAAATTAA+GGG | - | chr2_4:52846624-52846643 | None:intergenic | 0.0% |
| !! | AAATGTATTAAGATTTAATT+TGG | + | chr2_4:52846526-52846545 | Msa0334500:intron | 10.0% |
| !! | ATAAAACAAATAAAATATGT+TGG | - | chr2_4:52846658-52846677 | None:intergenic | 10.0% |
| !!! | TGAAATTTTTAAAATGTATT+TGG | + | chr2_4:52847173-52847192 | Msa0334500:intron | 10.0% |
| !!! | ACAATGTAAATAATTTTTAA+CGG | + | chr2_4:52847469-52847488 | Msa0334500:intron | 10.0% |
| !!! | AAATAAGTATTTTAATTGAA+GGG | - | chr2_4:52848359-52848378 | None:intergenic | 10.0% |
| !! | TTCAATTAAAATACTTATTT+GGG | + | chr2_4:52848359-52848378 | Msa0334500:intron | 10.0% |
| !!! | TTTTTCTTAAAAAAATTGAA+GGG | - | chr2_4:52849006-52849025 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTAAAAAAATTGA+AGG | - | chr2_4:52849007-52849026 | None:intergenic | 10.0% |
| !!! | TATTTTATTTTTTACAAAAG+AGG | + | chr2_4:52849455-52849474 | Msa0334500:intron | 10.0% |
| !!! | ATTTTATTTTTTACAAAAGA+GGG | + | chr2_4:52849456-52849475 | Msa0334500:intron | 10.0% |
| !! | TTATTACATTGTAATATCAT+TGG | + | chr2_4:52845724-52845743 | Msa0334500:intron | 15.0% |
| !!! | TAAGCAAAAATCAAATTTTT+AGG | - | chr2_4:52846310-52846329 | None:intergenic | 15.0% |
| !! | AAAAAATTAAGGGATATTTA+TGG | - | chr2_4:52846614-52846633 | None:intergenic | 15.0% |
| !! | TAAATAGACTTATTTGAATT+TGG | - | chr2_4:52848126-52848145 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAACTCGTTTTAT+TGG | + | chr2_4:52848196-52848215 | Msa0334500:intron | 15.0% |
| !!! | CAAATAAGTATTTTAATTGA+AGG | - | chr2_4:52848360-52848379 | None:intergenic | 15.0% |
| !! | CTTCAATTAAAATACTTATT+TGG | + | chr2_4:52848358-52848377 | Msa0334500:intron | 15.0% |
| !! | GAATATCAAAATGTAATAAT+AGG | - | chr2_4:52849162-52849181 | None:intergenic | 15.0% |
| !!! | TTCAACACAATATTTTTGAT+TGG | + | chr2_4:52845866-52845885 | Msa0334500:intron | 20.0% |
| !! | ATGTGTTGAAAAATGTATTT+AGG | + | chr2_4:52845991-52846010 | Msa0334500:intron | 20.0% |
| !!! | TTTTTGCTTATAATAGTGAT+CGG | - | chr2_4:52846211-52846230 | None:intergenic | 20.0% |
| !! | CATTGAGTAAATAATGTATT+TGG | - | chr2_4:52846285-52846304 | None:intergenic | 20.0% |
| !! | CCATTATTAAATACTTCATT+CGG | - | chr2_4:52846342-52846361 | None:intergenic | 20.0% |
| !! | AACAAAATTGAGTATTTGTA+TGG | - | chr2_4:52846999-52847018 | None:intergenic | 20.0% |
| !! | TTATAGTTTCCATAGTATAT+TGG | - | chr2_4:52847754-52847773 | None:intergenic | 20.0% |
| !!! | AACTTCATGATTTTAAATTG+TGG | + | chr2_4:52847981-52848000 | Msa0334500:intron | 20.0% |
| !! | TTGGAATATAACAAATTTAG+AGG | - | chr2_4:52848107-52848126 | None:intergenic | 20.0% |
| !!! | CACAACATATTTTTTTTGAA+TGG | - | chr2_4:52848164-52848183 | None:intergenic | 20.0% |
| !!! | TTAAAATACTTATTTGGGTT+CGG | + | chr2_4:52848364-52848383 | Msa0334500:intron | 20.0% |
| !!! | CAACATCTTTTAAATTTACA+AGG | - | chr2_4:52848391-52848410 | None:intergenic | 20.0% |
| !! | AACACTATTATATTAACTAG+TGG | + | chr2_4:52848813-52848832 | Msa0334500:CDS | 20.0% |
| !! | ATTAATCTTGCTAAACAAAA+TGG | - | chr2_4:52848947-52848966 | None:intergenic | 20.0% |
| !! | TAATTATGTCACACATATTA+TGG | - | chr2_4:52848971-52848990 | None:intergenic | 20.0% |
| !!! | ATGAATCTTGATAATTCATT+TGG | + | chr2_4:52849025-52849044 | Msa0334500:intron | 20.0% |
| !!! | TAATTCATTTGGAGTTTAAT+AGG | + | chr2_4:52849036-52849055 | Msa0334500:intron | 20.0% |
| !!! | AATAATAGGCTACTTATTTT+TGG | - | chr2_4:52849148-52849167 | None:intergenic | 20.0% |
| !!! | CATTTTGATATTCTTTATGT+TGG | + | chr2_4:52849169-52849188 | Msa0334500:intron | 20.0% |
| !! | CTAAATTGCATTATTATTCT+AGG | + | chr2_4:52849609-52849628 | Msa0334500:intron | 20.0% |
| !!! | ATCTTCTTTTTCATTGAGTA+GGG | + | chr2_4:52845293-52845312 | Msa0334500:CDS | 25.0% |
| !! | TGTATGTGTCTTTTTATAGA+TGG | + | chr2_4:52845435-52845454 | Msa0334500:intron | 25.0% |
| ! | GATGAAGATGTTAAAGAAAA+AGG | - | chr2_4:52845622-52845641 | None:intergenic | 25.0% |
| ! | TCTATAAATATAATCACCTG+AGG | - | chr2_4:52845657-52845676 | None:intergenic | 25.0% |
| !! | TGATTGGTTAAAATTCACAT+GGG | - | chr2_4:52845948-52845967 | None:intergenic | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | - | chr2_4:52845949-52845968 | None:intergenic | 25.0% |
| !! | TTTTTATACGAGACATAAGT+AGG | - | chr2_4:52846051-52846070 | None:intergenic | 25.0% |
| ! | TACTTATGTCTCGTATAAAA+AGG | + | chr2_4:52846050-52846069 | Msa0334500:intron | 25.0% |
| !! | CCGAATGAAGTATTTAATAA+TGG | + | chr2_4:52846339-52846358 | Msa0334500:intron | 25.0% |
| ! | TAAGAGAAGTGAAATATTGT+GGG | - | chr2_4:52846378-52846397 | None:intergenic | 25.0% |
| ! | ATAAGAGAAGTGAAATATTG+TGG | - | chr2_4:52846379-52846398 | None:intergenic | 25.0% |
| ! | AATGTACAAATATCACTTCT+AGG | + | chr2_4:52846450-52846469 | Msa0334500:intron | 25.0% |
| !! | ATATAAGATGTGTACGTTTT+TGG | + | chr2_4:52846878-52846897 | Msa0334500:intron | 25.0% |
| ! | GTCATATAGATAAAATTGCA+CGG | - | chr2_4:52847509-52847528 | None:intergenic | 25.0% |
| !! | GTGCAATTTTATCTATATGA+CGG | + | chr2_4:52847508-52847527 | Msa0334500:intron | 25.0% |
| ! | ATGCAAACATACACTATATA+TGG | + | chr2_4:52847609-52847628 | Msa0334500:intron | 25.0% |
| !! | ATGAATTTGGAGTTTATGAA+TGG | + | chr2_4:52847860-52847879 | Msa0334500:CDS | 25.0% |
| ! | TTTACCGTAATATAAAGGTT+TGG | - | chr2_4:52848039-52848058 | None:intergenic | 25.0% |
| !! | CACATTTTACCGTAATATAA+AGG | - | chr2_4:52848044-52848063 | None:intergenic | 25.0% |
| ! | CTTTATATTACGGTAAAATG+TGG | + | chr2_4:52848042-52848061 | Msa0334500:intron | 25.0% |
| ! | CAACAAATCTTCAATTTAAG+AGG | + | chr2_4:52848482-52848501 | Msa0334500:intron | 25.0% |
| !!! | TCATTCTCACAAAAGTTTTT+TGG | + | chr2_4:52848729-52848748 | Msa0334500:intron | 25.0% |
| ! | AAGGTACGTAATAATTAACA+AGG | + | chr2_4:52848870-52848889 | Msa0334500:intron | 25.0% |
| ! | TAATTAACAAGGACTTACTA+AGG | + | chr2_4:52848881-52848900 | Msa0334500:intron | 25.0% |
| !! | ATATTCTTTATGTTGGTGAA+TGG | + | chr2_4:52849176-52849195 | Msa0334500:intron | 25.0% |
| ! | CAACATATGGATGAATTAAT+TGG | + | chr2_4:52849523-52849542 | Msa0334500:intron | 25.0% |
| ! | GTTAAAAGTTGTTGTATGTT+AGG | + | chr2_4:52849764-52849783 | Msa0334500:CDS | 25.0% |
| ! | CAAATGTGTACCTAAAATTA+GGG | - | chr2_4:52850060-52850079 | None:intergenic | 25.0% |
| AAAACTTGAGTGATGTTGAT+CGG | - | chr2_4:52845097-52845116 | None:intergenic | 30.0% | |
| !! | CATCTTCTTTTTCATTGAGT+AGG | + | chr2_4:52845292-52845311 | Msa0334500:CDS | 30.0% |
| !! | ATGGAACAGAGTATTTCTTT+TGG | + | chr2_4:52845350-52845369 | Msa0334500:intron | 30.0% |
| ! | TGTGTCTTTTTATAGATGGT+TGG | + | chr2_4:52845439-52845458 | Msa0334500:intron | 30.0% |
| !! | TGTTACATCTCTGGAATATT+TGG | + | chr2_4:52845502-52845521 | Msa0334500:intron | 30.0% |
| GTTAAAGAAAAAGGTTCTGT+TGG | - | chr2_4:52845613-52845632 | None:intergenic | 30.0% | |
| TTCAACACATTCTCTTTGAT+TGG | - | chr2_4:52845964-52845983 | None:intergenic | 30.0% | |
| ATGTCTCGTATAAAAAGGAT+TGG | + | chr2_4:52846055-52846074 | Msa0334500:intron | 30.0% | |
| AAGGGATATTTATGGTCAAT+GGG | - | chr2_4:52846606-52846625 | None:intergenic | 30.0% | |
| TAAGGGATATTTATGGTCAA+TGG | - | chr2_4:52846607-52846626 | None:intergenic | 30.0% | |
| ATTATGCAACATGACAAAGT+AGG | - | chr2_4:52846702-52846721 | None:intergenic | 30.0% | |
| ! | TTGTTTTCATACATGCAGAT+TGG | + | chr2_4:52846762-52846781 | Msa0334500:intron | 30.0% |
| ! | AGCTTATGATTACACACTTT+TGG | + | chr2_4:52846937-52846956 | Msa0334500:intron | 30.0% |
| !!! | TTTTAGGAAGGTATTGAAAC+AGG | - | chr2_4:52847308-52847327 | None:intergenic | 30.0% |
| !! | CTGAGTGATAAATTTTAGGA+AGG | - | chr2_4:52847320-52847339 | None:intergenic | 30.0% |
| ! | CAGACTGAGTGATAAATTTT+AGG | - | chr2_4:52847324-52847343 | None:intergenic | 30.0% |
| CAAAAATGAAACCATTTGTG+AGG | - | chr2_4:52847362-52847381 | None:intergenic | 30.0% | |
| ! | CTCACAAATGGTTTCATTTT+TGG | + | chr2_4:52847360-52847379 | Msa0334500:CDS | 30.0% |
| TACACTATATATGGTGAAAC+AGG | + | chr2_4:52847618-52847637 | Msa0334500:intron | 30.0% | |
| TGCAAAGAACCAATATACTA+TGG | + | chr2_4:52847742-52847761 | Msa0334500:CDS | 30.0% | |
| TGAAGAAATTAGACAGAACA+AGG | + | chr2_4:52847779-52847798 | Msa0334500:CDS | 30.0% | |
| !! | AGTGCTGATAACTATGAATT+TGG | + | chr2_4:52847847-52847866 | Msa0334500:CDS | 30.0% |
| !!! | GAAGGAGTATCTTTTCAATT+CGG | - | chr2_4:52847912-52847931 | None:intergenic | 30.0% |
| TTATTGAGCGTGATTATGTT+GGG | + | chr2_4:52848432-52848451 | Msa0334500:intron | 30.0% | |
| ATGAATCCATTATACCCAAT+TGG | + | chr2_4:52848597-52848616 | Msa0334500:intron | 30.0% | |
| TGAATTCCAATTGGGTATAA+TGG | - | chr2_4:52848606-52848625 | None:intergenic | 30.0% | |
| TGTCATCATGAATTCCAATT+GGG | - | chr2_4:52848614-52848633 | None:intergenic | 30.0% | |
| ATGTCATCATGAATTCCAAT+TGG | - | chr2_4:52848615-52848634 | None:intergenic | 30.0% | |
| AATAATGTGAATCACGTACA+TGG | - | chr2_4:52848662-52848681 | None:intergenic | 30.0% | |
| GATTCACATTATTTGTACGT+TGG | + | chr2_4:52848669-52848688 | Msa0334500:intron | 30.0% | |
| TATGCTAATTGGAAACATCA+AGG | + | chr2_4:52848851-52848870 | Msa0334500:CDS | 30.0% | |
| GAAATTGAAGATGACAAACA+TGG | + | chr2_4:52849240-52849259 | Msa0334500:CDS | 30.0% | |
| !! | TCAGTTGATAAAAAATCTCC+CGG | + | chr2_4:52849363-52849382 | Msa0334500:CDS | 30.0% |
| TATCAAGTACCATCTTTGTT+TGG | + | chr2_4:52849402-52849421 | Msa0334500:CDS | 30.0% | |
| ! | ATCAAGTACCATCTTTGTTT+GGG | + | chr2_4:52849403-52849422 | Msa0334500:CDS | 30.0% |
| AATGCTTCAAAATCTTGTTC+AGG | + | chr2_4:52849489-52849508 | Msa0334500:intron | 30.0% | |
| TCATCCATATGTTGAAAAAG+TGG | - | chr2_4:52849517-52849536 | None:intergenic | 30.0% | |
| ! | TTCTCCTTTTGTGAATACAA+GGG | - | chr2_4:52849579-52849598 | None:intergenic | 30.0% |
| ! | TTTCTCCTTTTGTGAATACA+AGG | - | chr2_4:52849580-52849599 | None:intergenic | 30.0% |
| ! | TAGAATGCTATTTGTGGTAA+GGG | + | chr2_4:52849706-52849725 | Msa0334500:CDS | 30.0% |
| !! | AACTTTTAACTCCATCTCTT+AGG | - | chr2_4:52849754-52849773 | None:intergenic | 30.0% |
| TTCTATCATGGTGTTTAAGA+AGG | + | chr2_4:52849813-52849832 | Msa0334500:CDS | 30.0% | |
| AATATGTGACGCAAAACTTT+AGG | + | chr2_4:52849924-52849943 | Msa0334500:CDS | 30.0% | |
| ATTGTAGTAAACAGACACTT+TGG | - | chr2_4:52849988-52850007 | None:intergenic | 30.0% | |
| GCAAATGTGTACCTAAAATT+AGG | - | chr2_4:52850061-52850080 | None:intergenic | 30.0% | |
| TGAGTTCTTTGTCCTTTATT+CGG | + | chr2_4:52850188-52850207 | Msa0334500:CDS | 30.0% | |
| !! | AAATCATCTTGATTTGGCTT+TGG | - | chr2_4:52850289-52850308 | None:intergenic | 30.0% |
| GAGTCAAAATCATCTTGATT+TGG | - | chr2_4:52850295-52850314 | None:intergenic | 30.0% | |
| AAACTTGAGTGATGTTGATC+GGG | - | chr2_4:52845096-52845115 | None:intergenic | 35.0% | |
| ! | GAAGATGAACAACGTTTTTG+TGG | - | chr2_4:52845279-52845298 | None:intergenic | 35.0% |
| TACTTGATCCAAGAGGAAAA+TGG | + | chr2_4:52845319-52845338 | Msa0334500:CDS | 35.0% | |
| ACTTGATCCAAGAGGAAAAT+GGG | + | chr2_4:52845320-52845339 | Msa0334500:CDS | 35.0% | |
| !! | ATTTCTTTTGGTGTGTGCAA+TGG | + | chr2_4:52845362-52845381 | Msa0334500:intron | 35.0% |
| !! | TTTCTTTTGGTGTGTGCAAT+GGG | + | chr2_4:52845363-52845382 | Msa0334500:intron | 35.0% |
| AGAGTGCATAGAAGAAAAGT+GGG | - | chr2_4:52845401-52845420 | None:intergenic | 35.0% | |
| ! | AAACATAAACGCTCCTCTTT+TGG | + | chr2_4:52845543-52845562 | Msa0334500:CDS | 35.0% |
| ATGATGAATGAAGCCAAAAG+AGG | - | chr2_4:52845559-52845578 | None:intergenic | 35.0% | |
| !!! | TCTTTTGGCTTCATTCATCA+TGG | + | chr2_4:52845558-52845577 | Msa0334500:CDS | 35.0% |
| ! | ATCTTGCTAACTCACGTTTT+AGG | + | chr2_4:52845676-52845695 | Msa0334500:intron | 35.0% |
| ! | TCTTGCTAACTCACGTTTTA+GGG | + | chr2_4:52845677-52845696 | Msa0334500:intron | 35.0% |
| ACATAAGTAGGATTCGACAA+AGG | - | chr2_4:52846039-52846058 | None:intergenic | 35.0% | |
| TCTCGTATAAAAAGGATTGG+AGG | + | chr2_4:52846058-52846077 | Msa0334500:intron | 35.0% | |
| ! | ATAGTGATCGGAAGAGTATA+TGG | - | chr2_4:52846199-52846218 | None:intergenic | 35.0% |
| CATGTTGCATAATACTGAGT+TGG | + | chr2_4:52846709-52846728 | Msa0334500:intron | 35.0% | |
| ! | AATACTGAGTTGGCAAATGA+AGG | + | chr2_4:52846719-52846738 | Msa0334500:intron | 35.0% |
| !! | CACACTTTTGGAAAACTTGT+TGG | + | chr2_4:52846949-52846968 | Msa0334500:intron | 35.0% |
| ! | AATGTCTGATTGCTGATTAG+AGG | - | chr2_4:52846975-52846994 | None:intergenic | 35.0% |
| ! | TGTTTTGCAGATTGTGCTAT+GGG | + | chr2_4:52847215-52847234 | Msa0334500:intron | 35.0% |
| ATTCCATCTTTGTTAGAGCA+AGG | + | chr2_4:52847243-52847262 | Msa0334500:CDS | 35.0% | |
| !!! | GTTTCATTTTTGGAACCGTT+TGG | + | chr2_4:52847370-52847389 | Msa0334500:CDS | 35.0% |
| GTAATCGTTGGTACTTACAT+GGG | - | chr2_4:52847436-52847455 | None:intergenic | 35.0% | |
| AGTAATCGTTGGTACTTACA+TGG | - | chr2_4:52847437-52847456 | None:intergenic | 35.0% | |
| AGTGCATATCAAGTAATCGT+TGG | - | chr2_4:52847448-52847467 | None:intergenic | 35.0% | |
| CGGTTAAATTGTGAGAATCA+TGG | + | chr2_4:52847528-52847547 | Msa0334500:intron | 35.0% | |
| ! | GTATTTGTTGGGACTTCAAA+GGG | + | chr2_4:52847657-52847676 | Msa0334500:CDS | 35.0% |
| GAAATTAGACAGAACAAGGT+TGG | + | chr2_4:52847783-52847802 | Msa0334500:CDS | 35.0% | |
| ! | AGATACTCCTTCCTATCTTT+TGG | + | chr2_4:52847920-52847939 | Msa0334500:CDS | 35.0% |
| ! | GATACTCCTTCCTATCTTTT+GGG | + | chr2_4:52847921-52847940 | Msa0334500:CDS | 35.0% |
| ! | ATACTCCTTCCTATCTTTTG+GGG | + | chr2_4:52847922-52847941 | Msa0334500:CDS | 35.0% |
| GAAAATACCTGAGAGTCATT+AGG | - | chr2_4:52847948-52847967 | None:intergenic | 35.0% | |
| ! | GTGATGATGACTAATGACTA+TGG | + | chr2_4:52848006-52848025 | Msa0334500:intron | 35.0% |
| CGCTCCAAACCTTTATATTA+CGG | + | chr2_4:52848032-52848051 | Msa0334500:intron | 35.0% | |
| CGGTAAAATGTGGATAATCA+CGG | + | chr2_4:52848052-52848071 | Msa0334500:intron | 35.0% | |
| GTGGATAATCACGGTATTTA+AGG | + | chr2_4:52848061-52848080 | Msa0334500:intron | 35.0% | |
| AGGTTGAAATATCATTGCAG+AGG | + | chr2_4:52848081-52848100 | Msa0334500:intron | 35.0% | |
| CTTATTGAGCGTGATTATGT+TGG | + | chr2_4:52848431-52848450 | Msa0334500:intron | 35.0% | |
| ! | TTGTACGTTGGTTGAAGTTA+AGG | + | chr2_4:52848681-52848700 | Msa0334500:intron | 35.0% |
| CAATTAGCATAGTGACTAGA+AGG | - | chr2_4:52848842-52848861 | None:intergenic | 35.0% | |
| CTTCTAGTCACTATGCTAAT+TGG | + | chr2_4:52848840-52848859 | Msa0334500:CDS | 35.0% | |
| !!! | ATAGGCTACTTATTTTTGGC+TGG | - | chr2_4:52849144-52849163 | None:intergenic | 35.0% |
| ! | TCTTTATGTTGGTGAATGGT+AGG | + | chr2_4:52849180-52849199 | Msa0334500:intron | 35.0% |
| TTGATAAAAAATCTCCCGGA+GGG | + | chr2_4:52849367-52849386 | Msa0334500:CDS | 35.0% | |
| !!! | GGTACCACTTTTTCAACATA+TGG | + | chr2_4:52849510-52849529 | Msa0334500:intron | 35.0% |
| AAGTCCCTTGTATTCACAAA+AGG | + | chr2_4:52849572-52849591 | Msa0334500:intron | 35.0% | |
| TGCATACAGTTAACAAGAGA+AGG | + | chr2_4:52849671-52849690 | Msa0334500:intron | 35.0% | |
| CAAATAGCATTCTACGAACT+GGG | - | chr2_4:52849700-52849719 | None:intergenic | 35.0% | |
| ACAAATAGCATTCTACGAAC+TGG | - | chr2_4:52849701-52849720 | None:intergenic | 35.0% | |
| ! | AGTTCGTAGAATGCTATTTG+TGG | + | chr2_4:52849700-52849719 | Msa0334500:CDS | 35.0% |
| ! | GTAGAATGCTATTTGTGGTA+AGG | + | chr2_4:52849705-52849724 | Msa0334500:CDS | 35.0% |
| ! | AGAATGCTATTTGTGGTAAG+GGG | + | chr2_4:52849707-52849726 | Msa0334500:CDS | 35.0% |
| ! | TTAGGAATTGGCTACTTTGA+AGG | - | chr2_4:52849736-52849755 | None:intergenic | 35.0% |
| TAACTCCATCTCTTAGGAAT+TGG | - | chr2_4:52849748-52849767 | None:intergenic | 35.0% | |
| GTTGGAAGACGTTCTATAAA+TGG | - | chr2_4:52849839-52849858 | None:intergenic | 35.0% | |
| TTCAAGTCCAAAAACTTCGA+CGG | - | chr2_4:52849891-52849910 | None:intergenic | 35.0% | |
| ! | AACAAGTGTGCCCTAATTTT+AGG | + | chr2_4:52850047-52850066 | Msa0334500:intron | 35.0% |
| AGTGTTAGATATTACTCACC+TGG | + | chr2_4:52850100-52850119 | Msa0334500:CDS | 35.0% | |
| TTAGATATTACTCACCTGGT+TGG | + | chr2_4:52850104-52850123 | Msa0334500:CDS | 35.0% | |
| AACTTGAGTGATGTTGATCG+GGG | - | chr2_4:52845095-52845114 | None:intergenic | 40.0% | |
| ! | AGGGTATTACTTGATCCAAG+AGG | + | chr2_4:52845312-52845331 | Msa0334500:CDS | 40.0% |
| ! | GTGTGCAATGGGTTTATTTG+TGG | + | chr2_4:52845374-52845393 | Msa0334500:intron | 40.0% |
| ! | GAGAGTGCATAGAAGAAAAG+TGG | - | chr2_4:52845402-52845421 | None:intergenic | 40.0% |
| !! | AAAGGTTCTGTTGGCTTTGA+AGG | - | chr2_4:52845604-52845623 | None:intergenic | 40.0% |
| ATATAATCACCTGAGGCAGA+GGG | - | chr2_4:52845650-52845669 | None:intergenic | 40.0% | |
| AATATAATCACCTGAGGCAG+AGG | - | chr2_4:52845651-52845670 | None:intergenic | 40.0% | |
| TGAGACCCACCAAATTTGTA+TGG | + | chr2_4:52845901-52845920 | Msa0334500:intron | 40.0% | |
| GAGACCCACCAAATTTGTAT+GGG | + | chr2_4:52845902-52845921 | Msa0334500:intron | 40.0% | |
| TGAAGCTATAAGTGACATGC+AGG | - | chr2_4:52846798-52846817 | None:intergenic | 40.0% | |
| ! | CTGTTTTGCAGATTGTGCTA+TGG | + | chr2_4:52847214-52847233 | Msa0334500:intron | 40.0% |
| GATCCTTGCTCTAACAAAGA+TGG | - | chr2_4:52847249-52847268 | None:intergenic | 40.0% | |
| !!! | TCATTTTTGGAACCGTTTGG+TGG | + | chr2_4:52847373-52847392 | Msa0334500:CDS | 40.0% |
| !!! | CATTTTTGGAACCGTTTGGT+GGG | + | chr2_4:52847374-52847393 | Msa0334500:CDS | 40.0% |
| !!! | ATTTTTGGAACCGTTTGGTG+GGG | + | chr2_4:52847375-52847394 | Msa0334500:CDS | 40.0% |
| AGGGTCATGTTGGTATTTGT+TGG | + | chr2_4:52847645-52847664 | Msa0334500:CDS | 40.0% | |
| GGGTCATGTTGGTATTTGTT+GGG | + | chr2_4:52847646-52847665 | Msa0334500:CDS | 40.0% | |
| ! | GGTATTTGTTGGGACTTCAA+AGG | + | chr2_4:52847656-52847675 | Msa0334500:CDS | 40.0% |
| ! | TAGACAGAACAAGGTTGGTT+TGG | + | chr2_4:52847788-52847807 | Msa0334500:CDS | 40.0% |
| ! | GTGATGTTGTCAGCACTTTT+GGG | + | chr2_4:52848751-52848770 | Msa0334500:intron | 40.0% |
| TTAGCATAGTGACTAGAAGG+AGG | - | chr2_4:52848839-52848858 | None:intergenic | 40.0% | |
| TTATGCTAGAGATCGAACGT+AGG | + | chr2_4:52849095-52849114 | Msa0334500:intron | 40.0% | |
| !! | TTTTGGCTGGTCAAATCGAT+CGG | - | chr2_4:52849131-52849150 | None:intergenic | 40.0% |
| TGAAGATGACAAACATGGAG+TGG | + | chr2_4:52849245-52849264 | Msa0334500:CDS | 40.0% | |
| !! | AGTGGTGGATGAACAAAAGA+CGG | + | chr2_4:52849263-52849282 | Msa0334500:CDS | 40.0% |
| TAACTACGAGAGACAGTGTT+GGG | + | chr2_4:52849315-52849334 | Msa0334500:CDS | 40.0% | |
| ! | GTTGATAAAAAATCTCCCGG+AGG | + | chr2_4:52849366-52849385 | Msa0334500:CDS | 40.0% |
| ! | GTACCATCTTTGTTTGGGTT+TGG | + | chr2_4:52849408-52849427 | Msa0334500:CDS | 40.0% |
| TCACCAAACCCAAACAAAGA+TGG | - | chr2_4:52849414-52849433 | None:intergenic | 40.0% | |
| TGAATACAAGGGACTTGACA+CGG | - | chr2_4:52849568-52849587 | None:intergenic | 40.0% | |
| AGTAGCCAATTCCTAAGAGA+TGG | + | chr2_4:52849740-52849759 | Msa0334500:CDS | 40.0% | |
| AGTTGTTGTATGTTAGGACC+AGG | + | chr2_4:52849770-52849789 | Msa0334500:CDS | 40.0% | |
| !! | TCCAACATCATCATCGACTT+TGG | + | chr2_4:52849853-52849872 | Msa0334500:CDS | 40.0% |
| ! | ACCAAAGTCGATGATGATGT+TGG | - | chr2_4:52849857-52849876 | None:intergenic | 40.0% |
| ! | CTTACAACCGTCGAAGTTTT+TGG | + | chr2_4:52849881-52849900 | Msa0334500:CDS | 40.0% |
| !! | CGAAGTTTTTGGACTTGAAG+CGG | + | chr2_4:52849892-52849911 | Msa0334500:CDS | 40.0% |
| !! | CAATTCAATTGGCTTGGAGA+AGG | + | chr2_4:52850146-52850165 | Msa0334500:CDS | 40.0% |
| !! | AATTGGCTTGGAGAAGGTAT+AGG | + | chr2_4:52850152-52850171 | Msa0334500:CDS | 40.0% |
| AAAGAAGTGGACCTTGACAA+AGG | - | chr2_4:52850223-52850242 | None:intergenic | 40.0% | |
| TTTGTCAAGGTCCACTTCTT+TGG | + | chr2_4:52850222-52850241 | Msa0334500:CDS | 40.0% | |
| TCTATCCTCTTCCAAAGAAG+TGG | - | chr2_4:52850236-52850255 | None:intergenic | 40.0% | |
| !! | ATCTTGATTTGGCTTTGGTG+AGG | - | chr2_4:52850284-52850303 | None:intergenic | 40.0% |
| TCGTCATAACATCGTGTTTG+TGG | + | chr2_4:52850313-52850332 | Msa0334500:exon | 40.0% | |
| ACTTGAGTGATGTTGATCGG+GGG | - | chr2_4:52845094-52845113 | None:intergenic | 45.0% | |
| !! | GCGGTGTTGTAGTAGTAGTA+GGG | - | chr2_4:52845135-52845154 | None:intergenic | 45.0% |
| !! | AGCGGTGTTGTAGTAGTAGT+AGG | - | chr2_4:52845136-52845155 | None:intergenic | 45.0% |
| ! | TCTTCAGCCCATTTTCCTCT+TGG | - | chr2_4:52845330-52845349 | None:intergenic | 45.0% |
| !! | GAGGAAAATGGGCTGAAGAA+TGG | + | chr2_4:52845331-52845350 | Msa0334500:CDS | 45.0% |
| GTAACATGTCCGTCATGCAA+CGG | - | chr2_4:52845488-52845507 | None:intergenic | 45.0% | |
| ! | TGACGGACATGTTACATCTC+TGG | + | chr2_4:52845493-52845512 | Msa0334500:intron | 45.0% |
| GGGTCCCATACAAATTTGGT+GGG | - | chr2_4:52845909-52845928 | None:intergenic | 45.0% | |
| TGGGTCCCATACAAATTTGG+TGG | - | chr2_4:52845910-52845929 | None:intergenic | 45.0% | |
| ACGTGGGTCCCATACAAATT+TGG | - | chr2_4:52845913-52845932 | None:intergenic | 45.0% | |
| TAGAGCAAGGATCAATTGCG+TGG | + | chr2_4:52847256-52847275 | Msa0334500:CDS | 45.0% | |
| AGAGCAAGGATCAATTGCGT+GGG | + | chr2_4:52847257-52847276 | Msa0334500:CDS | 45.0% | |
| TATATGGTGAAACAGGCAGC+AGG | + | chr2_4:52847625-52847644 | Msa0334500:intron | 45.0% | |
| ATATGGTGAAACAGGCAGCA+GGG | + | chr2_4:52847626-52847645 | Msa0334500:intron | 45.0% | |
| GGTCACAGAATTCAGAAGCA+AGG | + | chr2_4:52847809-52847828 | Msa0334500:CDS | 45.0% | |
| TTAGGCCCCAAAAGATAGGA+AGG | - | chr2_4:52847930-52847949 | None:intergenic | 45.0% | |
| GTCATTAGGCCCCAAAAGAT+AGG | - | chr2_4:52847934-52847953 | None:intergenic | 45.0% | |
| CGCTCAATAAGCTCACAGTA+GGG | - | chr2_4:52848422-52848441 | None:intergenic | 45.0% | |
| ACGCTCAATAAGCTCACAGT+AGG | - | chr2_4:52848423-52848442 | None:intergenic | 45.0% | |
| ! | GGTGATGTTGTCAGCACTTT+TGG | + | chr2_4:52848750-52848769 | Msa0334500:intron | 45.0% |
| ACCTCCAGAGTACAACAGAA+AGG | + | chr2_4:52848775-52848794 | Msa0334500:CDS | 45.0% | |
| TCCTTTCTGTTGTACTCTGG+AGG | - | chr2_4:52848779-52848798 | None:intergenic | 45.0% | |
| CCATCCTTTCTGTTGTACTC+TGG | - | chr2_4:52848782-52848801 | None:intergenic | 45.0% | |
| CCAGAGTACAACAGAAAGGA+TGG | + | chr2_4:52848779-52848798 | Msa0334500:CDS | 45.0% | |
| ! | TTTGGCTGGTCAAATCGATC+GGG | - | chr2_4:52849130-52849149 | None:intergenic | 45.0% |
| AGATGACAAACATGGAGTGG+TGG | + | chr2_4:52849248-52849267 | Msa0334500:CDS | 45.0% | |
| AACAAAAGACGGTTGCCACA+AGG | + | chr2_4:52849274-52849293 | Msa0334500:CDS | 45.0% | |
| GTAACTACGAGAGACAGTGT+TGG | + | chr2_4:52849314-52849333 | Msa0334500:CDS | 45.0% | |
| ATATCCCTTCTCAAACCCTC+CGG | - | chr2_4:52849385-52849404 | None:intergenic | 45.0% | |
| !! | TTGTTTGGGTTTGGTGAGAC+AGG | + | chr2_4:52849417-52849436 | Msa0334500:CDS | 45.0% |
| TTAGGACCAGGAAACTTCAG+TGG | + | chr2_4:52849782-52849801 | Msa0334500:CDS | 45.0% | |
| TCATCTCCACTGAAGTTTCC+TGG | - | chr2_4:52849791-52849810 | None:intergenic | 45.0% | |
| GTGGAGATGAGCTTCTATCA+TGG | + | chr2_4:52849801-52849820 | Msa0334500:CDS | 45.0% | |
| !! | AGTTTTTGGACTTGAAGCGG+AGG | + | chr2_4:52849895-52849914 | Msa0334500:CDS | 45.0% |
| CTGTGGCAATTCAATTGGCT+TGG | + | chr2_4:52850140-52850159 | Msa0334500:CDS | 45.0% | |
| ! | CTTGGAGAAGGTATAGGCAT+AGG | + | chr2_4:52850158-52850177 | Msa0334500:CDS | 45.0% |
| ! | AAGGTCCACTTCTTTGGAAG+AGG | + | chr2_4:52850228-52850247 | Msa0334500:CDS | 45.0% |
| !!! | AAAAGTTTTTTTTTTTTTTA+GGG | - | chr2_4:52846500-52846519 | None:intergenic | 5.0% |
| !!! | AAAAAGTTTTTTTTTTTTTT+AGG | - | chr2_4:52846501-52846520 | None:intergenic | 5.0% |
| !! | GTAAAAATAAAAAAAAATTA+AGG | - | chr2_4:52846625-52846644 | None:intergenic | 5.0% |
| !! | TGTAAAAAATAAAATAAATT+GGG | - | chr2_4:52849451-52849470 | None:intergenic | 5.0% |
| !! | TTGTAAAAAATAAAATAAAT+TGG | - | chr2_4:52849452-52849471 | None:intergenic | 5.0% |
| ATCGTCGAAGTCATCGTCAG+CGG | - | chr2_4:52845154-52845173 | None:intergenic | 50.0% | |
| CGACGATATCGTCAACAACG+AGG | + | chr2_4:52845167-52845186 | Msa0334500:CDS | 50.0% | |
| ! | CATGCAACGGATAACGGTGA+CGG | - | chr2_4:52845475-52845494 | None:intergenic | 50.0% |
| CACCGTTATCCGTTGCATGA+CGG | + | chr2_4:52845476-52845495 | Msa0334500:intron | 50.0% | |
| GTCCGTCATGCAACGGATAA+CGG | - | chr2_4:52845481-52845500 | None:intergenic | 50.0% | |
| TGTATGGGACCCACGTGATT+TGG | + | chr2_4:52845917-52845936 | Msa0334500:intron | 50.0% | |
| GTGCGTCGAAACCTCACAAA+TGG | + | chr2_4:52847348-52847367 | Msa0334500:CDS | 50.0% | |
| GATAGCGAATCCCCACCAAA+CGG | - | chr2_4:52847388-52847407 | None:intergenic | 50.0% | |
| GAGCAATGTGAGACAACACG+TGG | + | chr2_4:52847697-52847716 | Msa0334500:CDS | 50.0% | |
| TGTGAGACAACACGTGGTTG+TGG | + | chr2_4:52847703-52847722 | Msa0334500:CDS | 50.0% | |
| ! | TTTGGGGCCTAATGACTCTC+AGG | + | chr2_4:52847938-52847957 | Msa0334500:CDS | 50.0% |
| CTGGTCAAATCGATCGGGAA+CGG | - | chr2_4:52849125-52849144 | None:intergenic | 50.0% | |
| TATCCCTTCTCAAACCCTCC+GGG | - | chr2_4:52849384-52849403 | None:intergenic | 50.0% | |
| !! | TGGGTTTGGTGAGACAGGTA+AGG | + | chr2_4:52849422-52849441 | Msa0334500:intron | 50.0% |
| ACTCACCTGGTTGGAGAACT+TGG | + | chr2_4:52850113-52850132 | Msa0334500:CDS | 50.0% | |
| CTCACCTGGTTGGAGAACTT+GGG | + | chr2_4:52850114-52850133 | Msa0334500:CDS | 50.0% | |
| GGCTGCTGTGGCAATTCAAT+TGG | + | chr2_4:52850135-52850154 | Msa0334500:CDS | 50.0% | |
| TGTCCTTTATTCGGCCTCGT+AGG | + | chr2_4:52850197-52850216 | Msa0334500:CDS | 50.0% | |
| TAATCACCTGAGGCAGAGGG+AGG | - | chr2_4:52845647-52845666 | None:intergenic | 55.0% | |
| ! | ATGGGACCCACGTGATTTGG+TGG | + | chr2_4:52845920-52845939 | Msa0334500:intron | 55.0% |
| !! | TGGGACCCACGTGATTTGGT+GGG | + | chr2_4:52845921-52845940 | Msa0334500:intron | 55.0% |
| TGGGTCCCACCAAATCACGT+GGG | - | chr2_4:52845929-52845948 | None:intergenic | 55.0% | |
| ATGGGTCCCACCAAATCACG+TGG | - | chr2_4:52845930-52845949 | None:intergenic | 55.0% | |
| AACAGGCAGCAGGGTCATGT+TGG | + | chr2_4:52847635-52847654 | Msa0334500:intron | 55.0% | |
| TCTCGTAGTTACGCACACGC+TGG | - | chr2_4:52849306-52849325 | None:intergenic | 55.0% | |
| ACATTCATCAACGCCGCGCA+TGG | - | chr2_4:52849344-52849363 | None:intergenic | 55.0% | |
| ATCTCCCGGAGGGTTTGAGA+AGG | + | chr2_4:52849377-52849396 | Msa0334500:CDS | 55.0% | |
| TCTCCCGGAGGGTTTGAGAA+GGG | + | chr2_4:52849378-52849397 | Msa0334500:CDS | 55.0% | |
| TTGGAGAACTTGGGCTGCTG+TGG | + | chr2_4:52850123-52850142 | Msa0334500:CDS | 55.0% | |
| AGGCCTACGAGGCCGAATAA+AGG | - | chr2_4:52850203-52850222 | None:intergenic | 55.0% | |
| GACCTTGACAAAGGCCTACG+AGG | - | chr2_4:52850214-52850233 | None:intergenic | 55.0% | |
| CGATAGCGACGAGTACGACG+AGG | + | chr2_4:52845197-52845216 | Msa0334500:CDS | 60.0% | |
| CATCATCCTCCCTCTGCCTC+AGG | + | chr2_4:52845638-52845657 | Msa0334500:CDS | 60.0% | |
| ACACGCTGGCGAAGTCCTTG+TGG | - | chr2_4:52849292-52849311 | None:intergenic | 60.0% | |
| GCAGCCCAAGTTCTCCAACC+AGG | - | chr2_4:52850121-52850140 | None:intergenic | 60.0% | |
| GGCCTCGTAGGCCTTTGTCA+AGG | + | chr2_4:52850209-52850228 | Msa0334500:CDS | 60.0% | |
| ! | CAGTGTTGGGCTGCCATGCG+CGG | + | chr2_4:52849328-52849347 | Msa0334500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 52845087 | 52850376 | 52845087 | ID=Msa0334500;Name=Msa0334500 |
| chr2_4 | mRNA | 52845087 | 52850376 | 52845087 | ID=Msa0334500-mRNA-1;Parent=Msa0334500;Name=Msa0334500-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.71|0.75|1|1|1|8|55|599 |
| chr2_4 | exon | 52845087 | 52845359 | 52845087 | ID=Msa0334500-mRNA-1:exon:15992;Parent=Msa0334500-mRNA-1 |
| chr2_4 | exon | 52845531 | 52845659 | 52845531 | ID=Msa0334500-mRNA-1:exon:15993;Parent=Msa0334500-mRNA-1 |
| chr2_4 | exon | 52847225 | 52847437 | 52847225 | ID=Msa0334500-mRNA-1:exon:15994;Parent=Msa0334500-mRNA-1 |
| chr2_4 | exon | 52847640 | 52847959 | 52847640 | ID=Msa0334500-mRNA-1:exon:15995;Parent=Msa0334500-mRNA-1 |
| chr2_4 | exon | 52848764 | 52848872 | 52848764 | ID=Msa0334500-mRNA-1:exon:15996;Parent=Msa0334500-mRNA-1 |
| chr2_4 | exon | 52849202 | 52849438 | 52849202 | ID=Msa0334500-mRNA-1:exon:15997;Parent=Msa0334500-mRNA-1 |
| chr2_4 | exon | 52849680 | 52849945 | 52849680 | ID=Msa0334500-mRNA-1:exon:15998;Parent=Msa0334500-mRNA-1 |
| chr2_4 | exon | 52850069 | 52850376 | 52850069 | ID=Msa0334500-mRNA-1:exon:15999;Parent=Msa0334500-mRNA-1 |
| chr2_4 | CDS | 52845087 | 52845359 | 52845087 | ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1 |
| chr2_4 | CDS | 52845531 | 52845659 | 52845531 | ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1 |
| chr2_4 | CDS | 52847225 | 52847437 | 52847225 | ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1 |
| chr2_4 | CDS | 52847640 | 52847959 | 52847640 | ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1 |
| chr2_4 | CDS | 52848764 | 52848872 | 52848764 | ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1 |
| chr2_4 | CDS | 52849202 | 52849438 | 52849202 | ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1 |
| chr2_4 | CDS | 52849680 | 52849945 | 52849680 | ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1 |
| chr2_4 | CDS | 52850069 | 52850321 | 52850069 | ID=Msa0334500-mRNA-1:cds;Parent=Msa0334500-mRNA-1 |
| chr2_4 | three_prime_UTR | 52850322 | 52850376 | 52850322 | ID=Msa0334500-mRNA-1:three_prime_utr;Parent=Msa0334500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
