AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1233770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233770 MtrunA17_Chr8g0343431 93.930 313 14 4 1 313 27 334 0.0 582
Msa1233770 MtrunA17_Chr8g0343401 68.493 146 8 1 168 313 14 121 2.53e-59 186
Msa1233770 MtrunA17_Chr8g0343411 73.134 67 4 1 99 165 2 54 2.41e-23 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233770 AT1G72640.1 58.333 300 109 4 25 310 14 311 2.74e-115 335
Msa1233770 AT1G72640.2 57.912 297 114 3 25 310 14 310 3.18e-111 325
Msa1233770 AT1G72640.3 59.244 238 86 3 25 251 14 251 4.67e-87 262
Msa1233770 AT1G72640.4 58.791 182 64 3 25 195 14 195 1.65e-59 189

Find 73 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTCACTGGTCCTGATTA+TGG 0.281024 8_2:+10776112 None:intergenic
TAAGACATGCAGTCAAAATA+TGG 0.328788 8_2:-10775694 Msa1233770:three_prime_UTR
AGAGTTGCACTTGAAGCCTT+TGG 0.333886 8_2:-10777270 Msa1233770:CDS
TGAAGTTAGGGATGCAGTTC+TGG 0.336303 8_2:-10778233 Msa1233770:CDS
TCAAAGCAGAAGATGAAGTT+AGG 0.347098 8_2:-10778246 Msa1233770:intron
TCTAGTGTGGGTAGCCTTCA+AGG 0.356340 8_2:-10776336 Msa1233770:CDS
GTGGTCCAAAATTAAGAAAA+TGG 0.361201 8_2:-10778946 Msa1233770:CDS
TGTAAACAAATCTCGAATAA+AGG 0.361254 8_2:-10777310 Msa1233770:CDS
AGCAAGATGAATCTGTATTA+AGG 0.362895 8_2:-10776154 Msa1233770:CDS
TCCAGATTGGAAAGAGTGTT+TGG 0.369080 8_2:-10775765 Msa1233770:CDS
CTGGAGTTTGTCCCACAAAC+TGG 0.373437 8_2:-10775824 Msa1233770:CDS
TCAGTTTATAGTGGTAAAAC+TGG 0.374312 8_2:-10776218 Msa1233770:CDS
CAAATTCTTGATTACATTGA+AGG 0.375448 8_2:-10779122 Msa1233770:intron
TTCACTTCATCAACACCATT+TGG 0.402060 8_2:-10779245 Msa1233770:CDS
GCCAAACACTCTTTCCAATC+TGG 0.419948 8_2:+10775764 None:intergenic
ACAAACCAACATATGAAGAT+TGG 0.433596 8_2:+10775599 None:intergenic
TCATATTTGAAGTGGCCAAT+GGG 0.437864 8_2:-10775799 Msa1233770:CDS
TTTGTTTCTTCCCGCTAGAA+TGG 0.448245 8_2:+10779339 None:intergenic
CAAATCTCGAATAAAGGCCT+TGG 0.457321 8_2:-10777304 Msa1233770:CDS
CTTTATGTATCAAGTGCAAA+TGG 0.457396 8_2:-10775533 Msa1233770:three_prime_UTR
CCACATGCTTTACCCCTTGA+AGG 0.458656 8_2:+10776322 None:intergenic
TTGCAGTTGTCAGTTTATAG+TGG 0.466226 8_2:-10776227 Msa1233770:intron
TAGAACTTTATTAACATATG+TGG 0.467523 8_2:+10775417 None:intergenic
AGAGTGTTTGGCGACATTGA+TGG 0.470231 8_2:-10775753 Msa1233770:CDS
GAATTCCTTACACCATAATC+AGG 0.473114 8_2:-10776124 Msa1233770:CDS
CAAATATGAGTCCAGTTTGT+GGG 0.478466 8_2:+10775813 None:intergenic
ACAGATGGAGATAGTGAGAT+TGG 0.481708 8_2:-10778208 Msa1233770:CDS
CTGGTCCTGATTATGGTGTA+AGG 0.485068 8_2:+10776119 None:intergenic
TTACAGGGTTGTGCAGCTAC+TGG 0.493049 8_2:-10775890 Msa1233770:intron
TGGAGATAGTGAGATTGGTC+AGG 0.495077 8_2:-10778203 Msa1233770:intron
CTCATATTTGAAGTGGCCAA+TGG 0.498498 8_2:-10775800 Msa1233770:CDS
TAATACAGATTCATCTTGCT+CGG 0.502809 8_2:+10776157 None:intergenic
GGGAAAATAAAATTCCAGAT+TGG 0.508417 8_2:-10775778 Msa1233770:CDS
GCAGTCCAATCTTCATATGT+TGG 0.513423 8_2:-10775604 Msa1233770:three_prime_UTR
CAAAGCAGAAGATGAAGTTA+GGG 0.519708 8_2:-10778245 Msa1233770:intron
GAATCTGTATTAAGGAGCTC+AGG 0.521293 8_2:-10776146 Msa1233770:CDS
CTAGTGTGGGTAGCCTTCAA+GGG 0.521406 8_2:-10776335 Msa1233770:CDS
TCTGTTGTTGAATAGAAAAG+AGG 0.522412 8_2:+10779220 None:intergenic
AAAATGAAGATACACGAACT+TGG 0.523678 8_2:+10775560 None:intergenic
TCAAATATGAGTCCAGTTTG+TGG 0.524055 8_2:+10775812 None:intergenic
AGGTGTATCTTGTAATTCAC+TGG 0.526184 8_2:+10776100 None:intergenic
AATAGAAAAGAGGAACCAAA+TGG 0.536283 8_2:+10779230 None:intergenic
TCGAATAAAGGCCTTGGTGA+AGG 0.540785 8_2:-10777298 Msa1233770:CDS
GTTCGTATGTGTAAAAGCAC+TGG 0.556625 8_2:-10775843 Msa1233770:CDS
CTTATGAATGTTCATTGAAG+AGG 0.559175 8_2:+10775713 None:intergenic
GTAAAGCCTTGCTTCCCACC+AGG 0.563520 8_2:+10776080 None:intergenic
GATACACCTGGTGGGAAGCA+AGG 0.563577 8_2:-10776086 Msa1233770:CDS
GCGGGAAGAAACAAAACGGT+TGG 0.563832 8_2:-10779331 Msa1233770:five_prime_UTR
TACCTCAACATAATTTCCAA+AGG 0.573481 8_2:+10777254 None:intergenic
GGAAGAAACAAAACGGTTGG+AGG 0.574452 8_2:-10779328 Msa1233770:five_prime_UTR
GTTATGGCAAAGTCAATGAC+AGG 0.581417 8_2:-10777131 Msa1233770:intron
CTCCTCTCAACGCTTTCTTG+AGG 0.581697 8_2:+10777087 None:intergenic
ATCACCATCATCACTAGCTG+TGG 0.584131 8_2:+10778886 None:intergenic
GCATGTGGTCCTCTTATCAC+AGG 0.589532 8_2:-10776307 Msa1233770:intron
GATGCAGTTCTGGTAACAGA+TGG 0.589928 8_2:-10778223 Msa1233770:CDS
CCAAAATTAAGAAAATGGTA+TGG 0.590628 8_2:-10778941 Msa1233770:CDS
AACTGGACTCATATTTGAAG+TGG 0.599321 8_2:-10775807 Msa1233770:CDS
GATAGACTGTACCTTGTCAA+AGG 0.604887 8_2:+10776058 None:intergenic
AATGCATTATCCATTCTAGC+GGG 0.614894 8_2:-10779349 Msa1233770:five_prime_UTR
TCTAGCGGGAAGAAACAAAA+CGG 0.621394 8_2:-10779335 Msa1233770:five_prime_UTR
ACTTCCACAGCTAGTGATGA+TGG 0.621845 8_2:-10778890 Msa1233770:CDS
TTCCTCAAGAAAGCGTTGAG+AGG 0.628467 8_2:-10777089 Msa1233770:CDS
GCAAGGCTTTACCTTTGACA+AGG 0.631220 8_2:-10776069 Msa1233770:intron
TAGTGTGGGTAGCCTTCAAG+GGG 0.640736 8_2:-10776334 Msa1233770:CDS
CATATTTGAAGTGGCCAATG+GGG 0.643386 8_2:-10775798 Msa1233770:CDS
AGCCTTTGGAAATTATGTTG+AGG 0.649082 8_2:-10777256 Msa1233770:intron
AAATGCATTATCCATTCTAG+CGG 0.650063 8_2:-10779350 Msa1233770:five_prime_UTR
AAGCTTTGTGAGTGAAAGTG+TGG 0.651347 8_2:+10779274 None:intergenic
AATGGTGTTGATGAAGTGAA+AGG 0.657210 8_2:+10779248 None:intergenic
CCTTCAAGGGGTAAAGCATG+TGG 0.665023 8_2:-10776322 Msa1233770:CDS
AATTACAAGATACACCTGGT+GGG 0.698521 8_2:-10776094 Msa1233770:CDS
GAATTACAAGATACACCTGG+TGG 0.706658 8_2:-10776095 Msa1233770:CDS
AGTGAATTACAAGATACACC+TGG 0.736388 8_2:-10776098 Msa1233770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATATATATATATTT+TGG - chr8_2:10775712-10775731 Msa1233770:exon 0.0%
!!! TTTTTATGTTTTTCAATTTC+TGG - chr8_2:10775755-10775774 Msa1233770:CDS 15.0%
!!! TTTTATGTTTTTCAATTTCT+GGG - chr8_2:10775756-10775775 Msa1233770:CDS 15.0%
!! TTTACAACAATAGATAAATA+AGG - chr8_2:10775995-10776014 Msa1233770:intron 15.0%
!!! TTGTTTTCATATACAATAAA+GGG - chr8_2:10776046-10776065 Msa1233770:intron 15.0%
!! ATACAATATTGAAGAATTTA+TGG - chr8_2:10776259-10776278 Msa1233770:intron 15.0%
!!! AATCACTATATATCATTTTA+GGG + chr8_2:10776408-10776427 None:intergenic 15.0%
!! AAATGTTGGAAATTTAAAAA+AGG + chr8_2:10776787-10776806 None:intergenic 15.0%
!! AAAATCAATACTTTAATGTT+CGG + chr8_2:10776829-10776848 None:intergenic 15.0%
!!! ATTAAGTTAATATCTTTTAG+AGG + chr8_2:10777553-10777572 None:intergenic 15.0%
!!! TGACTTTTTTAATTTTTCTA+TGG + chr8_2:10778078-10778097 None:intergenic 15.0%
!! ATAGAAAAATTAAAAAAGTC+AGG - chr8_2:10778077-10778096 Msa1233770:intron 15.0%
!!! TTTTGATTCTGTGTTTAATT+AGG - chr8_2:10775793-10775812 Msa1233770:CDS 20.0%
!! TTGTAAAAATAGCTTATAAC+AGG + chr8_2:10775982-10776001 None:intergenic 20.0%
!!! GTTGTTTTCATATACAATAA+AGG - chr8_2:10776045-10776064 Msa1233770:intron 20.0%
!!! GAATCACTATATATCATTTT+AGG + chr8_2:10776409-10776428 None:intergenic 20.0%
!! ACAAATGCTTTATGTTTATA+TGG - chr8_2:10776429-10776448 Msa1233770:intron 20.0%
!! CAAATGCTTTATGTTTATAT+GGG - chr8_2:10776430-10776449 Msa1233770:intron 20.0%
!! AAATGCTTTATGTTTATATG+GGG - chr8_2:10776431-10776450 Msa1233770:intron 20.0%
!!! TTACCAATAGTGATTTTATT+TGG - chr8_2:10776483-10776502 Msa1233770:intron 20.0%
!! TAATCTATTCAATCAAATGT+TGG + chr8_2:10776801-10776820 None:intergenic 20.0%
!!! AGCATAAAAGTTTTTCATAT+AGG - chr8_2:10776975-10776994 Msa1233770:intron 20.0%
!!! AATTATCAGATTCTAGAATA+TGG + chr8_2:10777365-10777384 None:intergenic 20.0%
!! AAAGCTAAATTTCATTGAAA+AGG + chr8_2:10777779-10777798 None:intergenic 20.0%
!! CAACAAAGAAAAATGAATAT+AGG + chr8_2:10777984-10778003 None:intergenic 20.0%
!! ATGAAATCAAAGCTTATATT+TGG + chr8_2:10778039-10778058 None:intergenic 20.0%
!!! TCAAACAATTTTCTGAAAAA+TGG - chr8_2:10778366-10778385 Msa1233770:intron 20.0%
!! ACTTTATTAAAACAGAACAA+AGG + chr8_2:10778515-10778534 None:intergenic 20.0%
!! ATATTTGTGTTTACTATTAC+AGG - chr8_2:10778855-10778874 Msa1233770:intron 20.0%
!! TATTTGTGTTTACTATTACA+GGG - chr8_2:10778856-10778875 Msa1233770:intron 20.0%
!!! AAATCATGAGTTTTTTGAAA+TGG + chr8_2:10779262-10779281 None:intergenic 20.0%
!! TAGAACTTTATTAACATATG+TGG + chr8_2:10779347-10779366 None:intergenic 20.0%
! ACATACAAAAAGAAATGGAA+CGG + chr8_2:10775589-10775608 None:intergenic 25.0%
! TGTCATGCTAAGAAAAAAAT+CGG - chr8_2:10775606-10775625 Msa1233770:three_prime_UTR 25.0%
! CAAATTCTTGATTACATTGA+AGG - chr8_2:10775639-10775658 Msa1233770:three_prime_UTR 25.0%
!! CCATACCATTTTCTTAATTT+TGG + chr8_2:10775823-10775842 None:intergenic 25.0%
! CCAAAATTAAGAAAATGGTA+TGG - chr8_2:10775820-10775839 Msa1233770:CDS 25.0%
! TTAAGCTGTTTATCCAAAAA+GGG + chr8_2:10775922-10775941 None:intergenic 25.0%
! ATTAAGCTGTTTATCCAAAA+AGG + chr8_2:10775923-10775942 None:intergenic 25.0%
! AAGCCAAATAAAATCACTAT+TGG + chr8_2:10776489-10776508 None:intergenic 25.0%
!! AATGAAAAAGGGTGTAAAAA+AGG + chr8_2:10776592-10776611 None:intergenic 25.0%
! TTATTCTATGGGATATATCA+AGG + chr8_2:10776672-10776691 None:intergenic 25.0%
! CCATTTAACTGTTATTCTAT+GGG + chr8_2:10776683-10776702 None:intergenic 25.0%
! ACCATTTAACTGTTATTCTA+TGG + chr8_2:10776684-10776703 None:intergenic 25.0%
!!! AAATTTATTAAGGCCTTGTT+TGG - chr8_2:10776927-10776946 Msa1233770:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG + chr8_2:10776943-10776962 None:intergenic 25.0%
! TATTTATAAGCTCTTCCAAA+TGG - chr8_2:10777138-10777157 Msa1233770:intron 25.0%
! TAATTTCTTGTGATACCATT+TGG + chr8_2:10777156-10777175 None:intergenic 25.0%
!! CTGACTTTTATTGTGTTTTT+TGG - chr8_2:10777399-10777418 Msa1233770:intron 25.0%
! TGTAAACAAATCTCGAATAA+AGG - chr8_2:10777451-10777470 Msa1233770:intron 25.0%
!! TTATTGATTACACGTTGTTA+TGG - chr8_2:10777614-10777633 Msa1233770:intron 25.0%
!!! TGAAATTTAGCTTTTTGTCA+AGG - chr8_2:10777785-10777804 Msa1233770:intron 25.0%
! TCCTTTCTGTTAAGTATTTA+TGG - chr8_2:10777939-10777958 Msa1233770:intron 25.0%
! TCCATAAATACTTAACAGAA+AGG + chr8_2:10777943-10777962 None:intergenic 25.0%
! AATCAAAGCTTATATTTGGA+AGG + chr8_2:10778035-10778054 None:intergenic 25.0%
! CATTAAAAGAAATGAACTCA+GGG + chr8_2:10778295-10778314 None:intergenic 25.0%
! TCATTAAAAGAAATGAACTC+AGG + chr8_2:10778296-10778315 None:intergenic 25.0%
!! CAATAATTTTGTTCAGATGA+AGG + chr8_2:10779298-10779317 None:intergenic 25.0%
AAATGCATTATCCATTCTAG+CGG - chr8_2:10775411-10775430 Msa1233770:three_prime_UTR 30.0%
AATAGAAAAGAGGAACCAAA+TGG + chr8_2:10775534-10775553 None:intergenic 30.0%
TCTGTTGTTGAATAGAAAAG+AGG + chr8_2:10775544-10775563 None:intergenic 30.0%
GCATGACATACAAAAAGAAA+TGG + chr8_2:10775594-10775613 None:intergenic 30.0%
!! TTACATTGAAGGTACTTACT+TGG - chr8_2:10775650-10775669 Msa1233770:three_prime_UTR 30.0%
TGATTCTGTGTTTAATTAGG+TGG - chr8_2:10775796-10775815 Msa1233770:CDS 30.0%
GTGGTCCAAAATTAAGAAAA+TGG - chr8_2:10775815-10775834 Msa1233770:CDS 30.0%
AAAAAGGGTCTTAATTTACC+TGG + chr8_2:10775907-10775926 None:intergenic 30.0%
! AGGTAAATTAAGACCCTTTT+TGG - chr8_2:10775906-10775925 Msa1233770:intron 30.0%
ACAGGCACTTATAAAATAAG+CGG + chr8_2:10775964-10775983 None:intergenic 30.0%
TTGTGTAAAAAAACAGGGTA+AGG + chr8_2:10776146-10776165 None:intergenic 30.0%
ACCTCTTGTGTAAAAAAACA+GGG + chr8_2:10776151-10776170 None:intergenic 30.0%
AACCTCTTGTGTAAAAAAAC+AGG + chr8_2:10776152-10776171 None:intergenic 30.0%
AACAACTCATATTGTAACCT+TGG + chr8_2:10776234-10776253 None:intergenic 30.0%
!! TTGTTGAGAAGTTTTAACAG+TGG - chr8_2:10776634-10776653 Msa1233770:intron 30.0%
CCCATAGAATAACAGTTAAA+TGG - chr8_2:10776680-10776699 Msa1233770:intron 30.0%
AAGCTATCTTGAAAAGCTTA+TGG - chr8_2:10777076-10777095 Msa1233770:CDS 30.0%
TCACATAAGTCAATCAAAAG+CGG - chr8_2:10777191-10777210 Msa1233770:intron 30.0%
AACCCAATAACTGACATTTA+GGG + chr8_2:10777217-10777236 None:intergenic 30.0%
!! TATCAGATTCTAGAATATGG+AGG + chr8_2:10777362-10777381 None:intergenic 30.0%
TACCTCAACATAATTTCCAA+AGG + chr8_2:10777510-10777529 None:intergenic 30.0%
TTTGGAAATTATGTTGAGGT+AGG - chr8_2:10777509-10777528 Msa1233770:intron 30.0%
GGAAGGAACATCAAAATATA+AGG + chr8_2:10778018-10778037 None:intergenic 30.0%
TACATGGAGAGTTAATCTTT+CGG - chr8_2:10778140-10778159 Msa1233770:intron 30.0%
CGAAGTTAAAATTCTGGTAA+AGG + chr8_2:10778254-10778273 None:intergenic 30.0%
AAGGATCGAAGTTAAAATTC+TGG + chr8_2:10778260-10778279 None:intergenic 30.0%
!! GATTGATTTTACTCTTTTCC+AGG - chr8_2:10778391-10778410 Msa1233770:intron 30.0%
!! AAAAAAGTACCTGTGATAAG+AGG + chr8_2:10778466-10778485 None:intergenic 30.0%
TCAGTTTATAGTGGTAAAAC+TGG - chr8_2:10778543-10778562 Msa1233770:intron 30.0%
TAATACAGATTCATCTTGCT+CGG + chr8_2:10778607-10778626 None:intergenic 30.0%
AGCAAGATGAATCTGTATTA+AGG - chr8_2:10778607-10778626 Msa1233770:intron 30.0%
TTATTAAGACGAGTTAGACT+TGG + chr8_2:10778792-10778811 None:intergenic 30.0%
!!! TGGAATTTTATTTTCCCCAT+TGG + chr8_2:10778980-10778999 None:intergenic 30.0%
GGGAAAATAAAATTCCAGAT+TGG - chr8_2:10778983-10779002 Msa1233770:intron 30.0%
CTTATGAATGTTCATTGAAG+AGG + chr8_2:10779051-10779070 None:intergenic 30.0%
TAAGACATGCAGTCAAAATA+TGG - chr8_2:10779067-10779086 Msa1233770:intron 30.0%
ACAAACCAACATATGAAGAT+TGG + chr8_2:10779165-10779184 None:intergenic 30.0%
AAAATGAAGATACACGAACT+TGG + chr8_2:10779204-10779223 None:intergenic 30.0%
CTTTATGTATCAAGTGCAAA+TGG - chr8_2:10779228-10779247 Msa1233770:CDS 30.0%
AATGCATTATCCATTCTAGC+GGG - chr8_2:10775412-10775431 Msa1233770:three_prime_UTR 35.0%
!! AATGGTGTTGATGAAGTGAA+AGG + chr8_2:10775516-10775535 None:intergenic 35.0%
TTCACTTCATCAACACCATT+TGG - chr8_2:10775516-10775535 Msa1233770:three_prime_UTR 35.0%
!!! TGGAAGTACCATCTTTTTCA+AGG + chr8_2:10775858-10775877 None:intergenic 35.0%
ATATACAATAAAGGGCAACC+CGG - chr8_2:10776054-10776073 Msa1233770:intron 35.0%
!!! ACCCTGTTTTTTTACACAAG+AGG - chr8_2:10776147-10776166 Msa1233770:CDS 35.0%
!!! GCTCATTTTAGTTCATCTAC+TGG + chr8_2:10776372-10776391 None:intergenic 35.0%
TCAAAGCAGAAGATGAAGTT+AGG - chr8_2:10776515-10776534 Msa1233770:intron 35.0%
CAAAGCAGAAGATGAAGTTA+GGG - chr8_2:10776516-10776535 Msa1233770:intron 35.0%
GTGAGGCATGTAATGAAAAA+GGG + chr8_2:10776603-10776622 None:intergenic 35.0%
AGTGAGGCATGTAATGAAAA+AGG + chr8_2:10776604-10776623 None:intergenic 35.0%
CAACAACAACTAATCAAGTG+AGG + chr8_2:10776620-10776639 None:intergenic 35.0%
! AACATAACTTCCTTGATTCG+TGG - chr8_2:10776742-10776761 Msa1233770:intron 35.0%
CAACCCAATAACTGACATTT+AGG + chr8_2:10777218-10777237 None:intergenic 35.0%
CTAAATGTCAGTTATTGGGT+TGG - chr8_2:10777216-10777235 Msa1233770:intron 35.0%
AAATTGGATGGTCTAGACTA+TGG + chr8_2:10777246-10777265 None:intergenic 35.0%
TAGACCATCCAATTTGATCT+TGG - chr8_2:10777251-10777270 Msa1233770:intron 35.0%
CTATCCAAGATCAAATTGGA+TGG + chr8_2:10777258-10777277 None:intergenic 35.0%
TCGACTATCCAAGATCAAAT+TGG + chr8_2:10777262-10777281 None:intergenic 35.0%
!!! TGTTTTTTGGCTTATGCAGA+TGG - chr8_2:10777412-10777431 Msa1233770:intron 35.0%
! AACTCTTTTATCCTTCACCA+AGG + chr8_2:10777477-10777496 None:intergenic 35.0%
! AGCCTTTGGAAATTATGTTG+AGG - chr8_2:10777505-10777524 Msa1233770:intron 35.0%
AACAAACATGTCTAAAGACG+AGG + chr8_2:10777742-10777761 None:intergenic 35.0%
! GACTCTTATTAGCTTATGAG+AGG - chr8_2:10778099-10778118 Msa1233770:intron 35.0%
CTTATGAGAGGAAGACATTA+TGG - chr8_2:10778111-10778130 Msa1233770:intron 35.0%
AGAAATGAACTCAGGGTTAA+AGG + chr8_2:10778288-10778307 None:intergenic 35.0%
! TGATTTTACTCTTTTCCAGG+AGG - chr8_2:10778394-10778413 Msa1233770:intron 35.0%
! GATTTTACTCTTTTCCAGGA+GGG - chr8_2:10778395-10778414 Msa1233770:intron 35.0%
!!! GAGGGTTTTATTTCTAGTGT+GGG - chr8_2:10778413-10778432 Msa1233770:intron 35.0%
TTATCTTTGTGGTGGTACAA+GGG + chr8_2:10778492-10778511 None:intergenic 35.0%
AACAAAGGTTATCTTTGTGG+TGG + chr8_2:10778500-10778519 None:intergenic 35.0%
CAGAACAAAGGTTATCTTTG+TGG + chr8_2:10778503-10778522 None:intergenic 35.0%
TTGCAGTTGTCAGTTTATAG+TGG - chr8_2:10778534-10778553 Msa1233770:intron 35.0%
GAATTCCTTACACCATAATC+AGG - chr8_2:10778637-10778656 Msa1233770:intron 35.0%
TAATTCACTGGTCCTGATTA+TGG + chr8_2:10778652-10778671 None:intergenic 35.0%
AGGTGTATCTTGTAATTCAC+TGG + chr8_2:10778664-10778683 None:intergenic 35.0%
AGTGAATTACAAGATACACC+TGG - chr8_2:10778663-10778682 Msa1233770:intron 35.0%
AATTACAAGATACACCTGGT+GGG - chr8_2:10778667-10778686 Msa1233770:intron 35.0%
CAAATATGAGTCCAGTTTGT+GGG + chr8_2:10778951-10778970 None:intergenic 35.0%
TCAAATATGAGTCCAGTTTG+TGG + chr8_2:10778952-10778971 None:intergenic 35.0%
AACTGGACTCATATTTGAAG+TGG - chr8_2:10778954-10778973 Msa1233770:intron 35.0%
! TCATATTTGAAGTGGCCAAT+GGG - chr8_2:10778962-10778981 Msa1233770:intron 35.0%
! TTTGTTTCTTCCCGCTAGAA+TGG + chr8_2:10775425-10775444 None:intergenic 40.0%
TCTAGCGGGAAGAAACAAAA+CGG - chr8_2:10775426-10775445 Msa1233770:three_prime_UTR 40.0%
! GCACAAACCAAGACCATTTT+TGG + chr8_2:10775462-10775481 None:intergenic 40.0%
! AAGCTTTGTGAGTGAAAGTG+TGG + chr8_2:10775490-10775509 None:intergenic 40.0%
!!! CCATCTTTTTCAAGGAGATC+AGG + chr8_2:10775850-10775869 None:intergenic 40.0%
CCTGATCTCCTTGAAAAAGA+TGG - chr8_2:10775847-10775866 Msa1233770:CDS 40.0%
!! GATGATGGTGATGATTTTCC+AGG - chr8_2:10775886-10775905 Msa1233770:CDS 40.0%
! TTACACAAGAGGTTGTTTCC+AGG - chr8_2:10776158-10776177 Msa1233770:CDS 40.0%
TAAAGTTGTTGCCATGTGAC+TGG + chr8_2:10776202-10776221 None:intergenic 40.0%
ACAGATGGAGATAGTGAGAT+TGG - chr8_2:10776553-10776572 Msa1233770:intron 40.0%
GGCCCTAAATGTCAGTTATT+GGG - chr8_2:10777212-10777231 Msa1233770:intron 40.0%
GTCGACAATCTGATTCCTTT+AGG - chr8_2:10777277-10777296 Msa1233770:CDS 40.0%
CAAATCTCGAATAAAGGCCT+TGG - chr8_2:10777457-10777476 Msa1233770:intron 40.0%
GTTATGGCAAAGTCAATGAC+AGG - chr8_2:10777630-10777649 Msa1233770:intron 40.0%
GGCAAGTTATGCATACGTTT+GGG + chr8_2:10777716-10777735 None:intergenic 40.0%
TGGCAAGTTATGCATACGTT+TGG + chr8_2:10777717-10777736 None:intergenic 40.0%
! TAGCTTTTTGTCAAGGCTCA+TGG - chr8_2:10777792-10777811 Msa1233770:intron 40.0%
GACATTATGGCGACTATACA+TGG - chr8_2:10778124-10778143 Msa1233770:intron 40.0%
CACTAGAAATAAAACCCTCC+TGG + chr8_2:10778412-10778431 None:intergenic 40.0%
!!! GGAGGGTTTTATTTCTAGTG+TGG - chr8_2:10778412-10778431 Msa1233770:intron 40.0%
GTTATCTTTGTGGTGGTACA+AGG + chr8_2:10778493-10778512 None:intergenic 40.0%
GAATCTGTATTAAGGAGCTC+AGG - chr8_2:10778615-10778634 Msa1233770:intron 40.0%
GAATTACAAGATACACCTGG+TGG - chr8_2:10778666-10778685 Msa1233770:intron 40.0%
GATAGACTGTACCTTGTCAA+AGG + chr8_2:10778706-10778725 None:intergenic 40.0%
! GTTCGTATGTGTAAAAGCAC+TGG - chr8_2:10778918-10778937 Msa1233770:CDS 40.0%
! CTCATATTTGAAGTGGCCAA+TGG - chr8_2:10778961-10778980 Msa1233770:intron 40.0%
! CATATTTGAAGTGGCCAATG+GGG - chr8_2:10778963-10778982 Msa1233770:intron 40.0%
!! TCCAGATTGGAAAGAGTGTT+TGG - chr8_2:10778996-10779015 Msa1233770:intron 40.0%
GCAGTCCAATCTTCATATGT+TGG - chr8_2:10779157-10779176 Msa1233770:CDS 40.0%
GGAAGAAACAAAACGGTTGG+AGG - chr8_2:10775433-10775452 Msa1233770:three_prime_UTR 45.0%
GAGGAGACCAAAAATGGTCT+TGG - chr8_2:10775452-10775471 Msa1233770:three_prime_UTR 45.0%
ACTTCCACAGCTAGTGATGA+TGG - chr8_2:10775871-10775890 Msa1233770:CDS 45.0%
ATCACCATCATCACTAGCTG+TGG + chr8_2:10775878-10775897 None:intergenic 45.0%
ACTAAAGCTCCCGCATACAT+AGG - chr8_2:10776080-10776099 Msa1233770:CDS 45.0%
CTAAAGCTCCCGCATACATA+GGG - chr8_2:10776081-10776100 Msa1233770:CDS 45.0%
!! GGGTCTCATCATTTGGTGTA+TGG - chr8_2:10776113-10776132 Msa1233770:CDS 45.0%
TATTGTAACCTTGGCGCAAC+TGG + chr8_2:10776225-10776244 None:intergenic 45.0%
TGAAGTTAGGGATGCAGTTC+TGG - chr8_2:10776528-10776547 Msa1233770:intron 45.0%
! GATGCAGTTCTGGTAACAGA+TGG - chr8_2:10776538-10776557 Msa1233770:intron 45.0%
! TGGAGATAGTGAGATTGGTC+AGG - chr8_2:10776558-10776577 Msa1233770:intron 45.0%
CGGCCCTAAATGTCAGTTAT+TGG - chr8_2:10777211-10777230 Msa1233770:intron 45.0%
TCAGACAATGCAACGCCTAA+AGG + chr8_2:10777295-10777314 None:intergenic 45.0%
TCGAATAAAGGCCTTGGTGA+AGG - chr8_2:10777463-10777482 Msa1233770:intron 45.0%
AGAGTTGCACTTGAAGCCTT+TGG - chr8_2:10777491-10777510 Msa1233770:intron 45.0%
!! TTCCTCAAGAAAGCGTTGAG+AGG - chr8_2:10777672-10777691 Msa1233770:intron 45.0%
ACATGTCTAAAGACGAGGCA+TGG + chr8_2:10777737-10777756 None:intergenic 45.0%
CTCAGGGTTAAAGGAGTTGA+AGG + chr8_2:10778279-10778298 None:intergenic 45.0%
CTGGTCCTGATTATGGTGTA+AGG + chr8_2:10778645-10778664 None:intergenic 45.0%
GCAAGGCTTTACCTTTGACA+AGG - chr8_2:10778692-10778711 Msa1233770:intron 45.0%
GCCAAACACTCTTTCCAATC+TGG + chr8_2:10779000-10779019 None:intergenic 45.0%
! AGAGTGTTTGGCGACATTGA+TGG - chr8_2:10779008-10779027 Msa1233770:intron 45.0%
!! TTATAAAGATAAATTTATTA+AGG - chr8_2:10776917-10776936 Msa1233770:intron 5.0%
GCGGGAAGAAACAAAACGGT+TGG - chr8_2:10775430-10775449 Msa1233770:three_prime_UTR 50.0%
CGGTTGGAGGAGACCAAAAA+TGG - chr8_2:10775446-10775465 Msa1233770:three_prime_UTR 50.0%
CAAATGATGAGACCCCTTCC+CGG + chr8_2:10776108-10776127 None:intergenic 50.0%
GTTGTTGCCATGTGACTGGA+AGG + chr8_2:10776198-10776217 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr8_2:10776214-10776233 Msa1233770:CDS 50.0%
GTGATCGAGACCACGAATCA+AGG + chr8_2:10776755-10776774 None:intergenic 50.0%
CTCCTCTCAACGCTTTCTTG+AGG + chr8_2:10777677-10777696 None:intergenic 50.0%
TCTAGTGTGGGTAGCCTTCA+AGG - chr8_2:10778425-10778444 Msa1233770:intron 50.0%
CTAGTGTGGGTAGCCTTCAA+GGG - chr8_2:10778426-10778445 Msa1233770:intron 50.0%
TAGTGTGGGTAGCCTTCAAG+GGG - chr8_2:10778427-10778446 Msa1233770:intron 50.0%
CCACATGCTTTACCCCTTGA+AGG + chr8_2:10778442-10778461 None:intergenic 50.0%
CCTTCAAGGGGTAAAGCATG+TGG - chr8_2:10778439-10778458 Msa1233770:intron 50.0%
GCATGTGGTCCTCTTATCAC+AGG - chr8_2:10778454-10778473 Msa1233770:intron 50.0%
TTACAGGGTTGTGCAGCTAC+TGG - chr8_2:10778871-10778890 Msa1233770:intron 50.0%
CTGGAGTTTGTCCCACAAAC+TGG - chr8_2:10778937-10778956 Msa1233770:CDS 50.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr8_2:10776076-10776095 None:intergenic 55.0%
TTCCCGGACCCTATGTATGC+GGG + chr8_2:10776092-10776111 None:intergenic 55.0%
CTTCCCGGACCCTATGTATG+CGG + chr8_2:10776093-10776112 None:intergenic 55.0%
GCATACATAGGGTCCGGGAA+GGG - chr8_2:10776092-10776111 Msa1233770:CDS 55.0%
CATACATAGGGTCCGGGAAG+GGG - chr8_2:10776093-10776112 Msa1233770:CDS 55.0%
CGGGAAGGGGTCTCATCATT+TGG - chr8_2:10776106-10776125 Msa1233770:CDS 55.0%
! AAGGTCACGGGTTCTAGTCC+TGG + chr8_2:10776179-10776198 None:intergenic 55.0%
CCATGTGACTGGAAGGTCAC+GGG + chr8_2:10776191-10776210 None:intergenic 55.0%
GCCATGTGACTGGAAGGTCA+CGG + chr8_2:10776192-10776211 None:intergenic 55.0%
GATACACCTGGTGGGAAGCA+AGG - chr8_2:10778675-10778694 Msa1233770:intron 55.0%
GTAAAGCCTTGCTTCCCACC+AGG + chr8_2:10778684-10778703 None:intergenic 55.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr8_2:10776075-10776094 None:intergenic 60.0%
GCTCCCGCATACATAGGGTC+CGG - chr8_2:10776086-10776105 Msa1233770:CDS 60.0%
CTCCCGCATACATAGGGTCC+GGG - chr8_2:10776087-10776106 Msa1233770:CDS 60.0%
CGCATACATAGGGTCCGGGA+AGG - chr8_2:10776091-10776110 Msa1233770:CDS 60.0%
CCCGTGACCTTCCAGTCACA+TGG - chr8_2:10776188-10776207 Msa1233770:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 10775410 10779373 10775410 ID=Msa1233770;Name=Msa1233770
chr8_2 mRNA 10775410 10779373 10775410 ID=Msa1233770-mRNA-1;Parent=Msa1233770;Name=Msa1233770-mRNA-1;_AED=0.19;_eAED=0.19;_QI=55|0.85|0.87|1|1|1|8|314|313
chr8_2 exon 10775410 10775906 10775410 ID=Msa1233770-mRNA-1:exon:4202;Parent=Msa1233770-mRNA-1
chr8_2 exon 10776070 10776243 10776070 ID=Msa1233770-mRNA-1:exon:4201;Parent=Msa1233770-mRNA-1
chr8_2 exon 10776308 10776370 10776308 ID=Msa1233770-mRNA-1:exon:4200;Parent=Msa1233770-mRNA-1
chr8_2 exon 10777064 10777141 10777064 ID=Msa1233770-mRNA-1:exon:4199;Parent=Msa1233770-mRNA-1
chr8_2 exon 10777257 10777352 10777257 ID=Msa1233770-mRNA-1:exon:4198;Parent=Msa1233770-mRNA-1
chr8_2 exon 10778204 10778262 10778204 ID=Msa1233770-mRNA-1:exon:4197;Parent=Msa1233770-mRNA-1
chr8_2 exon 10778876 10778968 10778876 ID=Msa1233770-mRNA-1:exon:4196;Parent=Msa1233770-mRNA-1
chr8_2 exon 10779123 10779373 10779123 ID=Msa1233770-mRNA-1:exon:4195;Parent=Msa1233770-mRNA-1
chr8_2 five_prime_UTR 10779319 10779373 10779319 ID=Msa1233770-mRNA-1:five_prime_utr;Parent=Msa1233770-mRNA-1
chr8_2 CDS 10779123 10779318 10779123 ID=Msa1233770-mRNA-1:cds;Parent=Msa1233770-mRNA-1
chr8_2 CDS 10778876 10778968 10778876 ID=Msa1233770-mRNA-1:cds;Parent=Msa1233770-mRNA-1
chr8_2 CDS 10778204 10778262 10778204 ID=Msa1233770-mRNA-1:cds;Parent=Msa1233770-mRNA-1
chr8_2 CDS 10777257 10777352 10777257 ID=Msa1233770-mRNA-1:cds;Parent=Msa1233770-mRNA-1
chr8_2 CDS 10777064 10777141 10777064 ID=Msa1233770-mRNA-1:cds;Parent=Msa1233770-mRNA-1
chr8_2 CDS 10776308 10776370 10776308 ID=Msa1233770-mRNA-1:cds;Parent=Msa1233770-mRNA-1
chr8_2 CDS 10776070 10776243 10776070 ID=Msa1233770-mRNA-1:cds;Parent=Msa1233770-mRNA-1
chr8_2 CDS 10775724 10775906 10775724 ID=Msa1233770-mRNA-1:cds;Parent=Msa1233770-mRNA-1
chr8_2 three_prime_UTR 10775410 10775723 10775410 ID=Msa1233770-mRNA-1:three_prime_utr;Parent=Msa1233770-mRNA-1
Gene Sequence

>Msa1233770

ATGGTCTTGGTTTGTGCTTCTTCCACACTTTCACTCACAAAGCTTGTTCCTTTCACTTCATCAACACCATTTGGTTCCTCTTTTCTATTCAACAACAGAGACACTAGTGTTTCTTCTGTTGCCGTTCCATTTCTTTTTGTATGTCATGCTAAGAAAAAAATCGGTTTTTTTGATCAAATTCTTGATTACATTGAAGGTGGTCCAAAATTAAGAAAATGGTATGGTGCACCTGATCTCCTTGAAAAAGATGGTACTTCCACAGCTAGTGATGATGGTGATGATTTTCCAGCAGAAGATGAAGTTAGGGATGCAGTTCTGGTAACAGATGGAGATAGTGAGATTGGTCAGATGGTGATATTGTCATTGATTGTAAACAAATCTCGAATAAAGGCCTTGGTGAAGGATAAAAGAGTTGCACTTGAAGCCTTTGGAAATTATGTTGAGTCAATGACAGGAGACACAAGCGACAATCGATTCCTCAAGAAAGCGTTGAGAGGAGTTCGCACAGTTATATGCCCAAACGAGGGTTTTATTTCTAGTGTGGGTAGCCTTCAAGGGGTAAAGCATGTGGTCCTCTTATCACAGTTGTCAGTTTATAGTGGTAAAACTGGCATTGAATCTATGATGAAAAACAATGCAAAGAAATTAGCCGAGCAAGATGAATCTGTATTAAGGAGCTCAGGAATTCCTTACACCATAATCAGGACCAGTGAATTACAAGATACACCTGGTGGGAAGCAAGGCTTTACCTTTGACAAGGGTTGTGCAGCTACTGGAAGTATTAGCAAAGAAGATGTCGCGTTCGTATGTGTAAAAGCACTGGAGTTTGTCCCACAAACTGGACTCATATTTGAAGTGGCCAATGGGGAAAATAAAATTCCAGATTGGAAAGAGTGTTTGGCGACATTGATGGAGAAATCAAGTCAACAACCTCTTCAATGA

Protein sequence

>Msa1233770

MVLVCASSTLSLTKLVPFTSSTPFGSSFLFNNRDTSVSSVAVPFLFVCHAKKKIGFFDQILDYIEGGPKLRKWYGAPDLLEKDGTSTASDDGDDFPAEDEVRDAVLVTDGDSEIGQMVILSLIVNKSRIKALVKDKRVALEAFGNYVESMTGDTSDNRFLKKALRGVRTVICPNEGFISSVGSLQGVKHVVLLSQLSVYSGKTGIESMMKNNAKKLAEQDESVLRSSGIPYTIIRTSELQDTPGGKQGFTFDKGCAATGSISKEDVAFVCVKALEFVPQTGLIFEVANGENKIPDWKECLATLMEKSSQQPLQ*