AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450420 MtrunA17_Chr3g0125291 99.065 214 2 0 1 214 1 214 1.69e-162 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450420 AT4G37925.1 57.820 211 81 4 1 208 1 206 7.62e-82 243

Find 69 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAAAAGCACTGGTTTC+TGG 0.141947 tig0032904:-15578 Msa1450420:intergenic
CTTGGTCTATTCTTACTTTC+AGG 0.183071 tig0032904:+15673 Msa1450420:CDS
ACCATATGCATGGGTAAAAT+TGG 0.204397 tig0032904:+15057 Msa1450420:five_prime_UTR
CCAAATTATCCATACAAAAT+TGG 0.229236 tig0032904:+15288 Msa1450420:CDS
CATCAGTAGGATCAAGAATA+AGG 0.246691 tig0032904:-15622 Msa1450420:intergenic
AAGATTTCTTACATAATAAC+TGG 0.309289 tig0032904:-15133 Msa1450420:intergenic
CAAGGCATGACCAGGGAATA+TGG 0.310643 tig0032904:+15497 Msa1450420:CDS
AAGCAATATACAAGTTAATA+AGG 0.311095 tig0032904:+15180 Msa1450420:five_prime_UTR
TAGACCAAGTTGCAAGTATC+AGG 0.336990 tig0032904:-15659 Msa1450420:intergenic
ACCTGAGGTTCAACTGGCCT+TGG 0.343629 tig0032904:-15461 Msa1450420:intergenic
TCTCAAGTACTAGCATCTTC+AGG 0.350319 tig0032904:-16364 Msa1450420:intergenic
GCATGGGTAAAATTGGAAAT+TGG 0.369967 tig0032904:+15064 Msa1450420:five_prime_UTR
GAATACACACTTCGGTTGAT+TGG 0.380394 tig0032904:+16214 Msa1450420:CDS
TGTGGCCATGTTTAATTTAG+TGG 0.390930 tig0032904:-15243 Msa1450420:intergenic
TTCTTACTTTCAGGAGCTTG+TGG 0.404103 tig0032904:+15682 Msa1450420:CDS
ACAATCACCTGAGGTTCAAC+TGG 0.408756 tig0032904:-15467 Msa1450420:intergenic
TCAACAACAATCTGATGTTA+AGG 0.415802 tig0032904:+15364 Msa1450420:CDS
TAGCTTCACTCCTTCTCCTA+TGG 0.430313 tig0032904:-15158 Msa1450420:intergenic
ATAAGAAAGTTGTTATATGA+TGG 0.433915 tig0032904:+16256 Msa1450420:CDS
CGAAGTGTGTATTCATTCAA+TGG 0.452108 tig0032904:-16205 Msa1450420:intergenic
CTTATATTGAGCACTTGCAT+TGG 0.471784 tig0032904:-16554 Msa1450420:intergenic
GGCCACAAGTTGTTCCTACA+TGG 0.484273 tig0032904:+15259 Msa1450420:CDS
GCCCTCATGTAAGTACTTGT+TGG 0.487670 tig0032904:+15202 Msa1450420:five_prime_UTR
CTGAGTTTGATCAAAAGCAC+TGG 0.490193 tig0032904:-15585 Msa1450420:intergenic
TAAGAAAGTTGTTATATGAT+GGG 0.494772 tig0032904:+16257 Msa1450420:CDS
CTCATAATAAACCATATGCA+TGG 0.496482 tig0032904:+15047 Msa1450420:five_prime_UTR
ATCAGTAGGATCAAGAATAA+GGG 0.496505 tig0032904:-15621 Msa1450420:intergenic
CAGGTGATTGTAAAAGATCA+AGG 0.496992 tig0032904:+15479 Msa1450420:CDS
TGTGGTCACAGAAGAAATAC+AGG 0.497348 tig0032904:-15099 Msa1450420:intergenic
AATCAACAAATTAATCCAAA+AGG 0.501012 tig0032904:+15431 Msa1450420:CDS
ACCAAGGCCAGTTGAACCTC+AGG 0.504576 tig0032904:+15460 Msa1450420:CDS
TAACTGGAGGGAAATGTTTG+TGG 0.515918 tig0032904:-15117 Msa1450420:intergenic
TAAAAGATCAAGGCATGACC+AGG 0.521510 tig0032904:+15489 Msa1450420:CDS
TCAAGTATAATATGAATGCA+AGG 0.530324 tig0032904:+16284 Msa1450420:CDS
TGCAAGTGCTCAATATAAGC+AGG 0.536972 tig0032904:+16558 Msa1450420:three_prime_UTR
GAAACAGACGGTGTGAAAGT+AGG 0.560812 tig0032904:+15386 Msa1450420:CDS
CCACTGTCCTCCATATTCCC+TGG 0.567133 tig0032904:-15507 Msa1450420:intergenic
AGGGTTCTGAATTTCAGCAT+GGG 0.568039 tig0032904:+16304 Msa1450420:CDS
CAAGTATAATATGAATGCAA+GGG 0.571561 tig0032904:+16285 Msa1450420:CDS
TCATAATAAACCATATGCAT+GGG 0.572837 tig0032904:+15048 Msa1450420:five_prime_UTR
GAAATCTTATCCATAGGAGA+AGG 0.573086 tig0032904:+15148 Msa1450420:five_prime_UTR
ATCCTACTGATGAGTTTGTG+TGG 0.588183 tig0032904:+15633 Msa1450420:CDS
TTATCCATACAAAATTGGAC+AGG 0.589821 tig0032904:+15293 Msa1450420:CDS
ATGTAAGAAATCTTATCCAT+AGG 0.591103 tig0032904:+15142 Msa1450420:five_prime_UTR
AAGGGTTCTGAATTTCAGCA+TGG 0.591866 tig0032904:+16303 Msa1450420:CDS
AAGAAAGTTGTTATATGATG+GGG 0.592164 tig0032904:+16258 Msa1450420:CDS
GAATCCTGATACTTGCAACT+TGG 0.593694 tig0032904:+15655 Msa1450420:CDS
GGAGCTTGTGGATCACTATG+AGG 0.594812 tig0032904:+15694 Msa1450420:CDS
TCCATACAAAATTGGACAGG+AGG 0.595865 tig0032904:+15296 Msa1450420:CDS
AAGTACTAGCATCTTCAGGT+TGG 0.600680 tig0032904:-16360 Msa1450420:intergenic
TTTCTTACATAATAACTGGA+GGG 0.602486 tig0032904:-15129 Msa1450420:intergenic
CATTGAATGAATACACACTT+CGG 0.613957 tig0032904:+16206 Msa1450420:CDS
ATTTCTTACATAATAACTGG+AGG 0.614631 tig0032904:-15130 Msa1450420:intergenic
GGGTTCTGAATTTCAGCATG+GGG 0.628137 tig0032904:+16305 Msa1450420:CDS
GGCCAACAAGTACTTACATG+AGG 0.640965 tig0032904:-15204 Msa1450420:intergenic
TTCCACACAAACTCATCAGT+AGG 0.644633 tig0032904:-15635 Msa1450420:intergenic
AACCATGTAGGAACAACTTG+TGG 0.645922 tig0032904:-15261 Msa1450420:intergenic
GCCAACAAGTACTTACATGA+GGG 0.655783 tig0032904:-15203 Msa1450420:intergenic
AAACACCACTAAATTAAACA+TGG 0.656730 tig0032904:+15238 Msa1450420:exon
TTGTTGTTGAACATGATCCG+TGG 0.660958 tig0032904:-16331 Msa1450420:intergenic
ATCCAAAAGGAACAAAACCA+AGG 0.667834 tig0032904:+15444 Msa1450420:CDS
TAATTTGGTAGAAACCATGT+AGG 0.670055 tig0032904:-15273 Msa1450420:intergenic
ATTTCAGCATGGGGAAACCA+CGG 0.674315 tig0032904:+16314 Msa1450420:CDS
ATAGATCCTCACATGTCGCG+TGG 0.684738 tig0032904:-15540 Msa1450420:intergenic
TCTGATGTTAAGGAAACAGA+CGG 0.690604 tig0032904:+15374 Msa1450420:CDS
AAAAGATCAAGGCATGACCA+GGG 0.707335 tig0032904:+15490 Msa1450420:CDS
CCAGGGAATATGGAGGACAG+TGG 0.721629 tig0032904:+15507 Msa1450420:CDS
GCTGTGCCACGCGACATGTG+AGG 0.722585 tig0032904:+15534 Msa1450420:CDS
GGCATGACCAGGGAATATGG+AGG 0.766490 tig0032904:+15500 Msa1450420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATTCTAACACTTAA+TGG - tig0032904:16155-16174 Msa1450420:intergenic 15.0%
!! AATATAATTCTAACACTTAA+TGG - tig0032904:16155-16174 Msa1450420:intergenic 15.0%
!! AAGATTTCTTACATAATAAC+TGG - tig0032904:15136-15155 Msa1450420:intergenic 20.0%
!! AAGCAATATACAAGTTAATA+AGG + tig0032904:15180-15199 Msa1450420:five_prime_UTR 20.0%
!! AATCAACAAATTAATCCAAA+AGG + tig0032904:15431-15450 Msa1450420:CDS 20.0%
!! TGTGAATTTGATTATGTTTA+AGG - tig0032904:15726-15745 Msa1450420:intergenic 20.0%
!! GCAAAAAAAATATCAATACA+AGG + tig0032904:15828-15847 Msa1450420:intron 20.0%
!! ATAGTCTATGCTTAAATTTA+AGG + tig0032904:15858-15877 Msa1450420:intron 20.0%
!!! CTAGTTAAAGGTAAATTTTT+TGG + tig0032904:15918-15937 Msa1450420:intron 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG + tig0032904:16178-16197 Msa1450420:intron 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG + tig0032904:16256-16275 Msa1450420:CDS 20.0%
!! TAAGAAAGTTGTTATATGAT+GGG + tig0032904:16257-16276 Msa1450420:CDS 20.0%
!! AAGATTTCTTACATAATAAC+TGG - tig0032904:15136-15155 Msa1450420:intergenic 20.0%
!! AAGCAATATACAAGTTAATA+AGG + tig0032904:15180-15199 Msa1450420:five_prime_UTR 20.0%
!! AATCAACAAATTAATCCAAA+AGG + tig0032904:15431-15450 Msa1450420:CDS 20.0%
!! TGTGAATTTGATTATGTTTA+AGG - tig0032904:15726-15745 Msa1450420:intergenic 20.0%
!! GCAAAAAAAATATCAATACA+AGG + tig0032904:15828-15847 Msa1450420:intron 20.0%
!! ATAGTCTATGCTTAAATTTA+AGG + tig0032904:15858-15877 Msa1450420:intron 20.0%
!!! CTAGTTAAAGGTAAATTTTT+TGG + tig0032904:15918-15937 Msa1450420:intron 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG + tig0032904:16178-16197 Msa1450420:intron 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG + tig0032904:16256-16275 Msa1450420:CDS 20.0%
!! TAAGAAAGTTGTTATATGAT+GGG + tig0032904:16257-16276 Msa1450420:CDS 20.0%
! TCATAATAAACCATATGCAT+GGG + tig0032904:15048-15067 Msa1450420:five_prime_UTR 25.0%
! TTTCTTACATAATAACTGGA+GGG - tig0032904:15132-15151 Msa1450420:intergenic 25.0%
! ATTTCTTACATAATAACTGG+AGG - tig0032904:15133-15152 Msa1450420:intergenic 25.0%
! ATGTAAGAAATCTTATCCAT+AGG + tig0032904:15142-15161 Msa1450420:five_prime_UTR 25.0%
! AAACACCACTAAATTAAACA+TGG + tig0032904:15238-15257 Msa1450420:exon 25.0%
!! CCAATTTTGTATGGATAATT+TGG - tig0032904:15291-15310 Msa1450420:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG + tig0032904:15288-15307 Msa1450420:CDS 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG - tig0032904:15428-15447 Msa1450420:intergenic 25.0%
! TAGTTGTTAATCTAAAAGCT+AGG + tig0032904:16082-16101 Msa1450420:intron 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG - tig0032904:16180-16199 Msa1450420:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG + tig0032904:16177-16196 Msa1450420:intron 25.0%
! AAGAAAGTTGTTATATGATG+GGG + tig0032904:16258-16277 Msa1450420:CDS 25.0%
! TCAAGTATAATATGAATGCA+AGG + tig0032904:16284-16303 Msa1450420:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG + tig0032904:16285-16304 Msa1450420:CDS 25.0%
! TCATAATAAACCATATGCAT+GGG + tig0032904:15048-15067 Msa1450420:five_prime_UTR 25.0%
! TTTCTTACATAATAACTGGA+GGG - tig0032904:15132-15151 Msa1450420:intergenic 25.0%
! ATTTCTTACATAATAACTGG+AGG - tig0032904:15133-15152 Msa1450420:intergenic 25.0%
! ATGTAAGAAATCTTATCCAT+AGG + tig0032904:15142-15161 Msa1450420:five_prime_UTR 25.0%
! AAACACCACTAAATTAAACA+TGG + tig0032904:15238-15257 Msa1450420:exon 25.0%
!! CCAATTTTGTATGGATAATT+TGG - tig0032904:15291-15310 Msa1450420:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG + tig0032904:15288-15307 Msa1450420:CDS 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG - tig0032904:15428-15447 Msa1450420:intergenic 25.0%
! TAGTTGTTAATCTAAAAGCT+AGG + tig0032904:16082-16101 Msa1450420:intron 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG - tig0032904:16180-16199 Msa1450420:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG + tig0032904:16177-16196 Msa1450420:intron 25.0%
! AAGAAAGTTGTTATATGATG+GGG + tig0032904:16258-16277 Msa1450420:CDS 25.0%
! TCAAGTATAATATGAATGCA+AGG + tig0032904:16284-16303 Msa1450420:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG + tig0032904:16285-16304 Msa1450420:CDS 25.0%
CTCATAATAAACCATATGCA+TGG + tig0032904:15047-15066 Msa1450420:five_prime_UTR 30.0%
!!! AGTGGTGTTTTTTGCTTTAA+TGG - tig0032904:15228-15247 Msa1450420:intergenic 30.0%
TAATTTGGTAGAAACCATGT+AGG - tig0032904:15276-15295 Msa1450420:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG + tig0032904:15293-15312 Msa1450420:CDS 30.0%
TGTTGAGCTGATATGAAAAA+TGG - tig0032904:15350-15369 Msa1450420:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG + tig0032904:15364-15383 Msa1450420:CDS 30.0%
ATCAGTAGGATCAAGAATAA+GGG - tig0032904:15624-15643 Msa1450420:intergenic 30.0%
GGATATGTGAATTCAGTATA+TGG - tig0032904:15752-15771 Msa1450420:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG - tig0032904:15773-15792 Msa1450420:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG + tig0032904:15773-15792 Msa1450420:intron 30.0%
TGTCTGAAAGGTAAATAAAG+TGG - tig0032904:15986-16005 Msa1450420:intergenic 30.0%
TTTACCTTTCAGACAAACTT+CGG + tig0032904:15991-16010 Msa1450420:intron 30.0%
TTAATCTAAAAGCTAGGAGA+AGG + tig0032904:16088-16107 Msa1450420:intron 30.0%
CATTGAATGAATACACACTT+CGG + tig0032904:16206-16225 Msa1450420:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG - tig0032904:16407-16426 Msa1450420:intergenic 30.0%
CTCATAATAAACCATATGCA+TGG + tig0032904:15047-15066 Msa1450420:five_prime_UTR 30.0%
!!! AGTGGTGTTTTTTGCTTTAA+TGG - tig0032904:15228-15247 Msa1450420:intergenic 30.0%
TAATTTGGTAGAAACCATGT+AGG - tig0032904:15276-15295 Msa1450420:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG + tig0032904:15293-15312 Msa1450420:CDS 30.0%
TGTTGAGCTGATATGAAAAA+TGG - tig0032904:15350-15369 Msa1450420:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG + tig0032904:15364-15383 Msa1450420:CDS 30.0%
ATCAGTAGGATCAAGAATAA+GGG - tig0032904:15624-15643 Msa1450420:intergenic 30.0%
GGATATGTGAATTCAGTATA+TGG - tig0032904:15752-15771 Msa1450420:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG - tig0032904:15773-15792 Msa1450420:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG + tig0032904:15773-15792 Msa1450420:intron 30.0%
TGTCTGAAAGGTAAATAAAG+TGG - tig0032904:15986-16005 Msa1450420:intergenic 30.0%
TTTACCTTTCAGACAAACTT+CGG + tig0032904:15991-16010 Msa1450420:intron 30.0%
TTAATCTAAAAGCTAGGAGA+AGG + tig0032904:16088-16107 Msa1450420:intron 30.0%
CATTGAATGAATACACACTT+CGG + tig0032904:16206-16225 Msa1450420:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG - tig0032904:16407-16426 Msa1450420:intergenic 30.0%
ACCATATGCATGGGTAAAAT+TGG + tig0032904:15057-15076 Msa1450420:five_prime_UTR 35.0%
! TCCAATTTTACCCATGCATA+TGG - tig0032904:15061-15080 Msa1450420:intergenic 35.0%
GCATGGGTAAAATTGGAAAT+TGG + tig0032904:15064-15083 Msa1450420:five_prime_UTR 35.0%
GAAATCTTATCCATAGGAGA+AGG + tig0032904:15148-15167 Msa1450420:five_prime_UTR 35.0%
! TGTGGCCATGTTTAATTTAG+TGG - tig0032904:15246-15265 Msa1450420:intergenic 35.0%
TCTGATGTTAAGGAAACAGA+CGG + tig0032904:15374-15393 Msa1450420:CDS 35.0%
ATCCAAAAGGAACAAAACCA+AGG + tig0032904:15444-15463 Msa1450420:CDS 35.0%
! TGATCTTTTACAATCACCTG+AGG - tig0032904:15479-15498 Msa1450420:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG + tig0032904:15479-15498 Msa1450420:CDS 35.0%
! TGCTTTTGATCAAACTCAGA+TGG + tig0032904:15589-15608 Msa1450420:CDS 35.0%
CATCAGTAGGATCAAGAATA+AGG - tig0032904:15625-15644 Msa1450420:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG + tig0032904:15673-15692 Msa1450420:CDS 35.0%
! CTACATATTTTGCTAAGCAG+AGG - tig0032904:15799-15818 Msa1450420:intergenic 35.0%
AAAATGATTGAGAGCTCAAG+TGG + tig0032904:15885-15904 Msa1450420:intron 35.0%
!! GGTTGATGAACTCTAGTTAA+AGG + tig0032904:15906-15925 Msa1450420:intron 35.0%
CGAAGTGTGTATTCATTCAA+TGG - tig0032904:16208-16227 Msa1450420:intergenic 35.0%
CCTCAAAAAACATCTGATCT+TGG - tig0032904:16524-16543 Msa1450420:intergenic 35.0%
!!! CCAAGATCAGATGTTTTTTG+AGG + tig0032904:16521-16540 Msa1450420:three_prime_UTR 35.0%
CTTATATTGAGCACTTGCAT+TGG - tig0032904:16557-16576 Msa1450420:intergenic 35.0%
ACCATATGCATGGGTAAAAT+TGG + tig0032904:15057-15076 Msa1450420:five_prime_UTR 35.0%
! TCCAATTTTACCCATGCATA+TGG - tig0032904:15061-15080 Msa1450420:intergenic 35.0%
GCATGGGTAAAATTGGAAAT+TGG + tig0032904:15064-15083 Msa1450420:five_prime_UTR 35.0%
GAAATCTTATCCATAGGAGA+AGG + tig0032904:15148-15167 Msa1450420:five_prime_UTR 35.0%
! TGTGGCCATGTTTAATTTAG+TGG - tig0032904:15246-15265 Msa1450420:intergenic 35.0%
TCTGATGTTAAGGAAACAGA+CGG + tig0032904:15374-15393 Msa1450420:CDS 35.0%
ATCCAAAAGGAACAAAACCA+AGG + tig0032904:15444-15463 Msa1450420:CDS 35.0%
! TGATCTTTTACAATCACCTG+AGG - tig0032904:15479-15498 Msa1450420:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG + tig0032904:15479-15498 Msa1450420:CDS 35.0%
! TGCTTTTGATCAAACTCAGA+TGG + tig0032904:15589-15608 Msa1450420:CDS 35.0%
CATCAGTAGGATCAAGAATA+AGG - tig0032904:15625-15644 Msa1450420:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG + tig0032904:15673-15692 Msa1450420:CDS 35.0%
! CTACATATTTTGCTAAGCAG+AGG - tig0032904:15799-15818 Msa1450420:intergenic 35.0%
AAAATGATTGAGAGCTCAAG+TGG + tig0032904:15885-15904 Msa1450420:intron 35.0%
!! GGTTGATGAACTCTAGTTAA+AGG + tig0032904:15906-15925 Msa1450420:intron 35.0%
CGAAGTGTGTATTCATTCAA+TGG - tig0032904:16208-16227 Msa1450420:intergenic 35.0%
CCTCAAAAAACATCTGATCT+TGG - tig0032904:16524-16543 Msa1450420:intergenic 35.0%
!!! CCAAGATCAGATGTTTTTTG+AGG + tig0032904:16521-16540 Msa1450420:three_prime_UTR 35.0%
CTTATATTGAGCACTTGCAT+TGG - tig0032904:16557-16576 Msa1450420:intergenic 35.0%
TGTGGTCACAGAAGAAATAC+AGG - tig0032904:15102-15121 Msa1450420:intergenic 40.0%
TAACTGGAGGGAAATGTTTG+TGG - tig0032904:15120-15139 Msa1450420:intergenic 40.0%
GCCAACAAGTACTTACATGA+GGG - tig0032904:15206-15225 Msa1450420:intergenic 40.0%
AACCATGTAGGAACAACTTG+TGG - tig0032904:15264-15283 Msa1450420:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG + tig0032904:15296-15315 Msa1450420:CDS 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG - tig0032904:15300-15319 Msa1450420:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG + tig0032904:15489-15508 Msa1450420:CDS 40.0%
AAAAGATCAAGGCATGACCA+GGG + tig0032904:15490-15509 Msa1450420:CDS 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG - tig0032904:15581-15600 Msa1450420:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG - tig0032904:15588-15607 Msa1450420:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG + tig0032904:15633-15652 Msa1450420:CDS 40.0%
TTCCACACAAACTCATCAGT+AGG - tig0032904:15638-15657 Msa1450420:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG + tig0032904:15655-15674 Msa1450420:CDS 40.0%
TAGACCAAGTTGCAAGTATC+AGG - tig0032904:15662-15681 Msa1450420:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG + tig0032904:15682-15701 Msa1450420:CDS 40.0%
GACTAAGAATTGTTCTCGTC+AGG - tig0032904:15960-15979 Msa1450420:intergenic 40.0%
CAATCCGAAGTTTGTCTGAA+AGG - tig0032904:15998-16017 Msa1450420:intergenic 40.0%
AGACAAACTTCGGATTGTCA+AGG + tig0032904:16001-16020 Msa1450420:intron 40.0%
GAATACACACTTCGGTTGAT+TGG + tig0032904:16214-16233 Msa1450420:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG + tig0032904:16303-16322 Msa1450420:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG + tig0032904:16304-16323 Msa1450420:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG - tig0032904:16334-16353 Msa1450420:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG - tig0032904:16363-16382 Msa1450420:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG - tig0032904:16367-16386 Msa1450420:intergenic 40.0%
TGCAAGTGCTCAATATAAGC+AGG + tig0032904:16558-16577 Msa1450420:three_prime_UTR 40.0%
TGTGGTCACAGAAGAAATAC+AGG - tig0032904:15102-15121 Msa1450420:intergenic 40.0%
TAACTGGAGGGAAATGTTTG+TGG - tig0032904:15120-15139 Msa1450420:intergenic 40.0%
GCCAACAAGTACTTACATGA+GGG - tig0032904:15206-15225 Msa1450420:intergenic 40.0%
AACCATGTAGGAACAACTTG+TGG - tig0032904:15264-15283 Msa1450420:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG + tig0032904:15296-15315 Msa1450420:CDS 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG - tig0032904:15300-15319 Msa1450420:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG + tig0032904:15489-15508 Msa1450420:CDS 40.0%
AAAAGATCAAGGCATGACCA+GGG + tig0032904:15490-15509 Msa1450420:CDS 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG - tig0032904:15581-15600 Msa1450420:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG - tig0032904:15588-15607 Msa1450420:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG + tig0032904:15633-15652 Msa1450420:CDS 40.0%
TTCCACACAAACTCATCAGT+AGG - tig0032904:15638-15657 Msa1450420:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG + tig0032904:15655-15674 Msa1450420:CDS 40.0%
TAGACCAAGTTGCAAGTATC+AGG - tig0032904:15662-15681 Msa1450420:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG + tig0032904:15682-15701 Msa1450420:CDS 40.0%
GACTAAGAATTGTTCTCGTC+AGG - tig0032904:15960-15979 Msa1450420:intergenic 40.0%
CAATCCGAAGTTTGTCTGAA+AGG - tig0032904:15998-16017 Msa1450420:intergenic 40.0%
AGACAAACTTCGGATTGTCA+AGG + tig0032904:16001-16020 Msa1450420:intron 40.0%
GAATACACACTTCGGTTGAT+TGG + tig0032904:16214-16233 Msa1450420:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG + tig0032904:16303-16322 Msa1450420:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG + tig0032904:16304-16323 Msa1450420:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG - tig0032904:16334-16353 Msa1450420:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG - tig0032904:16363-16382 Msa1450420:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG - tig0032904:16367-16386 Msa1450420:intergenic 40.0%
TGCAAGTGCTCAATATAAGC+AGG + tig0032904:16558-16577 Msa1450420:three_prime_UTR 40.0%
TAGCTTCACTCCTTCTCCTA+TGG - tig0032904:15161-15180 Msa1450420:intergenic 45.0%
GCCCTCATGTAAGTACTTGT+TGG + tig0032904:15202-15221 Msa1450420:five_prime_UTR 45.0%
GGCCAACAAGTACTTACATG+AGG - tig0032904:15207-15226 Msa1450420:intergenic 45.0%
GAAACAGACGGTGTGAAAGT+AGG + tig0032904:15386-15405 Msa1450420:CDS 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG - tig0032904:15449-15468 Msa1450420:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG - tig0032904:15470-15489 Msa1450420:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG + tig0032904:16305-16324 Msa1450420:CDS 45.0%
ATTTCAGCATGGGGAAACCA+CGG + tig0032904:16314-16333 Msa1450420:CDS 45.0%
TAGCTTCACTCCTTCTCCTA+TGG - tig0032904:15161-15180 Msa1450420:intergenic 45.0%
GCCCTCATGTAAGTACTTGT+TGG + tig0032904:15202-15221 Msa1450420:five_prime_UTR 45.0%
GGCCAACAAGTACTTACATG+AGG - tig0032904:15207-15226 Msa1450420:intergenic 45.0%
GAAACAGACGGTGTGAAAGT+AGG + tig0032904:15386-15405 Msa1450420:CDS 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG - tig0032904:15449-15468 Msa1450420:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG - tig0032904:15470-15489 Msa1450420:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG + tig0032904:16305-16324 Msa1450420:CDS 45.0%
ATTTCAGCATGGGGAAACCA+CGG + tig0032904:16314-16333 Msa1450420:CDS 45.0%
GGCCACAAGTTGTTCCTACA+TGG + tig0032904:15259-15278 Msa1450420:CDS 50.0%
CAAGGCATGACCAGGGAATA+TGG + tig0032904:15497-15516 Msa1450420:CDS 50.0%
ATAGATCCTCACATGTCGCG+TGG - tig0032904:15543-15562 Msa1450420:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG + tig0032904:15694-15713 Msa1450420:CDS 50.0%
AGGCTTCGTTACCCTGAAAG+CGG + tig0032904:16021-16040 Msa1450420:intron 50.0%
!! ACCCTGAAAGCGGATTGTCA+AGG + tig0032904:16031-16050 Msa1450420:intron 50.0%
GCCTTGACAATCCGCTTTCA+GGG - tig0032904:16035-16054 Msa1450420:intergenic 50.0%
AGCCTTGACAATCCGCTTTC+AGG - tig0032904:16036-16055 Msa1450420:intergenic 50.0%
GGCCACAAGTTGTTCCTACA+TGG + tig0032904:15259-15278 Msa1450420:CDS 50.0%
CAAGGCATGACCAGGGAATA+TGG + tig0032904:15497-15516 Msa1450420:CDS 50.0%
ATAGATCCTCACATGTCGCG+TGG - tig0032904:15543-15562 Msa1450420:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG + tig0032904:15694-15713 Msa1450420:CDS 50.0%
AGGCTTCGTTACCCTGAAAG+CGG + tig0032904:16021-16040 Msa1450420:intron 50.0%
!! ACCCTGAAAGCGGATTGTCA+AGG + tig0032904:16031-16050 Msa1450420:intron 50.0%
GCCTTGACAATCCGCTTTCA+GGG - tig0032904:16035-16054 Msa1450420:intergenic 50.0%
AGCCTTGACAATCCGCTTTC+AGG - tig0032904:16036-16055 Msa1450420:intergenic 50.0%
ACCAAGGCCAGTTGAACCTC+AGG + tig0032904:15460-15479 Msa1450420:CDS 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG - tig0032904:15464-15483 Msa1450420:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG + tig0032904:15500-15519 Msa1450420:CDS 55.0%
CCACTGTCCTCCATATTCCC+TGG - tig0032904:15510-15529 Msa1450420:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG + tig0032904:15507-15526 Msa1450420:CDS 55.0%
ACCAAGGCCAGTTGAACCTC+AGG + tig0032904:15460-15479 Msa1450420:CDS 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG - tig0032904:15464-15483 Msa1450420:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG + tig0032904:15500-15519 Msa1450420:CDS 55.0%
CCACTGTCCTCCATATTCCC+TGG - tig0032904:15510-15529 Msa1450420:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG + tig0032904:15507-15526 Msa1450420:CDS 55.0%
GCTGTGCCACGCGACATGTG+AGG + tig0032904:15534-15553 Msa1450420:CDS 65.0%
GCTGTGCCACGCGACATGTG+AGG + tig0032904:15534-15553 Msa1450420:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0032904 gene 15022 16616 15022 ID=Msa1450420;Name=Msa1450420
tig0032904 mRNA 15022 16616 15022 ID=Msa1450420-mRNA-1;Parent=Msa1450420;Name=Msa1450420-mRNA-1;_AED=0.39;_eAED=0.39;_QI=235|1|1|1|1|1|2|232|214
tig0032904 exon 15022 15715 15022 ID=Msa1450420-mRNA-1:exon:17472;Parent=Msa1450420-mRNA-1
tig0032904 exon 16199 16616 16199 ID=Msa1450420-mRNA-1:exon:17473;Parent=Msa1450420-mRNA-1
tig0032904 five_prime_UTR 15022 15256 15022 ID=Msa1450420-mRNA-1:five_prime_utr;Parent=Msa1450420-mRNA-1
tig0032904 CDS 15257 15715 15257 ID=Msa1450420-mRNA-1:cds;Parent=Msa1450420-mRNA-1
tig0032904 CDS 16199 16384 16199 ID=Msa1450420-mRNA-1:cds;Parent=Msa1450420-mRNA-1
tig0032904 three_prime_UTR 16385 16616 16385 ID=Msa1450420-mRNA-1:three_prime_utr;Parent=Msa1450420-mRNA-1
Gene Sequence

>Msa1450420

ATGGCCACAAGTTGTTCCTACATGGTTTCTACCAAATTATCCATACAAAATTGGACAGGAGGAAGAAGAAAAGAAGTAAGAAACAGAACTCCATTTTTCATATCAGCTCAACAACAATCTGATGTTAAGGAAACAGACGGTGTGAAAGTAGGAGAAGAGAAAGAAATACCACAAAATCAACAAATTAATCCAAAAGGAACAAAACCAAGGCCAGTTGAACCTCAGGTGATTGTAAAAGATCAAGGCATGACCAGGGAATATGGAGGACAGTGGTTGAGCTGTGCCACGCGACATGTGAGGATCTATGCAGCTTATATTGATCCAGAAACCAGTGCTTTTGATCAAACTCAGATGGATAAACTCACCCTTATTCTTGATCCTACTGATGAGTTTGTGTGGAATCCTGATACTTGCAACTTGGTCTATTCTTACTTTCAGGAGCTTGTGGATCACTATGAGGGTGCTCCATTGAATGAATACACACTTCGGTTGATTGGTTCAGACATAGAGCATTATATAAGAAAGTTGTTATATGATGGGGTAATCAAGTATAATATGAATGCAAGGGTTCTGAATTTCAGCATGGGGAAACCACGGATCATGTTCAACAACAATGATATCCAACCTGAAGATGCTAGTACTTGA

Protein sequence

>Msa1450420

MATSCSYMVSTKLSIQNWTGGRRKEVRNRTPFFISAQQQSDVKETDGVKVGEEKEIPQNQQINPKGTKPRPVEPQVIVKDQGMTREYGGQWLSCATRHVRIYAAYIDPETSAFDQTQMDKLTLILDPTDEFVWNPDTCNLVYSYFQELVDHYEGAPLNEYTLRLIGSDIEHYIRKLLYDGVIKYNMNARVLNFSMGKPRIMFNNNDIQPEDAST*