AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1164170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164170 MtrunA17_Chr7g0261911 98.371 491 6 1 1 491 1 489 0.0 991
Msa1164170 MtrunA17_Chr1g0190301 44.444 423 177 11 72 491 21 388 6.27e-96 295
Msa1164170 MtrunA17_Chr7g0274471 47.185 373 161 10 72 439 49 390 1.66e-90 283
Msa1164170 MtrunA17_Chr7g0258551 54.375 160 65 2 259 418 207 358 1.20e-55 190
Msa1164170 MtrunA17_Chr1g0175091 59.441 143 56 2 254 396 248 388 1.13e-54 189
Msa1164170 MtrunA17_Chr2g0291021 64.493 138 46 2 264 398 49 186 1.05e-51 178
Msa1164170 MtrunA17_Chr7g0254981 54.717 159 63 3 243 397 33 186 1.19e-49 171
Msa1164170 MtrunA17_Chr6g0461641 52.667 150 53 3 260 392 38 186 2.53e-44 160
Msa1164170 MtrunA17_Chr2g0321461 48.765 162 63 3 251 392 32 193 4.39e-40 149
Msa1164170 MtrunA17_Chr8g0356501 39.130 207 107 6 264 457 37 237 3.48e-37 139
Msa1164170 MtrunA17_Chr5g0409731 50.355 141 58 2 264 392 25 165 6.19e-37 137
Msa1164170 MtrunA17_Chr5g0417521 43.537 147 67 2 260 392 11 155 1.00e-36 139
Msa1164170 MtrunA17_Chr4g0042451 46.575 146 63 3 260 392 13 156 5.59e-36 136
Msa1164170 MtrunA17_Chr1g0175071 44.966 149 76 2 250 393 158 305 2.45e-34 131
Msa1164170 MtrunA17_Chr7g0242521 50.000 140 56 3 255 386 4 137 8.80e-34 127
Msa1164170 MtrunA17_Chr2g0290991 41.615 161 75 3 260 405 35 191 3.26e-33 128
Msa1164170 MtrunA17_Chr2g0310011 47.692 130 59 2 264 387 35 161 6.36e-33 128
Msa1164170 MtrunA17_Chr1g0197171 33.466 251 139 8 248 481 28 267 3.10e-31 122
Msa1164170 MtrunA17_Chr1g0175081 53.333 75 35 0 254 328 12 86 4.47e-25 99.4
Msa1164170 MtrunA17_Chr7g0258531 38.509 161 91 3 231 389 185 339 6.37e-25 105
Msa1164170 MtrunA17_Chr1g0162931 67.857 56 18 0 265 320 19 74 1.34e-19 89.0
Msa1164170 MtrunA17_Chr1g0210911 66.071 56 19 0 265 320 23 78 2.67e-19 89.0
Msa1164170 MtrunA17_Chr2g0288601 61.290 62 24 0 253 314 60 121 3.28e-19 83.6
Msa1164170 MtrunA17_Chr7g0243081 64.286 56 20 0 265 320 72 127 8.28e-19 87.8
Msa1164170 MtrunA17_Chr2g0320231 67.857 56 18 0 265 320 98 153 8.67e-19 88.2
Msa1164170 MtrunA17_Chr8g0379121 66.071 56 19 0 265 320 112 167 1.07e-18 88.2
Msa1164170 MtrunA17_Chr1g0154261 62.121 66 25 0 265 330 127 192 1.09e-18 86.7
Msa1164170 MtrunA17_Chr8g0366281 54.430 79 34 1 252 328 161 239 1.19e-18 87.4
Msa1164170 MtrunA17_Chr3g0095611 56.140 57 25 0 264 320 19 75 2.53e-18 83.6
Msa1164170 MtrunA17_Chr6g0479431 67.857 56 18 0 265 320 203 258 6.19e-18 85.5
Msa1164170 MtrunA17_Chr3g0109981 59.420 69 26 1 265 331 275 343 1.16e-17 85.5
Msa1164170 MtrunA17_Chr5g0410741 61.905 63 24 0 258 320 213 275 1.76e-17 84.3
Msa1164170 MtrunA17_Chr2g0283951 58.209 67 27 1 265 331 90 155 3.87e-17 83.2
Msa1164170 MtrunA17_Chr4g0062921 52.778 72 34 0 255 326 226 297 1.05e-14 76.3
Msa1164170 MtrunA17_Chr2g0304841 58.621 58 23 1 260 317 209 265 3.92e-14 75.1
Msa1164170 MtrunA17_Chr4g0009901 50.000 70 34 1 264 333 168 236 5.71e-14 72.4
Msa1164170 MtrunA17_Chr4g0045361 53.846 65 30 0 264 328 274 338 1.56e-13 72.4
Msa1164170 MtrunA17_Chr4g0009981 46.154 91 46 3 256 344 108 197 1.92e-13 70.5
Msa1164170 MtrunA17_Chr5g0422621 48.718 78 40 0 240 317 174 251 2.38e-13 71.2
Msa1164170 MtrunA17_Chr1g0198601 52.381 63 30 0 264 326 211 273 5.35e-13 70.5
Msa1164170 MtrunA17_Chr7g0275401 59.259 54 21 1 264 317 192 244 5.69e-13 69.7
Msa1164170 MtrunA17_Chr4g0009851 44.565 92 48 3 255 344 160 250 1.01e-12 68.9
Msa1164170 MtrunA17_Chr1g0161431 53.968 63 28 1 260 322 196 257 1.10e-12 70.5
Msa1164170 MtrunA17_Chr4g0067981 44.444 99 40 4 260 347 211 305 1.74e-12 69.7
Msa1164170 MtrunA17_Chr1g0149841 51.471 68 32 1 260 327 187 253 2.57e-12 68.9
Msa1164170 MtrunA17_Chr3g0137101 53.968 63 28 1 260 322 194 255 2.59e-12 69.3
Msa1164170 MtrunA17_Chr4g0031961 39.080 87 52 1 231 317 98 183 3.19e-12 67.4
Msa1164170 MtrunA17_Chr5g0402631 52.239 67 31 1 261 326 211 277 3.90e-12 67.8
Msa1164170 MtrunA17_Chr4g0074411 46.835 79 40 2 260 338 197 273 7.21e-12 67.8
Msa1164170 MtrunA17_Chr4g0074401 51.562 64 30 1 260 323 199 261 7.30e-12 67.8
Msa1164170 MtrunA17_Chr7g0255711 55.556 54 23 1 264 317 91 143 9.19e-12 65.9
Msa1164170 MtrunA17_Chr4g0054981 59.259 54 21 1 264 317 310 362 1.04e-11 67.0
Msa1164170 MtrunA17_Chr2g0294911 49.206 63 31 1 260 322 207 268 1.76e-11 66.6
Msa1164170 MtrunA17_Chr1g0149831 50.000 68 30 1 260 327 124 187 1.77e-11 63.9
Msa1164170 MtrunA17_Chr5g0400241 37.615 109 53 3 222 317 257 363 6.80e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164170 AT4G28610.1 47.672 451 165 19 1 442 1 389 4.20e-108 327
Msa1164170 AT5G29000.2 46.582 395 180 8 18 406 5 374 1.03e-94 293
Msa1164170 AT5G29000.1 49.711 346 144 7 67 406 10 331 8.10e-93 287
Msa1164170 AT5G29000.3 49.711 346 144 7 67 406 10 331 8.10e-93 287
Msa1164170 AT3G04450.4 49.408 338 143 11 67 395 14 332 1.51e-84 266
Msa1164170 AT3G04450.2 49.408 338 143 11 67 395 14 332 1.51e-84 266
Msa1164170 AT3G04450.1 49.408 338 143 11 67 395 54 372 6.47e-84 266
Msa1164170 AT2G20400.1 48.120 266 112 7 139 393 110 360 6.34e-60 202
Msa1164170 AT2G20400.2 47.940 267 112 8 139 393 110 361 3.49e-58 197
Msa1164170 AT5G29000.4 40.252 318 164 6 18 332 5 299 8.98e-55 186
Msa1164170 AT5G06800.1 56.173 162 70 1 234 395 162 322 4.14e-54 186
Msa1164170 AT2G01060.1 64.085 142 49 2 259 398 10 151 6.41e-53 180
Msa1164170 AT5G06800.2 54.491 167 70 2 234 395 162 327 7.72e-52 180
Msa1164170 AT3G13040.3 54.348 184 72 4 253 431 233 409 1.78e-49 176
Msa1164170 AT3G13040.1 54.348 184 72 4 253 431 233 409 1.78e-49 176
Msa1164170 AT3G13040.2 54.348 184 72 4 253 431 233 409 1.78e-49 176
Msa1164170 AT3G04450.3 41.727 278 133 11 67 334 54 312 8.75e-47 165
Msa1164170 AT3G24120.1 54.483 145 54 3 264 396 41 185 1.09e-44 159
Msa1164170 AT4G13640.1 53.793 145 55 2 264 396 37 181 6.95e-44 157
Msa1164170 AT3G24120.2 53.378 148 54 4 264 396 41 188 1.26e-42 153
Msa1164170 AT4G13640.2 52.703 148 55 3 264 396 37 184 7.39e-42 151
Msa1164170 AT3G04030.3 50.676 148 58 2 260 392 41 188 7.38e-41 151
Msa1164170 AT5G18240.1 44.000 200 83 5 242 417 26 220 3.59e-40 149
Msa1164170 AT5G18240.4 44.000 200 83 5 242 417 26 220 3.59e-40 149
Msa1164170 AT1G69580.1 46.497 157 67 1 253 392 23 179 5.31e-39 145
Msa1164170 AT1G69580.2 46.875 160 63 3 253 392 23 180 1.36e-38 144
Msa1164170 AT3G04030.2 50.000 148 58 3 260 392 41 187 2.74e-38 144
Msa1164170 AT1G79430.2 46.763 139 65 2 264 396 34 169 1.44e-37 141
Msa1164170 AT5G18240.5 43.500 200 82 6 242 417 26 218 3.69e-37 141
Msa1164170 AT3G04030.1 47.973 148 56 3 260 392 41 182 2.89e-35 135
Msa1164170 AT5G18240.2 42.000 200 81 6 242 417 26 214 1.51e-34 134
Msa1164170 AT5G18240.3 42.000 200 81 6 242 417 26 214 1.51e-34 134
Msa1164170 AT2G01060.2 63.725 102 35 2 299 398 1 102 8.35e-33 125
Msa1164170 AT5G45580.1 43.709 151 67 4 264 396 7 157 2.85e-32 124
Msa1164170 AT5G45580.2 43.709 151 67 4 264 396 23 173 4.22e-32 124
Msa1164170 AT3G12730.1 42.553 141 73 2 264 396 23 163 1.47e-30 119
Msa1164170 AT5G06800.3 53.125 96 45 0 234 329 162 257 1.77e-26 108
Msa1164170 AT3G04030.5 45.536 112 46 2 296 392 1 112 1.49e-20 92.8
Msa1164170 AT2G42660.1 59.091 66 27 0 265 330 51 116 1.67e-20 91.3
Msa1164170 AT1G79430.1 41.121 107 54 3 296 396 1 104 2.18e-20 92.0
Msa1164170 AT1G14600.1 69.643 56 17 0 265 320 24 79 7.99e-20 89.4
Msa1164170 AT5G42630.2 45.455 110 47 2 229 331 69 172 3.30e-19 87.0
Msa1164170 AT2G02060.2 71.698 53 15 0 265 317 30 82 4.14e-19 87.4
Msa1164170 AT2G02060.1 71.698 53 15 0 265 317 30 82 4.14e-19 87.4
Msa1164170 AT5G42630.1 45.455 110 47 2 229 331 69 172 6.78e-19 87.0
Msa1164170 AT4G04605.1 56.522 69 30 0 265 333 15 83 9.47e-19 85.5
Msa1164170 AT4G17695.1 55.844 77 32 1 254 328 154 230 1.18e-18 87.4
Msa1164170 AT2G40260.1 66.071 56 19 0 265 320 83 138 1.98e-18 87.8
Msa1164170 AT1G32240.2 43.925 107 54 1 225 331 180 280 2.20e-18 87.0
Msa1164170 AT5G16560.1 60.274 73 26 2 265 334 220 292 3.11e-18 87.0
Msa1164170 AT1G32240.1 43.925 107 54 1 225 331 180 280 3.25e-18 87.0
Msa1164170 AT2G38300.1 54.286 70 32 0 265 334 55 124 4.04e-18 85.9
Msa1164170 AT2G06020.1 54.386 57 26 0 264 320 86 142 1.46e-15 77.8
Msa1164170 AT3G04030.4 41.964 112 44 3 296 392 1 106 1.89e-15 77.8
Msa1164170 AT2G03500.1 52.778 72 34 0 255 326 224 295 5.62e-15 77.4
Msa1164170 AT4G04580.1 52.308 65 30 1 265 329 15 78 1.63e-14 72.0
Msa1164170 AT5G18240.6 36.986 146 60 5 296 417 1 138 1.95e-14 74.7
Msa1164170 AT1G25550.1 60.000 60 24 0 264 323 209 268 3.49e-14 74.3
Msa1164170 AT4G37180.1 55.385 65 28 1 254 317 199 263 3.15e-13 71.6
Msa1164170 AT4G37180.2 55.385 65 28 1 254 317 206 270 3.72e-13 71.2
Msa1164170 AT1G68670.1 55.556 63 28 0 264 326 215 277 4.19e-13 70.9
Msa1164170 AT3G12730.2 34.862 109 63 2 296 396 1 109 4.43e-13 68.2
Msa1164170 AT3G62670.1 56.452 62 23 1 260 317 207 268 4.85e-13 71.2
Msa1164170 AT1G49560.1 33.508 191 104 7 148 326 75 254 5.25e-13 70.5
Msa1164170 AT5G59570.2 47.692 65 33 1 253 317 130 193 5.99e-13 70.1
Msa1164170 AT5G59570.1 47.692 65 33 1 253 317 130 193 5.99e-13 70.1
Msa1164170 AT3G16857.3 59.322 59 23 1 264 322 167 224 7.29e-13 71.2
Msa1164170 AT3G16857.2 59.322 59 23 1 264 322 237 294 8.80e-13 71.2
Msa1164170 AT3G16857.1 59.322 59 23 1 264 322 237 294 9.58e-13 71.2
Msa1164170 AT5G44190.1 50.769 65 31 1 256 320 139 202 1.27e-12 69.7
Msa1164170 AT5G44190.2 50.769 65 31 1 256 320 139 202 1.41e-12 69.3
Msa1164170 AT2G40970.1 45.455 77 37 2 246 322 91 162 1.98e-12 67.8
Msa1164170 AT5G05090.1 55.556 54 23 1 264 317 81 133 3.24e-12 67.4
Msa1164170 AT4G04555.1 51.786 56 27 0 265 320 15 70 3.48e-12 63.5
Msa1164170 AT3G10760.1 55.556 54 23 1 264 317 105 157 3.68e-12 68.2
Msa1164170 AT3G46640.2 55.556 54 23 1 264 317 144 196 4.66e-12 67.4
Msa1164170 AT3G46640.1 55.556 54 23 1 264 317 144 196 4.66e-12 67.4
Msa1164170 AT3G46640.3 55.556 54 23 1 264 317 144 196 5.09e-12 67.4
Msa1164170 AT5G58080.1 59.259 54 21 1 264 317 194 246 6.99e-12 68.2
Msa1164170 AT3G25790.1 56.364 55 24 0 269 323 201 255 7.25e-12 67.4
Msa1164170 AT2G20570.1 53.125 64 29 1 257 320 146 208 1.69e-11 66.6
Msa1164170 AT1G25550.2 60.784 51 20 0 264 314 209 259 2.52e-11 64.7
Msa1164170 AT4G37180.3 53.226 62 28 1 254 314 199 260 5.37e-11 63.9
Msa1164170 AT1G13300.1 49.206 63 32 0 264 326 181 243 5.79e-11 64.3
Msa1164170 AT1G49190.1 52.632 57 24 1 264 317 215 271 6.33e-11 64.7

Find 171 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAACACCTTATCTTATT+TGG 0.122881 7_4:+55716455 Msa1164170:three_prime_UTR
GCTGTTCATGCAGCCGTTTC+TGG 0.141434 7_4:-55714206 None:intergenic
ACGATACTTTGACTTCTAAT+TGG 0.176459 7_4:+55711336 Msa1164170:CDS
TGGCTTCACCTTATCTTATT+AGG 0.200314 7_4:+55716519 Msa1164170:three_prime_UTR
ATCTGGTGTTGAGCCATTTA+AGG 0.223957 7_4:+55715964 Msa1164170:CDS
CTTAGAAGCTTGTTGAGATT+TGG 0.249037 7_4:-55716167 None:intergenic
TGACTTGCAATGGTCCATTT+TGG 0.253593 7_4:-55716071 None:intergenic
ATGCGCTTTGCACCTTCTTT+TGG 0.279409 7_4:-55709957 None:intergenic
TTACCGTATTCTTCAAATAA+TGG 0.301607 7_4:+55711104 Msa1164170:CDS
TCTATTTGCACCACATGATT+AGG 0.303059 7_4:-55709798 None:intergenic
TCTGGGGTATGTCTCCTCTA+AGG 0.303816 7_4:-55710862 None:intergenic
CAAATCTCAACAAGCTTCTA+AGG 0.304177 7_4:+55716168 Msa1164170:CDS
CGGCTGCGAATCAGAAAATC+TGG 0.314389 7_4:-55710880 None:intergenic
GCTGATGATGATGCCTTAAA+TGG 0.316466 7_4:-55715977 None:intergenic
TCCAATTCACTTGCCGTTCC+CGG 0.321068 7_4:+55710008 Msa1164170:five_prime_UTR
CATCTGTCCTTTGACGCTTA+GGG 0.327736 7_4:-55716228 None:intergenic
TCATCTGTCCTTTGACGCTT+AGG 0.327888 7_4:-55716229 None:intergenic
CAACAACTTCCAGCTCTATC+TGG 0.330349 7_4:+55711561 Msa1164170:CDS
TCTTATTTGGTATCCTGGTT+AGG 0.333495 7_4:+55716468 Msa1164170:three_prime_UTR
TCATGTTAAAAGCCACTTAC+AGG 0.337959 7_4:+55711854 Msa1164170:CDS
TCCCTATGTTATTCAGTTGC+TGG 0.340671 7_4:-55710797 None:intergenic
CCTTATCTTATTTGGTATCC+TGG 0.348967 7_4:+55716463 Msa1164170:three_prime_UTR
GATGACAACTTGTCTGGTTT+GGG 0.349683 7_4:+55710595 Msa1164170:five_prime_UTR
TGAATTGGAAGCATCCAAAA+TGG 0.350129 7_4:+55716057 Msa1164170:CDS
GAGCGGTGCCTGCAATATTA+TGG 0.356005 7_4:+55711250 Msa1164170:CDS
ACCGGGAACGGCAAGTGAAT+TGG 0.357963 7_4:-55710009 None:intergenic
TATGTCTTCCACGCCATAAT+TGG 0.360306 7_4:-55716674 None:intergenic
TACATACCACATCGAAATTT+AGG 0.361004 7_4:-55716567 None:intergenic
CTCGGTGGCCATAATATTGC+AGG 0.370683 7_4:-55711258 None:intergenic
TGTCCATCCAACACCCTTAG+AGG 0.370709 7_4:+55710848 Msa1164170:CDS
AGATCTTGAGCCAAAGGTTA+AGG 0.371334 7_4:+55711385 Msa1164170:CDS
TGATGACAACTTGTCTGGTT+TGG 0.375233 7_4:+55710594 Msa1164170:five_prime_UTR
TTGTGAAGATGACTTTGAAA+TGG 0.383554 7_4:-55711508 None:intergenic
ATGAGCTTCAGCACACCCTT+AGG 0.390446 7_4:-55711807 None:intergenic
TGAGCTTCACGAGGCATTTG+TGG 0.391511 7_4:+55711659 Msa1164170:CDS
CATAGAGCTCTATAACTTAA+CGG 0.395100 7_4:+55716350 Msa1164170:three_prime_UTR
CTGAATAACATAGGGATGTC+TGG 0.398764 7_4:+55710804 Msa1164170:CDS
TGGAAGTTGTTGGTGACCTT+GGG 0.401493 7_4:-55711550 None:intergenic
AGGATATGAAGTAAGGGATT+TGG 0.401874 7_4:+55709927 Msa1164170:five_prime_UTR
GTAATGAAAACCTTAACCTT+TGG 0.402542 7_4:-55711395 None:intergenic
AAAATGGACCATTGCAAGTC+AGG 0.405684 7_4:+55716073 Msa1164170:CDS
TAGAGACGAAATATCTTCAA+TGG 0.411601 7_4:-55712759 None:intergenic
ATGAATCAGTATTGTGTTGT+CGG 0.415847 7_4:-55716286 None:intergenic
TGCAGGCACCGCTCTCTACT+TGG 0.420513 7_4:-55711241 None:intergenic
GGAGCGTAGGATATGAAGTA+AGG 0.423896 7_4:+55709920 Msa1164170:five_prime_UTR
ATTGCTTCTCAAACATCATC+TGG 0.427142 7_4:-55715937 None:intergenic
TTTGAGAAGCAATGCAAATC+TGG 0.429240 7_4:+55715947 Msa1164170:CDS
CCAATGGAAACAGTGCTTCA+TGG 0.436394 7_4:+55711159 Msa1164170:CDS
CAGATAGAGCTGGAAGTTGT+TGG 0.437915 7_4:-55711560 None:intergenic
GTATCTATCACGCGCTTGAA+TGG 0.438770 7_4:+55709899 Msa1164170:five_prime_UTR
TTTGGTAGGAGAGTCTTTCA+TGG 0.441273 7_4:-55716032 None:intergenic
GTCATTGAGTAACATGGCTT+CGG 0.445080 7_4:+55711076 Msa1164170:CDS
TGAGCTTCAGCACACCCTTA+GGG 0.446411 7_4:-55711806 None:intergenic
AGTCCATCGCATTCGTGGCT+TGG 0.450820 7_4:-55711634 None:intergenic
GGTCCATTATTTGAAGAATA+CGG 0.453015 7_4:-55711107 None:intergenic
TAGATTGATGACAACTTGTC+TGG 0.454398 7_4:+55710589 Msa1164170:intron
AGAAGCTTGTTGAGATTTGG+AGG 0.454821 7_4:-55716164 None:intergenic
AGAGACGAAATATCTTCAAT+GGG 0.455908 7_4:-55712758 None:intergenic
TTTGACGCTTAGGGGCTTGA+GGG 0.457431 7_4:-55716219 None:intergenic
GTTGTTGGTGACCTTGGGAT+TGG 0.458647 7_4:-55711545 None:intergenic
TGCGAATAGAAGAGCAAGGC+AGG 0.459388 7_4:+55715909 Msa1164170:CDS
GGCAAGTGAATTGGATTTGA+GGG 0.459650 7_4:-55710000 None:intergenic
CTGGAAGTTGTTGGTGACCT+TGG 0.461134 7_4:-55711551 None:intergenic
GAAAGTATCGTCACCGGGAA+CGG 0.461274 7_4:-55710021 None:intergenic
CTAGTGTACAGTGCAGATAA+TGG 0.461503 7_4:+55716499 Msa1164170:three_prime_UTR
CCATGAAGCACTGTTTCCAT+TGG 0.464624 7_4:-55711159 None:intergenic
ACAAATGCCTCGTGAAGCTC+AGG 0.468546 7_4:-55711657 None:intergenic
AAGCCCTCATTGAACACAAC+AGG 0.473507 7_4:-55716384 None:intergenic
TATCGTCATCACTGATTAGC+TGG 0.473545 7_4:-55711319 None:intergenic
CCCTATGTTATTCAGTTGCT+GGG 0.475601 7_4:-55710796 None:intergenic
TACTTGGTTATTATCAATTG+AGG 0.476017 7_4:-55711225 None:intergenic
GCAGAATTTGCTGAGGAAGA+TGG 0.480337 7_4:-55711606 None:intergenic
CTTTGACGCTTAGGGGCTTG+AGG 0.481559 7_4:-55716220 None:intergenic
TATGTCTCCTCTAAGGGTGT+TGG 0.482313 7_4:-55710855 None:intergenic
TGAAGATCGTTAGAATATCC+AGG 0.483197 7_4:-55710996 None:intergenic
GTACTACCATTAGCTTGATC+AGG 0.485584 7_4:-55716097 None:intergenic
CGGCAAGTGAATTGGATTTG+AGG 0.488028 7_4:-55710001 None:intergenic
TGATTCGCAGCCGACTTATG+TGG 0.488057 7_4:+55710890 Msa1164170:CDS
TTAACAATTTAGGAAAGTAA+TGG 0.488431 7_4:+55710737 Msa1164170:intron
TTATTTGAAGAATACGGTAA+TGG 0.489486 7_4:-55711101 None:intergenic
TTCTAAGCGAAATGATTGGC+AGG 0.490400 7_4:+55711286 Msa1164170:CDS
TCAGCCATTGAAAATCCATC+TGG 0.492315 7_4:+55715995 Msa1164170:CDS
TAATGTGTTGATGTTGTAGA+AGG 0.498623 7_4:-55711134 None:intergenic
TCAGGAGTCCATCGCATTCG+TGG 0.504175 7_4:-55711639 None:intergenic
TCAGGACCTGATCAAGCTAA+TGG 0.505420 7_4:+55716091 Msa1164170:CDS
CCAGGATACCAAATAAGATA+AGG 0.507951 7_4:-55716463 None:intergenic
TCAACGAAATGCAGAAATAC+AGG 0.509552 7_4:+55711942 Msa1164170:intron
AGAAATCAAGAAAACTAGGC+AGG 0.510355 7_4:-55711193 None:intergenic
TGTCCTGTTGTGTTCAATGA+GGG 0.512157 7_4:+55716381 Msa1164170:three_prime_UTR
GATCTTTCAATTGAGAAAGC+AGG 0.512244 7_4:-55710768 None:intergenic
GCTGGAAGCAGTTGAGAAGC+TGG 0.513069 7_4:+55716138 Msa1164170:CDS
CTGAAGCTCATGAAAGTTGA+AGG 0.515183 7_4:+55711819 Msa1164170:CDS
CACGGTTGAGGAAAGCTCGC+TGG 0.521650 7_4:+55716120 Msa1164170:CDS
ATAAGTTCTAGTGGAGCAGT+TGG 0.527402 7_4:+55710954 Msa1164170:CDS
TTCTACAGGAGCTACCCCTA+AGG 0.528407 7_4:+55711791 Msa1164170:intron
TAATGGTAGTACCACGGTTG+AGG 0.529038 7_4:+55716108 Msa1164170:CDS
AGCGAAATGATTGGCAGGAG+TGG 0.533310 7_4:+55711291 Msa1164170:CDS
GTGAATTGGATTTGAGGGAG+TGG 0.535580 7_4:-55709995 None:intergenic
CTCAAGCCCCTAAGCGTCAA+AGG 0.535629 7_4:+55716221 Msa1164170:CDS
GATATTGTCCTAATAAGATA+AGG 0.537943 7_4:-55716527 None:intergenic
GGCTGCGAATCAGAAAATCT+GGG 0.541784 7_4:-55710879 None:intergenic
TGCAGATGGAGGTCCAGAAA+CGG 0.542705 7_4:+55714193 Msa1164170:CDS
ATCTGTCCTTTGACGCTTAG+GGG 0.544083 7_4:-55716227 None:intergenic
GCAGAGAAATCAAGAAAACT+AGG 0.544687 7_4:-55711197 None:intergenic
GATCAGGTCCTGACTTGCAA+TGG 0.546117 7_4:-55716081 None:intergenic
TATTCAAGATCTTGAGCCAA+AGG 0.548434 7_4:+55711379 Msa1164170:CDS
GAAATCAAGAAAACTAGGCA+GGG 0.552022 7_4:-55711192 None:intergenic
TCAAGTCATATAAGTTCTAG+TGG 0.552138 7_4:+55710945 Msa1164170:CDS
GCGAAATGATTGGCAGGAGT+GGG 0.552812 7_4:+55711292 Msa1164170:CDS
CTGGGGTATGTCTCCTCTAA+GGG 0.553089 7_4:-55710861 None:intergenic
CCCAGCAACTGAATAACATA+GGG 0.563465 7_4:+55710796 Msa1164170:CDS
ATGTCCTGTTGTGTTCAATG+AGG 0.564390 7_4:+55716380 Msa1164170:three_prime_UTR
ACATCAACACATTATTCCAA+TGG 0.565212 7_4:+55711143 Msa1164170:CDS
TATCTAACGGTGTGCACGTG+AGG 0.566882 7_4:-55709823 None:intergenic
TAAGTTCTAGTGGAGCAGTT+GGG 0.568512 7_4:+55710955 Msa1164170:CDS
GGATGGACAGACAACGATGA+AGG 0.572042 7_4:-55710834 None:intergenic
AGAATTGAAAGTATCGTCAC+CGG 0.573863 7_4:-55710027 None:intergenic
GCCCAGCAACTGAATAACAT+AGG 0.578966 7_4:+55710795 Msa1164170:CDS
AAATGGTACATACCTGTAAG+TGG 0.579249 7_4:-55711866 None:intergenic
TTCGCAGTCATTGAGTAACA+TGG 0.580455 7_4:+55711070 Msa1164170:CDS
TATGTACCTTCAGATGACTC+TGG 0.581225 7_4:-55711980 None:intergenic
GGAAGCTCTACGACTGCAGA+TGG 0.586016 7_4:+55714179 Msa1164170:CDS
ACGGCTGCATGAACAGCTTG+AGG 0.587387 7_4:+55714212 Msa1164170:CDS
TCTCCTCTAAGGGTGTTGGA+TGG 0.587533 7_4:-55710851 None:intergenic
GGCTGTTGCAGAATTTGCTG+AGG 0.587897 7_4:-55711613 None:intergenic
GAAGATCGTTAGAATATCCA+GGG 0.589349 7_4:-55710995 None:intergenic
TGACAGTGGTATTGAGATCA+CGG 0.590168 7_4:+55714158 Msa1164170:intron
CTGACTTAAAACTAAATGAA+AGG 0.590363 7_4:-55716416 None:intergenic
TCTACAGGAGCTACCCCTAA+GGG 0.595403 7_4:+55711792 Msa1164170:intron
AAATCAAGAAAACTAGGCAG+GGG 0.598415 7_4:-55711191 None:intergenic
GAGGCTGTCAATCAACTTGG+TGG 0.598508 7_4:+55711681 Msa1164170:CDS
GTATTCTTCAAATAATGGAC+CGG 0.599927 7_4:+55711109 Msa1164170:CDS
TAACGAAAACTCTCACCCGC+TGG 0.603699 7_4:+55709856 Msa1164170:five_prime_UTR
CAGCCAAGCCACGAATGCGA+TGG 0.603901 7_4:+55711631 Msa1164170:CDS
GAGCGTAGGATATGAAGTAA+GGG 0.603974 7_4:+55709921 Msa1164170:five_prime_UTR
AGGCTGTCAATCAACTTGGT+GGG 0.604087 7_4:+55711682 Msa1164170:CDS
TTTGGTCTATAGCCAAAAGA+AGG 0.606537 7_4:+55709945 Msa1164170:five_prime_UTR
GTTACGAAACACTAACCAGC+GGG 0.610725 7_4:-55709871 None:intergenic
GCTTCACGAGGCATTTGTGG+AGG 0.611503 7_4:+55711662 Msa1164170:CDS
GTGGAGGCTGTCAATCAACT+TGG 0.611778 7_4:+55711678 Msa1164170:CDS
GAGCTTCAGCACACCCTTAG+GGG 0.611866 7_4:-55711805 None:intergenic
ATTTCGCTTAGAAAACTCCT+CGG 0.613155 7_4:-55711276 None:intergenic
GTTGATGTTGTAGAAGGTAC+CGG 0.613506 7_4:-55711128 None:intergenic
TTACGTTACAAAATATCTAA+CGG 0.616105 7_4:-55709836 None:intergenic
ATTGAACACAACAGGACATG+AGG 0.618565 7_4:-55716376 None:intergenic
ACTAGAATCTCATCCTAACC+AGG 0.620336 7_4:-55716481 None:intergenic
GGGAGTGGAACGGTGACGAA+CGG 0.621066 7_4:-55709980 None:intergenic
CACATCGAAATTTAGGTCGT+AGG 0.621749 7_4:-55716560 None:intergenic
CTATCTGGAGAAAATCATGT+TGG 0.628306 7_4:+55711576 Msa1164170:CDS
CACGCGCTTGAATGGAGCGT+AGG 0.631061 7_4:+55709907 Msa1164170:five_prime_UTR
TAAGGTGTTGAAGAATGTCA+TGG 0.631467 7_4:-55716445 None:intergenic
TATAGACCAGAGTCATCTGA+AGG 0.642332 7_4:+55711974 Msa1164170:CDS
TTGGATTTGAGGGAGTGGAA+CGG 0.642643 7_4:-55709990 None:intergenic
GTGTCAGAAGACACTCCAGA+TGG 0.648683 7_4:-55716010 None:intergenic
CAGCGAGCTTTCCTCAACCG+TGG 0.657234 7_4:-55716119 None:intergenic
GCTGATTCAGAAAGATCACA+AGG 0.657414 7_4:-55716257 None:intergenic
GATAATAACCAAGTAGAGAG+CGG 0.662017 7_4:+55711233 Msa1164170:CDS
ATGGACTCCTGAGCTTCACG+AGG 0.664112 7_4:+55711650 Msa1164170:CDS
AGCTCTACGACTGCAGATGG+AGG 0.664727 7_4:+55714182 Msa1164170:CDS
CTACGACCTAAATTTCGATG+TGG 0.670335 7_4:+55716561 Msa1164170:three_prime_UTR
GCTTCTCAAACATCATCTGG+AGG 0.671425 7_4:-55715934 None:intergenic
AAGCGCGTGATAGATACTCT+CGG 0.679624 7_4:-55709893 None:intergenic
GAATTGAAAGTATCGTCACC+GGG 0.687792 7_4:-55710026 None:intergenic
TCGCTTAGAAAACTCCTCGG+TGG 0.696184 7_4:-55711273 None:intergenic
CAGTTGCGAATAGAAGAGCA+AGG 0.699827 7_4:+55715905 Msa1164170:CDS
GCTGCGAATCAGAAAATCTG+GGG 0.701278 7_4:-55710878 None:intergenic
CTGCAATATTATGGCCACCG+AGG 0.705670 7_4:+55711259 Msa1164170:CDS
GAGACGAAATATCTTCAATG+GGG 0.720068 7_4:-55712757 None:intergenic
TCAAGCTAATGGTAGTACCA+CGG 0.727330 7_4:+55716102 Msa1164170:CDS
GGTTACGAAACACTAACCAG+CGG 0.745084 7_4:-55709872 None:intergenic
AAGATCGTTAGAATATCCAG+GGG 0.749204 7_4:-55710994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCGTTTTTTAATAAAAAAA+CGG + chr7_4:55714668-55714687 Msa1164170:intron 10.0%
!! TTGTTAATTGAAAAAGATAA+AGG - chr7_4:55710724-55710743 None:intergenic 15.0%
!!! TCTTTTTCAATTAACAATTT+AGG + chr7_4:55710727-55710746 Msa1164170:intron 15.0%
!! AATTTATTTAAGAAACATGT+TGG + chr7_4:55711454-55711473 Msa1164170:intron 15.0%
!! ATTTATTTAAGAAACATGTT+GGG + chr7_4:55711455-55711474 Msa1164170:intron 15.0%
!! TATGTAAAAAAGAATTTGAA+TGG + chr7_4:55712234-55712253 Msa1164170:intron 15.0%
!! TGTAATTAATTACACAAATA+AGG - chr7_4:55712684-55712703 None:intergenic 15.0%
!!! TAAGATTTTCTATTTTCTTT+CGG - chr7_4:55713512-55713531 None:intergenic 15.0%
!! AACAGATAAACAAAAAATTA+TGG + chr7_4:55713850-55713869 Msa1164170:intron 15.0%
!! ACAGATAAACAAAAAATTAT+GGG + chr7_4:55713851-55713870 Msa1164170:intron 15.0%
!! ATTTATCATCTATAACTTAA+TGG + chr7_4:55714360-55714379 Msa1164170:intron 15.0%
!!! TGAATAATCGTTTTTTTTAA+TGG + chr7_4:55714391-55714410 Msa1164170:intron 15.0%
!!! TCGTTTTTTAATAAAAAAAC+GGG + chr7_4:55714669-55714688 Msa1164170:intron 15.0%
!! TTACGTTACAAAATATCTAA+CGG - chr7_4:55709839-55709858 None:intergenic 20.0%
!!! TTCATTCGTTATTTGTTTTT+TGG + chr7_4:55710167-55710186 Msa1164170:intron 20.0%
!!! ACAAATTAATTTGCTGAATT+AGG - chr7_4:55710203-55710222 None:intergenic 20.0%
!!! TTTATATTTTGCATGTTGTT+AGG + chr7_4:55710263-55710282 Msa1164170:intron 20.0%
!! ACGTCATAAAAATGAAAAAA+TGG - chr7_4:55710405-55710424 None:intergenic 20.0%
!!! TCATATAGTTTTTACTTTTG+TGG + chr7_4:55710463-55710482 Msa1164170:intron 20.0%
!! TTAACAATTTAGGAAAGTAA+TGG + chr7_4:55710737-55710756 Msa1164170:intron 20.0%
!! AAAGAATTAAGATCTTACTT+TGG - chr7_4:55711737-55711756 None:intergenic 20.0%
!! AAGCACATAAAAAATAATTG+AGG - chr7_4:55711769-55711788 None:intergenic 20.0%
!! TATTTGAATATAAGCATTCA+AGG - chr7_4:55711915-55711934 None:intergenic 20.0%
!!! CAAATTTTTGCATATTAGTT+AGG + chr7_4:55712038-55712057 Msa1164170:intron 20.0%
!! ACCAAAATATTGTATACAAA+GGG - chr7_4:55712302-55712321 None:intergenic 20.0%
!! AACCAAAATATTGTATACAA+AGG - chr7_4:55712303-55712322 None:intergenic 20.0%
!! CTAATAAAAGATTAGACTAA+AGG - chr7_4:55712540-55712559 None:intergenic 20.0%
!! AACAATACATAACAAAATAG+AGG - chr7_4:55712829-55712848 None:intergenic 20.0%
!! TTATGTATTGTTGTATTTCT+AGG + chr7_4:55712837-55712856 Msa1164170:intron 20.0%
!!! TCTATATTTGACTTCTTTAA+AGG + chr7_4:55712941-55712960 Msa1164170:intron 20.0%
!!! CTATATTTGACTTCTTTAAA+GGG + chr7_4:55712942-55712961 Msa1164170:intron 20.0%
!!! TATATTTGACTTCTTTAAAG+GGG + chr7_4:55712943-55712962 Msa1164170:intron 20.0%
!! AATCTAATCAATCAATCTAA+AGG + chr7_4:55713231-55713250 Msa1164170:intron 20.0%
!! TCTATGTCTCTATTTATAAA+AGG + chr7_4:55713684-55713703 Msa1164170:intron 20.0%
!! ATGATATATGCATAATTACT+AGG - chr7_4:55713812-55713831 None:intergenic 20.0%
!!! TGATAAATTTCTAAAAGTCA+TGG - chr7_4:55714348-55714367 None:intergenic 20.0%
!! TGTTAGTATGTTAATTGTTA+TGG + chr7_4:55714418-55714437 Msa1164170:intron 20.0%
!!! AGTGTGAATAAAATACTTTT+AGG + chr7_4:55714533-55714552 Msa1164170:intron 20.0%
!!! AAATACTTTTAGGATTTACT+CGG + chr7_4:55714543-55714562 Msa1164170:intron 20.0%
!! AAAGGAAGTAGAATAATATT+CGG + chr7_4:55714637-55714656 Msa1164170:intron 20.0%
!! CTATAAAAGCAATAAATAAG+TGG + chr7_4:55714776-55714795 Msa1164170:intron 20.0%
!!! TTTTAGAAGTAGTAAGATTT+TGG - chr7_4:55715100-55715119 None:intergenic 20.0%
!!! AAATAAAATGTCACTTAATC+TGG + chr7_4:55715260-55715279 Msa1164170:intron 20.0%
!!! AATAAAATGTCACTTAATCT+GGG + chr7_4:55715261-55715280 Msa1164170:intron 20.0%
!! TTGACAAAATGTTATCTTTA+TGG - chr7_4:55715499-55715518 None:intergenic 20.0%
!! GGGAAAAAAGAAAATATTTA+AGG - chr7_4:55715633-55715652 None:intergenic 20.0%
!! CTACATTTCAAACAATATTA+CGG - chr7_4:55715730-55715749 None:intergenic 20.0%
!!! TTTGAGTTATAATTTTAGCA+AGG + chr7_4:55716308-55716327 Msa1164170:three_prime_UTR 20.0%
!! CTGTATCAAAATAAAAAGTA+AGG + chr7_4:55716619-55716638 Msa1164170:three_prime_UTR 20.0%
! AAGAATCATCAACAAAAAAG+GGG - chr7_4:55710141-55710160 None:intergenic 25.0%
! CAAGAATCATCAACAAAAAA+GGG - chr7_4:55710142-55710161 None:intergenic 25.0%
! ACAAGAATCATCAACAAAAA+AGG - chr7_4:55710143-55710162 None:intergenic 25.0%
!!! ATTAATTTGCTGAATTAGGT+CGG - chr7_4:55710199-55710218 None:intergenic 25.0%
!!! TATAGTTTTTACTTTTGTGG+CGG + chr7_4:55710466-55710485 Msa1164170:intron 25.0%
! TTATTTGAAGAATACGGTAA+TGG - chr7_4:55711104-55711123 None:intergenic 25.0%
! TTACCGTATTCTTCAAATAA+TGG + chr7_4:55711104-55711123 Msa1164170:CDS 25.0%
! TACTTGGTTATTATCAATTG+AGG - chr7_4:55711228-55711247 None:intergenic 25.0%
!! AAAGTCATCTTCACAATTTT+CGG + chr7_4:55711515-55711534 Msa1164170:CDS 25.0%
! GGTAAAAATTTAATAGCCAA+TGG - chr7_4:55712080-55712099 None:intergenic 25.0%
! AATTGCCTTTATTAAGTAGA+TGG + chr7_4:55712117-55712136 Msa1164170:intron 25.0%
!! TTGTCAGATTTTCTGTTAAT+TGG + chr7_4:55712143-55712162 Msa1164170:intron 25.0%
! AAGTCTTAAATTGTTGTCTA+TGG + chr7_4:55712269-55712288 Msa1164170:intron 25.0%
!! GGAAATCATTTTCTCAAAAA+TGG - chr7_4:55712389-55712408 None:intergenic 25.0%
!! CTTTTATTAGATTTGCGTAT+TGG + chr7_4:55712550-55712569 Msa1164170:intron 25.0%
! CAATAAAAAAGTTCACTGTT+AGG - chr7_4:55712589-55712608 None:intergenic 25.0%
!!! TACAATTTGTTGAATACTGT+TGG + chr7_4:55712709-55712728 Msa1164170:intron 25.0%
!! CAATTTCTTAGACAACATTT+TGG + chr7_4:55712873-55712892 Msa1164170:intron 25.0%
!! ATATTTGACTTCTTTAAAGG+GGG + chr7_4:55712944-55712963 Msa1164170:intron 25.0%
! ATATGCATGTGCATTTAAAA+CGG + chr7_4:55713035-55713054 Msa1164170:intron 25.0%
! ACAGTTCATTGGAAAAAAAA+TGG - chr7_4:55713081-55713100 None:intergenic 25.0%
!!! ATATTTGGTTTTGTTGTAGT+GGG + chr7_4:55713125-55713144 Msa1164170:intron 25.0%
! GAACAGCATATAAAACATTT+AGG - chr7_4:55713191-55713210 None:intergenic 25.0%
! TGATTGATTAGATTAGATGT+TGG - chr7_4:55713225-55713244 None:intergenic 25.0%
! ATATTACTAGCTAGGATAAT+TGG - chr7_4:55713359-55713378 None:intergenic 25.0%
!!! ATTATGAAAGATACTGATTC+AGG + chr7_4:55713474-55713493 Msa1164170:intron 25.0%
! TATCATCTGTTAATCTGATA+AGG + chr7_4:55713826-55713845 Msa1164170:intron 25.0%
!! TATTTTATTCACACTAGTTG+GGG - chr7_4:55714528-55714547 None:intergenic 25.0%
!! GTATTTTATTCACACTAGTT+GGG - chr7_4:55714529-55714548 None:intergenic 25.0%
!! AGTATTTTATTCACACTAGT+TGG - chr7_4:55714530-55714549 None:intergenic 25.0%
! GTGAATAAATTCAAGGAAAA+TGG + chr7_4:55714598-55714617 Msa1164170:intron 25.0%
! TATTATTCTACTTCCTTTAC+AGG - chr7_4:55714635-55714654 None:intergenic 25.0%
! AAAAGCAATAAATAAGTGGA+TGG + chr7_4:55714780-55714799 Msa1164170:intron 25.0%
! TGTAAATTGACTATGCATTT+AGG - chr7_4:55714845-55714864 None:intergenic 25.0%
! GTCAATTTACATAATAGAAC+TGG + chr7_4:55714854-55714873 Msa1164170:intron 25.0%
! GAAACTATATAGATAAAGTG+AGG - chr7_4:55714951-55714970 None:intergenic 25.0%
!! GAATATGATATTTGGTGAAA+AGG - chr7_4:55714980-55714999 None:intergenic 25.0%
! GGTTATGAGAATATGATATT+TGG - chr7_4:55714988-55715007 None:intergenic 25.0%
! TGTATAATTGTAGATACTTG+TGG + chr7_4:55715367-55715386 Msa1164170:intron 25.0%
!! TCTTTTACAAATCAAGGAAT+GGG - chr7_4:55715563-55715582 None:intergenic 25.0%
!! TCATTCTCTTTTACAAATCA+AGG - chr7_4:55715569-55715588 None:intergenic 25.0%
! CAAAAAAAAATGTCTTGAAG+AGG - chr7_4:55715597-55715616 None:intergenic 25.0%
!!! CATTTTTGGATAAACTGATT+AGG + chr7_4:55715668-55715687 Msa1164170:intron 25.0%
! TCTTTGAATCTAACACAAAA+GGG - chr7_4:55715879-55715898 None:intergenic 25.0%
! TTCTTTGAATCTAACACAAA+AGG - chr7_4:55715880-55715899 None:intergenic 25.0%
! CTGACTTAAAACTAAATGAA+AGG - chr7_4:55716419-55716438 None:intergenic 25.0%
! GATATTGTCCTAATAAGATA+AGG - chr7_4:55716530-55716549 None:intergenic 25.0%
!!! TTGTTTTTTCTCACCAATTA+TGG + chr7_4:55716661-55716680 Msa1164170:three_prime_UTR 25.0%
! GAACATTTTTCCTAATCATG+TGG + chr7_4:55709788-55709807 Msa1164170:five_prime_UTR 30.0%
CTGAAAAAGTAGAATTTCAC+GGG - chr7_4:55710060-55710079 None:intergenic 30.0%
CCTGAAAAAGTAGAATTTCA+CGG - chr7_4:55710061-55710080 None:intergenic 30.0%
ACATGAAGAAATCGATTATG+AGG - chr7_4:55710102-55710121 None:intergenic 30.0%
ATCATGTGAAGATTTGATCA+CGG + chr7_4:55710289-55710308 Msa1164170:intron 30.0%
!! ATAGTTTTTACTTTTGTGGC+GGG + chr7_4:55710467-55710486 Msa1164170:intron 30.0%
! AGATCTTTTTCCACATAAGT+CGG - chr7_4:55710903-55710922 None:intergenic 30.0%
! TCAAGTCATATAAGTTCTAG+TGG + chr7_4:55710945-55710964 Msa1164170:CDS 30.0%
GGTCCATTATTTGAAGAATA+CGG - chr7_4:55711110-55711129 None:intergenic 30.0%
!! GTATTCTTCAAATAATGGAC+CGG + chr7_4:55711109-55711128 Msa1164170:CDS 30.0%
! TAATGTGTTGATGTTGTAGA+AGG - chr7_4:55711137-55711156 None:intergenic 30.0%
ACATCAACACATTATTCCAA+TGG + chr7_4:55711143-55711162 Msa1164170:CDS 30.0%
! AGTTTTCTAAGCGAAATGAT+TGG + chr7_4:55711282-55711301 Msa1164170:CDS 30.0%
! ACGATACTTTGACTTCTAAT+TGG + chr7_4:55711336-55711355 Msa1164170:CDS 30.0%
GTAATGAAAACCTTAACCTT+TGG - chr7_4:55711398-55711417 None:intergenic 30.0%
!! GGAACTCATTTTGTTTCTTT+AGG + chr7_4:55711476-55711495 Msa1164170:intron 30.0%
!! ACTCATTTTGTTTCTTTAGG+CGG + chr7_4:55711479-55711498 Msa1164170:intron 30.0%
! TTGTGAAGATGACTTTGAAA+TGG - chr7_4:55711511-55711530 None:intergenic 30.0%
! TTTTATGTGCTTCTTTCTAC+AGG + chr7_4:55711777-55711796 Msa1164170:intron 30.0%
! GTATTATAATGCCTTTTGCA+TGG + chr7_4:55712014-55712033 Msa1164170:intron 30.0%
CAAAAATTTGTCCATGCAAA+AGG - chr7_4:55712028-55712047 None:intergenic 30.0%
TTGCATATTAGTTAGGACAT+AGG + chr7_4:55712045-55712064 Msa1164170:intron 30.0%
AATTCTACAGCAAACTTTAC+AGG - chr7_4:55712101-55712120 None:intergenic 30.0%
AAGAGCCATCTACTTAATAA+AGG - chr7_4:55712125-55712144 None:intergenic 30.0%
AAATTCCAAGTTTCTCGATA+TGG - chr7_4:55712183-55712202 None:intergenic 30.0%
! GCCCTTTGTATACAATATTT+TGG + chr7_4:55712298-55712317 Msa1164170:intron 30.0%
ACGCAGTAGTTAAAATTCAA+TGG - chr7_4:55712410-55712429 None:intergenic 30.0%
TTAACTACTGCGTAATTAGT+TGG + chr7_4:55712417-55712436 Msa1164170:intron 30.0%
TAACTACTGCGTAATTAGTT+GGG + chr7_4:55712418-55712437 Msa1164170:intron 30.0%
!!! CAGTGAACTTTTTTATTGAC+CGG + chr7_4:55712591-55712610 Msa1164170:intron 30.0%
!!! AGTGAACTTTTTTATTGACC+GGG + chr7_4:55712592-55712611 Msa1164170:intron 30.0%
GAGCATTACTCTATATTTCA+AGG - chr7_4:55712662-55712681 None:intergenic 30.0%
AGAGACGAAATATCTTCAAT+GGG - chr7_4:55712761-55712780 None:intergenic 30.0%
TAGAGACGAAATATCTTCAA+TGG - chr7_4:55712762-55712781 None:intergenic 30.0%
GCAAAGTTATAACAGTTCAT+TGG - chr7_4:55713092-55713111 None:intergenic 30.0%
TGTTATAACTTTGCAACAGT+AGG + chr7_4:55713098-55713117 Msa1164170:intron 30.0%
!!! CATATTTGGTTTTGTTGTAG+TGG + chr7_4:55713124-55713143 Msa1164170:intron 30.0%
! ATTAGATGTTGGTAAAAGCT+CGG - chr7_4:55713214-55713233 None:intergenic 30.0%
TTTCCATTCATCATTGATGT+CGG + chr7_4:55713298-55713317 Msa1164170:intron 30.0%
!!! GGTCATTTGTTTTGTTTGAA+GGG + chr7_4:55713319-55713338 Msa1164170:intron 30.0%
CTAGAATGATATTACTAGCT+AGG - chr7_4:55713367-55713386 None:intergenic 30.0%
TATGCATAATTACTAGGAAC+AGG - chr7_4:55713806-55713825 None:intergenic 30.0%
!! ATTATGGGTGTTTTCAAGAT+TGG + chr7_4:55713866-55713885 Msa1164170:intron 30.0%
GAGTAAAATGCTAGAAAAGT+AGG + chr7_4:55713896-55713915 Msa1164170:intron 30.0%
! TATGTCTCTATGTAAGCTTT+TGG + chr7_4:55714023-55714042 Msa1164170:intron 30.0%
GAGCTTAGTGAATAAATTCA+AGG + chr7_4:55714591-55714610 Msa1164170:intron 30.0%
TTAAAACTCAATGATCAAGC+TGG - chr7_4:55715057-55715076 None:intergenic 30.0%
! TTTAACCTCCTTTTCAAACT+AGG + chr7_4:55715072-55715091 Msa1164170:intron 30.0%
! TTTTGGATCCTAGTTTGAAA+AGG - chr7_4:55715083-55715102 None:intergenic 30.0%
TAATGCACATTTCGTTCATT+TGG + chr7_4:55715198-55715217 Msa1164170:intron 30.0%
AATGCACATTTCGTTCATTT+GGG + chr7_4:55715199-55715218 Msa1164170:intron 30.0%
! CTCTTTTACAAATCAAGGAA+TGG - chr7_4:55715564-55715583 None:intergenic 30.0%
! TATTTTCTTTTTTCCCCTTC+TGG + chr7_4:55715637-55715656 Msa1164170:intron 30.0%
! AGGATTTGTTTGTTTCTTCT+TGG + chr7_4:55715688-55715707 Msa1164170:intron 30.0%
! GGATTTGTTTGTTTCTTCTT+GGG + chr7_4:55715689-55715708 Msa1164170:intron 30.0%
!! GAAATGTAGCTTTATGCATA+TGG + chr7_4:55715741-55715760 Msa1164170:intron 30.0%
CTTTATGCATATGGCATTTA+GGG + chr7_4:55715750-55715769 Msa1164170:intron 30.0%
CTATATCAGATCATCTGAAA+AGG - chr7_4:55715849-55715868 None:intergenic 30.0%
TTTGAATCTAACACAAAAGG+GGG - chr7_4:55715877-55715896 None:intergenic 30.0%
CTTTGAATCTAACACAAAAG+GGG - chr7_4:55715878-55715897 None:intergenic 30.0%
ATGAATCAGTATTGTGTTGT+CGG - chr7_4:55716289-55716308 None:intergenic 30.0%
CATAGAGCTCTATAACTTAA+CGG + chr7_4:55716350-55716369 Msa1164170:three_prime_UTR 30.0%
CTTCAACACCTTATCTTATT+TGG + chr7_4:55716455-55716474 Msa1164170:three_prime_UTR 30.0%
TACATACCACATCGAAATTT+AGG - chr7_4:55716570-55716589 None:intergenic 30.0%
TCTATTTGCACCACATGATT+AGG - chr7_4:55709801-55709820 None:intergenic 35.0%
AGGATATGAAGTAAGGGATT+TGG + chr7_4:55709927-55709946 Msa1164170:five_prime_UTR 35.0%
TTTGGTCTATAGCCAAAAGA+AGG + chr7_4:55709945-55709964 Msa1164170:five_prime_UTR 35.0%
!! AGAATTGAAAGTATCGTCAC+CGG - chr7_4:55710030-55710049 None:intergenic 35.0%
!!! CCGTGAAATTCTACTTTTTC+AGG + chr7_4:55710058-55710077 Msa1164170:five_prime_UTR 35.0%
! ACAAGTGAGCTTCTTTCTTT+TGG + chr7_4:55710518-55710537 Msa1164170:intron 35.0%
! TAGATTGATGACAACTTGTC+TGG + chr7_4:55710589-55710608 Msa1164170:intron 35.0%
! CGACATTTGTAGTATTTTGC+TGG + chr7_4:55710634-55710653 Msa1164170:intron 35.0%
GATTCACATTATCTCTCAGA+TGG - chr7_4:55710669-55710688 None:intergenic 35.0%
GATCTTTCAATTGAGAAAGC+AGG - chr7_4:55710771-55710790 None:intergenic 35.0%
AAGATCGTTAGAATATCCAG+GGG - chr7_4:55710997-55711016 None:intergenic 35.0%
GAAGATCGTTAGAATATCCA+GGG - chr7_4:55710998-55711017 None:intergenic 35.0%
TGAAGATCGTTAGAATATCC+AGG - chr7_4:55710999-55711018 None:intergenic 35.0%
! GTGTTTTTCATGAGGTGAAA+GGG - chr7_4:55711030-55711049 None:intergenic 35.0%
! AGTGTTTTTCATGAGGTGAA+AGG - chr7_4:55711031-55711050 None:intergenic 35.0%
!!! CTTCTAGAGTGTTTTTCATG+AGG - chr7_4:55711038-55711057 None:intergenic 35.0%
AAATCAAGAAAACTAGGCAG+GGG - chr7_4:55711194-55711213 None:intergenic 35.0%
GAAATCAAGAAAACTAGGCA+GGG - chr7_4:55711195-55711214 None:intergenic 35.0%
AGAAATCAAGAAAACTAGGC+AGG - chr7_4:55711196-55711215 None:intergenic 35.0%
GCAGAGAAATCAAGAAAACT+AGG - chr7_4:55711200-55711219 None:intergenic 35.0%
GATAATAACCAAGTAGAGAG+CGG + chr7_4:55711233-55711252 Msa1164170:CDS 35.0%
ATTTCGCTTAGAAAACTCCT+CGG - chr7_4:55711279-55711298 None:intergenic 35.0%
TATTCAAGATCTTGAGCCAA+AGG + chr7_4:55711379-55711398 Msa1164170:CDS 35.0%
CTATCTGGAGAAAATCATGT+TGG + chr7_4:55711576-55711595 Msa1164170:CDS 35.0%
TCATGTTAAAAGCCACTTAC+AGG + chr7_4:55711854-55711873 Msa1164170:CDS 35.0%
AAATGGTACATACCTGTAAG+TGG - chr7_4:55711869-55711888 None:intergenic 35.0%
ACCATTTGCTTTATCTTCCA+AGG + chr7_4:55711882-55711901 Msa1164170:intron 35.0%
TCCTTGGAAGATAAAGCAAA+TGG - chr7_4:55711886-55711905 None:intergenic 35.0%
TCAACGAAATGCAGAAATAC+AGG + chr7_4:55711942-55711961 Msa1164170:intron 35.0%
ATTAGTTAGGACATAGGATG+AGG + chr7_4:55712051-55712070 Msa1164170:intron 35.0%
AAATGGTTTACCCTTACATG+AGG - chr7_4:55712372-55712391 None:intergenic 35.0%
CAAAACTCTTTGACTCTCTT+CGG - chr7_4:55712480-55712499 None:intergenic 35.0%
AACATCAAATGCACAAAACC+CGG - chr7_4:55712613-55712632 None:intergenic 35.0%
! ATTTGTTGAATACTGTTGGC+AGG + chr7_4:55712713-55712732 Msa1164170:intron 35.0%
GAGACGAAATATCTTCAATG+GGG - chr7_4:55712760-55712779 None:intergenic 35.0%
GCAACAGTAGGTAACATATT+TGG + chr7_4:55713110-55713129 Msa1164170:intron 35.0%
! TTAGATGTTGGTAAAAGCTC+GGG - chr7_4:55713213-55713232 None:intergenic 35.0%
!!! GAGAATGTAGCTTTTGAAAC+TGG + chr7_4:55713259-55713278 Msa1164170:intron 35.0%
!!! CGGTCATTTGTTTTGTTTGA+AGG + chr7_4:55713318-55713337 Msa1164170:intron 35.0%
CAGCAGATGAGATAACTTTA+CGG - chr7_4:55713452-55713471 None:intergenic 35.0%
ATTCAGAGTTAGAAGATGGT+GGG - chr7_4:55713535-55713554 None:intergenic 35.0%
! ACTGATTCAGAGTTAGAAGA+TGG - chr7_4:55713539-55713558 None:intergenic 35.0%
ATCTTCTAACTCTGAATCAG+TGG + chr7_4:55713538-55713557 Msa1164170:intron 35.0%
TCTTCTAACTCTGAATCAGT+GGG + chr7_4:55713539-55713558 Msa1164170:intron 35.0%
AGAAGAAAAACGTCTTACAG+TGG + chr7_4:55713578-55713597 Msa1164170:intron 35.0%
! CTTACAGTGGTATCTTTTCT+AGG + chr7_4:55713591-55713610 Msa1164170:intron 35.0%
! TTTTGTTCTTGACACAGTTC+AGG - chr7_4:55713627-55713646 None:intergenic 35.0%
GAGACATAGAATGTAAGAGA+AGG - chr7_4:55713674-55713693 None:intergenic 35.0%
GTCTAACTAATTCCTAGTTG+GGG + chr7_4:55713780-55713799 Msa1164170:intron 35.0%
! CTTGCTGTAGACTTTATTGA+TGG - chr7_4:55713935-55713954 None:intergenic 35.0%
CATCAATAAAGTCTACAGCA+AGG + chr7_4:55713933-55713952 Msa1164170:intron 35.0%
!! CAGCAAGGTTCTAAGTTATA+TGG + chr7_4:55713948-55713967 Msa1164170:intron 35.0%
!! GGTTCTAAGTTATATGGATC+AGG + chr7_4:55713954-55713973 Msa1164170:intron 35.0%
CTAAGTTATATGGATCAGGA+AGG + chr7_4:55713958-55713977 Msa1164170:intron 35.0%
! GTTGTTGTGTGTAAGCTTTT+TGG + chr7_4:55714068-55714087 Msa1164170:intron 35.0%
ACACAGACATGAATAGTGAT+TGG + chr7_4:55714110-55714129 Msa1164170:intron 35.0%
CTCACATTAAGTGGTGTTTA+AGG + chr7_4:55714738-55714757 Msa1164170:intron 35.0%
! TCATTGCTTGTTGAAGCAAA+TGG - chr7_4:55715009-55715028 None:intergenic 35.0%
ATGCACATTTCGTTCATTTG+GGG + chr7_4:55715200-55715219 Msa1164170:intron 35.0%
AAAATGTCCTGATTCCAGAA+GGG - chr7_4:55715654-55715673 None:intergenic 35.0%
AAAAATGTCCTGATTCCAGA+AGG - chr7_4:55715655-55715674 None:intergenic 35.0%
!!! TTCTGGAATCAGGACATTTT+TGG + chr7_4:55715654-55715673 Msa1164170:intron 35.0%
GCTTTATGCATATGGCATTT+AGG + chr7_4:55715749-55715768 Msa1164170:intron 35.0%
! AAAGGCATGACAACTATAAG+AGG - chr7_4:55715831-55715850 None:intergenic 35.0%
TTGAATCTAACACAAAAGGG+GGG - chr7_4:55715876-55715895 None:intergenic 35.0%
ATTGCTTCTCAAACATCATC+TGG - chr7_4:55715940-55715959 None:intergenic 35.0%
TTTGAGAAGCAATGCAAATC+TGG + chr7_4:55715947-55715966 Msa1164170:CDS 35.0%
CTCTCCTACCAAAAATGAAT+TGG + chr7_4:55716042-55716061 Msa1164170:CDS 35.0%
!!! GCTTCCAATTCATTTTTGGT+AGG - chr7_4:55716049-55716068 None:intergenic 35.0%
! GGATGCTTCCAATTCATTTT+TGG - chr7_4:55716053-55716072 None:intergenic 35.0%
!! TGAATTGGAAGCATCCAAAA+TGG + chr7_4:55716057-55716076 Msa1164170:CDS 35.0%
!! CTTAGAAGCTTGTTGAGATT+TGG - chr7_4:55716170-55716189 None:intergenic 35.0%
CAAATCTCAACAAGCTTCTA+AGG + chr7_4:55716168-55716187 Msa1164170:CDS 35.0%
!! TAAGGTGTTGAAGAATGTCA+TGG - chr7_4:55716448-55716467 None:intergenic 35.0%
CCAGGATACCAAATAAGATA+AGG - chr7_4:55716466-55716485 None:intergenic 35.0%
! CCTTATCTTATTTGGTATCC+TGG + chr7_4:55716463-55716482 Msa1164170:three_prime_UTR 35.0%
! TCTTATTTGGTATCCTGGTT+AGG + chr7_4:55716468-55716487 Msa1164170:three_prime_UTR 35.0%
TGGCTTCACCTTATCTTATT+AGG + chr7_4:55716519-55716538 Msa1164170:three_prime_UTR 35.0%
GAGCGTAGGATATGAAGTAA+GGG + chr7_4:55709921-55709940 Msa1164170:five_prime_UTR 40.0%
GGCAAGTGAATTGGATTTGA+GGG - chr7_4:55710003-55710022 None:intergenic 40.0%
!! GAATTGAAAGTATCGTCACC+GGG - chr7_4:55710029-55710048 None:intergenic 40.0%
TGATGACAACTTGTCTGGTT+TGG + chr7_4:55710594-55710613 Msa1164170:five_prime_UTR 40.0%
! GATGACAACTTGTCTGGTTT+GGG + chr7_4:55710595-55710614 Msa1164170:five_prime_UTR 40.0%
CCCTATGTTATTCAGTTGCT+GGG - chr7_4:55710799-55710818 None:intergenic 40.0%
CCCAGCAACTGAATAACATA+GGG + chr7_4:55710796-55710815 Msa1164170:CDS 40.0%
TCCCTATGTTATTCAGTTGC+TGG - chr7_4:55710800-55710819 None:intergenic 40.0%
CTGAATAACATAGGGATGTC+TGG + chr7_4:55710804-55710823 Msa1164170:CDS 40.0%
! ATAAGTTCTAGTGGAGCAGT+TGG + chr7_4:55710954-55710973 Msa1164170:CDS 40.0%
! TAAGTTCTAGTGGAGCAGTT+GGG + chr7_4:55710955-55710974 Msa1164170:CDS 40.0%
! CATATGTTTTCATCTTCCCC+TGG + chr7_4:55710978-55710997 Msa1164170:CDS 40.0%
TTCGCAGTCATTGAGTAACA+TGG + chr7_4:55711070-55711089 Msa1164170:CDS 40.0%
GTCATTGAGTAACATGGCTT+CGG + chr7_4:55711076-55711095 Msa1164170:CDS 40.0%
! GTTGATGTTGTAGAAGGTAC+CGG - chr7_4:55711131-55711150 None:intergenic 40.0%
TTCTAAGCGAAATGATTGGC+AGG + chr7_4:55711286-55711305 Msa1164170:CDS 40.0%
! TATCGTCATCACTGATTAGC+TGG - chr7_4:55711322-55711341 None:intergenic 40.0%
AGATCTTGAGCCAAAGGTTA+AGG + chr7_4:55711385-55711404 Msa1164170:CDS 40.0%
!! CATTTTGTTTCTTTAGGCGG+TGG + chr7_4:55711482-55711501 Msa1164170:intron 40.0%
! TCATCTTCACAATTTTCGGC+AGG + chr7_4:55711519-55711538 Msa1164170:CDS 40.0%
! TGATTTTCTCCAGATAGAGC+TGG - chr7_4:55711573-55711592 None:intergenic 40.0%
CTGAAGCTCATGAAAGTTGA+AGG + chr7_4:55711819-55711838 Msa1164170:CDS 40.0%
GCATTCAAGGAAACAATCCT+TGG - chr7_4:55711902-55711921 None:intergenic 40.0%
TATAGACCAGAGTCATCTGA+AGG + chr7_4:55711974-55711993 Msa1164170:CDS 40.0%
TATGTACCTTCAGATGACTC+TGG - chr7_4:55711983-55712002 None:intergenic 40.0%
TTGCTCCATATCGAGAAACT+TGG + chr7_4:55712175-55712194 Msa1164170:intron 40.0%
! CGAAGAGAGTCAAAGAGTTT+TGG + chr7_4:55712478-55712497 Msa1164170:intron 40.0%
TAAATTGCACCCCTCTTTAG+AGG + chr7_4:55713157-55713176 Msa1164170:intron 40.0%
! GAAATGACTCCTCTAAAGAG+GGG - chr7_4:55713169-55713188 None:intergenic 40.0%
! GGAAATGACTCCTCTAAAGA+GGG - chr7_4:55713170-55713189 None:intergenic 40.0%
! AGGAAATGACTCCTCTAAAG+AGG - chr7_4:55713171-55713190 None:intergenic 40.0%
!!! AGCTTTTGAAACTGGACATG+TGG + chr7_4:55713267-55713286 Msa1164170:intron 40.0%
TGACCGACATCAATGATGAA+TGG - chr7_4:55713304-55713323 None:intergenic 40.0%
TGTTGTGTGTGTTAGTGACT+TGG - chr7_4:55713399-55713418 None:intergenic 40.0%
CGTAAAGTTATCTCATCTGC+TGG + chr7_4:55713450-55713469 Msa1164170:intron 40.0%
GATTCAGAGTTAGAAGATGG+TGG - chr7_4:55713536-55713555 None:intergenic 40.0%
! GACGTTTTTCTTCTTGACCA+TGG - chr7_4:55713572-55713591 None:intergenic 40.0%
AACCATTGCATCATTGACAG+TGG + chr7_4:55714144-55714163 Msa1164170:intron 40.0%
TACCACTGTCAATGATGCAA+TGG - chr7_4:55714149-55714168 None:intergenic 40.0%
! TGACAGTGGTATTGAGATCA+CGG + chr7_4:55714158-55714177 Msa1164170:intron 40.0%
!!! TAGTTTTTTTCCTCCTTGCC+AGG + chr7_4:55714441-55714460 Msa1164170:intron 40.0%
TGAGTTAAGGGTTAAGGAGT+TGG - chr7_4:55714484-55714503 None:intergenic 40.0%
! ACGGTTTGAGTTAAGGGTTA+AGG - chr7_4:55714490-55714509 None:intergenic 40.0%
! GCTCAAACGGTTTGAGTTAA+GGG - chr7_4:55714496-55714515 None:intergenic 40.0%
! AGCTCAAACGGTTTGAGTTA+AGG - chr7_4:55714497-55714516 None:intergenic 40.0%
CTCGGATTATCTACTTCAAC+TGG + chr7_4:55714561-55714580 Msa1164170:intron 40.0%
! GGAATGAAACTAGCCTGTAA+AGG + chr7_4:55714619-55714638 Msa1164170:intron 40.0%
GTCTAAACACAGTGTCTTAG+TGG + chr7_4:55714697-55714716 Msa1164170:intron 40.0%
ACACCACTTAATGTGAGACA+GGG - chr7_4:55714735-55714754 None:intergenic 40.0%
AACACCACTTAATGTGAGAC+AGG - chr7_4:55714736-55714755 None:intergenic 40.0%
TGGATCCTAGTTTGAAAAGG+AGG - chr7_4:55715080-55715099 None:intergenic 40.0%
! TCTAAAATAGCGTGCTTTGC+TGG + chr7_4:55715113-55715132 Msa1164170:intron 40.0%
CTAAAATAGCGTGCTTTGCT+GGG + chr7_4:55715114-55715133 Msa1164170:intron 40.0%
TAAAATAGCGTGCTTTGCTG+GGG + chr7_4:55715115-55715134 Msa1164170:intron 40.0%
TGCACATTTCGTTCATTTGG+GGG + chr7_4:55715201-55715220 Msa1164170:intron 40.0%
!!! TTTTTTCCCCTTCTGGAATC+AGG + chr7_4:55715644-55715663 Msa1164170:intron 40.0%
AAATGTCCTGATTCCAGAAG+GGG - chr7_4:55715653-55715672 None:intergenic 40.0%
! GTTTGTTTCTTCTTGGGTCA+TGG + chr7_4:55715695-55715714 Msa1164170:intron 40.0%
TGAATCTAACACAAAAGGGG+GGG - chr7_4:55715875-55715894 None:intergenic 40.0%
! ATCTGGTGTTGAGCCATTTA+AGG + chr7_4:55715964-55715983 Msa1164170:CDS 40.0%
! GCTGATGATGATGCCTTAAA+TGG - chr7_4:55715980-55715999 None:intergenic 40.0%
TCAGCCATTGAAAATCCATC+TGG + chr7_4:55715995-55716014 Msa1164170:CDS 40.0%
!! CACTCCAGATGGATTTTCAA+TGG - chr7_4:55716002-55716021 None:intergenic 40.0%
TTTGGTAGGAGAGTCTTTCA+TGG - chr7_4:55716035-55716054 None:intergenic 40.0%
!! TGACTTGCAATGGTCCATTT+TGG - chr7_4:55716074-55716093 None:intergenic 40.0%
AAAATGGACCATTGCAAGTC+AGG + chr7_4:55716073-55716092 Msa1164170:CDS 40.0%
! GTACTACCATTAGCTTGATC+AGG - chr7_4:55716100-55716119 None:intergenic 40.0%
TCAAGCTAATGGTAGTACCA+CGG + chr7_4:55716102-55716121 Msa1164170:CDS 40.0%
!! AGAAGCTTGTTGAGATTTGG+AGG - chr7_4:55716167-55716186 None:intergenic 40.0%
! GCTGATTCAGAAAGATCACA+AGG - chr7_4:55716260-55716279 None:intergenic 40.0%
ATTGAACACAACAGGACATG+AGG - chr7_4:55716379-55716398 None:intergenic 40.0%
ATGTCCTGTTGTGTTCAATG+AGG + chr7_4:55716380-55716399 Msa1164170:three_prime_UTR 40.0%
TGTCCTGTTGTGTTCAATGA+GGG + chr7_4:55716381-55716400 Msa1164170:three_prime_UTR 40.0%
ACTAGAATCTCATCCTAACC+AGG - chr7_4:55716484-55716503 None:intergenic 40.0%
CTAGTGTACAGTGCAGATAA+TGG + chr7_4:55716499-55716518 Msa1164170:three_prime_UTR 40.0%
CACATCGAAATTTAGGTCGT+AGG - chr7_4:55716563-55716582 None:intergenic 40.0%
CTACGACCTAAATTTCGATG+TGG + chr7_4:55716561-55716580 Msa1164170:three_prime_UTR 40.0%
GTTACGAAACACTAACCAGC+GGG - chr7_4:55709874-55709893 None:intergenic 45.0%
GGTTACGAAACACTAACCAG+CGG - chr7_4:55709875-55709894 None:intergenic 45.0%
AAGCGCGTGATAGATACTCT+CGG - chr7_4:55709896-55709915 None:intergenic 45.0%
GTATCTATCACGCGCTTGAA+TGG + chr7_4:55709899-55709918 Msa1164170:five_prime_UTR 45.0%
GGAGCGTAGGATATGAAGTA+AGG + chr7_4:55709920-55709939 Msa1164170:five_prime_UTR 45.0%
! ATGCGCTTTGCACCTTCTTT+TGG - chr7_4:55709960-55709979 None:intergenic 45.0%
TTGGATTTGAGGGAGTGGAA+CGG - chr7_4:55709993-55710012 None:intergenic 45.0%
GTGAATTGGATTTGAGGGAG+TGG - chr7_4:55709998-55710017 None:intergenic 45.0%
CGGCAAGTGAATTGGATTTG+AGG - chr7_4:55710004-55710023 None:intergenic 45.0%
GCCCAGCAACTGAATAACAT+AGG + chr7_4:55710795-55710814 Msa1164170:CDS 45.0%
! TATGTCTCCTCTAAGGGTGT+TGG - chr7_4:55710858-55710877 None:intergenic 45.0%
GCTGCGAATCAGAAAATCTG+GGG - chr7_4:55710881-55710900 None:intergenic 45.0%
GGCTGCGAATCAGAAAATCT+GGG - chr7_4:55710882-55710901 None:intergenic 45.0%
!! CCATGAAGCACTGTTTCCAT+TGG - chr7_4:55711162-55711181 None:intergenic 45.0%
CCAATGGAAACAGTGCTTCA+TGG + chr7_4:55711159-55711178 Msa1164170:CDS 45.0%
!! TGGAAGTTGTTGGTGACCTT+GGG - chr7_4:55711553-55711572 None:intergenic 45.0%
CAGATAGAGCTGGAAGTTGT+TGG - chr7_4:55711563-55711582 None:intergenic 45.0%
CAACAACTTCCAGCTCTATC+TGG + chr7_4:55711561-55711580 Msa1164170:CDS 45.0%
!! GCAGAATTTGCTGAGGAAGA+TGG - chr7_4:55711609-55711628 None:intergenic 45.0%
AGGCTGTCAATCAACTTGGT+GGG + chr7_4:55711682-55711701 Msa1164170:CDS 45.0%
ACATAGGATGAGGAGACCAT+TGG + chr7_4:55712061-55712080 Msa1164170:intron 45.0%
GACAGTGAAGGGACAAAGAA+AGG - chr7_4:55712350-55712369 None:intergenic 45.0%
CCTTACATGAGGACAGTGAA+GGG - chr7_4:55712361-55712380 None:intergenic 45.0%
CCTTCACTGTCCTCATGTAA+GGG + chr7_4:55712359-55712378 Msa1164170:intron 45.0%
TGAATACTGTTGGCAGGAGT+TGG + chr7_4:55712719-55712738 Msa1164170:intron 45.0%
! AAGGGGGAGATGCATTTTAG+AGG + chr7_4:55712960-55712979 Msa1164170:intron 45.0%
! AGGGGGAGATGCATTTTAGA+GGG + chr7_4:55712961-55712980 Msa1164170:intron 45.0%
CTAACTCTGAATCAGTGGGT+AGG + chr7_4:55713543-55713562 Msa1164170:intron 45.0%
AATCAGTGGGTAGGTATCCA+TGG + chr7_4:55713552-55713571 Msa1164170:intron 45.0%
! ATGTAAGCTTTTGGTCCCCA+AGG + chr7_4:55714032-55714051 Msa1164170:intron 45.0%
AACCACAACAACCAAGCCTT+GGG - chr7_4:55714051-55714070 None:intergenic 45.0%
GTTAAGGGTTAAGGAGTTGG+AGG - chr7_4:55714481-55714500 None:intergenic 45.0%
TTCACACTAGTTGGGGAGTT+GGG - chr7_4:55714521-55714540 None:intergenic 45.0%
ATTCACACTAGTTGGGGAGT+TGG - chr7_4:55714522-55714541 None:intergenic 45.0%
AACACAGTGTCTTAGTGGCA+AGG + chr7_4:55714702-55714721 Msa1164170:intron 45.0%
AAGTGAGGAGACTACGACTT+GGG - chr7_4:55714936-55714955 None:intergenic 45.0%
AAAGTGAGGAGACTACGACT+TGG - chr7_4:55714937-55714956 None:intergenic 45.0%
TCACATGCATGAACTGTCCA+AGG + chr7_4:55715792-55715811 Msa1164170:intron 45.0%
GAGGAACAAGTGAAATGCCT+TGG - chr7_4:55715812-55715831 None:intergenic 45.0%
GAATCTAACACAAAAGGGGG+GGG - chr7_4:55715874-55715893 None:intergenic 45.0%
CAGTTGCGAATAGAAGAGCA+AGG + chr7_4:55715905-55715924 Msa1164170:CDS 45.0%
GCTTCTCAAACATCATCTGG+AGG - chr7_4:55715937-55715956 None:intergenic 45.0%
TCAGGACCTGATCAAGCTAA+TGG + chr7_4:55716091-55716110 Msa1164170:CDS 45.0%
TAATGGTAGTACCACGGTTG+AGG + chr7_4:55716108-55716127 Msa1164170:CDS 45.0%
ATCTGTCCTTTGACGCTTAG+GGG - chr7_4:55716230-55716249 None:intergenic 45.0%
CATCTGTCCTTTGACGCTTA+GGG - chr7_4:55716231-55716250 None:intergenic 45.0%
TCATCTGTCCTTTGACGCTT+AGG - chr7_4:55716232-55716251 None:intergenic 45.0%
AAGCCCTCATTGAACACAAC+AGG - chr7_4:55716387-55716406 None:intergenic 45.0%
TATCTAACGGTGTGCACGTG+AGG - chr7_4:55709826-55709845 None:intergenic 50.0%
TAACGAAAACTCTCACCCGC+TGG + chr7_4:55709856-55709875 Msa1164170:five_prime_UTR 50.0%
TCCAATTCACTTGCCGTTCC+CGG + chr7_4:55710008-55710027 Msa1164170:five_prime_UTR 50.0%
!! GAAAGTATCGTCACCGGGAA+CGG - chr7_4:55710024-55710043 None:intergenic 50.0%
GGATGGACAGACAACGATGA+AGG - chr7_4:55710837-55710856 None:intergenic 50.0%
TGTCCATCCAACACCCTTAG+AGG + chr7_4:55710848-55710867 Msa1164170:CDS 50.0%
!! TCTCCTCTAAGGGTGTTGGA+TGG - chr7_4:55710854-55710873 None:intergenic 50.0%
CTGGGGTATGTCTCCTCTAA+GGG - chr7_4:55710864-55710883 None:intergenic 50.0%
! TCTGGGGTATGTCTCCTCTA+AGG - chr7_4:55710865-55710884 None:intergenic 50.0%
CGGCTGCGAATCAGAAAATC+TGG - chr7_4:55710883-55710902 None:intergenic 50.0%
! TGATTCGCAGCCGACTTATG+TGG + chr7_4:55710890-55710909 Msa1164170:CDS 50.0%
GAGCGGTGCCTGCAATATTA+TGG + chr7_4:55711250-55711269 Msa1164170:CDS 50.0%
CTCGGTGGCCATAATATTGC+AGG - chr7_4:55711261-55711280 None:intergenic 50.0%
CTGCAATATTATGGCCACCG+AGG + chr7_4:55711259-55711278 Msa1164170:CDS 50.0%
TCGCTTAGAAAACTCCTCGG+TGG - chr7_4:55711276-55711295 None:intergenic 50.0%
AGCGAAATGATTGGCAGGAG+TGG + chr7_4:55711291-55711310 Msa1164170:CDS 50.0%
GCGAAATGATTGGCAGGAGT+GGG + chr7_4:55711292-55711311 Msa1164170:CDS 50.0%
!! GTTGTTGGTGACCTTGGGAT+TGG - chr7_4:55711548-55711567 None:intergenic 50.0%
!! CTGGAAGTTGTTGGTGACCT+TGG - chr7_4:55711554-55711573 None:intergenic 50.0%
!! GGCTGTTGCAGAATTTGCTG+AGG - chr7_4:55711616-55711635 None:intergenic 50.0%
ACAAATGCCTCGTGAAGCTC+AGG - chr7_4:55711660-55711679 None:intergenic 50.0%
! TGAGCTTCACGAGGCATTTG+TGG + chr7_4:55711659-55711678 Msa1164170:CDS 50.0%
GTGGAGGCTGTCAATCAACT+TGG + chr7_4:55711678-55711697 Msa1164170:CDS 50.0%
GAGGCTGTCAATCAACTTGG+TGG + chr7_4:55711681-55711700 Msa1164170:CDS 50.0%
TTCTACAGGAGCTACCCCTA+AGG + chr7_4:55711791-55711810 Msa1164170:intron 50.0%
TCTACAGGAGCTACCCCTAA+GGG + chr7_4:55711792-55711811 Msa1164170:intron 50.0%
TGAGCTTCAGCACACCCTTA+GGG - chr7_4:55711809-55711828 None:intergenic 50.0%
ATGAGCTTCAGCACACCCTT+AGG - chr7_4:55711810-55711829 None:intergenic 50.0%
CCCTTCACTGTCCTCATGTA+AGG + chr7_4:55712358-55712377 Msa1164170:intron 50.0%
CCCTTACATGAGGACAGTGA+AGG - chr7_4:55712362-55712381 None:intergenic 50.0%
ACCACAACAACCAAGCCTTG+GGG - chr7_4:55714050-55714069 None:intergenic 50.0%
CAACCACAACAACCAAGCCT+TGG - chr7_4:55714052-55714071 None:intergenic 50.0%
TGCAGATGGAGGTCCAGAAA+CGG + chr7_4:55714193-55714212 Msa1164170:CDS 50.0%
GTTAAGGAGTTGGAGGTCCA+GGG - chr7_4:55714474-55714493 None:intergenic 50.0%
GCTCCCTGTCTCACATTAAG+TGG + chr7_4:55714729-55714748 Msa1164170:intron 50.0%
AGTGAGGAGACTACGACTTG+GGG - chr7_4:55714935-55714954 None:intergenic 50.0%
CTTGTGGTACCTCAGAGCAA+AGG + chr7_4:55715383-55715402 Msa1164170:intron 50.0%
CATCAGCTACCTTTGCTCTG+AGG - chr7_4:55715395-55715414 None:intergenic 50.0%
TGCGAATAGAAGAGCAAGGC+AGG + chr7_4:55715909-55715928 Msa1164170:CDS 50.0%
GTGTCAGAAGACACTCCAGA+TGG - chr7_4:55716013-55716032 None:intergenic 50.0%
! GATCAGGTCCTGACTTGCAA+TGG - chr7_4:55716084-55716103 None:intergenic 50.0%
TTTGACGCTTAGGGGCTTGA+GGG - chr7_4:55716222-55716241 None:intergenic 50.0%
ACCGGGAACGGCAAGTGAAT+TGG - chr7_4:55710012-55710031 None:intergenic 55.0%
AGTCCATCGCATTCGTGGCT+TGG - chr7_4:55711637-55711656 None:intergenic 55.0%
TCAGGAGTCCATCGCATTCG+TGG - chr7_4:55711642-55711661 None:intergenic 55.0%
ATGGACTCCTGAGCTTCACG+AGG + chr7_4:55711650-55711669 Msa1164170:CDS 55.0%
! GCTTCACGAGGCATTTGTGG+AGG + chr7_4:55711662-55711681 Msa1164170:CDS 55.0%
GAGCTTCAGCACACCCTTAG+GGG - chr7_4:55711808-55711827 None:intergenic 55.0%
ACTAGGAACAGGCCCCAACT+AGG - chr7_4:55713795-55713814 None:intergenic 55.0%
! AGCTTTTGGTCCCCAAGGCT+TGG + chr7_4:55714037-55714056 Msa1164170:intron 55.0%
! TCCCCAAGGCTTGGTTGTTG+TGG + chr7_4:55714046-55714065 Msa1164170:intron 55.0%
GGAAGCTCTACGACTGCAGA+TGG + chr7_4:55714179-55714198 Msa1164170:CDS 55.0%
AGCTCTACGACTGCAGATGG+AGG + chr7_4:55714182-55714201 Msa1164170:CDS 55.0%
GCTGTTCATGCAGCCGTTTC+TGG - chr7_4:55714209-55714228 None:intergenic 55.0%
ACGGCTGCATGAACAGCTTG+AGG + chr7_4:55714212-55714231 Msa1164170:CDS 55.0%
GGTTAAGGAGTTGGAGGTCC+AGG - chr7_4:55714475-55714494 None:intergenic 55.0%
GGGGAGTTGGGTAGCTCAAA+CGG - chr7_4:55714509-55714528 None:intergenic 55.0%
TCGCTCGTCTCTCTTTGCTG+TGG + chr7_4:55715447-55715466 Msa1164170:intron 55.0%
GCTGGAAGCAGTTGAGAAGC+TGG + chr7_4:55716138-55716157 Msa1164170:CDS 55.0%
CTTTGACGCTTAGGGGCTTG+AGG - chr7_4:55716223-55716242 None:intergenic 55.0%
CTCAAGCCCCTAAGCGTCAA+AGG + chr7_4:55716221-55716240 Msa1164170:CDS 55.0%
CACGCGCTTGAATGGAGCGT+AGG + chr7_4:55709907-55709926 Msa1164170:five_prime_UTR 60.0%
GGGAGTGGAACGGTGACGAA+CGG - chr7_4:55709983-55710002 None:intergenic 60.0%
! TGCAGGCACCGCTCTCTACT+TGG - chr7_4:55711244-55711263 None:intergenic 60.0%
TCGGCAGGACACCAATCCCA+AGG + chr7_4:55711534-55711553 Msa1164170:CDS 60.0%
CAGCCAAGCCACGAATGCGA+TGG + chr7_4:55711631-55711650 Msa1164170:CDS 60.0%
GGGTTCAAGTCCTGGCAAGG+AGG - chr7_4:55714454-55714473 None:intergenic 60.0%
CCAGGGTTCAAGTCCTGGCA+AGG - chr7_4:55714457-55714476 None:intergenic 60.0%
CCTTGCCAGGACTTGAACCC+TGG + chr7_4:55714454-55714473 Msa1164170:intron 60.0%
GAGGTCCAGGGTTCAAGTCC+TGG - chr7_4:55714462-55714481 None:intergenic 60.0%
ACTTGGGGCTGGAGATGCTG+AGG - chr7_4:55714920-55714939 None:intergenic 60.0%
! AGGAGACTACGACTTGGGGC+TGG - chr7_4:55714931-55714950 None:intergenic 60.0%
CAGCGAGCTTTCCTCAACCG+TGG - chr7_4:55716122-55716141 None:intergenic 60.0%
CACGGTTGAGGAAAGCTCGC+TGG + chr7_4:55716120-55716139 Msa1164170:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55709780 55716685 55709780 ID=Msa1164170;Name=Msa1164170
chr7_4 mRNA 55709780 55716685 55709780 ID=Msa1164170-mRNA-1;Parent=Msa1164170;Name=Msa1164170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=357|0.75|0.77|1|1|0.88|9|430|491
chr7_4 exon 55709780 55710079 55709780 ID=Msa1164170-mRNA-1:exon:16351;Parent=Msa1164170-mRNA-1
chr7_4 exon 55710592 55710641 55710592 ID=Msa1164170-mRNA-1:exon:16352;Parent=Msa1164170-mRNA-1
chr7_4 exon 55710749 55711406 55710749 ID=Msa1164170-mRNA-1:exon:16353;Parent=Msa1164170-mRNA-1
chr7_4 exon 55711498 55711711 55711498 ID=Msa1164170-mRNA-1:exon:16354;Parent=Msa1164170-mRNA-1
chr7_4 exon 55711799 55711875 55711799 ID=Msa1164170-mRNA-1:exon:16355;Parent=Msa1164170-mRNA-1
chr7_4 exon 55711956 55711995 55711956 ID=Msa1164170-mRNA-1:exon:16356;Parent=Msa1164170-mRNA-1
chr7_4 exon 55712735 55712792 55712735 ID=Msa1164170-mRNA-1:exon:16357;Parent=Msa1164170-mRNA-1
chr7_4 exon 55714164 55714233 55714164 ID=Msa1164170-mRNA-1:exon:16358;Parent=Msa1164170-mRNA-1
chr7_4 exon 55715890 55716685 55715890 ID=Msa1164170-mRNA-1:exon:16359;Parent=Msa1164170-mRNA-1
chr7_4 five_prime_UTR 55709780 55710079 55709780 ID=Msa1164170-mRNA-1:five_prime_utr;Parent=Msa1164170-mRNA-1
chr7_4 five_prime_UTR 55710592 55710641 55710592 ID=Msa1164170-mRNA-1:five_prime_utr;Parent=Msa1164170-mRNA-1
chr7_4 five_prime_UTR 55710749 55710755 55710749 ID=Msa1164170-mRNA-1:five_prime_utr;Parent=Msa1164170-mRNA-1
chr7_4 CDS 55710756 55711406 55710756 ID=Msa1164170-mRNA-1:cds;Parent=Msa1164170-mRNA-1
chr7_4 CDS 55711498 55711711 55711498 ID=Msa1164170-mRNA-1:cds;Parent=Msa1164170-mRNA-1
chr7_4 CDS 55711799 55711875 55711799 ID=Msa1164170-mRNA-1:cds;Parent=Msa1164170-mRNA-1
chr7_4 CDS 55711956 55711995 55711956 ID=Msa1164170-mRNA-1:cds;Parent=Msa1164170-mRNA-1
chr7_4 CDS 55712735 55712792 55712735 ID=Msa1164170-mRNA-1:cds;Parent=Msa1164170-mRNA-1
chr7_4 CDS 55714164 55714233 55714164 ID=Msa1164170-mRNA-1:cds;Parent=Msa1164170-mRNA-1
chr7_4 CDS 55715890 55716255 55715890 ID=Msa1164170-mRNA-1:cds;Parent=Msa1164170-mRNA-1
chr7_4 three_prime_UTR 55716256 55716685 55716256 ID=Msa1164170-mRNA-1:three_prime_utr;Parent=Msa1164170-mRNA-1
Gene Sequence

>Msa1164170

ATGGAAGCTCGTCCTGCTTTCTCAATTGAAAGATCAAGTGCCCAGCAACTGAATAACATAGGGATGTCTGGAGCACTTCCTTCATCGTTGTCTGTCCATCCAACACCCTTAGAGGAGACATACCCCAGATTTTCTGATTCGCAGCCGACTTATGTGGAAAAAGATCTTAAGACAAAAACTTTTAATCATTCAAGTCATATAAGTTCTAGTGGAGCAGTTGGGCATATGTTTTCATCTTCCCCTGGATATTCTAACGATCTTCATCACTCATCCCTTTCACCTCATGAAAAACACTCTAGAAGTGCTCATTTTATTTCGCAGTCATTGAGTAACATGGCTTCGGTGCCATTACCGTATTCTTCAAATAATGGACCGGTACCTTCTACAACATCAACACATTATTCCAATGGAAACAGTGCTTCATGGCATGCAGATCCCCTGCCTAGTTTTCTTGATTTCTCTGCAAATGCCTCAATTGATAATAACCAAGTAGAGAGCGGTGCCTGCAATATTATGGCCACCGAGGAGTTTTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGACGATACTTTGACTTCTAATTGGAATGATCTTCTTGCTGATAATATTCAAGATCTTGAGCCAAAGGTTAAGGCGGTGGAATCCATTTCAAAGTCATCTTCACAATTTTCGGCAGGACACCAATCCCAAGGTCACCAACAACTTCCAGCTCTATCTGGAGAAAATCATGTTGGTGTTGCTCCATCTTCCTCAGCAAATTCTGCAACAGCCAAGCCACGAATGCGATGGACTCCTGAGCTTCACGAGGCATTTGTGGAGGCTGTCAATCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGAGTTGGAGAGAAAAAACTAAGCCCCATTGAAGATATTTCGTCTCTAGATTTGAAAACTGGTATTGAGATCACGGAAGCTCTACGACTGCAGATGGAGGTCCAGAAACGGCTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAGCAAGGCAGGTACCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGTGTTGAGCCATTTAAGGCATCATCATCAGCCATTGAAAATCCATCTGGAGTGTCTTCTGACACCATGAAAGACTCTCCTACCAAAAATGAATTGGAAGCATCCAAAATGGACCATTGCAAGTCAGGACCTGATCAAGCTAATGGTAGTACCACGGTTGAGGAAAGCTCGCTGGAAGCAGTTGAGAAGCTGGATACCTCCAAATCTCAACAAGCTTCTAAGGATCTTGAGCAAAATGAAAATGAAGATAGCCCTCAAGCCCCTAAGCGTCAAAGGACAGATGAGTAA
Protein sequence

>Msa1164170

MEARPAFSIERSSAQQLNNIGMSGALPSSLSVHPTPLEETYPRFSDSQPTYVEKDLKTKTFNHSSHISSSGAVGHMFSSSPGYSNDLHHSSLSPHEKHSRSAHFISQSLSNMASVPLPYSSNNGPVPSTTSTHYSNGNSASWHADPLPSFLDFSANASIDNNQVESGACNIMATEEFSKRNDWQEWADQLISDDDTLTSNWNDLLADNIQDLEPKVKAVESISKSSSQFSAGHQSQGHQQLPALSGENHVGVAPSSSANSATAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVGEKKLSPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSAIENPSGVSSDTMKDSPTKNELEASKMDHCKSGPDQANGSTTVEESSLEAVEKLDTSKSQQASKDLEQNENEDSPQAPKRQRTDE*