Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174320 | XP_039686869.1 | 95.679 | 162 | 7 | 0 | 32 | 193 | 62 | 223 | 1.35e-109 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174320 | sp|Q9SWG3|FAR1_ARATH | 48.503 | 167 | 81 | 2 | 32 | 193 | 72 | 238 | 4.01e-43 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174320 | A0A2K3NBU0 | 77.160 | 162 | 37 | 0 | 32 | 193 | 58 | 219 | 5.53e-86 | 276 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1174320 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054760 | Msa1174320 | 0.802435 | 5.618007e-49 | -8.615850e-47 |
| Msa0621390 | Msa1174320 | 0.803299 | 3.725240e-49 | -8.615850e-47 |
| Msa0217470 | Msa1174320 | 0.820434 | 6.874758e-53 | -8.615850e-47 |
| Msa0380430 | Msa1174320 | 0.806286 | 8.854656e-50 | -8.615850e-47 |
| Msa0423600 | Msa1174320 | 0.808092 | 3.670029e-50 | -8.615850e-47 |
| Msa1055360 | Msa1174320 | 0.804602 | 1.996676e-49 | -8.615850e-47 |
| Msa1093390 | Msa1174320 | 0.805236 | 1.471723e-49 | -8.615850e-47 |
| Msa1174320 | Msa1233770 | 0.806777 | 6.977714e-50 | -8.615850e-47 |
| Msa1174320 | Msa1276080 | 0.809909 | 1.498538e-50 | -8.615850e-47 |
| Msa1174320 | Msa1450420 | 0.801441 | 8.989500e-49 | -8.615850e-47 |
| Msa0512130 | Msa1174320 | 0.801091 | 1.060129e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174320 | MtrunA17_Chr1g0207551 | 45.122 | 164 | 88 | 1 | 32 | 193 | 55 | 218 | 9.66e-40 | 143 |
| Msa1174320 | MtrunA17_Chr2g0329031 | 46.012 | 163 | 81 | 3 | 32 | 193 | 35 | 191 | 9.40e-39 | 140 |
| Msa1174320 | MtrunA17_Chr3g0080351 | 38.919 | 185 | 72 | 4 | 26 | 192 | 90 | 251 | 1.48e-33 | 125 |
| Msa1174320 | MtrunA17_Chr2g0296781 | 35.758 | 165 | 96 | 3 | 34 | 193 | 20 | 179 | 9.11e-21 | 89.4 |
| Msa1174320 | MtrunA17_Chr5g0448761 | 34.228 | 149 | 88 | 4 | 52 | 191 | 101 | 248 | 5.84e-19 | 84.0 |
| Msa1174320 | MtrunA17_Chr1g0202341 | 31.250 | 208 | 116 | 8 | 3 | 188 | 30 | 232 | 2.39e-15 | 73.6 |
| Msa1174320 | MtrunA17_Chr2g0287651 | 28.655 | 171 | 105 | 5 | 27 | 185 | 91 | 256 | 1.06e-14 | 71.6 |
| Msa1174320 | MtrunA17_Chr7g0258861 | 28.289 | 152 | 104 | 2 | 34 | 180 | 33 | 184 | 2.95e-14 | 69.7 |
| Msa1174320 | MtrunA17_Chr6g0451441 | 30.464 | 151 | 103 | 2 | 35 | 185 | 111 | 259 | 1.30e-12 | 65.5 |
| Msa1174320 | MtrunA17_Chr1g0203051 | 26.351 | 148 | 96 | 5 | 43 | 178 | 106 | 252 | 3.06e-12 | 64.3 |
| Msa1174320 | MtrunA17_Chr8g0363841 | 28.070 | 114 | 81 | 1 | 74 | 186 | 84 | 197 | 7.95e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174320 | AT4G15090.1 | 48.503 | 167 | 81 | 2 | 32 | 193 | 72 | 238 | 4.08e-44 | 156 |
| Msa1174320 | AT4G15090.5 | 48.503 | 167 | 81 | 2 | 32 | 193 | 72 | 238 | 4.08e-44 | 156 |
| Msa1174320 | AT4G15090.3 | 48.503 | 167 | 81 | 2 | 32 | 193 | 72 | 238 | 4.08e-44 | 156 |
| Msa1174320 | AT4G15090.2 | 48.503 | 167 | 81 | 2 | 32 | 193 | 72 | 238 | 4.08e-44 | 156 |
| Msa1174320 | AT4G15090.4 | 48.503 | 167 | 81 | 2 | 32 | 193 | 72 | 238 | 4.08e-44 | 156 |
| Msa1174320 | AT1G76320.2 | 43.293 | 164 | 85 | 3 | 32 | 193 | 18 | 175 | 5.25e-36 | 133 |
| Msa1174320 | AT1G76320.1 | 43.293 | 164 | 85 | 3 | 32 | 193 | 18 | 175 | 5.54e-36 | 133 |
| Msa1174320 | AT1G76320.4 | 43.293 | 164 | 85 | 3 | 32 | 193 | 18 | 175 | 5.54e-36 | 133 |
| Msa1174320 | AT1G76320.3 | 43.293 | 164 | 85 | 3 | 32 | 193 | 18 | 175 | 5.65e-36 | 132 |
| Msa1174320 | AT3G22170.2 | 38.764 | 178 | 70 | 3 | 32 | 192 | 91 | 246 | 3.31e-34 | 128 |
| Msa1174320 | AT3G22170.1 | 38.764 | 178 | 70 | 3 | 32 | 192 | 91 | 246 | 3.31e-34 | 128 |
| Msa1174320 | AT2G32250.5 | 52.128 | 94 | 42 | 2 | 32 | 124 | 59 | 150 | 2.87e-23 | 97.1 |
| Msa1174320 | AT2G32250.7 | 52.128 | 94 | 42 | 2 | 32 | 124 | 18 | 109 | 3.22e-23 | 96.7 |
| Msa1174320 | AT2G32250.6 | 52.128 | 94 | 42 | 2 | 32 | 124 | 59 | 150 | 3.23e-23 | 96.7 |
| Msa1174320 | AT2G32250.1 | 52.128 | 94 | 42 | 2 | 32 | 124 | 59 | 150 | 3.23e-23 | 96.7 |
| Msa1174320 | AT2G32250.3 | 52.128 | 94 | 42 | 2 | 32 | 124 | 59 | 150 | 3.23e-23 | 96.7 |
| Msa1174320 | AT2G32250.8 | 52.128 | 94 | 42 | 2 | 32 | 124 | 18 | 109 | 3.32e-23 | 96.7 |
| Msa1174320 | AT2G32250.2 | 52.128 | 94 | 42 | 2 | 32 | 124 | 59 | 150 | 3.38e-23 | 96.7 |
| Msa1174320 | AT2G32250.4 | 52.128 | 94 | 42 | 2 | 32 | 124 | 59 | 150 | 3.38e-23 | 96.7 |
| Msa1174320 | AT4G38180.1 | 35.135 | 148 | 87 | 3 | 52 | 191 | 114 | 260 | 4.75e-21 | 90.5 |
| Msa1174320 | AT4G19990.3 | 37.302 | 126 | 61 | 2 | 20 | 127 | 29 | 154 | 2.19e-15 | 73.9 |
| Msa1174320 | AT4G19990.4 | 37.302 | 126 | 61 | 2 | 20 | 127 | 29 | 154 | 2.19e-15 | 73.9 |
| Msa1174320 | AT4G19990.7 | 37.302 | 126 | 61 | 2 | 20 | 127 | 43 | 168 | 2.31e-15 | 73.9 |
| Msa1174320 | AT4G19990.5 | 37.302 | 126 | 61 | 2 | 20 | 127 | 29 | 154 | 2.46e-15 | 73.9 |
| Msa1174320 | AT4G19990.6 | 39.286 | 112 | 50 | 2 | 20 | 113 | 29 | 140 | 2.72e-15 | 73.9 |
| Msa1174320 | AT4G19990.2 | 39.286 | 112 | 50 | 2 | 20 | 113 | 29 | 140 | 2.72e-15 | 73.9 |
Find 35 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAATTTGTGATGGAAAA+TGG | 0.198140 | 8_1:-5394213 | Msa1174320:CDS |
| AAATTTCTATGTTAAAATTA+AGG | 0.213979 | 8_1:-5395103 | Msa1174320:intron |
| AACGCCGACCTTTATCTAAA+TGG | 0.237387 | 8_1:+5393978 | None:intergenic |
| TATGCTAAGTCAGTTGGATT+TGG | 0.280799 | 8_1:-5394388 | Msa1174320:intron |
| CGGCGTTTGGCTTTAGAATC+AGG | 0.298007 | 8_1:-5393962 | Msa1174320:CDS |
| GAGCTTTATTGATTCCTCTA+TGG | 0.299611 | 8_1:+5394122 | None:intergenic |
| GCCACAATGGACAAAGAATA+TGG | 0.322237 | 8_1:-5394043 | Msa1174320:CDS |
| CACCGTCGTCAAACCATTGT+TGG | 0.347572 | 8_1:-5395160 | Msa1174320:CDS |
| ATGCTAAGTCAGTTGGATTT+GGG | 0.354359 | 8_1:-5394387 | Msa1174320:intron |
| GTAAGAAACCATTTAGATAA+AGG | 0.354999 | 8_1:-5393986 | Msa1174320:CDS |
| TTTAGATAAAGGTCGGCGTT+TGG | 0.420224 | 8_1:-5393975 | Msa1174320:CDS |
| ACATAGAAATTTGGTGGAAG+TGG | 0.428437 | 8_1:+5395114 | None:intergenic |
| GGAAAATAATGTGCATATGC+TGG | 0.447627 | 8_1:+5394148 | None:intergenic |
| ATATGAAAACATTGGTTGCT+TGG | 0.449564 | 8_1:-5394017 | Msa1174320:CDS |
| CGTGTTAAAAGAATTTGTGA+TGG | 0.498075 | 8_1:-5394220 | Msa1174320:CDS |
| ACTCATTATGCTAAGTCAGT+TGG | 0.500199 | 8_1:-5394394 | Msa1174320:intron |
| TCCATATTCTTTGTCCATTG+TGG | 0.503057 | 8_1:+5394042 | None:intergenic |
| AGTTATGCTTGCACAAGATA+CGG | 0.514711 | 8_1:-5394310 | Msa1174320:CDS |
| AAATCCACGTCCTTGTTTGA+AGG | 0.523815 | 8_1:-5394263 | Msa1174320:CDS |
| ATTGAAACTTTGCACCATGT+TGG | 0.528985 | 8_1:-5394088 | Msa1174320:CDS |
| TCCACGTCCTTGTTTGAAGG+TGG | 0.544839 | 8_1:-5394260 | Msa1174320:CDS |
| AGGAGATGCAAATACAATGT+TGG | 0.548389 | 8_1:-5393942 | Msa1174320:CDS |
| TTATTGATTCCTCTATGGCA+AGG | 0.554774 | 8_1:+5394127 | None:intergenic |
| TATGGAGGATATGAAAACAT+TGG | 0.557417 | 8_1:-5394025 | Msa1174320:CDS |
| CCACGTCCTTGTTTGAAGGT+GGG | 0.564321 | 8_1:-5394259 | Msa1174320:CDS |
| TGCTTGTTCTCACTCCAACA+TGG | 0.579133 | 8_1:+5394074 | None:intergenic |
| TTGTTTGAAGGTGGGATGTG+AGG | 0.585943 | 8_1:-5394251 | Msa1174320:CDS |
| CCCACCTTCAAACAAGGACG+TGG | 0.589716 | 8_1:+5394259 | None:intergenic |
| TCACATCCCACCTTCAAACA+AGG | 0.596792 | 8_1:+5394253 | None:intergenic |
| GAAACCATTTAGATAAAGGT+CGG | 0.598835 | 8_1:-5393982 | Msa1174320:CDS |
| GATGATGGCAACACCAACAA+TGG | 0.617449 | 8_1:+5395147 | None:intergenic |
| AGTGGCTTTGAAACAGATGA+TGG | 0.632262 | 8_1:+5395132 | None:intergenic |
| CAACAATGGTTTGACGACGG+TGG | 0.637275 | 8_1:+5395161 | None:intergenic |
| CACCAACAATGGTTTGACGA+CGG | 0.668425 | 8_1:+5395158 | None:intergenic |
| ACAATGGACAAAGAATATGG+AGG | 0.732815 | 8_1:-5394040 | Msa1174320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTAACATAGAAATT+TGG | + | chr8_1:5393991-5394010 | None:intergenic | 10.0% |
| !! | AAATTTCTATGTTAAAATTA+AGG | - | chr8_1:5393990-5394009 | Msa1174320:CDS | 10.0% |
| !! | ACATTAAAAAGAATTTATTT+GGG | + | chr8_1:5394158-5394177 | None:intergenic | 10.0% |
| !! | AACATTAAAAAGAATTTATT+TGG | + | chr8_1:5394159-5394178 | None:intergenic | 10.0% |
| !!! | TTAATTTTAACATAGAAATT+TGG | + | chr8_1:5393991-5394010 | None:intergenic | 10.0% |
| !! | AAATTTCTATGTTAAAATTA+AGG | - | chr8_1:5393990-5394009 | Msa1174320:CDS | 10.0% |
| !! | ACATTAAAAAGAATTTATTT+GGG | + | chr8_1:5394158-5394177 | None:intergenic | 10.0% |
| !! | AACATTAAAAAGAATTTATT+TGG | + | chr8_1:5394159-5394178 | None:intergenic | 10.0% |
| !! | CATTAAAAAGAATTTATTTG+GGG | + | chr8_1:5394157-5394176 | None:intergenic | 15.0% |
| !!! | ATTTTCCTTATCTAAAATAT+AGG | - | chr8_1:5394501-5394520 | Msa1174320:intron | 15.0% |
| !!! | TAATTCCTATATTTTAGATA+AGG | + | chr8_1:5394509-5394528 | None:intergenic | 15.0% |
| !!! | ATCTAAAATATAGGAATTAA+TGG | - | chr8_1:5394510-5394529 | Msa1174320:intron | 15.0% |
| !! | CATTAAAAAGAATTTATTTG+GGG | + | chr8_1:5394157-5394176 | None:intergenic | 15.0% |
| !!! | ATTTTCCTTATCTAAAATAT+AGG | - | chr8_1:5394501-5394520 | Msa1174320:intron | 15.0% |
| !!! | TAATTCCTATATTTTAGATA+AGG | + | chr8_1:5394509-5394528 | None:intergenic | 15.0% |
| !!! | ATCTAAAATATAGGAATTAA+TGG | - | chr8_1:5394510-5394529 | Msa1174320:intron | 15.0% |
| !!! | ATTTTAACATAGAAATTTGG+TGG | + | chr8_1:5393988-5394007 | None:intergenic | 20.0% |
| !!! | TTAGCCTTATAATATATATG+TGG | - | chr8_1:5394063-5394082 | Msa1174320:CDS | 20.0% |
| !!! | TAGCCTTATAATATATATGT+GGG | - | chr8_1:5394064-5394083 | Msa1174320:CDS | 20.0% |
| !! | AATCCCACATATATATTATA+AGG | + | chr8_1:5394070-5394089 | None:intergenic | 20.0% |
| !!! | ATTTTAACATAGAAATTTGG+TGG | + | chr8_1:5393988-5394007 | None:intergenic | 20.0% |
| !!! | TTAGCCTTATAATATATATG+TGG | - | chr8_1:5394063-5394082 | Msa1174320:CDS | 20.0% |
| !!! | TAGCCTTATAATATATATGT+GGG | - | chr8_1:5394064-5394083 | Msa1174320:CDS | 20.0% |
| !! | AATCCCACATATATATTATA+AGG | + | chr8_1:5394070-5394089 | None:intergenic | 20.0% |
| ! | TTAAGGTAAACATTACTTGT+TGG | - | chr8_1:5394007-5394026 | Msa1174320:CDS | 25.0% |
| ! | GATTTATGACTAATTCTTTG+TGG | - | chr8_1:5394192-5394211 | Msa1174320:CDS | 25.0% |
| ! | AATTAATGGAAGTTGTTGAT+GGG | - | chr8_1:5394524-5394543 | Msa1174320:intron | 25.0% |
| !! | ATGGTGAACATTTTATTGAT+GGG | - | chr8_1:5394548-5394567 | Msa1174320:intron | 25.0% |
| !! | AAAGAATTTGTGATGGAAAA+TGG | - | chr8_1:5394880-5394899 | Msa1174320:intron | 25.0% |
| ! | GTAAGAAACCATTTAGATAA+AGG | - | chr8_1:5395107-5395126 | Msa1174320:CDS | 25.0% |
| ! | TTAAGGTAAACATTACTTGT+TGG | - | chr8_1:5394007-5394026 | Msa1174320:CDS | 25.0% |
| ! | GATTTATGACTAATTCTTTG+TGG | - | chr8_1:5394192-5394211 | Msa1174320:CDS | 25.0% |
| ! | AATTAATGGAAGTTGTTGAT+GGG | - | chr8_1:5394524-5394543 | Msa1174320:intron | 25.0% |
| !! | ATGGTGAACATTTTATTGAT+GGG | - | chr8_1:5394548-5394567 | Msa1174320:intron | 25.0% |
| !! | AAAGAATTTGTGATGGAAAA+TGG | - | chr8_1:5394880-5394899 | Msa1174320:intron | 25.0% |
| ! | GTAAGAAACCATTTAGATAA+AGG | - | chr8_1:5395107-5395126 | Msa1174320:CDS | 25.0% |
| ! | GTAAACATTACTTGTTGGTA+TGG | - | chr8_1:5394012-5394031 | Msa1174320:CDS | 30.0% |
| AAGAATTTATTTGGGGAAGT+TGG | + | chr8_1:5394150-5394169 | None:intergenic | 30.0% | |
| !! | CACAGTTGGCAAATTTTAAT+TGG | + | chr8_1:5394441-5394460 | None:intergenic | 30.0% |
| !!! | AGAATTTTTCAAGACACAGT+TGG | + | chr8_1:5394455-5394474 | None:intergenic | 30.0% |
| GAATTAATGGAAGTTGTTGA+TGG | - | chr8_1:5394523-5394542 | Msa1174320:intron | 30.0% | |
| ATTAATGGAAGTTGTTGATG+GGG | - | chr8_1:5394525-5394544 | Msa1174320:intron | 30.0% | |
| ! | GATGGTGAACATTTTATTGA+TGG | - | chr8_1:5394547-5394566 | Msa1174320:intron | 30.0% |
| TCAAATTCCATTCCAATGTT+AGG | + | chr8_1:5394652-5394671 | None:intergenic | 30.0% | |
| CGTGTTAAAAGAATTTGTGA+TGG | - | chr8_1:5394873-5394892 | Msa1174320:intron | 30.0% | |
| !!! | AAGCAAATTTTTTGCCACAA+TGG | - | chr8_1:5395037-5395056 | Msa1174320:intron | 30.0% |
| TATGGAGGATATGAAAACAT+TGG | - | chr8_1:5395068-5395087 | Msa1174320:intron | 30.0% | |
| ! | ATATGAAAACATTGGTTGCT+TGG | - | chr8_1:5395076-5395095 | Msa1174320:intron | 30.0% |
| GAAACCATTTAGATAAAGGT+CGG | - | chr8_1:5395111-5395130 | Msa1174320:CDS | 30.0% | |
| ! | GTAAACATTACTTGTTGGTA+TGG | - | chr8_1:5394012-5394031 | Msa1174320:CDS | 30.0% |
| AAGAATTTATTTGGGGAAGT+TGG | + | chr8_1:5394150-5394169 | None:intergenic | 30.0% | |
| !! | CACAGTTGGCAAATTTTAAT+TGG | + | chr8_1:5394441-5394460 | None:intergenic | 30.0% |
| !!! | AGAATTTTTCAAGACACAGT+TGG | + | chr8_1:5394455-5394474 | None:intergenic | 30.0% |
| GAATTAATGGAAGTTGTTGA+TGG | - | chr8_1:5394523-5394542 | Msa1174320:intron | 30.0% | |
| ATTAATGGAAGTTGTTGATG+GGG | - | chr8_1:5394525-5394544 | Msa1174320:intron | 30.0% | |
| ! | GATGGTGAACATTTTATTGA+TGG | - | chr8_1:5394547-5394566 | Msa1174320:intron | 30.0% |
| TCAAATTCCATTCCAATGTT+AGG | + | chr8_1:5394652-5394671 | None:intergenic | 30.0% | |
| CGTGTTAAAAGAATTTGTGA+TGG | - | chr8_1:5394873-5394892 | Msa1174320:intron | 30.0% | |
| !!! | AAGCAAATTTTTTGCCACAA+TGG | - | chr8_1:5395037-5395056 | Msa1174320:intron | 30.0% |
| TATGGAGGATATGAAAACAT+TGG | - | chr8_1:5395068-5395087 | Msa1174320:intron | 30.0% | |
| ! | ATATGAAAACATTGGTTGCT+TGG | - | chr8_1:5395076-5395095 | Msa1174320:intron | 30.0% |
| GAAACCATTTAGATAAAGGT+CGG | - | chr8_1:5395111-5395130 | Msa1174320:CDS | 30.0% | |
| ! | ACATAGAAATTTGGTGGAAG+TGG | + | chr8_1:5393982-5394001 | None:intergenic | 35.0% |
| !! | TTCATGTACCGTTGATTTAG+AGG | - | chr8_1:5394609-5394628 | Msa1174320:intron | 35.0% |
| TCAAGAACCTAACATTGGAA+TGG | - | chr8_1:5394642-5394661 | Msa1174320:intron | 35.0% | |
| ACTCATTATGCTAAGTCAGT+TGG | - | chr8_1:5394699-5394718 | Msa1174320:intron | 35.0% | |
| TATGCTAAGTCAGTTGGATT+TGG | - | chr8_1:5394705-5394724 | Msa1174320:intron | 35.0% | |
| ATGCTAAGTCAGTTGGATTT+GGG | - | chr8_1:5394706-5394725 | Msa1174320:intron | 35.0% | |
| AGTTATGCTTGCACAAGATA+CGG | - | chr8_1:5394783-5394802 | Msa1174320:intron | 35.0% | |
| GGAAAATAATGTGCATATGC+TGG | + | chr8_1:5394948-5394967 | None:intergenic | 35.0% | |
| ! | CATTATTTTCCTTGCCATAG+AGG | - | chr8_1:5394957-5394976 | Msa1174320:intron | 35.0% |
| !! | TTATTGATTCCTCTATGGCA+AGG | + | chr8_1:5394969-5394988 | None:intergenic | 35.0% |
| !! | GAGCTTTATTGATTCCTCTA+TGG | + | chr8_1:5394974-5394993 | None:intergenic | 35.0% |
| ATTGAAACTTTGCACCATGT+TGG | - | chr8_1:5395005-5395024 | Msa1174320:intron | 35.0% | |
| TCCATATTCTTTGTCCATTG+TGG | + | chr8_1:5395054-5395073 | None:intergenic | 35.0% | |
| ACAATGGACAAAGAATATGG+AGG | - | chr8_1:5395053-5395072 | Msa1174320:intron | 35.0% | |
| AGGAGATGCAAATACAATGT+TGG | - | chr8_1:5395151-5395170 | Msa1174320:CDS | 35.0% | |
| ! | ACATAGAAATTTGGTGGAAG+TGG | + | chr8_1:5393982-5394001 | None:intergenic | 35.0% |
| !! | TTCATGTACCGTTGATTTAG+AGG | - | chr8_1:5394609-5394628 | Msa1174320:intron | 35.0% |
| TCAAGAACCTAACATTGGAA+TGG | - | chr8_1:5394642-5394661 | Msa1174320:intron | 35.0% | |
| ACTCATTATGCTAAGTCAGT+TGG | - | chr8_1:5394699-5394718 | Msa1174320:intron | 35.0% | |
| TATGCTAAGTCAGTTGGATT+TGG | - | chr8_1:5394705-5394724 | Msa1174320:intron | 35.0% | |
| ATGCTAAGTCAGTTGGATTT+GGG | - | chr8_1:5394706-5394725 | Msa1174320:intron | 35.0% | |
| AGTTATGCTTGCACAAGATA+CGG | - | chr8_1:5394783-5394802 | Msa1174320:intron | 35.0% | |
| GGAAAATAATGTGCATATGC+TGG | + | chr8_1:5394948-5394967 | None:intergenic | 35.0% | |
| ! | CATTATTTTCCTTGCCATAG+AGG | - | chr8_1:5394957-5394976 | Msa1174320:intron | 35.0% |
| !! | TTATTGATTCCTCTATGGCA+AGG | + | chr8_1:5394969-5394988 | None:intergenic | 35.0% |
| !! | GAGCTTTATTGATTCCTCTA+TGG | + | chr8_1:5394974-5394993 | None:intergenic | 35.0% |
| ATTGAAACTTTGCACCATGT+TGG | - | chr8_1:5395005-5395024 | Msa1174320:intron | 35.0% | |
| TCCATATTCTTTGTCCATTG+TGG | + | chr8_1:5395054-5395073 | None:intergenic | 35.0% | |
| ACAATGGACAAAGAATATGG+AGG | - | chr8_1:5395053-5395072 | Msa1174320:intron | 35.0% | |
| AGGAGATGCAAATACAATGT+TGG | - | chr8_1:5395151-5395170 | Msa1174320:CDS | 35.0% | |
| !! | AGTGGCTTTGAAACAGATGA+TGG | + | chr8_1:5393964-5393983 | None:intergenic | 40.0% |
| CTTGTTGGTATGGTACTTGA+TGG | - | chr8_1:5394022-5394041 | Msa1174320:CDS | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr8_1:5394368-5394387 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr8_1:5394376-5394395 | Msa1174320:CDS | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr8_1:5394379-5394398 | Msa1174320:CDS | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr8_1:5394402-5394421 | Msa1174320:intron | 40.0% | |
| !! | ACCGTTGATTTAGAGGCTAA+CGG | - | chr8_1:5394616-5394635 | Msa1174320:intron | 40.0% |
| ! | ACCGTTAGCCTCTAAATCAA+CGG | + | chr8_1:5394620-5394639 | None:intergenic | 40.0% |
| ! | AAATCCACGTCCTTGTTTGA+AGG | - | chr8_1:5394830-5394849 | Msa1174320:intron | 40.0% |
| CTGGAAAAAGTTCGTGATTG+TGG | + | chr8_1:5394929-5394948 | None:intergenic | 40.0% | |
| GCCACAATGGACAAAGAATA+TGG | - | chr8_1:5395050-5395069 | Msa1174320:intron | 40.0% | |
| AACGCCGACCTTTATCTAAA+TGG | + | chr8_1:5395118-5395137 | None:intergenic | 40.0% | |
| TTTAGATAAAGGTCGGCGTT+TGG | - | chr8_1:5395118-5395137 | Msa1174320:CDS | 40.0% | |
| !! | AGTGGCTTTGAAACAGATGA+TGG | + | chr8_1:5393964-5393983 | None:intergenic | 40.0% |
| CTTGTTGGTATGGTACTTGA+TGG | - | chr8_1:5394022-5394041 | Msa1174320:CDS | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr8_1:5394368-5394387 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr8_1:5394376-5394395 | Msa1174320:CDS | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr8_1:5394379-5394398 | Msa1174320:CDS | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr8_1:5394402-5394421 | Msa1174320:intron | 40.0% | |
| !! | ACCGTTGATTTAGAGGCTAA+CGG | - | chr8_1:5394616-5394635 | Msa1174320:intron | 40.0% |
| ! | ACCGTTAGCCTCTAAATCAA+CGG | + | chr8_1:5394620-5394639 | None:intergenic | 40.0% |
| ! | AAATCCACGTCCTTGTTTGA+AGG | - | chr8_1:5394830-5394849 | Msa1174320:intron | 40.0% |
| CTGGAAAAAGTTCGTGATTG+TGG | + | chr8_1:5394929-5394948 | None:intergenic | 40.0% | |
| GCCACAATGGACAAAGAATA+TGG | - | chr8_1:5395050-5395069 | Msa1174320:intron | 40.0% | |
| AACGCCGACCTTTATCTAAA+TGG | + | chr8_1:5395118-5395137 | None:intergenic | 40.0% | |
| TTTAGATAAAGGTCGGCGTT+TGG | - | chr8_1:5395118-5395137 | Msa1174320:CDS | 40.0% | |
| CACCAACAATGGTTTGACGA+CGG | + | chr8_1:5393938-5393957 | None:intergenic | 45.0% | |
| ! | GATGATGGCAACACCAACAA+TGG | + | chr8_1:5393949-5393968 | None:intergenic | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr8_1:5394396-5394415 | Msa1174320:intron | 45.0% |
| ! | ATGGAAGTTGTTGATGGGGA+TGG | - | chr8_1:5394529-5394548 | Msa1174320:intron | 45.0% |
| GAATGAAGAGCAAGCTGTCA+AGG | - | chr8_1:5394570-5394589 | Msa1174320:intron | 45.0% | |
| ! | GTTGATTTAGAGGCTAACGG+TGG | - | chr8_1:5394619-5394638 | Msa1174320:intron | 45.0% |
| GGTGGTCAAGAACCTAACAT+TGG | - | chr8_1:5394637-5394656 | Msa1174320:intron | 45.0% | |
| ! | AGGACGTGGATTTTGTGAAC+TGG | + | chr8_1:5394823-5394842 | None:intergenic | 45.0% |
| TCACATCCCACCTTCAAACA+AGG | + | chr8_1:5394843-5394862 | None:intergenic | 45.0% | |
| TTGTTTGAAGGTGGGATGTG+AGG | - | chr8_1:5394842-5394861 | Msa1174320:intron | 45.0% | |
| TGCTTGTTCTCACTCCAACA+TGG | + | chr8_1:5395022-5395041 | None:intergenic | 45.0% | |
| CACCAACAATGGTTTGACGA+CGG | + | chr8_1:5393938-5393957 | None:intergenic | 45.0% | |
| ! | GATGATGGCAACACCAACAA+TGG | + | chr8_1:5393949-5393968 | None:intergenic | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr8_1:5394396-5394415 | Msa1174320:intron | 45.0% |
| ! | ATGGAAGTTGTTGATGGGGA+TGG | - | chr8_1:5394529-5394548 | Msa1174320:intron | 45.0% |
| GAATGAAGAGCAAGCTGTCA+AGG | - | chr8_1:5394570-5394589 | Msa1174320:intron | 45.0% | |
| ! | GTTGATTTAGAGGCTAACGG+TGG | - | chr8_1:5394619-5394638 | Msa1174320:intron | 45.0% |
| GGTGGTCAAGAACCTAACAT+TGG | - | chr8_1:5394637-5394656 | Msa1174320:intron | 45.0% | |
| ! | AGGACGTGGATTTTGTGAAC+TGG | + | chr8_1:5394823-5394842 | None:intergenic | 45.0% |
| TCACATCCCACCTTCAAACA+AGG | + | chr8_1:5394843-5394862 | None:intergenic | 45.0% | |
| TTGTTTGAAGGTGGGATGTG+AGG | - | chr8_1:5394842-5394861 | Msa1174320:intron | 45.0% | |
| TGCTTGTTCTCACTCCAACA+TGG | + | chr8_1:5395022-5395041 | None:intergenic | 45.0% | |
| !!! | TTTTTAATGTTTATTTTATT+CGG | - | chr8_1:5394168-5394187 | Msa1174320:CDS | 5.0% |
| !!! | TTTTTAATGTTTATTTTATT+CGG | - | chr8_1:5394168-5394187 | Msa1174320:CDS | 5.0% |
| CAACAATGGTTTGACGACGG+TGG | + | chr8_1:5393935-5393954 | None:intergenic | 50.0% | |
| CACCGTCGTCAAACCATTGT+TGG | - | chr8_1:5393933-5393952 | Msa1174320:CDS | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr8_1:5394384-5394403 | Msa1174320:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr8_1:5394389-5394408 | None:intergenic | 50.0% | |
| ! | TCCACGTCCTTGTTTGAAGG+TGG | - | chr8_1:5394833-5394852 | Msa1174320:intron | 50.0% |
| ! | CCACGTCCTTGTTTGAAGGT+GGG | - | chr8_1:5394834-5394853 | Msa1174320:intron | 50.0% |
| !! | CGGCGTTTGGCTTTAGAATC+AGG | - | chr8_1:5395131-5395150 | Msa1174320:CDS | 50.0% |
| CAACAATGGTTTGACGACGG+TGG | + | chr8_1:5393935-5393954 | None:intergenic | 50.0% | |
| CACCGTCGTCAAACCATTGT+TGG | - | chr8_1:5393933-5393952 | Msa1174320:CDS | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr8_1:5394384-5394403 | Msa1174320:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr8_1:5394389-5394408 | None:intergenic | 50.0% | |
| ! | TCCACGTCCTTGTTTGAAGG+TGG | - | chr8_1:5394833-5394852 | Msa1174320:intron | 50.0% |
| ! | CCACGTCCTTGTTTGAAGGT+GGG | - | chr8_1:5394834-5394853 | Msa1174320:intron | 50.0% |
| !! | CGGCGTTTGGCTTTAGAATC+AGG | - | chr8_1:5395131-5395150 | Msa1174320:CDS | 50.0% |
| CCCACCTTCAAACAAGGACG+TGG | + | chr8_1:5394837-5394856 | None:intergenic | 55.0% | |
| CCCACCTTCAAACAAGGACG+TGG | + | chr8_1:5394837-5394856 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 5393916 | 5395199 | 5393916 | ID=Msa1174320;Name=Msa1174320 |
| chr8_1 | mRNA | 5393916 | 5395199 | 5393916 | ID=Msa1174320-mRNA-1;Parent=Msa1174320;Name=Msa1174320-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.5|1|1|2|0|193 |
| chr8_1 | exon | 5395104 | 5395199 | 5395104 | ID=Msa1174320-mRNA-1:exon:1828;Parent=Msa1174320-mRNA-1 |
| chr8_1 | exon | 5393916 | 5394401 | 5393916 | ID=Msa1174320-mRNA-1:exon:1827;Parent=Msa1174320-mRNA-1 |
| chr8_1 | CDS | 5395104 | 5395199 | 5395104 | ID=Msa1174320-mRNA-1:cds;Parent=Msa1174320-mRNA-1 |
| chr8_1 | CDS | 5393916 | 5394401 | 5393916 | ID=Msa1174320-mRNA-1:cds;Parent=Msa1174320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
