AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930910 MtrunA17_Chr8g0391521 100.000 159 0 0 1 159 1 159 1.18e-117 328
Msa0930910 MtrunA17_Chr1g0177971 80.142 141 28 0 1 141 3 143 4.38e-84 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930910 AT1G70660.1 76.730 159 37 0 1 159 1 159 1.85e-92 265
Msa0930910 AT1G23260.1 75.472 159 38 1 1 159 1 158 3.06e-91 262
Msa0930910 AT1G70650.2 76.316 152 36 0 8 159 444 595 3.00e-84 259
Msa0930910 AT1G70660.2 78.472 144 31 0 1 144 1 144 4.70e-84 244
Msa0930910 AT3G52560.1 77.305 141 32 0 1 141 3 143 3.65e-81 236
Msa0930910 AT3G52560.2 76.224 143 33 1 1 142 3 145 2.43e-79 232
Msa0930910 AT2G36060.1 77.372 137 31 0 5 141 6 142 1.04e-78 230
Msa0930910 AT2G36060.2 76.812 138 31 1 5 141 6 143 7.10e-77 226
Msa0930910 AT3G52560.4 68.125 160 33 1 1 142 3 162 1.26e-76 226
Msa0930910 AT2G36060.3 76.642 137 31 1 5 141 6 141 3.29e-76 224
Msa0930910 AT1G23260.2 71.774 124 34 1 36 159 1 123 7.69e-68 202
Msa0930910 AT3G52560.3 71.963 107 29 1 36 141 1 107 5.04e-55 169

Find 77 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTAGGAATTTCAGATTAT+TGG 0.156726 6_2:+80027832 Msa0930910:CDS
CTTCCGATTCATCATCAAAA+TGG 0.205164 6_2:+80024415 Msa0930910:exon
GCAAGCATGGGAAACAAATT+TGG 0.244783 6_2:-80028797 None:intergenic
CTTTACTGCGGACTCTAATT+TGG 0.258224 6_2:+80030239 Msa0930910:three_prime_UTR
GAAAATTATGAAAACGAAAT+AGG 0.277634 6_2:-80030377 None:intergenic
TCATGGACTGGGACTATTAT+TGG 0.312389 6_2:+80027938 Msa0930910:CDS
ATACATTCATCCTGAAATTA+TGG 0.325529 6_2:+80030324 Msa0930910:three_prime_UTR
AATCGGAAGAGCTAGGGTTT+TGG 0.328866 6_2:-80024401 None:intergenic
ATGGATACATCCATAATTTC+AGG 0.351473 6_2:-80030334 None:intergenic
TAACTACCACTCCAGATTCT+TGG 0.355892 6_2:-80028683 None:intergenic
ATCTCAGCACCAGCCCCTTT+TGG 0.363252 6_2:-80030021 None:intergenic
CTAACAGATGGTGGATTGTC+TGG 0.370636 6_2:-80028627 None:intergenic
ATTATATTGAATAGATAATC+CGG 0.384525 6_2:+80030092 Msa0930910:three_prime_UTR
ACTTGCGTCAACCAAGAATC+TGG 0.394238 6_2:+80028672 Msa0930910:CDS
GAATAGATAATCCGGGTTCA+TGG 0.396088 6_2:+80030100 Msa0930910:three_prime_UTR
GAGCGAGGTGAGAAGGGAAT+TGG 0.414625 6_2:+80027863 Msa0930910:CDS
ACAATTCACGTTAAAATTCA+AGG 0.419494 6_2:-80030197 None:intergenic
CAGGAGGCTGAGATAGCTTC+CGG 0.421676 6_2:-80028892 None:intergenic
TGCCACAAAACAACTTCAAC+TGG 0.424473 6_2:-80028596 None:intergenic
GATGTTGTATCGTGTAATTC+AGG 0.426522 6_2:+80030041 Msa0930910:exon
TGACCATTGCGTTTGTAACC+TGG 0.444410 6_2:+80030149 Msa0930910:three_prime_UTR
AATAGTAGAGAGAGAAAAGC+AGG 0.450884 6_2:-80024378 None:intergenic
TTCCGATTCATCATCAAAAT+GGG 0.456771 6_2:+80024416 Msa0930910:exon
AGTCACTCTTTGATTTCTCC+AGG 0.458828 6_2:-80030167 None:intergenic
ATATTCATGCAGTCATGGAC+TGG 0.466117 6_2:+80027926 Msa0930910:CDS
TCCAATAATCTGAAATTCCT+AGG 0.468152 6_2:-80027833 None:intergenic
TGTTTCCCATGCTTGCTAGT+TGG 0.469816 6_2:+80028804 Msa0930910:CDS
AAATTATGGATGTATCCATT+TGG 0.473820 6_2:+80030338 Msa0930910:three_prime_UTR
AAATGATGTCCCCACAAAAC+CGG 0.476684 6_2:+80028873 Msa0930910:CDS
TAAATTATTCAACAACCAAA+TGG 0.478848 6_2:-80030353 None:intergenic
TCACGTTAAAATTCAAGGAT+AGG 0.481795 6_2:-80030192 None:intergenic
AGAGCTTGAGCGAGGTGAGA+AGG 0.483020 6_2:+80027856 Msa0930910:CDS
AGATGGAAGGATTGACCAAA+AGG 0.483239 6_2:+80030006 Msa0930910:CDS
GATGATGAATCGGAAGAGCT+AGG 0.488456 6_2:-80024408 None:intergenic
AATAGATAATCCGGGTTCAT+GGG 0.497024 6_2:+80030101 Msa0930910:three_prime_UTR
GAGAGAGAAAAGCAGGTAGG+TGG 0.498593 6_2:-80024371 None:intergenic
GAGCTTGAGCGAGGTGAGAA+GGG 0.501264 6_2:+80027857 Msa0930910:CDS
TGTCTATCAATGCAGTTCCT+AGG 0.505496 6_2:+80027816 Msa0930910:intron
GAAAGAGATAAAGACGAAGA+AGG 0.512525 6_2:-80024343 None:intergenic
GATGGAAGGATTGACCAAAA+GGG 0.513888 6_2:+80030007 Msa0930910:CDS
TGCGGACTCTAATTTGGCAG+TGG 0.513983 6_2:+80030245 Msa0930910:three_prime_UTR
GGAGACGGAACTGTTAGCTA+TGG 0.518406 6_2:+80027884 Msa0930910:CDS
TGACTTTCAGGCAATGAAGA+TGG 0.525323 6_2:+80029989 Msa0930910:intron
ATCATCAAAATGGGTTCTGA+AGG 0.533662 6_2:+80024425 Msa0930910:exon
ATGATGAATCGGAAGAGCTA+GGG 0.534938 6_2:-80024407 None:intergenic
ATGATATATTCATGCAGTCA+TGG 0.540165 6_2:+80027921 Msa0930910:CDS
TATTCATGCAGTCATGGACT+GGG 0.545769 6_2:+80027927 Msa0930910:CDS
TAAAGACGAAGAAGGTGTGA+GGG 0.553850 6_2:-80024335 None:intergenic
AAGGATTGACCAAAAGGGGC+TGG 0.566071 6_2:+80030012 Msa0930910:CDS
TTATATCAGACTGTTCATGA+AGG 0.568360 6_2:+80028564 Msa0930910:intron
CATCTGTTAGATTTCAGACA+AGG 0.568599 6_2:+80028640 Msa0930910:CDS
TTATATTGAATAGATAATCC+GGG 0.575627 6_2:+80030093 Msa0930910:three_prime_UTR
CTTGTCTGAAATCTAACAGA+TGG 0.576929 6_2:-80028639 None:intergenic
CGGAACTGTTAGCTATGGGA+TGG 0.580756 6_2:+80027889 Msa0930910:CDS
TTTCAGGCAATGAAGATGGA+AGG 0.586005 6_2:+80029993 Msa0930910:intron
GCGGACTCTAATTTGGCAGT+GGG 0.589226 6_2:+80030246 Msa0930910:three_prime_UTR
GAGACGGAACTGTTAGCTAT+GGG 0.590695 6_2:+80027885 Msa0930910:CDS
AAGCTATCTCAGCCTCCTGA+AGG 0.591688 6_2:+80028896 Msa0930910:CDS
GTAGAGAGAGAAAAGCAGGT+AGG 0.593831 6_2:-80024374 None:intergenic
ATAAAGACGAAGAAGGTGTG+AGG 0.599556 6_2:-80024336 None:intergenic
ATGGAAGGATTGACCAAAAG+GGG 0.614785 6_2:+80030008 Msa0930910:CDS
GTCTGAAATCTAACAGATGG+TGG 0.615185 6_2:-80028636 None:intergenic
TCTGAAGGATCCACCGTCGT+TGG 0.619901 6_2:+80024440 Msa0930910:CDS
GGTGAGAAGGGAATTGGAGA+CGG 0.623567 6_2:+80027869 Msa0930910:CDS
TCTCCAGGTTACAAACGCAA+TGG 0.628468 6_2:-80030152 None:intergenic
AATGCATTAACCCATGAACC+CGG 0.634518 6_2:-80030111 None:intergenic
ATGATTGTAATAATGAAGTG+TGG 0.651262 6_2:-80024311 None:intergenic
CTTGAAACTGCTCTTTACTG+CGG 0.653085 6_2:+80030227 Msa0930910:three_prime_UTR
TTGGAAAAGAGAGTCTACAA+TGG 0.665507 6_2:+80028823 Msa0930910:CDS
TTATTGGAAGAGCTTGAGCG+AGG 0.667755 6_2:+80027848 Msa0930910:CDS
CGTCAACCAAGAATCTGGAG+TGG 0.681244 6_2:+80028677 Msa0930910:CDS
AAGAATAGAACTTACACCCG+GGG 0.681780 6_2:-80027963 None:intergenic
AAGAATGACACACCTTCAGG+AGG 0.686018 6_2:-80028908 None:intergenic
TGGAGAATTACCAACGACGG+TGG 0.699097 6_2:-80024450 None:intergenic
TGTTGGAGAATTACCAACGA+CGG 0.741066 6_2:-80024453 None:intergenic
AGAATAGAACTTACACCCGG+GGG 0.747089 6_2:-80027962 None:intergenic
GAATAGAACTTACACCCGGG+GGG 0.773466 6_2:-80027961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATGTTAAACAAAAAAA+TGG - chr6_2:80025041-80025060 None:intergenic 10.0%
!! TAAATAGAATTTAATATTTC+AGG - chr6_2:80028379-80028398 None:intergenic 10.0%
!! AATAAATAGTAATAGTTATA+AGG - chr6_2:80029585-80029604 None:intergenic 10.0%
!!! TTTTGTTTAACATAAATAGA+TGG + chr6_2:80025044-80025063 Msa0930910:intron 15.0%
!! AAAACTAAAGTAAAAAGATA+AGG - chr6_2:80025802-80025821 None:intergenic 15.0%
!!! TTATCTTTTTACTTTAGTTT+TGG + chr6_2:80025801-80025820 Msa0930910:intron 15.0%
!!! CAATATTTCAAAAAGTTTTT+CGG - chr6_2:80028012-80028031 None:intergenic 15.0%
!! ATTATATTGAATAGATAATC+CGG + chr6_2:80030092-80030111 Msa0930910:three_prime_UTR 15.0%
!! AAAAAGTAGAAAGAGATAAT+AGG - chr6_2:80024500-80024519 None:intergenic 20.0%
!!! GTTTTTTTGAAATTGATCAA+GGG + chr6_2:80024640-80024659 Msa0930910:intron 20.0%
!! TATGTTAAACAAAAAAATGG+CGG - chr6_2:80025038-80025057 None:intergenic 20.0%
!!! TATGGGTACTTTAAAATTTA+TGG + chr6_2:80026742-80026761 Msa0930910:intron 20.0%
!!! TTTTGAAGTGAATTTTCATA+TGG + chr6_2:80028301-80028320 Msa0930910:intron 20.0%
!! AATATTGATAAGAAAACTTC+AGG - chr6_2:80028424-80028443 None:intergenic 20.0%
!!! AAATTAAACATCATTTTGAC+TGG + chr6_2:80028518-80028537 Msa0930910:intron 20.0%
!! TGTAAGTAAGTAAGTAAAAA+TGG - chr6_2:80028709-80028728 None:intergenic 20.0%
!! ACACTGATAAATATCTAAAT+TGG + chr6_2:80028765-80028784 Msa0930910:intron 20.0%
!! TTCTTTCAATATTAAATCCT+GGG - chr6_2:80029495-80029514 None:intergenic 20.0%
!! ATTCTTTCAATATTAAATCC+TGG - chr6_2:80029496-80029515 None:intergenic 20.0%
!!! TAACAAAGTTTATTTCTCTA+GGG - chr6_2:80029753-80029772 None:intergenic 20.0%
!!! TTAACAAAGTTTATTTCTCT+AGG - chr6_2:80029754-80029773 None:intergenic 20.0%
!! TTATATTGAATAGATAATCC+GGG + chr6_2:80030093-80030112 Msa0930910:three_prime_UTR 20.0%
!! CATAAAAAAGCAAAGATAAA+AGG - chr6_2:80030274-80030293 None:intergenic 20.0%
!! TAAATTATTCAACAACCAAA+TGG - chr6_2:80030356-80030375 None:intergenic 20.0%
! ATGATTGTAATAATGAAGTG+TGG - chr6_2:80024314-80024333 None:intergenic 25.0%
! GAAGAAAAAAAGCAGAAAAT+TGG - chr6_2:80024524-80024543 None:intergenic 25.0%
!!! TTTTCTGCTTTTTTTCTTCT+TGG + chr6_2:80024525-80024544 Msa0930910:intron 25.0%
!!! TTTTTTCATCTCATCTGTTT+TGG + chr6_2:80024585-80024604 Msa0930910:intron 25.0%
!!! CGTTTTTTTGAAATTGATCA+AGG + chr6_2:80024639-80024658 Msa0930910:intron 25.0%
! AATGAATTTGCATCAATATC+AGG - chr6_2:80024676-80024695 None:intergenic 25.0%
! ATTTCTGTAATAAACGTAAC+AGG + chr6_2:80024739-80024758 Msa0930910:intron 25.0%
! TTTCTGTAATAAACGTAACA+GGG + chr6_2:80024740-80024759 Msa0930910:intron 25.0%
! TTATTTATGCTCACTGTAAT+TGG + chr6_2:80024824-80024843 Msa0930910:intron 25.0%
! ATGTTAAACAAAAAAATGGC+GGG - chr6_2:80025037-80025056 None:intergenic 25.0%
! TTCCACAACTTATTTAATGA+AGG + chr6_2:80025076-80025095 Msa0930910:intron 25.0%
! ATCCTTCATTAAATAAGTTG+TGG - chr6_2:80025081-80025100 None:intergenic 25.0%
! GACGATAATAGTTATAGTTT+CGG - chr6_2:80025150-80025169 None:intergenic 25.0%
! GAAACTATAACTATTATCGT+CGG + chr6_2:80025149-80025168 Msa0930910:intron 25.0%
! GTTCTTATAGATTGGAATTA+AGG - chr6_2:80025356-80025375 None:intergenic 25.0%
! AATTCCAATCTATAAGAACA+AGG + chr6_2:80025357-80025376 Msa0930910:intron 25.0%
! ATTCCAATCTATAAGAACAA+GGG + chr6_2:80025358-80025377 Msa0930910:intron 25.0%
! AGTAAAAAGATAAGGACTTA+GGG - chr6_2:80025794-80025813 None:intergenic 25.0%
! AAGTAAAAAGATAAGGACTT+AGG - chr6_2:80025795-80025814 None:intergenic 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG - chr6_2:80026528-80026547 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr6_2:80026545-80026564 Msa0930910:intron 25.0%
!! GTGACAAATTTTTATTGATC+AGG + chr6_2:80027085-80027104 Msa0930910:intron 25.0%
!! TCTCAAATTTTATTGCTTCA+GGG + chr6_2:80027209-80027228 Msa0930910:intron 25.0%
! GATGAAGTTTATAATTACTC+AGG - chr6_2:80027277-80027296 None:intergenic 25.0%
! ATAAACTTCATCAAAATGAG+TGG + chr6_2:80027285-80027304 Msa0930910:intron 25.0%
! AAGATATTATTCTCAAGCAA+AGG - chr6_2:80027389-80027408 None:intergenic 25.0%
!!! ACTAACTTGCTTAAAAAACA+AGG + chr6_2:80027486-80027505 Msa0930910:intron 25.0%
! GTGCTGAAATAGTTAATATT+TGG + chr6_2:80027577-80027596 Msa0930910:intron 25.0%
! ATTTGGATCAGATCATAATA+AGG + chr6_2:80027594-80027613 Msa0930910:intron 25.0%
! TTTGGATCAGATCATAATAA+GGG + chr6_2:80027595-80027614 Msa0930910:intron 25.0%
! GAATATAGTAAATTCGTGTA+AGG - chr6_2:80027646-80027665 None:intergenic 25.0%
!!! TTTGTATTTTGATCAGAATG+AGG + chr6_2:80028178-80028197 Msa0930910:intron 25.0%
!!! TTGTATTTTGATCAGAATGA+GGG + chr6_2:80028179-80028198 Msa0930910:intron 25.0%
! AGAAAACTTCAGGAAAATAA+GGG - chr6_2:80028414-80028433 None:intergenic 25.0%
! AAGAAAACTTCAGGAAAATA+AGG - chr6_2:80028415-80028434 None:intergenic 25.0%
! TGATAAATATCTAAATTGGC+AGG + chr6_2:80028769-80028788 Msa0930910:intron 25.0%
! TATGGAAATACATAGTTTGA+TGG - chr6_2:80029668-80029687 None:intergenic 25.0%
! ATGTATTTCCATATCATGAA+AGG + chr6_2:80029675-80029694 Msa0930910:intron 25.0%
!! AACAAAGTTTATTTCTCTAG+GGG - chr6_2:80029752-80029771 None:intergenic 25.0%
! ACAATTCACGTTAAAATTCA+AGG - chr6_2:80030200-80030219 None:intergenic 25.0%
! ATACATTCATCCTGAAATTA+TGG + chr6_2:80030324-80030343 Msa0930910:three_prime_UTR 25.0%
! AAATTATGGATGTATCCATT+TGG + chr6_2:80030338-80030357 Msa0930910:three_prime_UTR 25.0%
TTCCGATTCATCATCAAAAT+GGG + chr6_2:80024416-80024435 Msa0930910:exon 30.0%
!!! AACCCATTTTGATGATGAAT+CGG - chr6_2:80024421-80024440 None:intergenic 30.0%
GGAAATGAAAATAGAAGTGA+AGG - chr6_2:80024479-80024498 None:intergenic 30.0%
TAACCTACTGTAGAAACTTT+AGG + chr6_2:80024925-80024944 Msa0930910:intron 30.0%
TGTTAAACAAAAAAATGGCG+GGG - chr6_2:80025036-80025055 None:intergenic 30.0%
! AACTTTTCAACGAGATTATG+AGG + chr6_2:80025296-80025315 Msa0930910:intron 30.0%
TTCCAATCTATAAGAACAAG+GGG + chr6_2:80025359-80025378 Msa0930910:intron 30.0%
!! GCACTTAGTTTTCATTGATT+TGG + chr6_2:80025588-80025607 Msa0930910:intron 30.0%
!!! AGTTTTCATTGATTTGGAGA+AGG + chr6_2:80025594-80025613 Msa0930910:intron 30.0%
TATTGTTATGGGAAAATCTC+CGG - chr6_2:80025752-80025771 None:intergenic 30.0%
TAGAAACAAGACGGAATATA+TGG + chr6_2:80025972-80025991 Msa0930910:intron 30.0%
TGGAATGTAACTTCAGTAAA+AGG + chr6_2:80025992-80026011 Msa0930910:intron 30.0%
ATATCTAAACCGTGTAACTT+GGG - chr6_2:80026064-80026083 None:intergenic 30.0%
TTACACGGTTTAGATATCTT+GGG + chr6_2:80026067-80026086 Msa0930910:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr6_2:80026399-80026418 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr6_2:80026550-80026569 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG - chr6_2:80026585-80026604 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG + chr6_2:80026589-80026608 Msa0930910:intron 30.0%
TCTTTGATAGAACATTATGG+CGG + chr6_2:80026592-80026611 Msa0930910:intron 30.0%
!! TTATTAGGACCTTTGAAGTA+TGG + chr6_2:80026724-80026743 Msa0930910:intron 30.0%
!! TATTAGGACCTTTGAAGTAT+GGG + chr6_2:80026725-80026744 Msa0930910:intron 30.0%
! TTAAAGTACCCATACTTCAA+AGG - chr6_2:80026736-80026755 None:intergenic 30.0%
CTTAACATGTTGAAGAACAA+GGG - chr6_2:80026947-80026966 None:intergenic 30.0%
TCTTAACATGTTGAAGAACA+AGG - chr6_2:80026948-80026967 None:intergenic 30.0%
CCTAAACAGTTAAAAACCAA+GGG - chr6_2:80026979-80026998 None:intergenic 30.0%
!! CCTTGGTTTTTAACTGTTTA+GGG + chr6_2:80026977-80026996 Msa0930910:intron 30.0%
! AATTTTTATTGATCAGGAGC+AGG + chr6_2:80027091-80027110 Msa0930910:intron 30.0%
! GAAATATGTTGTAACTTGCA+TGG + chr6_2:80027145-80027164 Msa0930910:intron 30.0%
! GTCTCAAATTTTATTGCTTC+AGG + chr6_2:80027208-80027227 Msa0930910:intron 30.0%
! CTCAAATTTTATTGCTTCAG+GGG + chr6_2:80027210-80027229 Msa0930910:intron 30.0%
AAGCAAAGGATACTAAAAAG+AGG - chr6_2:80027375-80027394 None:intergenic 30.0%
CTTAAAAAACAAGGCTAGAT+TGG + chr6_2:80027495-80027514 Msa0930910:intron 30.0%
ACAAATTGCAAATCTACAAG+TGG - chr6_2:80027767-80027786 None:intergenic 30.0%
TCCTAGGAATTTCAGATTAT+TGG + chr6_2:80027832-80027851 Msa0930910:CDS 30.0%
! TCCAATAATCTGAAATTCCT+AGG - chr6_2:80027836-80027855 None:intergenic 30.0%
ATGATATATTCATGCAGTCA+TGG + chr6_2:80027921-80027940 Msa0930910:CDS 30.0%
!!! TCTCTATTTTTGCCCTATTT+TGG + chr6_2:80028080-80028099 Msa0930910:intron 30.0%
GTGAATTGTTGACCAAAATA+GGG - chr6_2:80028095-80028114 None:intergenic 30.0%
TGTGAATTGTTGACCAAAAT+AGG - chr6_2:80028096-80028115 None:intergenic 30.0%
!!! TGTATTTTGATCAGAATGAG+GGG + chr6_2:80028180-80028199 Msa0930910:intron 30.0%
! TTGGGTTTAATGTTTTGCTT+TGG + chr6_2:80028218-80028237 Msa0930910:intron 30.0%
!!! CTTTTTAGCTTCTTCAAAAG+TGG + chr6_2:80028273-80028292 Msa0930910:intron 30.0%
!! TTCTGTTCATGGCTTTAATT+GGG - chr6_2:80028454-80028473 None:intergenic 30.0%
!! ATTCTGTTCATGGCTTTAAT+TGG - chr6_2:80028455-80028474 None:intergenic 30.0%
TTATATCAGACTGTTCATGA+AGG + chr6_2:80028564-80028583 Msa0930910:intron 30.0%
!!! CATAAGTTCTGTGTTTTTTC+TGG + chr6_2:80028998-80029017 Msa0930910:intron 30.0%
TTCTTCTTATAGTGACTGTA+TGG + chr6_2:80029032-80029051 Msa0930910:intron 30.0%
! CTTGGTTGTTGTTGTATATT+AGG + chr6_2:80029153-80029172 Msa0930910:intron 30.0%
TTGAGAGTGAAACTTTATGA+TGG + chr6_2:80029397-80029416 Msa0930910:intron 30.0%
AGTGCATTTGTTTCAATACA+TGG + chr6_2:80029444-80029463 Msa0930910:intron 30.0%
TGGTGTGAAGATAATTTCTT+TGG - chr6_2:80029645-80029664 None:intergenic 30.0%
TGGTAATTCCTTTCATGATA+TGG - chr6_2:80029686-80029705 None:intergenic 30.0%
ACTACCATTCAATGATATGT+TGG - chr6_2:80029794-80029813 None:intergenic 30.0%
CTGACTAAGTTATAAGCTTA+TGG + chr6_2:80029868-80029887 Msa0930910:intron 30.0%
TTATGGTGACATAACTTTGT+TGG + chr6_2:80029885-80029904 Msa0930910:intron 30.0%
TCACGTTAAAATTCAAGGAT+AGG - chr6_2:80030195-80030214 None:intergenic 30.0%
ATGGATACATCCATAATTTC+AGG - chr6_2:80030337-80030356 None:intergenic 30.0%
GAAAGAGATAAAGACGAAGA+AGG - chr6_2:80024346-80024365 None:intergenic 35.0%
AATAGTAGAGAGAGAAAAGC+AGG - chr6_2:80024381-80024400 None:intergenic 35.0%
CTTCCGATTCATCATCAAAA+TGG + chr6_2:80024415-80024434 Msa0930910:exon 35.0%
! ATCATCAAAATGGGTTCTGA+AGG + chr6_2:80024425-80024444 Msa0930910:exon 35.0%
! GAAAATAGAAGTGAAGGTGT+TGG - chr6_2:80024473-80024492 None:intergenic 35.0%
!!! TCTGCTTTTTTTCTTCTTGG+TGG + chr6_2:80024528-80024547 Msa0930910:intron 35.0%
TAACTATTATCGTCGGATTC+AGG + chr6_2:80025156-80025175 Msa0930910:intron 35.0%
TCCAATCTATAAGAACAAGG+GGG + chr6_2:80025360-80025379 Msa0930910:intron 35.0%
TACAAGATTGCGCGAATTAT+AGG + chr6_2:80025386-80025405 Msa0930910:intron 35.0%
ACAAGATTGCGCGAATTATA+GGG + chr6_2:80025387-80025406 Msa0930910:intron 35.0%
TGAGTCATACCATGAAGTTA+TGG + chr6_2:80025422-80025441 Msa0930910:intron 35.0%
GAGTCATACCATGAAGTTAT+GGG + chr6_2:80025423-80025442 Msa0930910:intron 35.0%
ATACCATGAAGTTATGGGAA+AGG + chr6_2:80025428-80025447 Msa0930910:intron 35.0%
TACCATGAAGTTATGGGAAA+GGG + chr6_2:80025429-80025448 Msa0930910:intron 35.0%
AAGAAAAGAGACTCACGTTA+CGG + chr6_2:80025468-80025487 Msa0930910:intron 35.0%
!!! AACCAATTTGGTTTTATGCC+TGG + chr6_2:80025493-80025512 Msa0930910:intron 35.0%
!!! ACCAATTTGGTTTTATGCCT+GGG + chr6_2:80025494-80025513 Msa0930910:intron 35.0%
!! ATCCTGGATAGCTCTAATAT+AGG - chr6_2:80025683-80025702 None:intergenic 35.0%
! GGAGATTTTCCCATAACAAT+AGG + chr6_2:80025751-80025770 Msa0930910:intron 35.0%
AACTTCAGTAAAAGGAGAAG+TGG + chr6_2:80026000-80026019 Msa0930910:intron 35.0%
ACTTCAGTAAAAGGAGAAGT+GGG + chr6_2:80026001-80026020 Msa0930910:intron 35.0%
ATATCATACCCCAAGTTACA+CGG + chr6_2:80026052-80026071 Msa0930910:intron 35.0%
TATCTAAACCGTGTAACTTG+GGG - chr6_2:80026063-80026082 None:intergenic 35.0%
GATATCTAAACCGTGTAACT+TGG - chr6_2:80026065-80026084 None:intergenic 35.0%
GTTACACGGTTTAGATATCT+TGG + chr6_2:80026066-80026085 Msa0930910:intron 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG - chr6_2:80026094-80026113 None:intergenic 35.0%
TACATCATCGTATTCAAGCT+GGG + chr6_2:80026127-80026146 Msa0930910:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + chr6_2:80026192-80026211 Msa0930910:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr6_2:80026201-80026220 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + chr6_2:80026205-80026224 Msa0930910:intron 35.0%
AGACTAGACATGATAGGATT+AGG + chr6_2:80026340-80026359 Msa0930910:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr6_2:80026392-80026411 Msa0930910:intron 35.0%
TGGTAGAAAATACGCTTAGA+TGG + chr6_2:80026412-80026431 Msa0930910:intron 35.0%
GAAAATACGCTTAGATGGTT+TGG + chr6_2:80026417-80026436 Msa0930910:intron 35.0%
TTGATCTACTCTTCTTACCA+CGG - chr6_2:80026469-80026488 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+TGG + chr6_2:80026470-80026489 Msa0930910:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr6_2:80026473-80026492 Msa0930910:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr6_2:80026557-80026576 Msa0930910:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr6_2:80026569-80026588 Msa0930910:intron 35.0%
TACAAGCTCATCCATTTATC+TGG + chr6_2:80026694-80026713 Msa0930910:intron 35.0%
ACAAGCTCATCCATTTATCT+GGG + chr6_2:80026695-80026714 Msa0930910:intron 35.0%
CTTTAGTCAATCAACAATCG+CGG + chr6_2:80026773-80026792 Msa0930910:intron 35.0%
TGTTAAGACAAAAATGCCCT+TGG + chr6_2:80026960-80026979 Msa0930910:intron 35.0%
!! CCCTTGGTTTTTAACTGTTT+AGG + chr6_2:80026976-80026995 Msa0930910:intron 35.0%
CCCTAAACAGTTAAAAACCA+AGG - chr6_2:80026980-80026999 None:intergenic 35.0%
!!! TTGTTGGAAGCGTTTTCTTT+TGG + chr6_2:80027237-80027256 Msa0930910:intron 35.0%
! GTTTTCTTTTGGATCCTCAT+TGG + chr6_2:80027248-80027267 Msa0930910:intron 35.0%
AATTACTCAGGTTACCAATG+AGG - chr6_2:80027265-80027284 None:intergenic 35.0%
TAGTTCCTGAGAGTTCTTTA+TGG + chr6_2:80027340-80027359 Msa0930910:intron 35.0%
AGTTCCTGAGAGTTCTTTAT+GGG + chr6_2:80027341-80027360 Msa0930910:intron 35.0%
GTGATCTAAATCATGAAAGC+TGG + chr6_2:80027460-80027479 Msa0930910:intron 35.0%
AGAAGTTATTGGTCCAATTC+AGG - chr6_2:80027531-80027550 None:intergenic 35.0%
TGAATTGGACCAATAACTTC+TGG + chr6_2:80027530-80027549 Msa0930910:intron 35.0%
AACAGGATTCCAGAAGTTAT+TGG - chr6_2:80027542-80027561 None:intergenic 35.0%
!! AATAACTTCTGGAATCCTGT+TGG + chr6_2:80027541-80027560 Msa0930910:intron 35.0%
!! ATAACTTCTGGAATCCTGTT+GGG + chr6_2:80027542-80027561 Msa0930910:intron 35.0%
AAAGAATAGAACTTACACCC+GGG - chr6_2:80027967-80027986 None:intergenic 35.0%
CAAAGAATAGAACTTACACC+CGG - chr6_2:80027968-80027987 None:intergenic 35.0%
! ATATCCAGCATAAGTTGACA+AGG - chr6_2:80028123-80028142 None:intergenic 35.0%
!!! GTTTTGCTTTGGAAACTAAG+TGG + chr6_2:80028229-80028248 Msa0930910:intron 35.0%
! CTTTGGAAACTAAGTGGTTA+TGG + chr6_2:80028235-80028254 Msa0930910:intron 35.0%
CATGTTAGCTACAAATGACA+AGG - chr6_2:80028329-80028348 None:intergenic 35.0%
!! TCTGTTCATGGCTTTAATTG+GGG - chr6_2:80028453-80028472 None:intergenic 35.0%
!! TACCAGTTGAAGTTGTTTTG+TGG + chr6_2:80028594-80028613 Msa0930910:CDS 35.0%
! CTTGTCTGAAATCTAACAGA+TGG - chr6_2:80028642-80028661 None:intergenic 35.0%
CATCTGTTAGATTTCAGACA+AGG + chr6_2:80028640-80028659 Msa0930910:CDS 35.0%
TTGGAAAAGAGAGTCTACAA+TGG + chr6_2:80028823-80028842 Msa0930910:CDS 35.0%
AATAAGAATGACACACCTTC+AGG - chr6_2:80028914-80028933 None:intergenic 35.0%
TTCATCACTGTCCAAATTTG+TGG + chr6_2:80029091-80029110 Msa0930910:intron 35.0%
GTTGTATATTAGGTAACCAC+TGG + chr6_2:80029163-80029182 Msa0930910:intron 35.0%
! TAACCACTGGTTGTCTAATA+TGG + chr6_2:80029176-80029195 Msa0930910:intron 35.0%
TGTGAAATTACTGCATCAGT+TGG + chr6_2:80029218-80029237 Msa0930910:intron 35.0%
CATTAATTGTCAACCTACTC+TGG + chr6_2:80029254-80029273 Msa0930910:intron 35.0%
TACATTTGTATCTCCAGAGT+AGG - chr6_2:80029270-80029289 None:intergenic 35.0%
TTGAGAGTGATACTTTCTGA+TGG - chr6_2:80029319-80029338 None:intergenic 35.0%
!!! TCGAACAGCTTTTAACTTCT+CGG + chr6_2:80029368-80029387 Msa0930910:intron 35.0%
!!! GCATTTGTTTTGATATTCCC+AGG + chr6_2:80029475-80029494 Msa0930910:intron 35.0%
GGAAATACATAGTTTGATGG+TGG - chr6_2:80029665-80029684 None:intergenic 35.0%
GGAATTACCAAAATGTGTAG+CGG + chr6_2:80029696-80029715 Msa0930910:intron 35.0%
TGTGCCAACATATCATTGAA+TGG + chr6_2:80029787-80029806 Msa0930910:intron 35.0%
CATAACTTTGTTGGAGGAAA+TGG + chr6_2:80029894-80029913 Msa0930910:intron 35.0%
AGTGATCATACATGACTTTC+AGG + chr6_2:80029977-80029996 Msa0930910:intron 35.0%
GATGTTGTATCGTGTAATTC+AGG + chr6_2:80030041-80030060 Msa0930910:exon 35.0%
AATAGATAATCCGGGTTCAT+GGG + chr6_2:80030101-80030120 Msa0930910:three_prime_UTR 35.0%
! TAAAGACGAAGAAGGTGTGA+GGG - chr6_2:80024338-80024357 None:intergenic 40.0%
! ATAAAGACGAAGAAGGTGTG+AGG - chr6_2:80024339-80024358 None:intergenic 40.0%
ATGATGAATCGGAAGAGCTA+GGG - chr6_2:80024410-80024429 None:intergenic 40.0%
TGTTGGAGAATTACCAACGA+CGG - chr6_2:80024456-80024475 None:intergenic 40.0%
CTGCCTAAAGTTTCTACAGT+AGG - chr6_2:80024931-80024950 None:intergenic 40.0%
TTAAGGAGTGGAGTGATAAG+GGG - chr6_2:80024987-80025006 None:intergenic 40.0%
GTTAAGGAGTGGAGTGATAA+GGG - chr6_2:80024988-80025007 None:intergenic 40.0%
AGTTAAGGAGTGGAGTGATA+AGG - chr6_2:80024989-80025008 None:intergenic 40.0%
AGATCTTACCAGACTCTAAC+AGG + chr6_2:80025104-80025123 Msa0930910:intron 40.0%
ATGTCTAACCTGTTAGAGTC+TGG - chr6_2:80025115-80025134 None:intergenic 40.0%
TAACAGGTTAGACATCAGAG+AGG + chr6_2:80025120-80025139 Msa0930910:intron 40.0%
!! AGGTGAAAGAAGCGTTGAAA+AGG + chr6_2:80025185-80025204 Msa0930910:intron 40.0%
GCGTTGAAAAGGATGAGTAA+TGG + chr6_2:80025196-80025215 Msa0930910:intron 40.0%
GAAAAGGATGAGTAATGGCA+AGG + chr6_2:80025201-80025220 Msa0930910:intron 40.0%
ACAACATACCTATCGAAGTG+TGG + chr6_2:80025236-80025255 Msa0930910:intron 40.0%
! AGACTTTTCCACACTTCGAT+AGG - chr6_2:80025247-80025266 None:intergenic 40.0%
ATCGAAGTGTGGAAAAGTCT+TGG + chr6_2:80025247-80025266 Msa0930910:intron 40.0%
TCCCCCTTGTTCTTATAGAT+TGG - chr6_2:80025364-80025383 None:intergenic 40.0%
CAAGATTGCGCGAATTATAG+GGG + chr6_2:80025388-80025407 Msa0930910:intron 40.0%
TACCCTTTCCCATAACTTCA+TGG - chr6_2:80025434-80025453 None:intergenic 40.0%
CACGTTACGGATAACCAATT+TGG + chr6_2:80025481-80025500 Msa0930910:intron 40.0%
TCCCAGGCATAAAACCAAAT+TGG - chr6_2:80025498-80025517 None:intergenic 40.0%
!!! AATTTGGTTTTATGCCTGGG+AGG + chr6_2:80025497-80025516 Msa0930910:intron 40.0%
! GAGTACCTAGAGAGATTTTG+TGG + chr6_2:80025626-80025645 Msa0930910:intron 40.0%
GCTTTCCACAAAATCTCTCT+AGG - chr6_2:80025634-80025653 None:intergenic 40.0%
TGCCTATATTAGAGCTATCC+AGG + chr6_2:80025678-80025697 Msa0930910:intron 40.0%
AGCTATCCAGGATATGTATG+AGG + chr6_2:80025690-80025709 Msa0930910:intron 40.0%
GCTATCCAGGATATGTATGA+GGG + chr6_2:80025691-80025710 Msa0930910:intron 40.0%
CTATCCAGGATATGTATGAG+GGG + chr6_2:80025692-80025711 Msa0930910:intron 40.0%
TATCCAGGATATGTATGAGG+GGG + chr6_2:80025693-80025712 Msa0930910:intron 40.0%
TGGTGCAGTCCTATTGTTAT+GGG - chr6_2:80025763-80025782 None:intergenic 40.0%
TTGGTGCAGTCCTATTGTTA+TGG - chr6_2:80025764-80025783 None:intergenic 40.0%
ATAACAATAGGACTGCACCA+AGG + chr6_2:80025763-80025782 Msa0930910:intron 40.0%
TAACAATAGGACTGCACCAA+GGG + chr6_2:80025764-80025783 Msa0930910:intron 40.0%
TACATCTCAGTGCTAACTCT+TGG - chr6_2:80025846-80025865 None:intergenic 40.0%
!! ATTCCGTCTTGTTTCTACTC+AGG - chr6_2:80025969-80025988 None:intergenic 40.0%
TCTACCTTAGAGGTGAAAGT+TGG + chr6_2:80026024-80026043 Msa0930910:intron 40.0%
ATCTCCAACTTTCACCTCTA+AGG - chr6_2:80026031-80026050 None:intergenic 40.0%
GGGTCCATAGTACAAAATGA+CGG + chr6_2:80026087-80026106 Msa0930910:intron 40.0%
GTACATCATCGTATTCAAGC+TGG + chr6_2:80026126-80026145 Msa0930910:intron 40.0%
TGACATCATTAGAGAGAGAG+TGG + chr6_2:80026365-80026384 Msa0930910:intron 40.0%
GACATCATTAGAGAGAGAGT+GGG + chr6_2:80026366-80026385 Msa0930910:intron 40.0%
ACATCATTAGAGAGAGAGTG+GGG + chr6_2:80026367-80026386 Msa0930910:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr6_2:80026498-80026517 Msa0930910:intron 40.0%
ATAACCACAGCCCAGATAAA+TGG - chr6_2:80026708-80026727 None:intergenic 40.0%
TTATCTGGGCTGTGGTTATT+AGG + chr6_2:80026709-80026728 Msa0930910:intron 40.0%
ACATAGTAGACGAGCAGAAA+AGG + chr6_2:80026913-80026932 Msa0930910:intron 40.0%
AATTCCTAAAGCAGTGTAGC+GGG - chr6_2:80027065-80027084 None:intergenic 40.0%
CAATTCCTAAAGCAGTGTAG+CGG - chr6_2:80027066-80027085 None:intergenic 40.0%
! GATCAGGAGCAGGAAATTTT+AGG + chr6_2:80027101-80027120 Msa0930910:intron 40.0%
! TTTGAGACACCAGATTCTCA+GGG - chr6_2:80027196-80027215 None:intergenic 40.0%
! ATTTGAGACACCAGATTCTC+AGG - chr6_2:80027197-80027216 None:intergenic 40.0%
TTGCTTCAGGGGTTATTTGT+TGG + chr6_2:80027221-80027240 Msa0930910:intron 40.0%
GTTCCTGAGAGTTCTTTATG+GGG + chr6_2:80027342-80027361 Msa0930910:intron 40.0%
TTCCTGAGAGTTCTTTATGG+GGG + chr6_2:80027343-80027362 Msa0930910:intron 40.0%
CTTCTGTTGTGTACCAAACT+TGG + chr6_2:80027406-80027425 Msa0930910:intron 40.0%
TACTTGTGAGTTGCCAAGTT+TGG - chr6_2:80027422-80027441 None:intergenic 40.0%
ACTTGGCAACTCACAAGTAT+TGG + chr6_2:80027423-80027442 Msa0930910:intron 40.0%
TGGTTACTCTTGACCTGAAT+TGG + chr6_2:80027515-80027534 Msa0930910:intron 40.0%
!! TAACTTCTGGAATCCTGTTG+GGG + chr6_2:80027543-80027562 Msa0930910:intron 40.0%
TGTAAGGAAATGCACACTCT+TGG - chr6_2:80027630-80027649 None:intergenic 40.0%
TGTCTATCAATGCAGTTCCT+AGG + chr6_2:80027816-80027835 Msa0930910:intron 40.0%
ATATTCATGCAGTCATGGAC+TGG + chr6_2:80027926-80027945 Msa0930910:CDS 40.0%
TATTCATGCAGTCATGGACT+GGG + chr6_2:80027927-80027946 Msa0930910:CDS 40.0%
!! TCATGGACTGGGACTATTAT+TGG + chr6_2:80027938-80027957 Msa0930910:CDS 40.0%
AAGAATAGAACTTACACCCG+GGG - chr6_2:80027966-80027985 None:intergenic 40.0%
AGGGCAAAAATAGAGAACTG+TGG - chr6_2:80028076-80028095 None:intergenic 40.0%
TCATCCTTGTCAACTTATGC+TGG + chr6_2:80028116-80028135 Msa0930910:intron 40.0%
CTTCAGGAAAATAAGGGTCT+AGG - chr6_2:80028408-80028427 None:intergenic 40.0%
CAGCACATGAATTCTGTTCA+TGG - chr6_2:80028465-80028484 None:intergenic 40.0%
! TGTGCTGATCTCTAGTTGTT+AGG + chr6_2:80028478-80028497 Msa0930910:intron 40.0%
TGCCACAAAACAACTTCAAC+TGG - chr6_2:80028599-80028618 None:intergenic 40.0%
!! GTTGAAGTTGTTTTGTGGCA+AGG + chr6_2:80028599-80028618 Msa0930910:CDS 40.0%
! GTCTGAAATCTAACAGATGG+TGG - chr6_2:80028639-80028658 None:intergenic 40.0%
TAACTACCACTCCAGATTCT+TGG - chr6_2:80028686-80028705 None:intergenic 40.0%
GCAAGCATGGGAAACAAATT+TGG - chr6_2:80028800-80028819 None:intergenic 40.0%
! CTTTTCCAACTAGCAAGCAT+GGG - chr6_2:80028812-80028831 None:intergenic 40.0%
! TCTTTTCCAACTAGCAAGCA+TGG - chr6_2:80028813-80028832 None:intergenic 40.0%
AAATGATGTCCCCACAAAAC+CGG + chr6_2:80028873-80028892 Msa0930910:CDS 40.0%
TCCATTGTAGCAGTTGCTAT+AGG + chr6_2:80028975-80028994 Msa0930910:intron 40.0%
ACACCATATTAGACAACCAG+TGG - chr6_2:80029182-80029201 None:intergenic 40.0%
CTGGTTGTCTAATATGGTGT+TGG + chr6_2:80029182-80029201 Msa0930910:intron 40.0%
TACTGCATCAGTTGGTTAAG+TGG + chr6_2:80029226-80029245 Msa0930910:intron 40.0%
TCTAGGGGTTAAACTGTGTT+TGG - chr6_2:80029737-80029756 None:intergenic 40.0%
GCTTATAACTTAGTCAGCAC+AGG - chr6_2:80029865-80029884 None:intergenic 40.0%
TGGTGACATAACTTTGTTGG+AGG + chr6_2:80029888-80029907 Msa0930910:intron 40.0%
!! GAAATGGTGCACTGGTTATT+AGG + chr6_2:80029910-80029929 Msa0930910:intron 40.0%
TGACTTTCAGGCAATGAAGA+TGG + chr6_2:80029989-80030008 Msa0930910:intron 40.0%
TTTCAGGCAATGAAGATGGA+AGG + chr6_2:80029993-80030012 Msa0930910:intron 40.0%
AGATGGAAGGATTGACCAAA+AGG + chr6_2:80030006-80030025 Msa0930910:CDS 40.0%
GATGGAAGGATTGACCAAAA+GGG + chr6_2:80030007-80030026 Msa0930910:CDS 40.0%
ATGGAAGGATTGACCAAAAG+GGG + chr6_2:80030008-80030027 Msa0930910:CDS 40.0%
GAATAGATAATCCGGGTTCA+TGG + chr6_2:80030100-80030119 Msa0930910:three_prime_UTR 40.0%
AATGCATTAACCCATGAACC+CGG - chr6_2:80030114-80030133 None:intergenic 40.0%
! AGTCACTCTTTGATTTCTCC+AGG - chr6_2:80030170-80030189 None:intergenic 40.0%
CTTGAAACTGCTCTTTACTG+CGG + chr6_2:80030227-80030246 Msa0930910:three_prime_UTR 40.0%
CTTTACTGCGGACTCTAATT+TGG + chr6_2:80030239-80030258 Msa0930910:three_prime_UTR 40.0%
GTAGAGAGAGAAAAGCAGGT+AGG - chr6_2:80024377-80024396 None:intergenic 45.0%
! AATCGGAAGAGCTAGGGTTT+TGG - chr6_2:80024404-80024423 None:intergenic 45.0%
GATGATGAATCGGAAGAGCT+AGG - chr6_2:80024411-80024430 None:intergenic 45.0%
GTGGTTGCTTGCTTGTGTAT+AGG + chr6_2:80024547-80024566 Msa0930910:intron 45.0%
CTACAGTAGGTTAACTGAGC+AGG - chr6_2:80024918-80024937 None:intergenic 45.0%
! AAATGGCGGGGATATAACGT+TGG - chr6_2:80025024-80025043 None:intergenic 45.0%
ATGAGTAATGGCAAGGCAGT+TGG + chr6_2:80025208-80025227 Msa0930910:intron 45.0%
TGAGTAATGGCAAGGCAGTT+GGG + chr6_2:80025209-80025228 Msa0930910:intron 45.0%
TGGAAAAGTCTTGGCGATAG+AGG + chr6_2:80025256-80025275 Msa0930910:intron 45.0%
AGTCTTGGCGATAGAGGAAT+TGG + chr6_2:80025262-80025281 Msa0930910:intron 45.0%
GTCTTGGCGATAGAGGAATT+GGG + chr6_2:80025263-80025282 Msa0930910:intron 45.0%
TATGAGGACGCAGAAAATGC+CGG + chr6_2:80025312-80025331 Msa0930910:intron 45.0%
! AGAGATTTTGTGGAAAGCCC+TGG + chr6_2:80025636-80025655 Msa0930910:intron 45.0%
! GCAGATGATGTAGTCTTGCT+TGG + chr6_2:80025874-80025893 Msa0930910:intron 45.0%
ATCATCGTATTCAAGCTGGG+TGG + chr6_2:80026130-80026149 Msa0930910:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr6_2:80026139-80026158 Msa0930910:intron 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + chr6_2:80026153-80026172 Msa0930910:intron 45.0%
CTTATCGCACAAAACACCTG+AGG - chr6_2:80026172-80026191 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG + chr6_2:80026239-80026258 Msa0930910:intron 45.0%
TCCGTACCATACAACATTGC+CGG - chr6_2:80026243-80026262 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + chr6_2:80026247-80026266 Msa0930910:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + chr6_2:80026248-80026267 Msa0930910:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG - chr6_2:80026284-80026303 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG + chr6_2:80026287-80026306 Msa0930910:intron 45.0%
GTGGGAAGACTAGACATGAT+AGG + chr6_2:80026334-80026353 Msa0930910:intron 45.0%
CATCATTAGAGAGAGAGTGG+GGG + chr6_2:80026368-80026387 Msa0930910:intron 45.0%
GGTTTGGACATGTAGAGAGA+AGG + chr6_2:80026433-80026452 Msa0930910:intron 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr6_2:80026482-80026501 Msa0930910:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr6_2:80026492-80026511 Msa0930910:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG - chr6_2:80026639-80026658 None:intergenic 45.0%
TCATCCATTTATCTGGGCTG+TGG + chr6_2:80026701-80026720 Msa0930910:intron 45.0%
TAGTCAATCAACAATCGCGG+TGG + chr6_2:80026776-80026795 Msa0930910:intron 45.0%
!! CACGTTGTTTTACATAGCGC+TGG - chr6_2:80026821-80026840 None:intergenic 45.0%
CAGCGCTATGTAAAACAACG+TGG + chr6_2:80026819-80026838 Msa0930910:intron 45.0%
CGCTATGTAAAACAACGTGG+TGG + chr6_2:80026822-80026841 Msa0930910:intron 45.0%
ATGTAAAACAACGTGGTGGC+TGG + chr6_2:80026826-80026845 Msa0930910:intron 45.0%
GCTGGTAGAGAACTATGTTG+CGG + chr6_2:80026844-80026863 Msa0930910:intron 45.0%
GGAAAAAGTCGCAATGCAGT+GGG - chr6_2:80027044-80027063 None:intergenic 45.0%
! TTTTCCCGCTACACTGCTTT+AGG + chr6_2:80027058-80027077 Msa0930910:intron 45.0%
! AGGAGCAGGAAATTTTAGGC+AGG + chr6_2:80027105-80027124 Msa0930910:intron 45.0%
! GGAGCAGGAAATTTTAGGCA+GGG + chr6_2:80027106-80027125 Msa0930910:intron 45.0%
! GTTGTAACTTGCATGGTGTG+TGG + chr6_2:80027152-80027171 Msa0930910:intron 45.0%
! TAACTTGCATGGTGTGTGGA+GGG + chr6_2:80027156-80027175 Msa0930910:intron 45.0%
TGAGTGGCATGTCATTCTTG+AGG + chr6_2:80027301-80027320 Msa0930910:intron 45.0%
TCCTGTTGGGGCTATAACTT+TGG + chr6_2:80027555-80027574 Msa0930910:intron 45.0%
ACCAAAGTTATAGCCCCAAC+AGG - chr6_2:80027559-80027578 None:intergenic 45.0%
AGGAAATGCACACTCTTGGA+CGG - chr6_2:80027626-80027645 None:intergenic 45.0%
TTATTGGAAGAGCTTGAGCG+AGG + chr6_2:80027848-80027867 Msa0930910:CDS 45.0%
GAGACGGAACTGTTAGCTAT+GGG + chr6_2:80027885-80027904 Msa0930910:CDS 45.0%
AGAATAGAACTTACACCCGG+GGG - chr6_2:80027965-80027984 None:intergenic 45.0%
!! CTAACAGATGGTGGATTGTC+TGG - chr6_2:80028630-80028649 None:intergenic 45.0%
ACTTGCGTCAACCAAGAATC+TGG + chr6_2:80028672-80028691 Msa0930910:CDS 45.0%
! TGTTTCCCATGCTTGCTAGT+TGG + chr6_2:80028804-80028823 Msa0930910:CDS 45.0%
!! AGATAGCTTCCGGTTTTGTG+GGG - chr6_2:80028885-80028904 None:intergenic 45.0%
!! GAGATAGCTTCCGGTTTTGT+GGG - chr6_2:80028886-80028905 None:intergenic 45.0%
! TGAGATAGCTTCCGGTTTTG+TGG - chr6_2:80028887-80028906 None:intergenic 45.0%
AAGAATGACACACCTTCAGG+AGG - chr6_2:80028911-80028930 None:intergenic 45.0%
GCCTATAGCAACTGCTACAA+TGG - chr6_2:80028979-80028998 None:intergenic 45.0%
CTGTCCAAATTTGTGGACAG+TGG + chr6_2:80029098-80029117 Msa0930910:intron 45.0%
GTGTCCACTGTCCACAAATT+TGG - chr6_2:80029105-80029124 None:intergenic 45.0%
ACCAACCTCACTTCACTTAG+TGG + chr6_2:80029123-80029142 Msa0930910:intron 45.0%
CCAACCTCACTTCACTTAGT+GGG + chr6_2:80029124-80029143 Msa0930910:intron 45.0%
GTATCCCACTAAGTGAAGTG+AGG - chr6_2:80029131-80029150 None:intergenic 45.0%
TCACTTAGTGGGATACAGCT+TGG + chr6_2:80029135-80029154 Msa0930910:intron 45.0%
! TAGCTCACCGCTACACATTT+TGG - chr6_2:80029706-80029725 None:intergenic 45.0%
AAAATGTGTAGCGGTGAGCT+AGG + chr6_2:80029705-80029724 Msa0930910:intron 45.0%
AAATGTGTAGCGGTGAGCTA+GGG + chr6_2:80029706-80029725 Msa0930910:intron 45.0%
TGACCATTGCGTTTGTAACC+TGG + chr6_2:80030149-80030168 Msa0930910:three_prime_UTR 45.0%
TCTCCAGGTTACAAACGCAA+TGG - chr6_2:80030155-80030174 None:intergenic 45.0%
GAGAGAGAAAAGCAGGTAGG+TGG - chr6_2:80024374-80024393 None:intergenic 50.0%
TGGAGAATTACCAACGACGG+TGG - chr6_2:80024453-80024472 None:intergenic 50.0%
TTAGGCAGCATGCTCTTGTG+TGG + chr6_2:80024943-80024962 Msa0930910:intron 50.0%
GAGTGATAAGGGGTGATCTC+GGG - chr6_2:80024977-80024996 None:intergenic 50.0%
GGAGTGATAAGGGGTGATCT+CGG - chr6_2:80024978-80024997 None:intergenic 50.0%
GATATAACGTTGGCCAGGGT+GGG - chr6_2:80025014-80025033 None:intergenic 50.0%
CAGGTTAGACATCAGAGAGG+AGG + chr6_2:80025123-80025142 Msa0930910:intron 50.0%
TTGGCGATAGAGGAATTGGG+TGG + chr6_2:80025266-80025285 Msa0930910:intron 50.0%
CTACTTACTTCGACGCGTGA+TGG + chr6_2:80025537-80025556 Msa0930910:intron 50.0%
TGGAAAGCCCTGGAGAAGAA+AGG + chr6_2:80025646-80025665 Msa0930910:intron 50.0%
GGAAAGCCCTGGAGAAGAAA+GGG + chr6_2:80025647-80025666 Msa0930910:intron 50.0%
GAAAGCCCTGGAGAAGAAAG+GGG + chr6_2:80025648-80025667 Msa0930910:intron 50.0%
AAGCCCCCTCATACATATCC+TGG - chr6_2:80025699-80025718 None:intergenic 50.0%
AAGGACTTAGGGTTGACCCT+TGG - chr6_2:80025783-80025802 None:intergenic 50.0%
! TAGTCTTGCTTGGTGAGTCG+AGG + chr6_2:80025884-80025903 Msa0930910:intron 50.0%
! AGTCTTGCTTGGTGAGTCGA+GGG + chr6_2:80025885-80025904 Msa0930910:intron 50.0%
GAGTCGAGGGAGGAGTTAAA+CGG + chr6_2:80025898-80025917 Msa0930910:intron 50.0%
AGTCGAGGGAGGAGTTAAAC+GGG + chr6_2:80025899-80025918 Msa0930910:intron 50.0%
TAAACGGGAGGCTAGAGACT+TGG + chr6_2:80025914-80025933 Msa0930910:intron 50.0%
! AGGCAAGCCTTAGAAGCGTA+CGG + chr6_2:80025937-80025956 Msa0930910:intron 50.0%
!! CCGTCTTGTTTCTACTCAGG+CGG - chr6_2:80025966-80025985 None:intergenic 50.0%
CCGCCTGAGTAGAAACAAGA+CGG + chr6_2:80025963-80025982 Msa0930910:intron 50.0%
GAGAAGTGGGTCTACCTTAG+AGG + chr6_2:80026014-80026033 Msa0930910:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG + chr6_2:80026234-80026253 Msa0930910:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG + chr6_2:80026295-80026314 Msa0930910:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + chr6_2:80026315-80026334 Msa0930910:intron 50.0%
GGATGTTGCGTTGGATGAGT+GGG + chr6_2:80026316-80026335 Msa0930910:intron 50.0%
TCTTCTTACCACGGCGTCTA+CGG - chr6_2:80026460-80026479 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr6_2:80026634-80026653 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG - chr6_2:80026638-80026657 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG - chr6_2:80026640-80026659 None:intergenic 50.0%
TTGAACCTTCTGTGCGACTC+CGG + chr6_2:80027007-80027026 Msa0930910:intron 50.0%
GGGAAAAAGTCGCAATGCAG+TGG - chr6_2:80027045-80027064 None:intergenic 50.0%
! GTAACTTGCATGGTGTGTGG+AGG + chr6_2:80027155-80027174 Msa0930910:intron 50.0%
AACTTGCATGGTGTGTGGAG+GGG + chr6_2:80027157-80027176 Msa0930910:intron 50.0%
TGCCCCCATAAAGAACTCTC+AGG - chr6_2:80027348-80027367 None:intergenic 50.0%
GGTGAGAAGGGAATTGGAGA+CGG + chr6_2:80027869-80027888 Msa0930910:CDS 50.0%
GGAGACGGAACTGTTAGCTA+TGG + chr6_2:80027884-80027903 Msa0930910:CDS 50.0%
CGGAACTGTTAGCTATGGGA+TGG + chr6_2:80027889-80027908 Msa0930910:CDS 50.0%
GAATAGAACTTACACCCGGG+GGG - chr6_2:80027964-80027983 None:intergenic 50.0%
CGTCAACCAAGAATCTGGAG+TGG + chr6_2:80028677-80028696 Msa0930910:CDS 50.0%
AAGCTATCTCAGCCTCCTGA+AGG + chr6_2:80028896-80028915 Msa0930910:CDS 50.0%
CCCACTAAGTGAAGTGAGGT+TGG - chr6_2:80029127-80029146 None:intergenic 50.0%
AATGTGTAGCGGTGAGCTAG+GGG + chr6_2:80029707-80029726 Msa0930910:intron 50.0%
TGTTGGAGGAAATGGTGCAC+TGG + chr6_2:80029902-80029921 Msa0930910:intron 50.0%
AAGGATTGACCAAAAGGGGC+TGG + chr6_2:80030012-80030031 Msa0930910:CDS 50.0%
TGCGGACTCTAATTTGGCAG+TGG + chr6_2:80030245-80030264 Msa0930910:three_prime_UTR 50.0%
GCGGACTCTAATTTGGCAGT+GGG + chr6_2:80030246-80030265 Msa0930910:three_prime_UTR 50.0%
TCTGAAGGATCCACCGTCGT+TGG + chr6_2:80024440-80024459 Msa0930910:CDS 55.0%
AGGGTGGGAGAGTTAAGGAG+TGG - chr6_2:80024999-80025018 None:intergenic 55.0%
ACTCCTTAACTCTCCCACCC+TGG + chr6_2:80024998-80025017 Msa0930910:intron 55.0%
GGATATAACGTTGGCCAGGG+TGG - chr6_2:80025015-80025034 None:intergenic 55.0%
CGGGGATATAACGTTGGCCA+GGG - chr6_2:80025018-80025037 None:intergenic 55.0%
TAATGGCAAGGCAGTTGGGC+TGG + chr6_2:80025213-80025232 Msa0930910:intron 55.0%
GTGCTTCTTCTCCACTCGTC+CGG - chr6_2:80025334-80025353 None:intergenic 55.0%
TATGCCTGGGAGGTCGACTA+TGG + chr6_2:80025507-80025526 Msa0930910:intron 55.0%
! GACGCGTGATGGAGCGATAT+CGG + chr6_2:80025548-80025567 Msa0930910:intron 55.0%
! CGTGATGGAGCGATATCGGA+CGG + chr6_2:80025552-80025571 Msa0930910:intron 55.0%
CCTCACCCCTTTCTTCTCCA+GGG - chr6_2:80025656-80025675 None:intergenic 55.0%
TCCTCACCCCTTTCTTCTCC+AGG - chr6_2:80025657-80025676 None:intergenic 55.0%
TTCGACTAGTGTGAGGACGC+AGG + chr6_2:80025717-80025736 Msa0930910:intron 55.0%
ACTAGTGTGAGGACGCAGGA+TGG + chr6_2:80025721-80025740 Msa0930910:intron 55.0%
CTAGTGTGAGGACGCAGGAT+GGG + chr6_2:80025722-80025741 Msa0930910:intron 55.0%
TAGTGTGAGGACGCAGGATG+GGG + chr6_2:80025723-80025742 Msa0930910:intron 55.0%
GCGGAAACCGTACGCTTCTA+AGG - chr6_2:80025947-80025966 None:intergenic 55.0%
CTATCGGACAGCAGTCAGAC+CGG + chr6_2:80026221-80026240 Msa0930910:intron 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + chr6_2:80026251-80026270 Msa0930910:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + chr6_2:80026307-80026326 Msa0930910:intron 55.0%
CTTCTTACCACGGCGTCTAC+GGG - chr6_2:80026459-80026478 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr6_2:80026626-80026645 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr6_2:80026625-80026644 Msa0930910:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr6_2:80026626-80026645 Msa0930910:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr6_2:80026632-80026651 Msa0930910:intron 55.0%
GCGGTGGTACGTGATGTAGT+GGG + chr6_2:80026792-80026811 Msa0930910:intron 55.0%
CGGTGGTACGTGATGTAGTG+GGG + chr6_2:80026793-80026812 Msa0930910:intron 55.0%
AGTCGCAATGCAGTGGGTAC+CGG - chr6_2:80027038-80027057 None:intergenic 55.0%
ACTTGCATGGTGTGTGGAGG+GGG + chr6_2:80027158-80027177 Msa0930910:intron 55.0%
! GTGTGTGGAGGGGGTTGATT+CGG + chr6_2:80027167-80027186 Msa0930910:intron 55.0%
ATTCGGCCACCCTGAGAATC+TGG + chr6_2:80027184-80027203 Msa0930910:intron 55.0%
GAGACACCAGATTCTCAGGG+TGG - chr6_2:80027193-80027212 None:intergenic 55.0%
AGAGCTTGAGCGAGGTGAGA+AGG + chr6_2:80027856-80027875 Msa0930910:CDS 55.0%
GAGCTTGAGCGAGGTGAGAA+GGG + chr6_2:80027857-80027876 Msa0930910:CDS 55.0%
GAGCGAGGTGAGAAGGGAAT+TGG + chr6_2:80027863-80027882 Msa0930910:CDS 55.0%
TGGGACTATTATTGGCCCCC+CGG + chr6_2:80027946-80027965 Msa0930910:CDS 55.0%
GGGTGTGCGCTGTGTGTATT+GGG + chr6_2:80028200-80028219 Msa0930910:intron 55.0%
CAGGAGGCTGAGATAGCTTC+CGG - chr6_2:80028895-80028914 None:intergenic 55.0%
! ATCTCAGCACCAGCCCCTTT+TGG - chr6_2:80030024-80030043 None:intergenic 55.0%
TGGCCAGGGTGGGAGAGTTA+AGG - chr6_2:80025004-80025023 None:intergenic 60.0%
GCGGGGATATAACGTTGGCC+AGG - chr6_2:80025019-80025038 None:intergenic 60.0%
! TCGTCGGATTCAGGAGCACG+AGG + chr6_2:80025165-80025184 Msa0930910:intron 60.0%
CGCAGAAAATGCCGGACGAG+TGG + chr6_2:80025320-80025339 Msa0930910:intron 60.0%
GCTTCCATAGTCGACCTCCC+AGG - chr6_2:80025514-80025533 None:intergenic 60.0%
CCCTGGAGAAGAAAGGGGTG+AGG + chr6_2:80025653-80025672 Msa0930910:intron 60.0%
AGGGGGCTTCGACTAGTGTG+AGG + chr6_2:80025710-80025729 Msa0930910:intron 60.0%
AGGACGCAGGATGGGGATAC+CGG + chr6_2:80025730-80025749 Msa0930910:intron 60.0%
! CTTGCTTGGTGAGTCGAGGG+AGG + chr6_2:80025888-80025907 Msa0930910:intron 60.0%
CGAGGGAGGAGTTAAACGGG+AGG + chr6_2:80025902-80025921 Msa0930910:intron 60.0%
ACGGGAGGCTAGAGACTTGG+AGG + chr6_2:80025917-80025936 Msa0930910:intron 60.0%
CGCGGTGGTACGTGATGTAG+TGG + chr6_2:80026791-80026810 Msa0930910:intron 60.0%
GTCGCAATGCAGTGGGTACC+GGG - chr6_2:80027037-80027056 None:intergenic 60.0%
GGGACTATTATTGGCCCCCC+GGG + chr6_2:80027947-80027966 Msa0930910:CDS 60.0%
GGGGTGTGCGCTGTGTGTAT+TGG + chr6_2:80028199-80028218 Msa0930910:intron 60.0%
TGCGGCCGTAGCACTGTGTG+TGG + chr6_2:80026862-80026881 Msa0930910:intron 65.0%
GGCCGTAGCACTGTGTGTGG+CGG + chr6_2:80026865-80026884 Msa0930910:intron 65.0%
CGCCGCCACACACAGTGCTA+CGG - chr6_2:80026870-80026889 None:intergenic 65.0%
GCTTGCCGGAGTCGCACAGA+AGG - chr6_2:80027015-80027034 None:intergenic 65.0%
GAGAAGGCCCGTAGACGCCG+TGG + chr6_2:80026449-80026468 Msa0930910:intron 70.0%
CTGTGCGACTCCGGCAAGCC+CGG + chr6_2:80027016-80027035 Msa0930910:intron 70.0%
!! GCAGTGGGTACCGGGCTTGC+CGG - chr6_2:80027029-80027048 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 80024297 80030398 80024297 ID=Msa0930910;Name=Msa0930910
chr6_2 mRNA 80024297 80030398 80024297 ID=Msa0930910-mRNA-1;Parent=Msa0930910;Name=Msa0930910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=137|1|1|1|0.75|0.8|5|341|159
chr6_2 exon 80024297 80024461 80024297 ID=Msa0930910-mRNA-1:exon:13978;Parent=Msa0930910-mRNA-1
chr6_2 exon 80027831 80027970 80027831 ID=Msa0930910-mRNA-1:exon:13979;Parent=Msa0930910-mRNA-1
chr6_2 exon 80028573 80028698 80028573 ID=Msa0930910-mRNA-1:exon:13980;Parent=Msa0930910-mRNA-1
chr6_2 exon 80028791 80028917 80028791 ID=Msa0930910-mRNA-1:exon:13981;Parent=Msa0930910-mRNA-1
chr6_2 exon 80029999 80030398 80029999 ID=Msa0930910-mRNA-1:exon:13982;Parent=Msa0930910-mRNA-1
chr6_2 five_prime_UTR 80024297 80024433 80024297 ID=Msa0930910-mRNA-1:five_prime_utr;Parent=Msa0930910-mRNA-1
chr6_2 CDS 80024434 80024461 80024434 ID=Msa0930910-mRNA-1:cds;Parent=Msa0930910-mRNA-1
chr6_2 CDS 80027831 80027970 80027831 ID=Msa0930910-mRNA-1:cds;Parent=Msa0930910-mRNA-1
chr6_2 CDS 80028573 80028698 80028573 ID=Msa0930910-mRNA-1:cds;Parent=Msa0930910-mRNA-1
chr6_2 CDS 80028791 80028917 80028791 ID=Msa0930910-mRNA-1:cds;Parent=Msa0930910-mRNA-1
chr6_2 CDS 80029999 80030057 80029999 ID=Msa0930910-mRNA-1:cds;Parent=Msa0930910-mRNA-1
chr6_2 three_prime_UTR 80030058 80030398 80030058 ID=Msa0930910-mRNA-1:three_prime_utr;Parent=Msa0930910-mRNA-1
Gene Sequence

>Msa0930910

ATGGGTTCTGAAGGATCCACCGTCGTTGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGCGAGGTGAGAAGGGAATTGGAGACGGAACTGTTAGCTATGGGATGGATGATGCTGATGATATATTCATGCAGTCATGGACTGGGACTATTATTGGCCCCCCGGGTACTGTTCATGAAGGTCGTATTTACCAGTTGAAGTTGTTTTGTGGCAAGGATTATCCAGACAATCCACCATCTGTTAGATTTCAGACAAGGATTAACATGACTTGCGTCAACCAAGAATCTGGAGTGGTTGAACCAAATTTGTTTCCCATGCTTGCTAGTTGGAAAAGAGAGTCTACAATGGAAGATATTTTGCTGCAATTGAAGAAAGAAATGATGTCCCCACAAAACCGGAAGCTATCTCAGCCTCCTGAAGGCAATGAAGATGGAAGGATTGACCAAAAGGGGCTGGTGCTGAGATGTTGTATCGTGTAA

Protein sequence

>Msa0930910

MGSEGSTVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIFMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINMTCVNQESGVVEPNLFPMLASWKRESTMEDILLQLKKEMMSPQNRKLSQPPEGNEDGRIDQKGLVLRCCIV*