Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169540 | XP_003625536.2 | 59.091 | 132 | 51 | 1 | 11 | 139 | 12 | 143 | 8.78e-42 | 151 |
| Msa1169540 | XP_003625536.2 | 91.367 | 139 | 12 | 0 | 136 | 274 | 25 | 163 | 1.35e-74 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169540 | sp|F4J4N3|DIR17_ARATH | 51.282 | 117 | 53 | 2 | 1 | 117 | 1 | 113 | 3.75e-31 | 119 |
| Msa1169540 | sp|F4J4N3|DIR17_ARATH | 56.122 | 98 | 32 | 2 | 136 | 231 | 24 | 112 | 7.41e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169540 | G7L0N9 | 59.091 | 132 | 51 | 1 | 11 | 139 | 12 | 143 | 4.19e-42 | 151 |
| Msa1169540 | G7L0N9 | 91.367 | 139 | 12 | 0 | 136 | 274 | 25 | 163 | 6.45e-75 | 235 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610430 | Msa1169540 | 0.802049 | 6.747172e-49 | -8.615850e-47 |
| Msa0663390 | Msa1169540 | 0.801156 | 1.028640e-48 | -8.615850e-47 |
| Msa0698540 | Msa1169540 | 0.800218 | 1.597571e-48 | -8.615850e-47 |
| Msa0220440 | Msa1169540 | 0.814999 | 1.157063e-51 | -8.615850e-47 |
| Msa0228070 | Msa1169540 | 0.804189 | 2.433685e-49 | -8.615850e-47 |
| Msa1023920 | Msa1169540 | 0.807957 | 3.920785e-50 | -8.615850e-47 |
| Msa1078420 | Msa1169540 | 0.872690 | 2.619564e-67 | -8.615850e-47 |
| Msa1107900 | Msa1169540 | 0.805975 | 1.029493e-49 | -8.615850e-47 |
| Msa1169530 | Msa1169540 | 0.893685 | 4.994599e-75 | -8.615850e-47 |
| Msa1169540 | Msa1169550 | 0.828393 | 9.218539e-55 | -8.615850e-47 |
| Msa1169540 | Msa1433390 | 0.801092 | 1.059927e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169540 | MtrunA17_Chr7g0263291 | 91.367 | 139 | 12 | 0 | 136 | 274 | 25 | 163 | 1.24e-78 | 235 |
| Msa1169540 | MtrunA17_Chr7g0263291 | 59.091 | 132 | 51 | 1 | 11 | 139 | 12 | 143 | 8.08e-46 | 151 |
| Msa1169540 | MtrunA17_Chr7g0263301 | 84.496 | 129 | 20 | 0 | 1 | 129 | 1 | 129 | 1.46e-75 | 227 |
| Msa1169540 | MtrunA17_Chr7g0263301 | 64.029 | 139 | 47 | 2 | 136 | 274 | 24 | 159 | 7.96e-46 | 151 |
| Msa1169540 | MtrunA17_Chr7g0263311 | 48.276 | 58 | 29 | 1 | 171 | 227 | 3 | 60 | 5.05e-13 | 62.8 |
| Msa1169540 | MtrunA17_Chr7g0263311 | 46.296 | 54 | 28 | 1 | 61 | 113 | 8 | 61 | 2.24e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169540 | AT3G58090.1 | 51.282 | 117 | 53 | 2 | 1 | 117 | 1 | 113 | 3.81e-32 | 119 |
| Msa1169540 | AT3G58090.1 | 56.122 | 98 | 32 | 2 | 136 | 231 | 24 | 112 | 7.53e-28 | 108 |
Find 85 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATGGAAATTTGGATTT+AGG | 0.164208 | 7_4:+62594022 | Msa1169540:CDS |
| CATCGAACCACATAGGAATT+TGG | 0.220618 | 7_4:+62594577 | Msa1169540:CDS |
| GGTTGAAACTCATGGAAATT+TGG | 0.235619 | 7_4:+62594015 | Msa1169540:CDS |
| AAGAAATCTATTCCTAAATC+TGG | 0.252000 | 7_4:+62594824 | Msa1169540:CDS |
| GCACTACTCTTCCCAGATTT+AGG | 0.253924 | 7_4:-62594836 | None:intergenic |
| GATTTAGGTGATTGGTTTGT+AGG | 0.261826 | 7_4:+62594037 | Msa1169540:CDS |
| CTGCTACCGGATACTATTTC+AGG | 0.274069 | 7_4:-62594515 | None:intergenic |
| TGGGAGAATGGTTTGTGGGG+AGG | 0.323895 | 7_4:+62594603 | Msa1169540:CDS |
| CCGCTACCGGGGACTATTGC+AGG | 0.326023 | 7_4:-62593962 | None:intergenic |
| CATTGGCACAAGGGATTATT+CGG | 0.333125 | 7_4:+62594233 | Msa1169540:CDS |
| GGGAGAATGGTTTGTGGGGA+GGG | 0.334434 | 7_4:+62594604 | Msa1169540:CDS |
| GAAGGAAGTTATTCTTCCTT+TGG | 0.354648 | 7_4:+62594189 | Msa1169540:CDS |
| ATCGAACCACATAGGAATTT+GGG | 0.364456 | 7_4:+62594578 | Msa1169540:CDS |
| GGCTTGGGAGAATGGTTTGT+GGG | 0.370784 | 7_4:+62594599 | Msa1169540:CDS |
| ACCGAGTATGACAAAGAATC+TGG | 0.379264 | 7_4:+62594671 | Msa1169540:CDS |
| ATCAACTATGACAAAGAATC+TGG | 0.386890 | 7_4:+62594109 | Msa1169540:CDS |
| AGACTGCTATTATAATTAAC+GGG | 0.389962 | 7_4:+62593936 | Msa1169540:CDS |
| ATTTAGGTGATTGGTTTGTA+GGG | 0.397780 | 7_4:+62594038 | Msa1169540:CDS |
| GGACGGGACAACACCGCTAC+CGG | 0.402287 | 7_4:-62593975 | None:intergenic |
| GGAATTTGGGCTTGGGAGAA+TGG | 0.402637 | 7_4:+62594591 | Msa1169540:CDS |
| AGGTGATTGGTTTGTAGGGA+GGG | 0.410715 | 7_4:+62594042 | Msa1169540:CDS |
| ACCACATAGGAATTTGGGCT+TGG | 0.411883 | 7_4:+62594583 | Msa1169540:CDS |
| GGGCTTGGGAGAATGGTTTG+TGG | 0.416018 | 7_4:+62594598 | Msa1169540:CDS |
| GAAATTTGGATTTAGGTGAT+TGG | 0.422649 | 7_4:+62594029 | Msa1169540:CDS |
| CATTGGCGCAGAGGGTTGTT+CGG | 0.423791 | 7_4:+62594795 | Msa1169540:CDS |
| GAGACTGCTATTATAATTAA+CGG | 0.430695 | 7_4:+62593935 | Msa1169540:CDS |
| ATCAAAACAAAGAGAACAAA+AGG | 0.438164 | 7_4:+62594878 | Msa1169540:CDS |
| GTGATTCTGAAGATCTTGAT+TGG | 0.441563 | 7_4:+62594720 | Msa1169540:CDS |
| CTTAGAAGATCTTGATTGGC+AGG | 0.441727 | 7_4:+62594162 | Msa1169540:CDS |
| GTGACTTAGAAGATCTTGAT+TGG | 0.441734 | 7_4:+62594158 | Msa1169540:CDS |
| GACGGGACAACACCGCTACC+GGG | 0.442477 | 7_4:-62593974 | None:intergenic |
| GACGGCGCTGCTGCTGCTAC+CGG | 0.450572 | 7_4:-62594528 | None:intergenic |
| TCTTGATTGGCCGGAGTTGA+AGG | 0.457279 | 7_4:+62594733 | Msa1169540:CDS |
| TCTTGATTGGCAGGAGTTGA+AGG | 0.457490 | 7_4:+62594171 | Msa1169540:CDS |
| GAAGTTCTCAGTCCTTTAGA+TGG | 0.458489 | 7_4:+62594755 | Msa1169540:CDS |
| CCCAGATTCTTTGTCATACT+CGG | 0.473382 | 7_4:-62594672 | None:intergenic |
| AGCATTGCTGCTGGAAGGGA+CGG | 0.473470 | 7_4:-62594546 | None:intergenic |
| TTCTGAAGATCTTGATTGGC+CGG | 0.482353 | 7_4:+62594724 | Msa1169540:CDS |
| TAGGTGATTGGTTTGTAGGG+AGG | 0.483343 | 7_4:+62594041 | Msa1169540:CDS |
| GCTTGGGAGAATGGTTTGTG+GGG | 0.486598 | 7_4:+62594600 | Msa1169540:CDS |
| CCACATAGGAATTTGGGCTT+GGG | 0.489077 | 7_4:+62594584 | Msa1169540:CDS |
| AGTGAAATTCCACCATCTAA+AGG | 0.490197 | 7_4:-62594767 | None:intergenic |
| AACCACATTTGAAGCATCAC+GGG | 0.502502 | 7_4:-62593996 | None:intergenic |
| AGAAATCTATTCCTAAATCT+GGG | 0.513142 | 7_4:+62594825 | Msa1169540:CDS |
| TCAAATGTGGTTGAAACTCA+TGG | 0.517627 | 7_4:+62594007 | Msa1169540:CDS |
| CAAAGAATCTGGATGGTACA+AGG | 0.519054 | 7_4:+62594120 | Msa1169540:CDS |
| GATACTCAAAGCATTGCTGC+TGG | 0.527679 | 7_4:-62594555 | None:intergenic |
| CTCAAAGCATTGCTGCTGGA+AGG | 0.529613 | 7_4:-62594551 | None:intergenic |
| GTCAGACAAAGGAAATAAGC+AGG | 0.530846 | 7_4:+62593871 | Msa1169540:CDS |
| TACAATTTCTCTCAAGACAT+TGG | 0.533068 | 7_4:+62594216 | Msa1169540:CDS |
| GTTTATGGGACGTTATTACT+CGG | 0.537141 | 7_4:+62594640 | Msa1169540:CDS |
| CCTGCAATAGTCCCCGGTAG+CGG | 0.537446 | 7_4:+62593962 | Msa1169540:CDS |
| CTCTCAAGACATTGGCACAA+GGG | 0.539420 | 7_4:+62594224 | Msa1169540:CDS |
| CAACCACATTTGAAGCATCA+CGG | 0.541059 | 7_4:-62593997 | None:intergenic |
| ACTCAAGACATTGGCGCAGA+GGG | 0.544285 | 7_4:+62594787 | Msa1169540:CDS |
| CTGAGAACTTCCTTCAACTC+CGG | 0.550027 | 7_4:-62594743 | None:intergenic |
| TCAAAGCATTGCTGCTGGAA+GGG | 0.554064 | 7_4:-62594550 | None:intergenic |
| TGGAATTTCACTCAAGACAT+TGG | 0.557096 | 7_4:+62594778 | Msa1169540:CDS |
| GTTCAGGGAAAGGTATTACT+CGG | 0.560427 | 7_4:+62594078 | Msa1169540:CDS |
| CCCAAGCCCAAATTCCTATG+TGG | 0.565828 | 7_4:-62594584 | None:intergenic |
| ATTATAATAGCAGTCTCTCC+AGG | 0.565936 | 7_4:-62593929 | None:intergenic |
| CACCGTCTTCATACTCAACA+TGG | 0.568627 | 7_4:-62594700 | None:intergenic |
| TTCAAAATGGAGTCAGACAA+AGG | 0.569633 | 7_4:+62593860 | None:intergenic |
| CACTCAAGACATTGGCGCAG+AGG | 0.573004 | 7_4:+62594786 | Msa1169540:CDS |
| ACGGGACAACACCGCTACCG+GGG | 0.573233 | 7_4:-62593973 | None:intergenic |
| TTTATGGGACGTTATTACTC+GGG | 0.573677 | 7_4:+62594641 | Msa1169540:CDS |
| CATTTGAAGCATCACGGGAC+GGG | 0.579376 | 7_4:-62593991 | None:intergenic |
| GTTCTCAGTCCTTTAGATGG+TGG | 0.581755 | 7_4:+62594758 | Msa1169540:CDS |
| GAGCCTGCGACTGTAATTGA+CGG | 0.584299 | 7_4:+62594488 | Msa1169540:intron |
| GGAGTGCCTGAAATAGTATC+CGG | 0.596939 | 7_4:+62594509 | Msa1169540:CDS |
| CCGAGTATGACAAAGAATCT+GGG | 0.597649 | 7_4:+62594672 | Msa1169540:CDS |
| ACTCCGTCAATTACAGTCGC+AGG | 0.599135 | 7_4:-62594491 | None:intergenic |
| AGAGAAATTGTAGCATCCAA+AGG | 0.602653 | 7_4:-62594205 | None:intergenic |
| TACAAGGTTGAATATGAAGA+TGG | 0.609004 | 7_4:+62594136 | Msa1169540:CDS |
| ACAGGGATATATGAGATACC+TGG | 0.611070 | 7_4:+62593911 | Msa1169540:CDS |
| ACATTTGAAGCATCACGGGA+CGG | 0.616060 | 7_4:-62593992 | None:intergenic |
| TGAGTATCATCGAACCACAT+AGG | 0.617574 | 7_4:+62594570 | Msa1169540:CDS |
| TCTCTCAAGACATTGGCACA+AGG | 0.619081 | 7_4:+62594223 | Msa1169540:CDS |
| ACTATGACAAAGAATCTGGA+TGG | 0.632963 | 7_4:+62594113 | Msa1169540:CDS |
| TTCAGGGAAAGGTATTACTC+GGG | 0.637808 | 7_4:+62594079 | Msa1169540:CDS |
| GGGGTGCCTGCAATAGTCCC+CGG | 0.660797 | 7_4:+62593956 | Msa1169540:CDS |
| GTCCCGTGATGCTTCAAATG+TGG | 0.666358 | 7_4:+62593994 | Msa1169540:CDS |
| TACCATGTTGAGTATGAAGA+CGG | 0.707224 | 7_4:+62594698 | Msa1169540:CDS |
| GACTGCTATTATAATTAACG+GGG | 0.727072 | 7_4:+62593937 | Msa1169540:CDS |
| AGTATGACAAAGAATCTGGG+TGG | 0.768571 | 7_4:+62594675 | Msa1169540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | NNNNNNNNNNATGATTTTCC+TGG | + | chr7_4:62594464-62594483 | Msa1169540:intron | 15.0% |
| !!! | NNNNNNNNNNATGATTTTCC+TGG | + | chr7_4:62594464-62594483 | Msa1169540:intron | 15.0% |
| !!! | GTTTTCTTTGTTTTGATTTT+GGG | - | chr7_4:62594313-62594332 | None:intergenic | 20.0% |
| !!! | TGTTTTCTTTGTTTTGATTT+TGG | - | chr7_4:62594314-62594333 | None:intergenic | 20.0% |
| !! | GATGTTCAAAAATTGTTTAT+GGG | + | chr7_4:62594626-62594645 | Msa1169540:CDS | 20.0% |
| !!! | GTTTTCTTTGTTTTGATTTT+GGG | - | chr7_4:62594313-62594332 | None:intergenic | 20.0% |
| !!! | TGTTTTCTTTGTTTTGATTT+TGG | - | chr7_4:62594314-62594333 | None:intergenic | 20.0% |
| !! | GATGTTCAAAAATTGTTTAT+GGG | + | chr7_4:62594626-62594645 | Msa1169540:CDS | 20.0% |
| ! | GAGACTGCTATTATAATTAA+CGG | + | chr7_4:62593935-62593954 | Msa1169540:CDS | 25.0% |
| ! | AGACTGCTATTATAATTAAC+GGG | + | chr7_4:62593936-62593955 | Msa1169540:CDS | 25.0% |
| ! | GGATGTTCAAAAATTGTTTA+TGG | + | chr7_4:62594625-62594644 | Msa1169540:CDS | 25.0% |
| ! | AAGAAATCTATTCCTAAATC+TGG | + | chr7_4:62594824-62594843 | Msa1169540:CDS | 25.0% |
| ! | AGAAATCTATTCCTAAATCT+GGG | + | chr7_4:62594825-62594844 | Msa1169540:CDS | 25.0% |
| ! | ATCAAAACAAAGAGAACAAA+AGG | + | chr7_4:62594878-62594897 | Msa1169540:CDS | 25.0% |
| ! | GAGACTGCTATTATAATTAA+CGG | + | chr7_4:62593935-62593954 | Msa1169540:CDS | 25.0% |
| ! | AGACTGCTATTATAATTAAC+GGG | + | chr7_4:62593936-62593955 | Msa1169540:CDS | 25.0% |
| ! | GGATGTTCAAAAATTGTTTA+TGG | + | chr7_4:62594625-62594644 | Msa1169540:CDS | 25.0% |
| ! | AAGAAATCTATTCCTAAATC+TGG | + | chr7_4:62594824-62594843 | Msa1169540:CDS | 25.0% |
| ! | AGAAATCTATTCCTAAATCT+GGG | + | chr7_4:62594825-62594844 | Msa1169540:CDS | 25.0% |
| ! | ATCAAAACAAAGAGAACAAA+AGG | + | chr7_4:62594878-62594897 | Msa1169540:CDS | 25.0% |
| ! | AATCAAATGCTTTTGCAACA+GGG | + | chr7_4:62593894-62593913 | Msa1169540:CDS | 30.0% |
| GACTGCTATTATAATTAACG+GGG | + | chr7_4:62593937-62593956 | Msa1169540:CDS | 30.0% | |
| ACTCATGGAAATTTGGATTT+AGG | + | chr7_4:62594022-62594041 | Msa1169540:CDS | 30.0% | |
| GAAATTTGGATTTAGGTGAT+TGG | + | chr7_4:62594029-62594048 | Msa1169540:CDS | 30.0% | |
| !! | ATTTAGGTGATTGGTTTGTA+GGG | + | chr7_4:62594038-62594057 | Msa1169540:CDS | 30.0% |
| ATCAACTATGACAAAGAATC+TGG | + | chr7_4:62594109-62594128 | Msa1169540:CDS | 30.0% | |
| TACAAGGTTGAATATGAAGA+TGG | + | chr7_4:62594136-62594155 | Msa1169540:CDS | 30.0% | |
| TACAATTTCTCTCAAGACAT+TGG | + | chr7_4:62594216-62594235 | Msa1169540:CDS | 30.0% | |
| ATTCGGAAAAATAAGAAACC+TGG | + | chr7_4:62594250-62594269 | Msa1169540:CDS | 30.0% | |
| !!! | GTTCTCTTTGTTTTGATTTG+AGG | - | chr7_4:62594875-62594894 | None:intergenic | 30.0% |
| ! | AATCAAATGCTTTTGCAACA+GGG | + | chr7_4:62593894-62593913 | Msa1169540:CDS | 30.0% |
| GACTGCTATTATAATTAACG+GGG | + | chr7_4:62593937-62593956 | Msa1169540:CDS | 30.0% | |
| ACTCATGGAAATTTGGATTT+AGG | + | chr7_4:62594022-62594041 | Msa1169540:CDS | 30.0% | |
| GAAATTTGGATTTAGGTGAT+TGG | + | chr7_4:62594029-62594048 | Msa1169540:CDS | 30.0% | |
| !! | ATTTAGGTGATTGGTTTGTA+GGG | + | chr7_4:62594038-62594057 | Msa1169540:CDS | 30.0% |
| ATCAACTATGACAAAGAATC+TGG | + | chr7_4:62594109-62594128 | Msa1169540:CDS | 30.0% | |
| TACAAGGTTGAATATGAAGA+TGG | + | chr7_4:62594136-62594155 | Msa1169540:CDS | 30.0% | |
| TACAATTTCTCTCAAGACAT+TGG | + | chr7_4:62594216-62594235 | Msa1169540:CDS | 30.0% | |
| ATTCGGAAAAATAAGAAACC+TGG | + | chr7_4:62594250-62594269 | Msa1169540:CDS | 30.0% | |
| !!! | GTTCTCTTTGTTTTGATTTG+AGG | - | chr7_4:62594875-62594894 | None:intergenic | 30.0% |
| ! | GAATCAAATGCTTTTGCAAC+AGG | + | chr7_4:62593893-62593912 | Msa1169540:CDS | 35.0% |
| ATTATAATAGCAGTCTCTCC+AGG | - | chr7_4:62593932-62593951 | None:intergenic | 35.0% | |
| TCAAATGTGGTTGAAACTCA+TGG | + | chr7_4:62594007-62594026 | Msa1169540:CDS | 35.0% | |
| GGTTGAAACTCATGGAAATT+TGG | + | chr7_4:62594015-62594034 | Msa1169540:CDS | 35.0% | |
| !! | GATTTAGGTGATTGGTTTGT+AGG | + | chr7_4:62594037-62594056 | Msa1169540:CDS | 35.0% |
| GGATGTTCAAAAACTGTTCA+GGG | + | chr7_4:62594063-62594082 | Msa1169540:CDS | 35.0% | |
| TTCAAAAACTGTTCAGGGAA+AGG | + | chr7_4:62594068-62594087 | Msa1169540:CDS | 35.0% | |
| ACTATGACAAAGAATCTGGA+TGG | + | chr7_4:62594113-62594132 | Msa1169540:CDS | 35.0% | |
| GTGACTTAGAAGATCTTGAT+TGG | + | chr7_4:62594158-62594177 | Msa1169540:CDS | 35.0% | |
| GAAGGAAGTTATTCTTCCTT+TGG | + | chr7_4:62594189-62594208 | Msa1169540:CDS | 35.0% | |
| AGAGAAATTGTAGCATCCAA+AGG | - | chr7_4:62594208-62594227 | None:intergenic | 35.0% | |
| AAGAAACCTGGTAGTAAATC+TGG | + | chr7_4:62594262-62594281 | Msa1169540:intron | 35.0% | |
| AGAAACCTGGTAGTAAATCT+GGG | + | chr7_4:62594263-62594282 | Msa1169540:intron | 35.0% | |
| ! | AAATCTGGGAAGAAAAGTGT+TGG | + | chr7_4:62594277-62594296 | Msa1169540:intron | 35.0% |
| ATCGAACCACATAGGAATTT+GGG | + | chr7_4:62594578-62594597 | Msa1169540:CDS | 35.0% | |
| GTTTATGGGACGTTATTACT+CGG | + | chr7_4:62594640-62594659 | Msa1169540:CDS | 35.0% | |
| TTTATGGGACGTTATTACTC+GGG | + | chr7_4:62594641-62594660 | Msa1169540:CDS | 35.0% | |
| TACCATGTTGAGTATGAAGA+CGG | + | chr7_4:62594698-62594717 | Msa1169540:CDS | 35.0% | |
| ! | GTGATTCTGAAGATCTTGAT+TGG | + | chr7_4:62594720-62594739 | Msa1169540:CDS | 35.0% |
| AGTGAAATTCCACCATCTAA+AGG | - | chr7_4:62594770-62594789 | None:intergenic | 35.0% | |
| TGGAATTTCACTCAAGACAT+TGG | + | chr7_4:62594778-62594797 | Msa1169540:CDS | 35.0% | |
| ! | GAATCAAATGCTTTTGCAAC+AGG | + | chr7_4:62593893-62593912 | Msa1169540:CDS | 35.0% |
| ATTATAATAGCAGTCTCTCC+AGG | - | chr7_4:62593932-62593951 | None:intergenic | 35.0% | |
| TCAAATGTGGTTGAAACTCA+TGG | + | chr7_4:62594007-62594026 | Msa1169540:CDS | 35.0% | |
| GGTTGAAACTCATGGAAATT+TGG | + | chr7_4:62594015-62594034 | Msa1169540:CDS | 35.0% | |
| !! | GATTTAGGTGATTGGTTTGT+AGG | + | chr7_4:62594037-62594056 | Msa1169540:CDS | 35.0% |
| GGATGTTCAAAAACTGTTCA+GGG | + | chr7_4:62594063-62594082 | Msa1169540:CDS | 35.0% | |
| TTCAAAAACTGTTCAGGGAA+AGG | + | chr7_4:62594068-62594087 | Msa1169540:CDS | 35.0% | |
| ACTATGACAAAGAATCTGGA+TGG | + | chr7_4:62594113-62594132 | Msa1169540:CDS | 35.0% | |
| GTGACTTAGAAGATCTTGAT+TGG | + | chr7_4:62594158-62594177 | Msa1169540:CDS | 35.0% | |
| GAAGGAAGTTATTCTTCCTT+TGG | + | chr7_4:62594189-62594208 | Msa1169540:CDS | 35.0% | |
| AGAGAAATTGTAGCATCCAA+AGG | - | chr7_4:62594208-62594227 | None:intergenic | 35.0% | |
| AAGAAACCTGGTAGTAAATC+TGG | + | chr7_4:62594262-62594281 | Msa1169540:intron | 35.0% | |
| AGAAACCTGGTAGTAAATCT+GGG | + | chr7_4:62594263-62594282 | Msa1169540:intron | 35.0% | |
| ! | AAATCTGGGAAGAAAAGTGT+TGG | + | chr7_4:62594277-62594296 | Msa1169540:intron | 35.0% |
| ATCGAACCACATAGGAATTT+GGG | + | chr7_4:62594578-62594597 | Msa1169540:CDS | 35.0% | |
| GTTTATGGGACGTTATTACT+CGG | + | chr7_4:62594640-62594659 | Msa1169540:CDS | 35.0% | |
| TTTATGGGACGTTATTACTC+GGG | + | chr7_4:62594641-62594660 | Msa1169540:CDS | 35.0% | |
| TACCATGTTGAGTATGAAGA+CGG | + | chr7_4:62594698-62594717 | Msa1169540:CDS | 35.0% | |
| ! | GTGATTCTGAAGATCTTGAT+TGG | + | chr7_4:62594720-62594739 | Msa1169540:CDS | 35.0% |
| AGTGAAATTCCACCATCTAA+AGG | - | chr7_4:62594770-62594789 | None:intergenic | 35.0% | |
| TGGAATTTCACTCAAGACAT+TGG | + | chr7_4:62594778-62594797 | Msa1169540:CDS | 35.0% | |
| GTCAGACAAAGGAAATAAGC+AGG | + | chr7_4:62593871-62593890 | Msa1169540:CDS | 40.0% | |
| ACAGGGATATATGAGATACC+TGG | + | chr7_4:62593911-62593930 | Msa1169540:CDS | 40.0% | |
| ! | AACCACATTTGAAGCATCAC+GGG | - | chr7_4:62593999-62594018 | None:intergenic | 40.0% |
| ! | CAACCACATTTGAAGCATCA+CGG | - | chr7_4:62594000-62594019 | None:intergenic | 40.0% |
| GGGATGTTCAAAAACTGTTC+AGG | + | chr7_4:62594062-62594081 | Msa1169540:CDS | 40.0% | |
| !! | GTTCAGGGAAAGGTATTACT+CGG | + | chr7_4:62594078-62594097 | Msa1169540:CDS | 40.0% |
| !! | TTCAGGGAAAGGTATTACTC+GGG | + | chr7_4:62594079-62594098 | Msa1169540:CDS | 40.0% |
| CAAAGAATCTGGATGGTACA+AGG | + | chr7_4:62594120-62594139 | Msa1169540:CDS | 40.0% | |
| CTTAGAAGATCTTGATTGGC+AGG | + | chr7_4:62594162-62594181 | Msa1169540:CDS | 40.0% | |
| CATTGGCACAAGGGATTATT+CGG | + | chr7_4:62594233-62594252 | Msa1169540:CDS | 40.0% | |
| TTCTTCCCAGATTTACTACC+AGG | - | chr7_4:62594271-62594290 | None:intergenic | 40.0% | |
| TGAGTATCATCGAACCACAT+AGG | + | chr7_4:62594570-62594589 | Msa1169540:CDS | 40.0% | |
| CATCGAACCACATAGGAATT+TGG | + | chr7_4:62594577-62594596 | Msa1169540:CDS | 40.0% | |
| ACCGAGTATGACAAAGAATC+TGG | + | chr7_4:62594671-62594690 | Msa1169540:CDS | 40.0% | |
| CCCAGATTCTTTGTCATACT+CGG | - | chr7_4:62594675-62594694 | None:intergenic | 40.0% | |
| CCGAGTATGACAAAGAATCT+GGG | + | chr7_4:62594672-62594691 | Msa1169540:CDS | 40.0% | |
| AGTATGACAAAGAATCTGGG+TGG | + | chr7_4:62594675-62594694 | Msa1169540:CDS | 40.0% | |
| ! | TTCTGAAGATCTTGATTGGC+CGG | + | chr7_4:62594724-62594743 | Msa1169540:CDS | 40.0% |
| GAAGTTCTCAGTCCTTTAGA+TGG | + | chr7_4:62594755-62594774 | Msa1169540:CDS | 40.0% | |
| GTCAGACAAAGGAAATAAGC+AGG | + | chr7_4:62593871-62593890 | Msa1169540:CDS | 40.0% | |
| ACAGGGATATATGAGATACC+TGG | + | chr7_4:62593911-62593930 | Msa1169540:CDS | 40.0% | |
| ! | AACCACATTTGAAGCATCAC+GGG | - | chr7_4:62593999-62594018 | None:intergenic | 40.0% |
| ! | CAACCACATTTGAAGCATCA+CGG | - | chr7_4:62594000-62594019 | None:intergenic | 40.0% |
| GGGATGTTCAAAAACTGTTC+AGG | + | chr7_4:62594062-62594081 | Msa1169540:CDS | 40.0% | |
| !! | GTTCAGGGAAAGGTATTACT+CGG | + | chr7_4:62594078-62594097 | Msa1169540:CDS | 40.0% |
| !! | TTCAGGGAAAGGTATTACTC+GGG | + | chr7_4:62594079-62594098 | Msa1169540:CDS | 40.0% |
| CAAAGAATCTGGATGGTACA+AGG | + | chr7_4:62594120-62594139 | Msa1169540:CDS | 40.0% | |
| CTTAGAAGATCTTGATTGGC+AGG | + | chr7_4:62594162-62594181 | Msa1169540:CDS | 40.0% | |
| CATTGGCACAAGGGATTATT+CGG | + | chr7_4:62594233-62594252 | Msa1169540:CDS | 40.0% | |
| TTCTTCCCAGATTTACTACC+AGG | - | chr7_4:62594271-62594290 | None:intergenic | 40.0% | |
| TGAGTATCATCGAACCACAT+AGG | + | chr7_4:62594570-62594589 | Msa1169540:CDS | 40.0% | |
| CATCGAACCACATAGGAATT+TGG | + | chr7_4:62594577-62594596 | Msa1169540:CDS | 40.0% | |
| ACCGAGTATGACAAAGAATC+TGG | + | chr7_4:62594671-62594690 | Msa1169540:CDS | 40.0% | |
| CCCAGATTCTTTGTCATACT+CGG | - | chr7_4:62594675-62594694 | None:intergenic | 40.0% | |
| CCGAGTATGACAAAGAATCT+GGG | + | chr7_4:62594672-62594691 | Msa1169540:CDS | 40.0% | |
| AGTATGACAAAGAATCTGGG+TGG | + | chr7_4:62594675-62594694 | Msa1169540:CDS | 40.0% | |
| ! | TTCTGAAGATCTTGATTGGC+CGG | + | chr7_4:62594724-62594743 | Msa1169540:CDS | 40.0% |
| GAAGTTCTCAGTCCTTTAGA+TGG | + | chr7_4:62594755-62594774 | Msa1169540:CDS | 40.0% | |
| ! | ACATTTGAAGCATCACGGGA+CGG | - | chr7_4:62593995-62594014 | None:intergenic | 45.0% |
| !! | TAGGTGATTGGTTTGTAGGG+AGG | + | chr7_4:62594041-62594060 | Msa1169540:CDS | 45.0% |
| !! | AGGTGATTGGTTTGTAGGGA+GGG | + | chr7_4:62594042-62594061 | Msa1169540:CDS | 45.0% |
| TCTTGATTGGCAGGAGTTGA+AGG | + | chr7_4:62594171-62594190 | Msa1169540:CDS | 45.0% | |
| TCTCTCAAGACATTGGCACA+AGG | + | chr7_4:62594223-62594242 | Msa1169540:CDS | 45.0% | |
| CTCTCAAGACATTGGCACAA+GGG | + | chr7_4:62594224-62594243 | Msa1169540:CDS | 45.0% | |
| ! | GGAGTGCCTGAAATAGTATC+CGG | + | chr7_4:62594509-62594528 | Msa1169540:CDS | 45.0% |
| CTGCTACCGGATACTATTTC+AGG | - | chr7_4:62594518-62594537 | None:intergenic | 45.0% | |
| !! | TCAAAGCATTGCTGCTGGAA+GGG | - | chr7_4:62594553-62594572 | None:intergenic | 45.0% |
| !! | GATACTCAAAGCATTGCTGC+TGG | - | chr7_4:62594558-62594577 | None:intergenic | 45.0% |
| ACCACATAGGAATTTGGGCT+TGG | + | chr7_4:62594583-62594602 | Msa1169540:CDS | 45.0% | |
| CCACATAGGAATTTGGGCTT+GGG | + | chr7_4:62594584-62594603 | Msa1169540:CDS | 45.0% | |
| CACCGTCTTCATACTCAACA+TGG | - | chr7_4:62594703-62594722 | None:intergenic | 45.0% | |
| CTGAGAACTTCCTTCAACTC+CGG | - | chr7_4:62594746-62594765 | None:intergenic | 45.0% | |
| GTTCTCAGTCCTTTAGATGG+TGG | + | chr7_4:62594758-62594777 | Msa1169540:CDS | 45.0% | |
| GCACTACTCTTCCCAGATTT+AGG | - | chr7_4:62594839-62594858 | None:intergenic | 45.0% | |
| ! | ACATTTGAAGCATCACGGGA+CGG | - | chr7_4:62593995-62594014 | None:intergenic | 45.0% |
| !! | TAGGTGATTGGTTTGTAGGG+AGG | + | chr7_4:62594041-62594060 | Msa1169540:CDS | 45.0% |
| !! | AGGTGATTGGTTTGTAGGGA+GGG | + | chr7_4:62594042-62594061 | Msa1169540:CDS | 45.0% |
| TCTTGATTGGCAGGAGTTGA+AGG | + | chr7_4:62594171-62594190 | Msa1169540:CDS | 45.0% | |
| TCTCTCAAGACATTGGCACA+AGG | + | chr7_4:62594223-62594242 | Msa1169540:CDS | 45.0% | |
| CTCTCAAGACATTGGCACAA+GGG | + | chr7_4:62594224-62594243 | Msa1169540:CDS | 45.0% | |
| ! | GGAGTGCCTGAAATAGTATC+CGG | + | chr7_4:62594509-62594528 | Msa1169540:CDS | 45.0% |
| CTGCTACCGGATACTATTTC+AGG | - | chr7_4:62594518-62594537 | None:intergenic | 45.0% | |
| !! | TCAAAGCATTGCTGCTGGAA+GGG | - | chr7_4:62594553-62594572 | None:intergenic | 45.0% |
| !! | GATACTCAAAGCATTGCTGC+TGG | - | chr7_4:62594558-62594577 | None:intergenic | 45.0% |
| ACCACATAGGAATTTGGGCT+TGG | + | chr7_4:62594583-62594602 | Msa1169540:CDS | 45.0% | |
| CCACATAGGAATTTGGGCTT+GGG | + | chr7_4:62594584-62594603 | Msa1169540:CDS | 45.0% | |
| CACCGTCTTCATACTCAACA+TGG | - | chr7_4:62594703-62594722 | None:intergenic | 45.0% | |
| CTGAGAACTTCCTTCAACTC+CGG | - | chr7_4:62594746-62594765 | None:intergenic | 45.0% | |
| GTTCTCAGTCCTTTAGATGG+TGG | + | chr7_4:62594758-62594777 | Msa1169540:CDS | 45.0% | |
| GCACTACTCTTCCCAGATTT+AGG | - | chr7_4:62594839-62594858 | None:intergenic | 45.0% | |
| ! | CATTTGAAGCATCACGGGAC+GGG | - | chr7_4:62593994-62594013 | None:intergenic | 50.0% |
| GTCCCGTGATGCTTCAAATG+TGG | + | chr7_4:62593994-62594013 | Msa1169540:CDS | 50.0% | |
| GAGCCTGCGACTGTAATTGA+CGG | + | chr7_4:62594488-62594507 | Msa1169540:intron | 50.0% | |
| ACTCCGTCAATTACAGTCGC+AGG | - | chr7_4:62594494-62594513 | None:intergenic | 50.0% | |
| !! | CTCAAAGCATTGCTGCTGGA+AGG | - | chr7_4:62594554-62594573 | None:intergenic | 50.0% |
| CCCAAGCCCAAATTCCTATG+TGG | - | chr7_4:62594587-62594606 | None:intergenic | 50.0% | |
| GGAATTTGGGCTTGGGAGAA+TGG | + | chr7_4:62594591-62594610 | Msa1169540:CDS | 50.0% | |
| ! | GGCTTGGGAGAATGGTTTGT+GGG | + | chr7_4:62594599-62594618 | Msa1169540:CDS | 50.0% |
| ! | GCTTGGGAGAATGGTTTGTG+GGG | + | chr7_4:62594600-62594619 | Msa1169540:CDS | 50.0% |
| ! | TCTTGATTGGCCGGAGTTGA+AGG | + | chr7_4:62594733-62594752 | Msa1169540:CDS | 50.0% |
| ACTCAAGACATTGGCGCAGA+GGG | + | chr7_4:62594787-62594806 | Msa1169540:CDS | 50.0% | |
| ! | CATTTGAAGCATCACGGGAC+GGG | - | chr7_4:62593994-62594013 | None:intergenic | 50.0% |
| GTCCCGTGATGCTTCAAATG+TGG | + | chr7_4:62593994-62594013 | Msa1169540:CDS | 50.0% | |
| GAGCCTGCGACTGTAATTGA+CGG | + | chr7_4:62594488-62594507 | Msa1169540:intron | 50.0% | |
| ACTCCGTCAATTACAGTCGC+AGG | - | chr7_4:62594494-62594513 | None:intergenic | 50.0% | |
| !! | CTCAAAGCATTGCTGCTGGA+AGG | - | chr7_4:62594554-62594573 | None:intergenic | 50.0% |
| CCCAAGCCCAAATTCCTATG+TGG | - | chr7_4:62594587-62594606 | None:intergenic | 50.0% | |
| GGAATTTGGGCTTGGGAGAA+TGG | + | chr7_4:62594591-62594610 | Msa1169540:CDS | 50.0% | |
| ! | GGCTTGGGAGAATGGTTTGT+GGG | + | chr7_4:62594599-62594618 | Msa1169540:CDS | 50.0% |
| ! | GCTTGGGAGAATGGTTTGTG+GGG | + | chr7_4:62594600-62594619 | Msa1169540:CDS | 50.0% |
| ! | TCTTGATTGGCCGGAGTTGA+AGG | + | chr7_4:62594733-62594752 | Msa1169540:CDS | 50.0% |
| ACTCAAGACATTGGCGCAGA+GGG | + | chr7_4:62594787-62594806 | Msa1169540:CDS | 50.0% | |
| ATTACAGTCGCAGGCTCTCC+AGG | - | chr7_4:62594485-62594504 | None:intergenic | 55.0% | |
| AGCATTGCTGCTGGAAGGGA+CGG | - | chr7_4:62594549-62594568 | None:intergenic | 55.0% | |
| GGGCTTGGGAGAATGGTTTG+TGG | + | chr7_4:62594598-62594617 | Msa1169540:CDS | 55.0% | |
| ! | TGGGAGAATGGTTTGTGGGG+AGG | + | chr7_4:62594603-62594622 | Msa1169540:CDS | 55.0% |
| ! | GGGAGAATGGTTTGTGGGGA+GGG | + | chr7_4:62594604-62594623 | Msa1169540:CDS | 55.0% |
| CACTCAAGACATTGGCGCAG+AGG | + | chr7_4:62594786-62594805 | Msa1169540:CDS | 55.0% | |
| CATTGGCGCAGAGGGTTGTT+CGG | + | chr7_4:62594795-62594814 | Msa1169540:CDS | 55.0% | |
| ATTACAGTCGCAGGCTCTCC+AGG | - | chr7_4:62594485-62594504 | None:intergenic | 55.0% | |
| AGCATTGCTGCTGGAAGGGA+CGG | - | chr7_4:62594549-62594568 | None:intergenic | 55.0% | |
| GGGCTTGGGAGAATGGTTTG+TGG | + | chr7_4:62594598-62594617 | Msa1169540:CDS | 55.0% | |
| ! | TGGGAGAATGGTTTGTGGGG+AGG | + | chr7_4:62594603-62594622 | Msa1169540:CDS | 55.0% |
| ! | GGGAGAATGGTTTGTGGGGA+GGG | + | chr7_4:62594604-62594623 | Msa1169540:CDS | 55.0% |
| CACTCAAGACATTGGCGCAG+AGG | + | chr7_4:62594786-62594805 | Msa1169540:CDS | 55.0% | |
| CATTGGCGCAGAGGGTTGTT+CGG | + | chr7_4:62594795-62594814 | Msa1169540:CDS | 55.0% | |
| CCTGCAATAGTCCCCGGTAG+CGG | + | chr7_4:62593962-62593981 | Msa1169540:CDS | 60.0% | |
| CCTGCAATAGTCCCCGGTAG+CGG | + | chr7_4:62593962-62593981 | Msa1169540:CDS | 60.0% | |
| ! | GGGGTGCCTGCAATAGTCCC+CGG | + | chr7_4:62593956-62593975 | Msa1169540:CDS | 65.0% |
| CCGCTACCGGGGACTATTGC+AGG | - | chr7_4:62593965-62593984 | None:intergenic | 65.0% | |
| ACGGGACAACACCGCTACCG+GGG | - | chr7_4:62593976-62593995 | None:intergenic | 65.0% | |
| GACGGGACAACACCGCTACC+GGG | - | chr7_4:62593977-62593996 | None:intergenic | 65.0% | |
| GGACGGGACAACACCGCTAC+CGG | - | chr7_4:62593978-62593997 | None:intergenic | 65.0% | |
| ! | GGGGTGCCTGCAATAGTCCC+CGG | + | chr7_4:62593956-62593975 | Msa1169540:CDS | 65.0% |
| CCGCTACCGGGGACTATTGC+AGG | - | chr7_4:62593965-62593984 | None:intergenic | 65.0% | |
| ACGGGACAACACCGCTACCG+GGG | - | chr7_4:62593976-62593995 | None:intergenic | 65.0% | |
| GACGGGACAACACCGCTACC+GGG | - | chr7_4:62593977-62593996 | None:intergenic | 65.0% | |
| GGACGGGACAACACCGCTAC+CGG | - | chr7_4:62593978-62593997 | None:intergenic | 65.0% | |
| GACGGCGCTGCTGCTGCTAC+CGG | - | chr7_4:62594531-62594550 | None:intergenic | 70.0% | |
| GACGGCGCTGCTGCTGCTAC+CGG | - | chr7_4:62594531-62594550 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 62593866 | 62594907 | 62593866 | ID=Msa1169540;Name=Msa1169540 |
| chr7_4 | mRNA | 62593866 | 62594907 | 62593866 | ID=Msa1169540-mRNA-1;Parent=Msa1169540;Name=Msa1169540-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|2|0|274 |
| chr7_4 | exon | 62593866 | 62594271 | 62593866 | ID=Msa1169540-mRNA-1:exon:19876;Parent=Msa1169540-mRNA-1 |
| chr7_4 | exon | 62594489 | 62594907 | 62594489 | ID=Msa1169540-mRNA-1:exon:19877;Parent=Msa1169540-mRNA-1 |
| chr7_4 | CDS | 62593866 | 62594271 | 62593866 | ID=Msa1169540-mRNA-1:cds;Parent=Msa1169540-mRNA-1 |
| chr7_4 | CDS | 62594489 | 62594907 | 62594489 | ID=Msa1169540-mRNA-1:cds;Parent=Msa1169540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
