AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1276080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1276080 MtrunA17_Chr8g0343431 93.930 313 14 4 1 313 27 334 0.0 582
Msa1276080 MtrunA17_Chr8g0343401 68.493 146 8 1 168 313 14 121 2.53e-59 186
Msa1276080 MtrunA17_Chr8g0343411 73.134 67 4 1 99 165 2 54 2.41e-23 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1276080 AT1G72640.1 58.333 300 109 4 25 310 14 311 2.74e-115 335
Msa1276080 AT1G72640.2 57.912 297 114 3 25 310 14 310 3.18e-111 325
Msa1276080 AT1G72640.3 59.244 238 86 3 25 251 14 251 4.67e-87 262
Msa1276080 AT1G72640.4 58.791 182 64 3 25 195 14 195 1.65e-59 189

Find 73 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTCACTGGTCCTGATTA+TGG 0.281024 8_3:+10553612 None:intergenic
TAAGACATGCAGTCAAAATA+TGG 0.328788 8_3:-10553194 Msa1276080:three_prime_UTR
AGAGTTGCACTTGAAGCCTT+TGG 0.333886 8_3:-10554770 Msa1276080:CDS
TGAAGTTAGGGATGCAGTTC+TGG 0.336303 8_3:-10555733 Msa1276080:CDS
TCAAAGCAGAAGATGAAGTT+AGG 0.347098 8_3:-10555746 Msa1276080:intron
TCTAGTGTGGGTAGCCTTCA+AGG 0.356340 8_3:-10553836 Msa1276080:CDS
GTGGTCCAAAATTAAGAAAA+TGG 0.361201 8_3:-10556446 Msa1276080:CDS
TGTAAACAAATCTCGAATAA+AGG 0.361254 8_3:-10554810 Msa1276080:CDS
AGCAAGATGAATCTGTATTA+AGG 0.362895 8_3:-10553654 Msa1276080:CDS
TCCAGATTGGAAAGAGTGTT+TGG 0.369080 8_3:-10553265 Msa1276080:CDS
CTGGAGTTTGTCCCACAAAC+TGG 0.373437 8_3:-10553324 Msa1276080:CDS
TCAGTTTATAGTGGTAAAAC+TGG 0.374312 8_3:-10553718 Msa1276080:CDS
CAAATTCTTGATTACATTGA+AGG 0.375448 8_3:-10556628 Msa1276080:intron
TTCACTTCATCAACACCATT+TGG 0.402060 8_3:-10556751 Msa1276080:CDS
GCCAAACACTCTTTCCAATC+TGG 0.419948 8_3:+10553264 None:intergenic
ACAAACCAACATATGAAGAT+TGG 0.433596 8_3:+10553099 None:intergenic
TCATATTTGAAGTGGCCAAT+GGG 0.437864 8_3:-10553299 Msa1276080:CDS
TTTGTTTCTTCCCGCTAGAA+TGG 0.448245 8_3:+10556845 None:intergenic
CAAATCTCGAATAAAGGCCT+TGG 0.457321 8_3:-10554804 Msa1276080:CDS
CTTTATGTATCAAGTGCAAA+TGG 0.457396 8_3:-10553033 Msa1276080:three_prime_UTR
CCACATGCTTTACCCCTTGA+AGG 0.458656 8_3:+10553822 None:intergenic
TTGCAGTTGTCAGTTTATAG+TGG 0.466226 8_3:-10553727 Msa1276080:intron
TAGAACTTTATTAACATATG+TGG 0.467523 8_3:+10552917 None:intergenic
AGAGTGTTTGGCGACATTGA+TGG 0.470231 8_3:-10553253 Msa1276080:CDS
GAATTCCTTACACCATAATC+AGG 0.473114 8_3:-10553624 Msa1276080:CDS
CAAATATGAGTCCAGTTTGT+GGG 0.478466 8_3:+10553313 None:intergenic
ACAGATGGAGATAGTGAGAT+TGG 0.481708 8_3:-10555708 Msa1276080:CDS
CTGGTCCTGATTATGGTGTA+AGG 0.485068 8_3:+10553619 None:intergenic
TTACAGGGTTGTGCAGCTAC+TGG 0.493049 8_3:-10553390 Msa1276080:intron
TGGAGATAGTGAGATTGGTC+AGG 0.495077 8_3:-10555703 Msa1276080:intron
CTCATATTTGAAGTGGCCAA+TGG 0.498498 8_3:-10553300 Msa1276080:CDS
TAATACAGATTCATCTTGCT+CGG 0.502809 8_3:+10553657 None:intergenic
GGGAAAATAAAATTCCAGAT+TGG 0.508417 8_3:-10553278 Msa1276080:CDS
GCAGTCCAATCTTCATATGT+TGG 0.513423 8_3:-10553104 Msa1276080:three_prime_UTR
CAAAGCAGAAGATGAAGTTA+GGG 0.519708 8_3:-10555745 Msa1276080:intron
GAATCTGTATTAAGGAGCTC+AGG 0.521293 8_3:-10553646 Msa1276080:CDS
CTAGTGTGGGTAGCCTTCAA+GGG 0.521406 8_3:-10553835 Msa1276080:CDS
TCTGTTGTTGAATAGAAAAG+AGG 0.522412 8_3:+10556726 None:intergenic
AAAATGAAGATACACGAACT+TGG 0.523678 8_3:+10553060 None:intergenic
TCAAATATGAGTCCAGTTTG+TGG 0.524055 8_3:+10553312 None:intergenic
AGGTGTATCTTGTAATTCAC+TGG 0.526184 8_3:+10553600 None:intergenic
AATAGAAAAGAGGAACCAAA+TGG 0.536283 8_3:+10556736 None:intergenic
TCGAATAAAGGCCTTGGTGA+AGG 0.540785 8_3:-10554798 Msa1276080:CDS
GTTCGTATGTGTAAAAGCAC+TGG 0.556625 8_3:-10553343 Msa1276080:CDS
CTTATGAATGTTCATTGAAG+AGG 0.559175 8_3:+10553213 None:intergenic
GTAAAGCCTTGCTTCCCACC+AGG 0.563520 8_3:+10553580 None:intergenic
GATACACCTGGTGGGAAGCA+AGG 0.563577 8_3:-10553586 Msa1276080:CDS
GCGGGAAGAAACAAAACGGT+TGG 0.563832 8_3:-10556837 Msa1276080:five_prime_UTR
TACCTCAACATAATTTCCAA+AGG 0.573481 8_3:+10554754 None:intergenic
GGAAGAAACAAAACGGTTGG+AGG 0.574452 8_3:-10556834 Msa1276080:five_prime_UTR
GTTATGGCAAAGTCAATGAC+AGG 0.581417 8_3:-10554631 Msa1276080:intron
CTCCTCTCAACGCTTTCTTG+AGG 0.581697 8_3:+10554587 None:intergenic
ATCACCATCATCACTAGCTG+TGG 0.584131 8_3:+10556386 None:intergenic
GCATGTGGTCCTCTTATCAC+AGG 0.589532 8_3:-10553807 Msa1276080:intron
GATGCAGTTCTGGTAACAGA+TGG 0.589928 8_3:-10555723 Msa1276080:CDS
CCAAAATTAAGAAAATGGTA+TGG 0.590628 8_3:-10556441 Msa1276080:CDS
AACTGGACTCATATTTGAAG+TGG 0.599321 8_3:-10553307 Msa1276080:CDS
GATAGACTGTACCTTGTCAA+AGG 0.604887 8_3:+10553558 None:intergenic
AATGCATTATCCATTCTAGC+GGG 0.614894 8_3:-10556855 Msa1276080:five_prime_UTR
TCTAGCGGGAAGAAACAAAA+CGG 0.621394 8_3:-10556841 Msa1276080:five_prime_UTR
ACTTCCACAGCTAGTGATGA+TGG 0.621845 8_3:-10556390 Msa1276080:CDS
TTCCTCAAGAAAGCGTTGAG+AGG 0.628467 8_3:-10554589 Msa1276080:CDS
GCAAGGCTTTACCTTTGACA+AGG 0.631220 8_3:-10553569 Msa1276080:intron
TAGTGTGGGTAGCCTTCAAG+GGG 0.640736 8_3:-10553834 Msa1276080:CDS
CATATTTGAAGTGGCCAATG+GGG 0.643386 8_3:-10553298 Msa1276080:CDS
AGCCTTTGGAAATTATGTTG+AGG 0.649082 8_3:-10554756 Msa1276080:intron
AAATGCATTATCCATTCTAG+CGG 0.650063 8_3:-10556856 Msa1276080:five_prime_UTR
AAGCTTTGTGAGTGAAAGTG+TGG 0.651347 8_3:+10556780 None:intergenic
AATGGTGTTGATGAAGTGAA+AGG 0.657210 8_3:+10556754 None:intergenic
CCTTCAAGGGGTAAAGCATG+TGG 0.665023 8_3:-10553822 Msa1276080:CDS
AATTACAAGATACACCTGGT+GGG 0.698521 8_3:-10553594 Msa1276080:CDS
GAATTACAAGATACACCTGG+TGG 0.706658 8_3:-10553595 Msa1276080:CDS
AGTGAATTACAAGATACACC+TGG 0.736388 8_3:-10553598 Msa1276080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATATATATATATTT+TGG - chr8_3:10553218-10553237 Msa1276080:exon 0.0%
!!! TTTTTATGTTTTTCAATTTC+TGG - chr8_3:10553261-10553280 Msa1276080:CDS 15.0%
!!! TTTTATGTTTTTCAATTTCT+GGG - chr8_3:10553262-10553281 Msa1276080:CDS 15.0%
!! TTTACAACAATAGATAAATA+AGG - chr8_3:10553501-10553520 Msa1276080:intron 15.0%
!!! TTGTTTTCATATACAATAAA+GGG - chr8_3:10553552-10553571 Msa1276080:intron 15.0%
!! ATACAATATTGAAGAATTTA+TGG - chr8_3:10553765-10553784 Msa1276080:intron 15.0%
!!! AATCACTATATATCATTTTA+GGG + chr8_3:10553914-10553933 None:intergenic 15.0%
!! AAATGTTGGAAATTTAAAAA+AGG + chr8_3:10554293-10554312 None:intergenic 15.0%
!! AAAATCAATACTTTAATGTT+CGG + chr8_3:10554335-10554354 None:intergenic 15.0%
!!! ATTAAGTTAATATCTTTTAG+AGG + chr8_3:10555059-10555078 None:intergenic 15.0%
!!! TGACTTTTTTAATTTTTCTA+TGG + chr8_3:10555584-10555603 None:intergenic 15.0%
!! ATAGAAAAATTAAAAAAGTC+AGG - chr8_3:10555583-10555602 Msa1276080:intron 15.0%
!!! TTTTGATTCTGTGTTTAATT+AGG - chr8_3:10553299-10553318 Msa1276080:CDS 20.0%
!! TTGTAAAAATAGCTTATAAC+AGG + chr8_3:10553488-10553507 None:intergenic 20.0%
!!! GTTGTTTTCATATACAATAA+AGG - chr8_3:10553551-10553570 Msa1276080:intron 20.0%
!!! GAATCACTATATATCATTTT+AGG + chr8_3:10553915-10553934 None:intergenic 20.0%
!! ACAAATGCTTTATGTTTATA+TGG - chr8_3:10553935-10553954 Msa1276080:intron 20.0%
!! CAAATGCTTTATGTTTATAT+GGG - chr8_3:10553936-10553955 Msa1276080:intron 20.0%
!! AAATGCTTTATGTTTATATG+GGG - chr8_3:10553937-10553956 Msa1276080:intron 20.0%
!!! TTACCAATAGTGATTTTATT+TGG - chr8_3:10553989-10554008 Msa1276080:intron 20.0%
!! TAATCTATTCAATCAAATGT+TGG + chr8_3:10554307-10554326 None:intergenic 20.0%
!!! AGCATAAAAGTTTTTCATAT+AGG - chr8_3:10554481-10554500 Msa1276080:intron 20.0%
!!! AATTATCAGATTCTAGAATA+TGG + chr8_3:10554871-10554890 None:intergenic 20.0%
!! AAAGCTAAATTTCATTGAAA+AGG + chr8_3:10555285-10555304 None:intergenic 20.0%
!! CAACAAAGAAAAATGAATAT+AGG + chr8_3:10555490-10555509 None:intergenic 20.0%
!! ATGAAATCAAAGCTTATATT+TGG + chr8_3:10555545-10555564 None:intergenic 20.0%
!!! TCAAACAATTTTCTGAAAAA+TGG - chr8_3:10555872-10555891 Msa1276080:intron 20.0%
!! ACTTTATTAAAACAGAACAA+AGG + chr8_3:10556021-10556040 None:intergenic 20.0%
!! ATATTTGTGTTTACTATTAC+AGG - chr8_3:10556361-10556380 Msa1276080:intron 20.0%
!! TATTTGTGTTTACTATTACA+GGG - chr8_3:10556362-10556381 Msa1276080:intron 20.0%
!!! AAATCATGAGTTTTTTGAAA+TGG + chr8_3:10556768-10556787 None:intergenic 20.0%
!! TAGAACTTTATTAACATATG+TGG + chr8_3:10556853-10556872 None:intergenic 20.0%
! ACATACAAAAAGAAATGGAA+CGG + chr8_3:10553089-10553108 None:intergenic 25.0%
! TGTCATGCTAAGAAAAAAAT+CGG - chr8_3:10553106-10553125 Msa1276080:three_prime_UTR 25.0%
! CAAATTCTTGATTACATTGA+AGG - chr8_3:10553139-10553158 Msa1276080:three_prime_UTR 25.0%
!! CCATACCATTTTCTTAATTT+TGG + chr8_3:10553329-10553348 None:intergenic 25.0%
! CCAAAATTAAGAAAATGGTA+TGG - chr8_3:10553326-10553345 Msa1276080:CDS 25.0%
! TTAAGCTGTTTATCCAAAAA+GGG + chr8_3:10553428-10553447 None:intergenic 25.0%
! ATTAAGCTGTTTATCCAAAA+AGG + chr8_3:10553429-10553448 None:intergenic 25.0%
! AAGCCAAATAAAATCACTAT+TGG + chr8_3:10553995-10554014 None:intergenic 25.0%
!! AATGAAAAAGGGTGTAAAAA+AGG + chr8_3:10554098-10554117 None:intergenic 25.0%
! TTATTCTATGGGATATATCA+AGG + chr8_3:10554178-10554197 None:intergenic 25.0%
! CCATTTAACTGTTATTCTAT+GGG + chr8_3:10554189-10554208 None:intergenic 25.0%
! ACCATTTAACTGTTATTCTA+TGG + chr8_3:10554190-10554209 None:intergenic 25.0%
!!! AAATTTATTAAGGCCTTGTT+TGG - chr8_3:10554433-10554452 Msa1276080:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG + chr8_3:10554449-10554468 None:intergenic 25.0%
! TATTTATAAGCTCTTCCAAA+TGG - chr8_3:10554644-10554663 Msa1276080:intron 25.0%
! TAATTTCTTGTGATACCATT+TGG + chr8_3:10554662-10554681 None:intergenic 25.0%
!! CTGACTTTTATTGTGTTTTT+TGG - chr8_3:10554905-10554924 Msa1276080:intron 25.0%
! TGTAAACAAATCTCGAATAA+AGG - chr8_3:10554957-10554976 Msa1276080:intron 25.0%
!! TTATTGATTACACGTTGTTA+TGG - chr8_3:10555120-10555139 Msa1276080:intron 25.0%
!!! TGAAATTTAGCTTTTTGTCA+AGG - chr8_3:10555291-10555310 Msa1276080:intron 25.0%
! TCCTTTCTGTTAAGTATTTA+TGG - chr8_3:10555445-10555464 Msa1276080:intron 25.0%
! TCCATAAATACTTAACAGAA+AGG + chr8_3:10555449-10555468 None:intergenic 25.0%
! AATCAAAGCTTATATTTGGA+AGG + chr8_3:10555541-10555560 None:intergenic 25.0%
! CATTAAAAGAAATGAACTCA+GGG + chr8_3:10555801-10555820 None:intergenic 25.0%
! TCATTAAAAGAAATGAACTC+AGG + chr8_3:10555802-10555821 None:intergenic 25.0%
!! CAATAATTTTGTTCAGATGA+AGG + chr8_3:10556804-10556823 None:intergenic 25.0%
AAATGCATTATCCATTCTAG+CGG - chr8_3:10552911-10552930 Msa1276080:three_prime_UTR 30.0%
AATAGAAAAGAGGAACCAAA+TGG + chr8_3:10553034-10553053 None:intergenic 30.0%
TCTGTTGTTGAATAGAAAAG+AGG + chr8_3:10553044-10553063 None:intergenic 30.0%
GCATGACATACAAAAAGAAA+TGG + chr8_3:10553094-10553113 None:intergenic 30.0%
!! TTACATTGAAGGTACTTACT+TGG - chr8_3:10553150-10553169 Msa1276080:three_prime_UTR 30.0%
TGATTCTGTGTTTAATTAGG+TGG - chr8_3:10553302-10553321 Msa1276080:CDS 30.0%
GTGGTCCAAAATTAAGAAAA+TGG - chr8_3:10553321-10553340 Msa1276080:CDS 30.0%
AAAAAGGGTCTTAATTTACC+TGG + chr8_3:10553413-10553432 None:intergenic 30.0%
! AGGTAAATTAAGACCCTTTT+TGG - chr8_3:10553412-10553431 Msa1276080:intron 30.0%
ACAGGCACTTATAAAATAAG+CGG + chr8_3:10553470-10553489 None:intergenic 30.0%
TTGTGTAAAAAAACAGGGTA+AGG + chr8_3:10553652-10553671 None:intergenic 30.0%
ACCTCTTGTGTAAAAAAACA+GGG + chr8_3:10553657-10553676 None:intergenic 30.0%
AACCTCTTGTGTAAAAAAAC+AGG + chr8_3:10553658-10553677 None:intergenic 30.0%
AACAACTCATATTGTAACCT+TGG + chr8_3:10553740-10553759 None:intergenic 30.0%
!! TTGTTGAGAAGTTTTAACAG+TGG - chr8_3:10554140-10554159 Msa1276080:intron 30.0%
CCCATAGAATAACAGTTAAA+TGG - chr8_3:10554186-10554205 Msa1276080:intron 30.0%
AAGCTATCTTGAAAAGCTTA+TGG - chr8_3:10554582-10554601 Msa1276080:CDS 30.0%
TCACATAAGTCAATCAAAAG+CGG - chr8_3:10554697-10554716 Msa1276080:intron 30.0%
AACCCAATAACTGACATTTA+GGG + chr8_3:10554723-10554742 None:intergenic 30.0%
!! TATCAGATTCTAGAATATGG+AGG + chr8_3:10554868-10554887 None:intergenic 30.0%
TACCTCAACATAATTTCCAA+AGG + chr8_3:10555016-10555035 None:intergenic 30.0%
TTTGGAAATTATGTTGAGGT+AGG - chr8_3:10555015-10555034 Msa1276080:intron 30.0%
GGAAGGAACATCAAAATATA+AGG + chr8_3:10555524-10555543 None:intergenic 30.0%
TACATGGAGAGTTAATCTTT+CGG - chr8_3:10555646-10555665 Msa1276080:intron 30.0%
CGAAGTTAAAATTCTGGTAA+AGG + chr8_3:10555760-10555779 None:intergenic 30.0%
AAGGATCGAAGTTAAAATTC+TGG + chr8_3:10555766-10555785 None:intergenic 30.0%
!! GATTGATTTTACTCTTTTCC+AGG - chr8_3:10555897-10555916 Msa1276080:intron 30.0%
!! AAAAAAGTACCTGTGATAAG+AGG + chr8_3:10555972-10555991 None:intergenic 30.0%
TCAGTTTATAGTGGTAAAAC+TGG - chr8_3:10556049-10556068 Msa1276080:intron 30.0%
TAATACAGATTCATCTTGCT+CGG + chr8_3:10556113-10556132 None:intergenic 30.0%
AGCAAGATGAATCTGTATTA+AGG - chr8_3:10556113-10556132 Msa1276080:intron 30.0%
TTATTAAGACGAGTTAGACT+TGG + chr8_3:10556298-10556317 None:intergenic 30.0%
!!! TGGAATTTTATTTTCCCCAT+TGG + chr8_3:10556486-10556505 None:intergenic 30.0%
GGGAAAATAAAATTCCAGAT+TGG - chr8_3:10556489-10556508 Msa1276080:intron 30.0%
CTTATGAATGTTCATTGAAG+AGG + chr8_3:10556557-10556576 None:intergenic 30.0%
TAAGACATGCAGTCAAAATA+TGG - chr8_3:10556573-10556592 Msa1276080:intron 30.0%
ACAAACCAACATATGAAGAT+TGG + chr8_3:10556671-10556690 None:intergenic 30.0%
AAAATGAAGATACACGAACT+TGG + chr8_3:10556710-10556729 None:intergenic 30.0%
CTTTATGTATCAAGTGCAAA+TGG - chr8_3:10556734-10556753 Msa1276080:CDS 30.0%
AATGCATTATCCATTCTAGC+GGG - chr8_3:10552912-10552931 Msa1276080:three_prime_UTR 35.0%
!! AATGGTGTTGATGAAGTGAA+AGG + chr8_3:10553016-10553035 None:intergenic 35.0%
TTCACTTCATCAACACCATT+TGG - chr8_3:10553016-10553035 Msa1276080:three_prime_UTR 35.0%
!!! TGGAAGTACCATCTTTTTCA+AGG + chr8_3:10553364-10553383 None:intergenic 35.0%
ATATACAATAAAGGGCAACC+CGG - chr8_3:10553560-10553579 Msa1276080:intron 35.0%
!!! ACCCTGTTTTTTTACACAAG+AGG - chr8_3:10553653-10553672 Msa1276080:CDS 35.0%
!!! GCTCATTTTAGTTCATCTAC+TGG + chr8_3:10553878-10553897 None:intergenic 35.0%
TCAAAGCAGAAGATGAAGTT+AGG - chr8_3:10554021-10554040 Msa1276080:intron 35.0%
CAAAGCAGAAGATGAAGTTA+GGG - chr8_3:10554022-10554041 Msa1276080:intron 35.0%
GTGAGGCATGTAATGAAAAA+GGG + chr8_3:10554109-10554128 None:intergenic 35.0%
AGTGAGGCATGTAATGAAAA+AGG + chr8_3:10554110-10554129 None:intergenic 35.0%
CAACAACAACTAATCAAGTG+AGG + chr8_3:10554126-10554145 None:intergenic 35.0%
! AACATAACTTCCTTGATTCG+TGG - chr8_3:10554248-10554267 Msa1276080:intron 35.0%
CAACCCAATAACTGACATTT+AGG + chr8_3:10554724-10554743 None:intergenic 35.0%
CTAAATGTCAGTTATTGGGT+TGG - chr8_3:10554722-10554741 Msa1276080:intron 35.0%
AAATTGGATGGTCTAGACTA+TGG + chr8_3:10554752-10554771 None:intergenic 35.0%
TAGACCATCCAATTTGATCT+TGG - chr8_3:10554757-10554776 Msa1276080:CDS 35.0%
CTATCCAAGATCAAATTGGA+TGG + chr8_3:10554764-10554783 None:intergenic 35.0%
TCGACTATCCAAGATCAAAT+TGG + chr8_3:10554768-10554787 None:intergenic 35.0%
!!! TGTTTTTTGGCTTATGCAGA+TGG - chr8_3:10554918-10554937 Msa1276080:intron 35.0%
! AACTCTTTTATCCTTCACCA+AGG + chr8_3:10554983-10555002 None:intergenic 35.0%
! AGCCTTTGGAAATTATGTTG+AGG - chr8_3:10555011-10555030 Msa1276080:intron 35.0%
AACAAACATGTCTAAAGACG+AGG + chr8_3:10555248-10555267 None:intergenic 35.0%
! GACTCTTATTAGCTTATGAG+AGG - chr8_3:10555605-10555624 Msa1276080:intron 35.0%
CTTATGAGAGGAAGACATTA+TGG - chr8_3:10555617-10555636 Msa1276080:intron 35.0%
AGAAATGAACTCAGGGTTAA+AGG + chr8_3:10555794-10555813 None:intergenic 35.0%
! TGATTTTACTCTTTTCCAGG+AGG - chr8_3:10555900-10555919 Msa1276080:intron 35.0%
! GATTTTACTCTTTTCCAGGA+GGG - chr8_3:10555901-10555920 Msa1276080:intron 35.0%
!!! GAGGGTTTTATTTCTAGTGT+GGG - chr8_3:10555919-10555938 Msa1276080:intron 35.0%
TTATCTTTGTGGTGGTACAA+GGG + chr8_3:10555998-10556017 None:intergenic 35.0%
AACAAAGGTTATCTTTGTGG+TGG + chr8_3:10556006-10556025 None:intergenic 35.0%
CAGAACAAAGGTTATCTTTG+TGG + chr8_3:10556009-10556028 None:intergenic 35.0%
TTGCAGTTGTCAGTTTATAG+TGG - chr8_3:10556040-10556059 Msa1276080:intron 35.0%
GAATTCCTTACACCATAATC+AGG - chr8_3:10556143-10556162 Msa1276080:intron 35.0%
TAATTCACTGGTCCTGATTA+TGG + chr8_3:10556158-10556177 None:intergenic 35.0%
AGGTGTATCTTGTAATTCAC+TGG + chr8_3:10556170-10556189 None:intergenic 35.0%
AGTGAATTACAAGATACACC+TGG - chr8_3:10556169-10556188 Msa1276080:intron 35.0%
AATTACAAGATACACCTGGT+GGG - chr8_3:10556173-10556192 Msa1276080:intron 35.0%
CAAATATGAGTCCAGTTTGT+GGG + chr8_3:10556457-10556476 None:intergenic 35.0%
TCAAATATGAGTCCAGTTTG+TGG + chr8_3:10556458-10556477 None:intergenic 35.0%
AACTGGACTCATATTTGAAG+TGG - chr8_3:10556460-10556479 Msa1276080:intron 35.0%
! TCATATTTGAAGTGGCCAAT+GGG - chr8_3:10556468-10556487 Msa1276080:intron 35.0%
! TTTGTTTCTTCCCGCTAGAA+TGG + chr8_3:10552925-10552944 None:intergenic 40.0%
TCTAGCGGGAAGAAACAAAA+CGG - chr8_3:10552926-10552945 Msa1276080:three_prime_UTR 40.0%
! GCACAAACCAAGACCATTTT+TGG + chr8_3:10552962-10552981 None:intergenic 40.0%
! AAGCTTTGTGAGTGAAAGTG+TGG + chr8_3:10552990-10553009 None:intergenic 40.0%
!!! CCATCTTTTTCAAGGAGATC+AGG + chr8_3:10553356-10553375 None:intergenic 40.0%
CCTGATCTCCTTGAAAAAGA+TGG - chr8_3:10553353-10553372 Msa1276080:CDS 40.0%
!! GATGATGGTGATGATTTTCC+AGG - chr8_3:10553392-10553411 Msa1276080:intron 40.0%
! TTACACAAGAGGTTGTTTCC+AGG - chr8_3:10553664-10553683 Msa1276080:CDS 40.0%
TAAAGTTGTTGCCATGTGAC+TGG + chr8_3:10553708-10553727 None:intergenic 40.0%
ACAGATGGAGATAGTGAGAT+TGG - chr8_3:10554059-10554078 Msa1276080:intron 40.0%
GGCCCTAAATGTCAGTTATT+GGG - chr8_3:10554718-10554737 Msa1276080:intron 40.0%
GTCGACAATCTGATTCCTTT+AGG - chr8_3:10554783-10554802 Msa1276080:CDS 40.0%
CAAATCTCGAATAAAGGCCT+TGG - chr8_3:10554963-10554982 Msa1276080:intron 40.0%
GTTATGGCAAAGTCAATGAC+AGG - chr8_3:10555136-10555155 Msa1276080:intron 40.0%
GGCAAGTTATGCATACGTTT+GGG + chr8_3:10555222-10555241 None:intergenic 40.0%
TGGCAAGTTATGCATACGTT+TGG + chr8_3:10555223-10555242 None:intergenic 40.0%
! TAGCTTTTTGTCAAGGCTCA+TGG - chr8_3:10555298-10555317 Msa1276080:intron 40.0%
GACATTATGGCGACTATACA+TGG - chr8_3:10555630-10555649 Msa1276080:intron 40.0%
CACTAGAAATAAAACCCTCC+TGG + chr8_3:10555918-10555937 None:intergenic 40.0%
!!! GGAGGGTTTTATTTCTAGTG+TGG - chr8_3:10555918-10555937 Msa1276080:intron 40.0%
GTTATCTTTGTGGTGGTACA+AGG + chr8_3:10555999-10556018 None:intergenic 40.0%
GAATCTGTATTAAGGAGCTC+AGG - chr8_3:10556121-10556140 Msa1276080:intron 40.0%
GAATTACAAGATACACCTGG+TGG - chr8_3:10556172-10556191 Msa1276080:intron 40.0%
GATAGACTGTACCTTGTCAA+AGG + chr8_3:10556212-10556231 None:intergenic 40.0%
! GTTCGTATGTGTAAAAGCAC+TGG - chr8_3:10556424-10556443 Msa1276080:CDS 40.0%
! CTCATATTTGAAGTGGCCAA+TGG - chr8_3:10556467-10556486 Msa1276080:intron 40.0%
! CATATTTGAAGTGGCCAATG+GGG - chr8_3:10556469-10556488 Msa1276080:intron 40.0%
!! TCCAGATTGGAAAGAGTGTT+TGG - chr8_3:10556502-10556521 Msa1276080:intron 40.0%
GCAGTCCAATCTTCATATGT+TGG - chr8_3:10556663-10556682 Msa1276080:CDS 40.0%
GGAAGAAACAAAACGGTTGG+AGG - chr8_3:10552933-10552952 Msa1276080:three_prime_UTR 45.0%
GAGGAGACCAAAAATGGTCT+TGG - chr8_3:10552952-10552971 Msa1276080:three_prime_UTR 45.0%
ACTTCCACAGCTAGTGATGA+TGG - chr8_3:10553377-10553396 Msa1276080:CDS 45.0%
ATCACCATCATCACTAGCTG+TGG + chr8_3:10553384-10553403 None:intergenic 45.0%
ACTAAAGCTCCCGCATACAT+AGG - chr8_3:10553586-10553605 Msa1276080:CDS 45.0%
CTAAAGCTCCCGCATACATA+GGG - chr8_3:10553587-10553606 Msa1276080:CDS 45.0%
!! GGGTCTCATCATTTGGTGTA+TGG - chr8_3:10553619-10553638 Msa1276080:CDS 45.0%
TATTGTAACCTTGGCGCAAC+TGG + chr8_3:10553731-10553750 None:intergenic 45.0%
TGAAGTTAGGGATGCAGTTC+TGG - chr8_3:10554034-10554053 Msa1276080:intron 45.0%
! GATGCAGTTCTGGTAACAGA+TGG - chr8_3:10554044-10554063 Msa1276080:intron 45.0%
! TGGAGATAGTGAGATTGGTC+AGG - chr8_3:10554064-10554083 Msa1276080:intron 45.0%
CGGCCCTAAATGTCAGTTAT+TGG - chr8_3:10554717-10554736 Msa1276080:intron 45.0%
TCAGACAATGCAACGCCTAA+AGG + chr8_3:10554801-10554820 None:intergenic 45.0%
TCGAATAAAGGCCTTGGTGA+AGG - chr8_3:10554969-10554988 Msa1276080:intron 45.0%
AGAGTTGCACTTGAAGCCTT+TGG - chr8_3:10554997-10555016 Msa1276080:intron 45.0%
!! TTCCTCAAGAAAGCGTTGAG+AGG - chr8_3:10555178-10555197 Msa1276080:intron 45.0%
ACATGTCTAAAGACGAGGCA+TGG + chr8_3:10555243-10555262 None:intergenic 45.0%
CTCAGGGTTAAAGGAGTTGA+AGG + chr8_3:10555785-10555804 None:intergenic 45.0%
CTGGTCCTGATTATGGTGTA+AGG + chr8_3:10556151-10556170 None:intergenic 45.0%
GCAAGGCTTTACCTTTGACA+AGG - chr8_3:10556198-10556217 Msa1276080:intron 45.0%
GCCAAACACTCTTTCCAATC+TGG + chr8_3:10556506-10556525 None:intergenic 45.0%
! AGAGTGTTTGGCGACATTGA+TGG - chr8_3:10556514-10556533 Msa1276080:intron 45.0%
!! TTATAAAGATAAATTTATTA+AGG - chr8_3:10554423-10554442 Msa1276080:intron 5.0%
GCGGGAAGAAACAAAACGGT+TGG - chr8_3:10552930-10552949 Msa1276080:three_prime_UTR 50.0%
CGGTTGGAGGAGACCAAAAA+TGG - chr8_3:10552946-10552965 Msa1276080:three_prime_UTR 50.0%
CAAATGATGAGACCCCTTCC+CGG + chr8_3:10553614-10553633 None:intergenic 50.0%
GTTGTTGCCATGTGACTGGA+AGG + chr8_3:10553704-10553723 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr8_3:10553720-10553739 Msa1276080:CDS 50.0%
GTGATCGAGACCACGAATCA+AGG + chr8_3:10554261-10554280 None:intergenic 50.0%
CTCCTCTCAACGCTTTCTTG+AGG + chr8_3:10555183-10555202 None:intergenic 50.0%
TCTAGTGTGGGTAGCCTTCA+AGG - chr8_3:10555931-10555950 Msa1276080:intron 50.0%
CTAGTGTGGGTAGCCTTCAA+GGG - chr8_3:10555932-10555951 Msa1276080:intron 50.0%
TAGTGTGGGTAGCCTTCAAG+GGG - chr8_3:10555933-10555952 Msa1276080:intron 50.0%
CCACATGCTTTACCCCTTGA+AGG + chr8_3:10555948-10555967 None:intergenic 50.0%
CCTTCAAGGGGTAAAGCATG+TGG - chr8_3:10555945-10555964 Msa1276080:intron 50.0%
GCATGTGGTCCTCTTATCAC+AGG - chr8_3:10555960-10555979 Msa1276080:intron 50.0%
TTACAGGGTTGTGCAGCTAC+TGG - chr8_3:10556377-10556396 Msa1276080:CDS 50.0%
CTGGAGTTTGTCCCACAAAC+TGG - chr8_3:10556443-10556462 Msa1276080:CDS 50.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr8_3:10553582-10553601 None:intergenic 55.0%
TTCCCGGACCCTATGTATGC+GGG + chr8_3:10553598-10553617 None:intergenic 55.0%
CTTCCCGGACCCTATGTATG+CGG + chr8_3:10553599-10553618 None:intergenic 55.0%
GCATACATAGGGTCCGGGAA+GGG - chr8_3:10553598-10553617 Msa1276080:CDS 55.0%
CATACATAGGGTCCGGGAAG+GGG - chr8_3:10553599-10553618 Msa1276080:CDS 55.0%
CGGGAAGGGGTCTCATCATT+TGG - chr8_3:10553612-10553631 Msa1276080:CDS 55.0%
! AAGGTCACGGGTTCTAGTCC+TGG + chr8_3:10553685-10553704 None:intergenic 55.0%
CCATGTGACTGGAAGGTCAC+GGG + chr8_3:10553697-10553716 None:intergenic 55.0%
GCCATGTGACTGGAAGGTCA+CGG + chr8_3:10553698-10553717 None:intergenic 55.0%
GATACACCTGGTGGGAAGCA+AGG - chr8_3:10556181-10556200 Msa1276080:intron 55.0%
GTAAAGCCTTGCTTCCCACC+AGG + chr8_3:10556190-10556209 None:intergenic 55.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr8_3:10553581-10553600 None:intergenic 60.0%
GCTCCCGCATACATAGGGTC+CGG - chr8_3:10553592-10553611 Msa1276080:CDS 60.0%
CTCCCGCATACATAGGGTCC+GGG - chr8_3:10553593-10553612 Msa1276080:CDS 60.0%
CGCATACATAGGGTCCGGGA+AGG - chr8_3:10553597-10553616 Msa1276080:CDS 60.0%
CCCGTGACCTTCCAGTCACA+TGG - chr8_3:10553694-10553713 Msa1276080:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 10552910 10556879 10552910 ID=Msa1276080;Name=Msa1276080
chr8_3 mRNA 10552910 10556879 10552910 ID=Msa1276080-mRNA-1;Parent=Msa1276080;Name=Msa1276080-mRNA-1;_AED=0.19;_eAED=0.19;_QI=55|0.85|0.87|1|1|1|8|314|313
chr8_3 exon 10552910 10553406 10552910 ID=Msa1276080-mRNA-1:exon:4380;Parent=Msa1276080-mRNA-1
chr8_3 exon 10553570 10553743 10553570 ID=Msa1276080-mRNA-1:exon:4379;Parent=Msa1276080-mRNA-1
chr8_3 exon 10553808 10553870 10553808 ID=Msa1276080-mRNA-1:exon:4378;Parent=Msa1276080-mRNA-1
chr8_3 exon 10554564 10554641 10554564 ID=Msa1276080-mRNA-1:exon:4377;Parent=Msa1276080-mRNA-1
chr8_3 exon 10554757 10554852 10554757 ID=Msa1276080-mRNA-1:exon:4376;Parent=Msa1276080-mRNA-1
chr8_3 exon 10555704 10555762 10555704 ID=Msa1276080-mRNA-1:exon:4375;Parent=Msa1276080-mRNA-1
chr8_3 exon 10556376 10556468 10556376 ID=Msa1276080-mRNA-1:exon:4374;Parent=Msa1276080-mRNA-1
chr8_3 exon 10556629 10556879 10556629 ID=Msa1276080-mRNA-1:exon:4373;Parent=Msa1276080-mRNA-1
chr8_3 five_prime_UTR 10556825 10556879 10556825 ID=Msa1276080-mRNA-1:five_prime_utr;Parent=Msa1276080-mRNA-1
chr8_3 CDS 10556629 10556824 10556629 ID=Msa1276080-mRNA-1:cds;Parent=Msa1276080-mRNA-1
chr8_3 CDS 10556376 10556468 10556376 ID=Msa1276080-mRNA-1:cds;Parent=Msa1276080-mRNA-1
chr8_3 CDS 10555704 10555762 10555704 ID=Msa1276080-mRNA-1:cds;Parent=Msa1276080-mRNA-1
chr8_3 CDS 10554757 10554852 10554757 ID=Msa1276080-mRNA-1:cds;Parent=Msa1276080-mRNA-1
chr8_3 CDS 10554564 10554641 10554564 ID=Msa1276080-mRNA-1:cds;Parent=Msa1276080-mRNA-1
chr8_3 CDS 10553808 10553870 10553808 ID=Msa1276080-mRNA-1:cds;Parent=Msa1276080-mRNA-1
chr8_3 CDS 10553570 10553743 10553570 ID=Msa1276080-mRNA-1:cds;Parent=Msa1276080-mRNA-1
chr8_3 CDS 10553224 10553406 10553224 ID=Msa1276080-mRNA-1:cds;Parent=Msa1276080-mRNA-1
chr8_3 three_prime_UTR 10552910 10553223 10552910 ID=Msa1276080-mRNA-1:three_prime_utr;Parent=Msa1276080-mRNA-1
Gene Sequence

>Msa1276080

ATGGTCTTGGTTTGTGCTTCTTCCACACTTTCACTCACAAAGCTTGTTCCTTTCACTTCATCAACACCATTTGGTTCCTCTTTTCTATTCAACAACAGAGACACTAGTGTTTCTTCTGTTGCCGTTCCATTTCTTTTTGTATGTCATGCTAAGAAAAAAATCGGTTTTTTTGATCAAATTCTTGATTACATTGAAGGTGGTCCAAAATTAAGAAAATGGTATGGTGCACCTGATCTCCTTGAAAAAGATGGTACTTCCACAGCTAGTGATGATGGTGATGATTTTCCAGCAGAAGATGAAGTTAGGGATGCAGTTCTGGTAACAGATGGAGATAGTGAGATTGGTCAGATGGTGATATTGTCATTGATTGTAAACAAATCTCGAATAAAGGCCTTGGTGAAGGATAAAAGAGTTGCACTTGAAGCCTTTGGAAATTATGTTGAGTCAATGACAGGAGACACAAGCGACAATCGATTCCTCAAGAAAGCGTTGAGAGGAGTTCGCACAGTTATATGCCCAAACGAGGGTTTTATTTCTAGTGTGGGTAGCCTTCAAGGGGTAAAGCATGTGGTCCTCTTATCACAGTTGTCAGTTTATAGTGGTAAAACTGGCATTGAATCTATGATGAAAAACAATGCAAAGAAATTAGCCGAGCAAGATGAATCTGTATTAAGGAGCTCAGGAATTCCTTACACCATAATCAGGACCAGTGAATTACAAGATACACCTGGTGGGAAGCAAGGCTTTACCTTTGACAAGGGTTGTGCAGCTACTGGAAGTATTAGCAAAGAAGATGTCGCGTTCGTATGTGTAAAAGCACTGGAGTTTGTCCCACAAACTGGACTCATATTTGAAGTGGCCAATGGGGAAAATAAAATTCCAGATTGGAAAGAGTGTTTGGCGACATTGATGGAGAAATCAAGTCAACAACCTCTTCAATGA

Protein sequence

>Msa1276080

MVLVCASSTLSLTKLVPFTSSTPFGSSFLFNNRDTSVSSVAVPFLFVCHAKKKIGFFDQILDYIEGGPKLRKWYGAPDLLEKDGTSTASDDGDDFPAEDEVRDAVLVTDGDSEIGQMVILSLIVNKSRIKALVKDKRVALEAFGNYVESMTGDTSDNRFLKKALRGVRTVICPNEGFISSVGSLQGVKHVVLLSQLSVYSGKTGIESMMKNNAKKLAEQDESVLRSSGIPYTIIRTSELQDTPGGKQGFTFDKGCAATGSISKEDVAFVCVKALEFVPQTGLIFEVANGENKIPDWKECLATLMEKSSQQPLQ*