AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610430 MtrunA17_Chr4g0043241 98.522 203 2 1 1 203 445 646 1.38e-141 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610430 AT2G03667.1 76.471 204 45 1 1 201 407 610 4.52e-111 330
Msa0610430 AT2G03667.2 69.149 188 53 2 1 185 407 592 5.57e-90 275

Find 69 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATTTGGAAGAGAAATTT+AGG 0.134029 4_2:+58127139 Msa0610430:CDS
TTAACATTGGAATAGCTTTA+TGG 0.154371 4_2:+58126023 Msa0610430:CDS
GAATCAAATCGGAAGAATTT+TGG 0.199066 4_2:+58128347 Msa0610430:CDS
AGGATTCTCCTTGTTGGTTC+TGG 0.256567 4_2:+58126130 Msa0610430:CDS
AACTCGACATGCAAAGAATT+TGG 0.259227 4_2:+58127125 Msa0610430:CDS
ATTTGTAGGAAATCAAATTT+TGG 0.264241 4_2:+58128413 Msa0610430:CDS
TCTTGACAACATTGTTCTAT+TGG 0.273069 4_2:+58125738 Msa0610430:five_prime_UTR
TTAGGCTAGATTTCCATTCT+TGG 0.295521 4_2:+58127288 Msa0610430:intron
GAATTTGGAAGAGAAATTTA+GGG 0.314158 4_2:+58127140 Msa0610430:CDS
TCTTGGATGAGGATGTTATA+AGG 0.320991 4_2:+58127305 Msa0610430:CDS
ATAGCTTTATGGCTCGCTTC+TGG 0.341166 4_2:+58126034 Msa0610430:CDS
GATGAACAGTGTGCTGGTTA+TGG 0.367158 4_2:+58126157 Msa0610430:CDS
CGCTTCTGGTGGTGATGGAT+GGG 0.378774 4_2:+58126048 Msa0610430:CDS
CTTGGATGAGGATGTTATAA+GGG 0.386802 4_2:+58127306 Msa0610430:CDS
TGATGCTGACTTGTCAGATT+TGG 0.390352 4_2:+58125852 Msa0610430:five_prime_UTR
CTGAAGGTTGCACAATTGCT+TGG 0.402771 4_2:+58128176 Msa0610430:intron
TCGCTTCTGGTGGTGATGGA+TGG 0.408976 4_2:+58126047 Msa0610430:CDS
TCTTCCCAAGCGGGCAATCC+AGG 0.409100 4_2:+58128217 Msa0610430:CDS
GCACACCTGGATTGCCCGCT+TGG 0.411228 4_2:-58128222 None:intergenic
AATGCAAGGATTCTCCTTGT+TGG 0.411893 4_2:+58126124 Msa0610430:CDS
ATGAACAGTGTGCTGGTTAT+GGG 0.415694 4_2:+58126158 Msa0610430:CDS
CAGGCAGTGTAAGGATTTGT+AGG 0.429146 4_2:+58128399 Msa0610430:CDS
AAGTAATCGAGCAGCAAATC+AGG 0.431308 4_2:+58128370 Msa0610430:CDS
ATAAAGCTATTCCAATGTTA+AGG 0.439997 4_2:-58126021 None:intergenic
ATCGATATCTTGACTTAGAC+TGG 0.445243 4_2:-58125716 None:intergenic
AGGCGTCTGCAGGCAGTGTA+AGG 0.458985 4_2:+58128390 Msa0610430:CDS
CACACCTGGATTGCCCGCTT+GGG 0.462355 4_2:-58128221 None:intergenic
TGGCTCGCTTCTGGTGGTGA+TGG 0.475719 4_2:+58126043 Msa0610430:CDS
ATAGATGTATTGCTGATAAC+GGG 0.477324 4_2:+58127170 Msa0610430:CDS
ATATGCCTTAATCAGTTGGC+TGG 0.477902 4_2:+58127084 Msa0610430:intron
TTTACTCAACATTCCATTGT+GGG 0.487822 4_2:+58127330 Msa0610430:CDS
GCAGCAAATCAGGCGTCTGC+AGG 0.493660 4_2:+58128380 Msa0610430:CDS
TAGATTTCCATTCTTGGATG+AGG 0.494104 4_2:+58127294 Msa0610430:CDS
GATAGATGTATTGCTGATAA+CGG 0.505667 4_2:+58127169 Msa0610430:CDS
GAATTGCGAGGGAATCAAAT+CGG 0.518766 4_2:+58128336 Msa0610430:CDS
TATGCCTTAATCAGTTGGCT+GGG 0.520727 4_2:+58127085 Msa0610430:intron
GATTAGTACCATGTAGGTGT+TGG 0.527041 4_2:-58125914 None:intergenic
CTTTATATATATATTATGCC+TGG 0.533641 4_2:+58128538 Msa0610430:three_prime_UTR
GCCACTAGGTTGATCAAGGT+TGG 0.537230 4_2:-58127359 None:intergenic
ATAACATCCTCATCCAAGAA+TGG 0.538611 4_2:-58127301 None:intergenic
TAGCATCGGTCATGTTCAGT+TGG 0.543342 4_2:+58125786 Msa0610430:five_prime_UTR
CGATGCCACTAGGTTGATCA+AGG 0.546600 4_2:-58127363 None:intergenic
AACAAGGAGAATCCTTGCAT+TGG 0.546989 4_2:-58126122 None:intergenic
AAAGCATCTGTTGAAAGTGC+AGG 0.548613 4_2:+58125812 Msa0610430:five_prime_UTR
GGTGCTGATGAACAGTGTGC+TGG 0.549892 4_2:+58126151 Msa0610430:CDS
CTTGATCAACCTAGTGGCAT+CGG 0.570501 4_2:+58127364 Msa0610430:CDS
TCTTGACTTAGACTGGAAGC+AGG 0.574292 4_2:-58125709 None:intergenic
AGCAGCGGTTCTTCCCAAGC+GGG 0.574387 4_2:+58128208 Msa0610430:CDS
AGTACCATGTAGGTGTTGGA+AGG 0.577841 4_2:-58125910 None:intergenic
AAATCCTTCCAACACCTACA+TGG 0.583957 4_2:+58125906 Msa0610430:CDS
GCTTTATGGCTCGCTTCTGG+TGG 0.587213 4_2:+58126037 Msa0610430:CDS
GTTTGGTTCTAGAATTGCGA+GGG 0.601355 4_2:+58128325 Msa0610430:intron
AGGTTGGCAACCTCCCACAA+TGG 0.602775 4_2:-58127343 None:intergenic
AGGATTGATTAGTACCATGT+AGG 0.603931 4_2:-58125920 None:intergenic
ACTCAACATTCCATTGTGGG+AGG 0.607103 4_2:+58127333 Msa0610430:CDS
ATGCCTTAATCAGTTGGCTG+GGG 0.607245 4_2:+58127086 Msa0610430:intron
CAGTTGGCTGGGGCTAGATG+AGG 0.613342 4_2:+58127096 Msa0610430:intron
TTAAATACAAGTCCAATGCA+AGG 0.613359 4_2:+58126110 Msa0610430:CDS
GCATCTGTTGAAAGTGCAGG+TGG 0.613712 4_2:+58125815 Msa0610430:five_prime_UTR
AAAGGCAGTATAGTAGCACC+AGG 0.624881 4_2:-58128556 None:intergenic
CATCAGCACCAGAACCAACA+AGG 0.625991 4_2:-58126138 None:intergenic
AAAGTGCAGGTGGAGACTCG+TGG 0.644656 4_2:+58125825 Msa0610430:five_prime_UTR
ATGTATTGCTGATAACGGGA+AGG 0.646619 4_2:+58127174 Msa0610430:CDS
ATAATGATGACACTCATGCA+CGG 0.647092 4_2:+58126086 Msa0610430:CDS
TATTGCTGATAACGGGAAGG+AGG 0.649083 4_2:+58127177 Msa0610430:CDS
GCTTGGTTTATATGAAGCAG+CGG 0.661880 4_2:+58128193 Msa0610430:CDS
AAGCAGCGGTTCTTCCCAAG+CGG 0.665430 4_2:+58128207 Msa0610430:CDS
GCCAACCTTGATCAACCTAG+TGG 0.703456 4_2:+58127358 Msa0610430:CDS
AGTTTGGTTCTAGAATTGCG+AGG 0.738420 4_2:+58128324 Msa0610430:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CACATATTCTAAAATTTAAT+TGG - chr4_2:58126414-58126433 None:intergenic 15.0%
!! AAATGATGGTAAAAATATTT+AGG - chr4_2:58126637-58126656 None:intergenic 15.0%
!! TAATTGAGAAAATAAAATGA+TGG - chr4_2:58126651-58126670 None:intergenic 15.0%
!!! TTTTTATATATGAATTGGAT+TGG + chr4_2:58128510-58128529 Msa0610430:three_prime_UTR 15.0%
!! TTTAATGGAATCCTAATTTA+GGG + chr4_2:58126712-58126731 Msa0610430:intron 20.0%
!! TATGAACAACAAAGTTAATA+GGG + chr4_2:58126852-58126871 Msa0610430:intron 20.0%
!!! ACTTAAAGTTTTTGATTGAT+AGG + chr4_2:58126904-58126923 Msa0610430:intron 20.0%
!! ACTATGAGATTAACAAATTA+GGG - chr4_2:58127237-58127256 None:intergenic 20.0%
!! AACTATGAGATTAACAAATT+AGG - chr4_2:58127238-58127257 None:intergenic 20.0%
!!! TTTGATTTGTTTTTCTCTTT+AGG + chr4_2:58127270-58127289 Msa0610430:intron 20.0%
!!! TGATAAAAAGATTTTAAGAG+AGG + chr4_2:58127387-58127406 Msa0610430:CDS 20.0%
!! AGATGTTAAGTTATTCAAAA+AGG - chr4_2:58127526-58127545 None:intergenic 20.0%
!!! AATTTTGAAGTGTAAAGTTT+TGG - chr4_2:58128251-58128270 None:intergenic 20.0%
!!! ATTTGTAGGAAATCAAATTT+TGG + chr4_2:58128413-58128432 Msa0610430:CDS 20.0%
!! CTTTATATATATATTATGCC+TGG + chr4_2:58128538-58128557 Msa0610430:three_prime_UTR 20.0%
! ATAAAGCTATTCCAATGTTA+AGG - chr4_2:58126024-58126043 None:intergenic 25.0%
!! TTAACATTGGAATAGCTTTA+TGG + chr4_2:58126023-58126042 Msa0610430:CDS 25.0%
! GTTTAATGGAATCCTAATTT+AGG + chr4_2:58126711-58126730 Msa0610430:intron 25.0%
!! TAGAAACTAAATTGATAGCA+AGG + chr4_2:58126795-58126814 Msa0610430:intron 25.0%
!! AGAAACTAAATTGATAGCAA+GGG + chr4_2:58126796-58126815 Msa0610430:intron 25.0%
! CTATGAACAACAAAGTTAAT+AGG + chr4_2:58126851-58126870 Msa0610430:intron 25.0%
! TCAATCAAAAACTTTAAGTC+AGG - chr4_2:58126903-58126922 None:intergenic 25.0%
!!! AAAGTTTTTGATTGATAGGT+TGG + chr4_2:58126908-58126927 Msa0610430:intron 25.0%
!! ACATGTGCATTTTCTTTTAA+AGG + chr4_2:58127049-58127068 Msa0610430:intron 25.0%
!!! ATTTTCTTTTAAAGGACTGA+CGG + chr4_2:58127057-58127076 Msa0610430:intron 25.0%
! TATAATATGCCTTAATCAGT+TGG + chr4_2:58127080-58127099 Msa0610430:intron 25.0%
! AGAATTTGGAAGAGAAATTT+AGG + chr4_2:58127139-58127158 Msa0610430:CDS 25.0%
! GAATTTGGAAGAGAAATTTA+GGG + chr4_2:58127140-58127159 Msa0610430:CDS 25.0%
!! AAACTAGTGATCCAAATTTT+TGG + chr4_2:58127561-58127580 Msa0610430:intron 25.0%
! ACGAGTTATGAATGAATATA+AGG + chr4_2:58127603-58127622 Msa0610430:intron 25.0%
! TCAGTTTATTTAATTGTCTG+TGG + chr4_2:58127720-58127739 Msa0610430:intron 25.0%
!!! TTCAAGTTATTTTCAAGAAC+TGG - chr4_2:58127750-58127769 None:intergenic 25.0%
!!! AAACAAATATGCGTTGATTT+TGG + chr4_2:58127877-58127896 Msa0610430:intron 25.0%
! CATCTATAAAATATCGCAAA+TGG - chr4_2:58128062-58128081 None:intergenic 25.0%
!! ATGGTCAATATATTTTCTGA+AGG + chr4_2:58128160-58128179 Msa0610430:intron 25.0%
!!! TTGATTTGTCTTTGATGTAT+TGG + chr4_2:58128298-58128317 Msa0610430:intron 25.0%
!!! GTTGATTCTTTATTTTCTCT+GGG + chr4_2:58128435-58128454 Msa0610430:exon 25.0%
TCTTGACAACATTGTTCTAT+TGG + chr4_2:58125738-58125757 Msa0610430:five_prime_UTR 30.0%
! GTCGATATCTTTTATAGCAT+CGG + chr4_2:58125772-58125791 Msa0610430:five_prime_UTR 30.0%
GTGTTTGAAAACTTAGCTAT+AGG - chr4_2:58125958-58125977 None:intergenic 30.0%
CCAATCATCAAATAATGTCA+AGG - chr4_2:58125980-58125999 None:intergenic 30.0%
! CCTTGACATTATTTGATGAT+TGG + chr4_2:58125977-58125996 Msa0610430:intron 30.0%
TTAAATACAAGTCCAATGCA+AGG + chr4_2:58126110-58126129 Msa0610430:CDS 30.0%
GCATACAACTTGAAAATTAC+AGG - chr4_2:58126346-58126365 None:intergenic 30.0%
CTAAAGCAAAGAAGAAAGAA+AGG - chr4_2:58126385-58126404 None:intergenic 30.0%
! ACATATTCTTTTCTGTGGAA+AGG - chr4_2:58126459-58126478 None:intergenic 30.0%
! TTGCAACATATTCTTTTCTG+TGG - chr4_2:58126464-58126483 None:intergenic 30.0%
!! TGGCTTTAATAAATTACCTC+AGG + chr4_2:58126521-58126540 Msa0610430:intron 30.0%
TGAATAACATATTAGACCTG+AGG - chr4_2:58126540-58126559 None:intergenic 30.0%
GATTTGAGGAATGAGTTTAA+TGG + chr4_2:58126697-58126716 Msa0610430:intron 30.0%
GTCAAATTAGTCCCTAAATT+AGG - chr4_2:58126726-58126745 None:intergenic 30.0%
!!! TTGATAGCAAGGGTATTTTA+AGG + chr4_2:58126806-58126825 Msa0610430:intron 30.0%
! TTGTTGTTCATAGATACAAG+TGG - chr4_2:58126844-58126863 None:intergenic 30.0%
AAGACTCATTGTATCTTATG+TGG + chr4_2:58126931-58126950 Msa0610430:intron 30.0%
CAAAATTCTTTAAGTCACCT+TGG + chr4_2:58126990-58127009 Msa0610430:intron 30.0%
GTACTATTAAGTTAACACCA+AGG - chr4_2:58127010-58127029 None:intergenic 30.0%
GATAGATGTATTGCTGATAA+CGG + chr4_2:58127169-58127188 Msa0610430:CDS 30.0%
ATAGATGTATTGCTGATAAC+GGG + chr4_2:58127170-58127189 Msa0610430:CDS 30.0%
! TTTTACTCAACATTCCATTG+TGG + chr4_2:58127329-58127348 Msa0610430:CDS 30.0%
TTTACTCAACATTCCATTGT+GGG + chr4_2:58127330-58127349 Msa0610430:CDS 30.0%
TGAGCATGTTACCAAAAATT+TGG - chr4_2:58127575-58127594 None:intergenic 30.0%
! TCAGAAAGAGCTCTATTTTA+TGG + chr4_2:58127681-58127700 Msa0610430:intron 30.0%
ACATGAACTTCTACTTCAAA+GGG - chr4_2:58127796-58127815 None:intergenic 30.0%
AACATGAACTTCTACTTCAA+AGG - chr4_2:58127797-58127816 None:intergenic 30.0%
!!! TTCCTTTATTTTTGACGAAC+CGG - chr4_2:58127858-58127877 None:intergenic 30.0%
!!! GACAGAAAAGGGTTTTATTT+TGG - chr4_2:58128098-58128117 None:intergenic 30.0%
TGAAGATCCAACATAGAAAA+TGG + chr4_2:58128118-58128137 Msa0610430:intron 30.0%
! TGACCATGAGATTTAAGTTT+GGG - chr4_2:58128147-58128166 None:intergenic 30.0%
! TTGACCATGAGATTTAAGTT+TGG - chr4_2:58128148-58128167 None:intergenic 30.0%
! TTTGATGTATTGGTGTAGTT+TGG + chr4_2:58128308-58128327 Msa0610430:intron 30.0%
! GAATCAAATCGGAAGAATTT+TGG + chr4_2:58128347-58128366 Msa0610430:CDS 30.0%
!!! GGTTGATTCTTTATTTTCTC+TGG + chr4_2:58128434-58128453 Msa0610430:exon 30.0%
ATCGATATCTTGACTTAGAC+TGG - chr4_2:58125719-58125738 None:intergenic 35.0%
AGGATTGATTAGTACCATGT+AGG - chr4_2:58125923-58125942 None:intergenic 35.0%
!! TGGTTTGCACATATCTTTTC+AGG + chr4_2:58125997-58126016 Msa0610430:intron 35.0%
!! TCTTTTCAGGACCTTAACAT+TGG + chr4_2:58126010-58126029 Msa0610430:intron 35.0%
ATAATGATGACACTCATGCA+CGG + chr4_2:58126086-58126105 Msa0610430:CDS 35.0%
!!! CATAGAACAAGTTTTAGACG+AGG + chr4_2:58126184-58126203 Msa0610430:CDS 35.0%
! TTTCCTTTTGTCCATTAGCT+TGG + chr4_2:58126318-58126337 Msa0610430:intron 35.0%
!! TTCCTTTTGTCCATTAGCTT+GGG + chr4_2:58126319-58126338 Msa0610430:intron 35.0%
TTTCTTCTTTGCTTTAGCTG+TGG + chr4_2:58126388-58126407 Msa0610430:intron 35.0%
ACCATACAGCTTACAATCTA+TGG + chr4_2:58126501-58126520 Msa0610430:intron 35.0%
AGTAATGATGTGTGTAGCTT+TGG - chr4_2:58126609-58126628 None:intergenic 35.0%
AAATGTCAGTCTTCCTTTGT+TGG + chr4_2:58126675-58126694 Msa0610430:intron 35.0%
TCATTCCTCAAATCCAACAA+AGG - chr4_2:58126691-58126710 None:intergenic 35.0%
! AGATACAAGTGGTGTCAATT+GGG - chr4_2:58126833-58126852 None:intergenic 35.0%
! TAGATACAAGTGGTGTCAAT+TGG - chr4_2:58126834-58126853 None:intergenic 35.0%
AACTCGACATGCAAAGAATT+TGG + chr4_2:58127125-58127144 Msa0610430:CDS 35.0%
TTAGGCTAGATTTCCATTCT+TGG + chr4_2:58127288-58127307 Msa0610430:intron 35.0%
TAGATTTCCATTCTTGGATG+AGG + chr4_2:58127294-58127313 Msa0610430:CDS 35.0%
ATAACATCCTCATCCAAGAA+TGG - chr4_2:58127304-58127323 None:intergenic 35.0%
TCTTGGATGAGGATGTTATA+AGG + chr4_2:58127305-58127324 Msa0610430:CDS 35.0%
CTTGGATGAGGATGTTATAA+GGG + chr4_2:58127306-58127325 Msa0610430:CDS 35.0%
CATCTTGTCTGACCATTTAT+TGG + chr4_2:58127475-58127494 Msa0610430:intron 35.0%
! GAAAGAGCTCTATTTTATGG+CGG + chr4_2:58127684-58127703 Msa0610430:intron 35.0%
! AAAGAGCTCTATTTTATGGC+GGG + chr4_2:58127685-58127704 Msa0610430:intron 35.0%
CATGAACTTCTACTTCAAAG+GGG - chr4_2:58127795-58127814 None:intergenic 35.0%
AGATCACTGTTTCACTCATT+AGG + chr4_2:58127938-58127957 Msa0610430:intron 35.0%
TTTCACTCATTAGGATGAAG+AGG + chr4_2:58127947-58127966 Msa0610430:intron 35.0%
AACAATGACTCATGGTACAT+CGG - chr4_2:58128000-58128019 None:intergenic 35.0%
AAAATATCGCAAATGGTCCA+TGG - chr4_2:58128055-58128074 None:intergenic 35.0%
TTGGATCTTCAGACAGAAAA+GGG - chr4_2:58128109-58128128 None:intergenic 35.0%
ACTCCCAAACTTAAATCTCA+TGG + chr4_2:58128141-58128160 Msa0610430:intron 35.0%
!! TTTATTTTCTCTGGGCATGT+GGG + chr4_2:58128443-58128462 Msa0610430:three_prime_UTR 35.0%
! AAAGCATCTGTTGAAAGTGC+AGG + chr4_2:58125812-58125831 Msa0610430:five_prime_UTR 40.0%
!! TGATGCTGACTTGTCAGATT+TGG + chr4_2:58125852-58125871 Msa0610430:five_prime_UTR 40.0%
AAATCCTTCCAACACCTACA+TGG + chr4_2:58125906-58125925 Msa0610430:CDS 40.0%
GATTAGTACCATGTAGGTGT+TGG - chr4_2:58125917-58125936 None:intergenic 40.0%
! GCTATAGGCTTTTCAATCTG+AGG - chr4_2:58125943-58125962 None:intergenic 40.0%
AACAAGGAGAATCCTTGCAT+TGG - chr4_2:58126125-58126144 None:intergenic 40.0%
AATGCAAGGATTCTCCTTGT+TGG + chr4_2:58126124-58126143 Msa0610430:CDS 40.0%
!! ATGAACAGTGTGCTGGTTAT+GGG + chr4_2:58126158-58126177 Msa0610430:CDS 40.0%
!!! GAACAAGTTTTAGACGAGGA+AGG + chr4_2:58126188-58126207 Msa0610430:CDS 40.0%
!! CGAGGAAGGTATTATCACTA+TGG + chr4_2:58126202-58126221 Msa0610430:intron 40.0%
AATTACAGGACCCAAGCTAA+TGG - chr4_2:58126332-58126351 None:intergenic 40.0%
GCCATAGATTGTAAGCTGTA+TGG - chr4_2:58126505-58126524 None:intergenic 40.0%
!! TAGCTTTGGACGAGAAATCA+GGG - chr4_2:58126595-58126614 None:intergenic 40.0%
GTCTTCCTTTGTTGGATTTG+AGG + chr4_2:58126683-58126702 Msa0610430:intron 40.0%
ACGAGAGTTTCCATGATTGA+GGG + chr4_2:58126744-58126763 Msa0610430:intron 40.0%
TCAATTAAGCCCCTCAATCA+TGG - chr4_2:58126757-58126776 None:intergenic 40.0%
ATATGCCTTAATCAGTTGGC+TGG + chr4_2:58127084-58127103 Msa0610430:intron 40.0%
TATGCCTTAATCAGTTGGCT+GGG + chr4_2:58127085-58127104 Msa0610430:intron 40.0%
!! ATGTATTGCTGATAACGGGA+AGG + chr4_2:58127174-58127193 Msa0610430:CDS 40.0%
! TTTTTATCACCGATGCCACT+AGG - chr4_2:58127376-58127395 None:intergenic 40.0%
! AGGTATTGTTGTTGACTGAG+TGG + chr4_2:58127407-58127426 Msa0610430:intron 40.0%
TTGTCGAGTCAGCCAATAAA+TGG - chr4_2:58127490-58127509 None:intergenic 40.0%
CACAAGTATGAGTTCAGTTC+AGG - chr4_2:58127649-58127668 None:intergenic 40.0%
TTCTTCCATGTTCTCATGAG+AGG + chr4_2:58127815-58127834 Msa0610430:intron 40.0%
!! TGCCGGTTCGTCAAAAATAA+AGG + chr4_2:58127853-58127872 Msa0610430:intron 40.0%
TGATCTGATTGGTACGAGTT+TGG - chr4_2:58127924-58127943 None:intergenic 40.0%
GAGTGAAACAGTGATCTGAT+TGG - chr4_2:58127935-58127954 None:intergenic 40.0%
CATGGTACATCGGTATTTGT+CGG - chr4_2:58127990-58128009 None:intergenic 40.0%
GATGTACCATGAGTCATTGT+TGG + chr4_2:58127999-58128018 Msa0610430:intron 40.0%
GAAACTCCAACAATGACTCA+TGG - chr4_2:58128008-58128027 None:intergenic 40.0%
TGAGTCATTGTTGGAGTTTC+TGG + chr4_2:58128008-58128027 Msa0610430:intron 40.0%
!!! TTCTGGTGATTTTCAAGTGC+CGG + chr4_2:58128025-58128044 Msa0610430:intron 40.0%
GTTGGATCTTCAGACAGAAA+AGG - chr4_2:58128110-58128129 None:intergenic 40.0%
! TGGGAGTCCATTTTCTATGT+TGG - chr4_2:58128128-58128147 None:intergenic 40.0%
GCTTGGTTTATATGAAGCAG+CGG + chr4_2:58128193-58128212 Msa0610430:CDS 40.0%
!! AGTTTGGTTCTAGAATTGCG+AGG + chr4_2:58128324-58128343 Msa0610430:intron 40.0%
!! GTTTGGTTCTAGAATTGCGA+GGG + chr4_2:58128325-58128344 Msa0610430:intron 40.0%
GAATTGCGAGGGAATCAAAT+CGG + chr4_2:58128336-58128355 Msa0610430:CDS 40.0%
AAGTAATCGAGCAGCAAATC+AGG + chr4_2:58128370-58128389 Msa0610430:CDS 40.0%
!!! CTTTATTTTCTCTGGGCATG+TGG + chr4_2:58128442-58128461 Msa0610430:three_prime_UTR 40.0%
TCTTGACTTAGACTGGAAGC+AGG - chr4_2:58125712-58125731 None:intergenic 45.0%
!! TAGCATCGGTCATGTTCAGT+TGG + chr4_2:58125786-58125805 Msa0610430:five_prime_UTR 45.0%
!! AGTACCATGTAGGTGTTGGA+AGG - chr4_2:58125913-58125932 None:intergenic 45.0%
!! ATAGCTTTATGGCTCGCTTC+TGG + chr4_2:58126034-58126053 Msa0610430:CDS 45.0%
!! AGGATTCTCCTTGTTGGTTC+TGG + chr4_2:58126130-58126149 Msa0610430:CDS 45.0%
!! GATGAACAGTGTGCTGGTTA+TGG + chr4_2:58126157-58126176 Msa0610430:CDS 45.0%
! GACCCAAGCTAATGGACAAA+AGG - chr4_2:58126324-58126343 None:intergenic 45.0%
!! AGCTTTGGACGAGAAATCAG+GGG - chr4_2:58126594-58126613 None:intergenic 45.0%
!! GTAGCTTTGGACGAGAAATC+AGG - chr4_2:58126596-58126615 None:intergenic 45.0%
GACGAGAGTTTCCATGATTG+AGG + chr4_2:58126743-58126762 Msa0610430:intron 45.0%
CGAGAGTTTCCATGATTGAG+GGG + chr4_2:58126745-58126764 Msa0610430:intron 45.0%
ATGCCTTAATCAGTTGGCTG+GGG + chr4_2:58127086-58127105 Msa0610430:intron 45.0%
!! TATTGCTGATAACGGGAAGG+AGG + chr4_2:58127177-58127196 Msa0610430:CDS 45.0%
ACTCAACATTCCATTGTGGG+AGG + chr4_2:58127333-58127352 Msa0610430:CDS 45.0%
CTTGATCAACCTAGTGGCAT+CGG + chr4_2:58127364-58127383 Msa0610430:CDS 45.0%
TTCAGTTCAGGCAACATCAC+TGG - chr4_2:58127637-58127656 None:intergenic 45.0%
!!! TTTTATGGCGGGTTCTACTG+TGG + chr4_2:58127696-58127715 Msa0610430:intron 45.0%
TTGTCGGAAGTAGAAGTTCG+CGG - chr4_2:58127974-58127993 None:intergenic 45.0%
CTGAAGGTTGCACAATTGCT+TGG + chr4_2:58128176-58128195 Msa0610430:intron 45.0%
!!! AAAGTTTTGGAGTGCACACC+TGG - chr4_2:58128238-58128257 None:intergenic 45.0%
CAGGCAGTGTAAGGATTTGT+AGG + chr4_2:58128399-58128418 Msa0610430:CDS 45.0%
! GCATGTGGGACTCATCTTTT+TGG + chr4_2:58128457-58128476 Msa0610430:three_prime_UTR 45.0%
!!! AAATTTTTTTATATATGAAT+TGG + chr4_2:58128505-58128524 Msa0610430:three_prime_UTR 5.0%
! GCATCTGTTGAAAGTGCAGG+TGG + chr4_2:58125815-58125834 Msa0610430:five_prime_UTR 50.0%
CATCAGCACCAGAACCAACA+AGG - chr4_2:58126141-58126160 None:intergenic 50.0%
TAGCCCCAGCCAACTGATTA+AGG - chr4_2:58127092-58127111 None:intergenic 50.0%
GCCAACCTTGATCAACCTAG+TGG + chr4_2:58127358-58127377 Msa0610430:CDS 50.0%
!! GCCACTAGGTTGATCAAGGT+TGG - chr4_2:58127362-58127381 None:intergenic 50.0%
!! CGATGCCACTAGGTTGATCA+AGG - chr4_2:58127366-58127385 None:intergenic 50.0%
GGGGTGACATAGTTCATCGT+TGG - chr4_2:58127776-58127795 None:intergenic 50.0%
CAACGCCTCTCATGAGAACA+TGG - chr4_2:58127823-58127842 None:intergenic 50.0%
!! ATGAGAGGCGTTGACCTGAT+CGG + chr4_2:58127830-58127849 Msa0610430:intron 50.0%
!! TTTCAAGTGCCGGTACACCA+TGG + chr4_2:58128035-58128054 Msa0610430:intron 50.0%
GCAAATGGTCCATGGTGTAC+CGG - chr4_2:58128047-58128066 None:intergenic 50.0%
AAAGTGCAGGTGGAGACTCG+TGG + chr4_2:58125825-58125844 Msa0610430:five_prime_UTR 55.0%
GCTTTATGGCTCGCTTCTGG+TGG + chr4_2:58126037-58126056 Msa0610430:CDS 55.0%
!! TCGCTTCTGGTGGTGATGGA+TGG + chr4_2:58126047-58126066 Msa0610430:CDS 55.0%
!! CGCTTCTGGTGGTGATGGAT+GGG + chr4_2:58126048-58126067 Msa0610430:CDS 55.0%
!! GGTGCTGATGAACAGTGTGC+TGG + chr4_2:58126151-58126170 Msa0610430:CDS 55.0%
AGGTTGGCAACCTCCCACAA+TGG - chr4_2:58127346-58127365 None:intergenic 55.0%
AAGCAGCGGTTCTTCCCAAG+CGG + chr4_2:58128207-58128226 Msa0610430:CDS 55.0%
! TGGCTCGCTTCTGGTGGTGA+TGG + chr4_2:58126043-58126062 Msa0610430:CDS 60.0%
CAGTTGGCTGGGGCTAGATG+AGG + chr4_2:58127096-58127115 Msa0610430:intron 60.0%
!! TTGACGAACCGGCACCGATC+AGG - chr4_2:58127847-58127866 None:intergenic 60.0%
AGCAGCGGTTCTTCCCAAGC+GGG + chr4_2:58128208-58128227 Msa0610430:CDS 60.0%
TCTTCCCAAGCGGGCAATCC+AGG + chr4_2:58128217-58128236 Msa0610430:CDS 60.0%
CACACCTGGATTGCCCGCTT+GGG - chr4_2:58128224-58128243 None:intergenic 60.0%
GCAGCAAATCAGGCGTCTGC+AGG + chr4_2:58128380-58128399 Msa0610430:CDS 60.0%
AGGCGTCTGCAGGCAGTGTA+AGG + chr4_2:58128390-58128409 Msa0610430:CDS 60.0%
!! GGCGTTGACCTGATCGGTGC+CGG + chr4_2:58127836-58127855 Msa0610430:intron 65.0%
GCACACCTGGATTGCCCGCT+TGG - chr4_2:58128225-58128244 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58125701 58128566 58125701 ID=Msa0610430;Name=Msa0610430
chr4_2 mRNA 58125701 58128566 58125701 ID=Msa0610430-mRNA-1;Parent=Msa0610430;Name=Msa0610430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=194|1|1|1|1|1|6|127|203
chr4_2 exon 58125701 58125927 58125701 ID=Msa0610430-mRNA-1:exon:15228;Parent=Msa0610430-mRNA-1
chr4_2 exon 58126019 58126209 58126019 ID=Msa0610430-mRNA-1:exon:15229;Parent=Msa0610430-mRNA-1
chr4_2 exon 58127099 58127198 58127099 ID=Msa0610430-mRNA-1:exon:15230;Parent=Msa0610430-mRNA-1
chr4_2 exon 58127292 58127408 58127292 ID=Msa0610430-mRNA-1:exon:15231;Parent=Msa0610430-mRNA-1
chr4_2 exon 58128182 58128238 58128182 ID=Msa0610430-mRNA-1:exon:15232;Parent=Msa0610430-mRNA-1
chr4_2 exon 58128326 58128566 58128326 ID=Msa0610430-mRNA-1:exon:15233;Parent=Msa0610430-mRNA-1
chr4_2 five_prime_UTR 58125701 58125894 58125701 ID=Msa0610430-mRNA-1:five_prime_utr;Parent=Msa0610430-mRNA-1
chr4_2 CDS 58125895 58125927 58125895 ID=Msa0610430-mRNA-1:cds;Parent=Msa0610430-mRNA-1
chr4_2 CDS 58126019 58126209 58126019 ID=Msa0610430-mRNA-1:cds;Parent=Msa0610430-mRNA-1
chr4_2 CDS 58127099 58127198 58127099 ID=Msa0610430-mRNA-1:cds;Parent=Msa0610430-mRNA-1
chr4_2 CDS 58127292 58127408 58127292 ID=Msa0610430-mRNA-1:cds;Parent=Msa0610430-mRNA-1
chr4_2 CDS 58128182 58128238 58128182 ID=Msa0610430-mRNA-1:cds;Parent=Msa0610430-mRNA-1
chr4_2 CDS 58128326 58128439 58128326 ID=Msa0610430-mRNA-1:cds;Parent=Msa0610430-mRNA-1
chr4_2 three_prime_UTR 58128440 58128566 58128440 ID=Msa0610430-mRNA-1:three_prime_utr;Parent=Msa0610430-mRNA-1
Gene Sequence

>Msa0610430

ATGTCACTCATAAATCCTTCCAACACCTACATGGACCTTAACATTGGAATAGCTTTATGGCTCGCTTCTGGTGGTGATGGATGGGTGTCTGATGCAGATGATAATGATGACACTCATGCACGGATTAAATACAAGTCCAATGCAAGGATTCTCCTTGTTGGTTCTGGTGCTGATGAACAGTGTGCTGGTTATGGGAGACATAGAACAAGTTTTAGACGAGGAAGTTGGCTGGGGCTAGATGAGGAAATGAAACTCGACATGCAAAGAATTTGGAAGAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAACGGGAAGGAGGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGGTTTTACTCAACATTCCATTGTGGGAGGTTGCCAACCTTGATCAACCTAGTGGCATCGGTGATAAAAAGATTTTAAGAGAGGTTGCACAATTGCTTGGTTTATATGAAGCAGCGGTTCTTCCCAAGCGGGCAATCCAGTTTGGTTCTAGAATTGCGAGGGAATCAAATCGGAAGAATTTTGGAAGTAATCGAGCAGCAAATCAGGCGTCTGCAGGCAGTGTAAGGATTTGTAGGAAATCAAATTTTGGTTGA

Protein sequence

>Msa0610430

MSLINPSNTYMDLNIGIALWLASGGDGWVSDADDNDDTHARIKYKSNARILLVGSGADEQCAGYGRHRTSFRRGSWLGLDEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRVLLNIPLWEVANLDQPSGIGDKKILREVAQLLGLYEAAVLPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVRICRKSNFG*