AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093390 MtrunA17_Chr7g0226681 97.786 271 6 0 1 271 14 284 0.0 548
Msa1093390 MtrunA17_Chr6g0488521 40.206 194 112 1 40 229 95 288 1.21e-44 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093390 AT3G01660.1 64.368 261 88 3 11 270 17 273 3.37e-122 350
Msa1093390 AT4G29590.1 38.462 208 124 1 27 230 91 298 3.14e-43 149

Find 101 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATACATGATGATTAAAT+TGG 0.124999 7_3:+13239471 Msa1093390:exon
ATTTAATGTGCTAACTATTT+TGG 0.126265 7_3:-13238145 None:intergenic
ATAAGCAATAACTGCATAAA+AGG 0.169260 7_3:-13239436 None:intergenic
TTGTATACTATATGCATTAT+TGG 0.206333 7_3:-13237987 None:intergenic
CCCTTCTCTCCATGCACTTA+TGG 0.211437 7_3:-13239253 None:intergenic
TGTAGCTGAAATGAAATTAA+AGG 0.219999 7_3:-13237915 None:intergenic
TGTATACTATATGCATTATT+GGG 0.229098 7_3:-13237986 None:intergenic
TTTATGCAGTTATTGCTTAT+AGG 0.245402 7_3:+13239439 Msa1093390:CDS
TTCTTGATCTCATGAGTTCT+TGG 0.266453 7_3:+13238370 Msa1093390:CDS
TGGAGTTTGGAGTAGCTATT+TGG 0.284572 7_3:-13238070 None:intergenic
AGGTATTTGCAGAGGTGTTT+AGG 0.295860 7_3:+13239169 Msa1093390:intron
AGCACGGTCATGAAGCTCTT+TGG 0.299546 7_3:+13239393 Msa1093390:CDS
ATCTTGGATAAGGTTCAATT+TGG 0.302425 7_3:-13238244 None:intergenic
ATGAAATTAAAGGCATCTTT+TGG 0.317779 7_3:-13237905 None:intergenic
GTTGGATTACTTTGTCATAA+AGG 0.320022 7_3:+13238476 Msa1093390:CDS
GATAAATCTATTGATGGTTT+CGG 0.331434 7_3:+13240274 Msa1093390:three_prime_UTR
ATGCATAAAACTCTTTATCT+TGG 0.343449 7_3:-13238260 None:intergenic
TGGTTTGCATTGTTGGAGTT+TGG 0.344806 7_3:-13238083 None:intergenic
AAGAAGATTGTTGATTGGTT+TGG 0.346241 7_3:-13238176 None:intergenic
TGTAGATTGGTTTGCATTGT+TGG 0.347566 7_3:-13238090 None:intergenic
AAAACTCTTTATCTTGGATA+AGG 0.357532 7_3:-13238254 None:intergenic
GAGAAGGGACTACTTATAGT+AGG 0.371810 7_3:+13239268 Msa1093390:CDS
CTGTGAAACCTTCCACTGAT+TGG 0.374068 7_3:-13239314 None:intergenic
CCAATTTAATCATCATGTAT+TGG 0.377264 7_3:-13239471 None:intergenic
CCCTCTGGCTCCCGGAGAAA+AGG 0.384023 7_3:+13239721 Msa1093390:three_prime_UTR
ATGAAAAGTGGTAATAGAAA+TGG 0.385605 7_3:+13239576 Msa1093390:three_prime_UTR
ATCTAACCTTCTCTGGTTGT+TGG 0.398077 7_3:-13238578 None:intergenic
AAGCCAAAAGTCTTGCTTGT+AGG 0.399979 7_3:-13240370 Msa1093400:CDS
TCACAGAGGCAGAGGTGGTT+AGG 0.405174 7_3:+13239331 Msa1093390:CDS
GGAGTAAGGCTTAGTTTCAT+TGG 0.405458 7_3:-13240349 Msa1093400:exon
TAACAAATCTTTACAGAGAA+AGG 0.406271 7_3:+13238328 Msa1093390:CDS
GGAATATATCTAACCTTCTC+TGG 0.413293 7_3:-13238585 None:intergenic
TCTTGATCTCATGAGTTCTT+GGG 0.417962 7_3:+13238371 Msa1093390:CDS
ACTCCTACAAGCAAGACTTT+TGG 0.420674 7_3:+13240367 Msa1093390:three_prime_UTR
GGAGTTTGGAGTAGCTATTT+GGG 0.425650 7_3:-13238069 None:intergenic
ATTGGCAGTCATTAAATGCC+TGG 0.426852 7_3:-13240331 Msa1093400:three_prime_UTR
TACAGAAGAAGATTGTTGAT+TGG 0.433862 7_3:-13238181 None:intergenic
AATCTGCAACACTTTCAGTT+AGG 0.437506 7_3:+13240244 Msa1093390:three_prime_UTR
AAGTCTTGCTTGTAGGAGTA+AGG 0.439077 7_3:-13240363 Msa1093400:CDS
ATCTATTGATGGTTTCGGAT+TGG 0.440989 7_3:+13240279 Msa1093390:three_prime_UTR
CAATACATGATGATTAAATT+GGG 0.445819 7_3:+13239472 Msa1093390:exon
AGATGAGATAAATCTATTGA+TGG 0.451747 7_3:+13240268 Msa1093390:three_prime_UTR
GGTGTTATCCCTCTGGCTCC+CGG 0.456165 7_3:+13239713 Msa1093390:three_prime_UTR
GGCTCTGGTAATTCGAAGTT+CGG 0.457484 7_3:+13239743 Msa1093390:three_prime_UTR
TTTGATATGAGGTGTGTAGA+TGG 0.457617 7_3:-13238115 None:intergenic
GTAAAATACAAAAGAGTGGT+AGG 0.461440 7_3:+13238414 Msa1093390:CDS
TGTGTAGATGGCATGTAGAT+TGG 0.465248 7_3:-13238103 None:intergenic
AAGAACTTGCAAAGAATTCA+AGG 0.466708 7_3:+13238454 Msa1093390:CDS
GTGGTAGGGCATGGGATGAA+TGG 0.478315 7_3:+13238429 Msa1093390:CDS
CCTCTGGCTCCCGGAGAAAA+GGG 0.491396 7_3:+13239722 Msa1093390:three_prime_UTR
TAAGCAATAACTGCATAAAA+GGG 0.492787 7_3:-13239435 None:intergenic
ACTTGCAAAGAATTCAAGGT+TGG 0.493288 7_3:+13238458 Msa1093390:CDS
CTCACTATGAACACCCCTCC+TGG 0.504729 7_3:-13239201 None:intergenic
TACAAAAGAGTGGTAGGGCA+TGG 0.506435 7_3:+13238420 Msa1093390:CDS
AGATCAAGAATCTCCATGTC+AGG 0.511558 7_3:-13238357 None:intergenic
GGAAGGTTTCACAGAGGCAG+AGG 0.513710 7_3:+13239323 Msa1093390:CDS
TGTATTAACAATATGAAAAG+TGG 0.515340 7_3:+13239564 Msa1093390:three_prime_UTR
GCCATAAGTGCATGGAGAGA+AGG 0.518478 7_3:+13239252 Msa1093390:CDS
ATATGATGCTGATCTTCTGC+AGG 0.527558 7_3:-13240441 Msa1093400:intron
GTAGCTATTTGGGTGAAAAG+TGG 0.533984 7_3:-13238059 None:intergenic
GTATACTATATGCATTATTG+GGG 0.539624 7_3:-13237985 None:intergenic
TAGTGGTGACTTGTCATCAA+TGG 0.540340 7_3:-13239367 None:intergenic
CCATAAGTGCATGGAGAGAA+GGG 0.541068 7_3:+13239253 Msa1093390:CDS
TTATAGTAGGGTGCGACTTG+TGG 0.542539 7_3:+13239281 Msa1093390:CDS
GACTTGTCATCAATGGTAGT+TGG 0.545370 7_3:-13239360 None:intergenic
CAGTACTTCCAATCAGTGGA+AGG 0.551004 7_3:+13239306 Msa1093390:CDS
GCTCCCGGAGAAAAGGGCTC+TGG 0.551154 7_3:+13239728 Msa1093390:three_prime_UTR
TGTGTGACTCAATTATAGTC+TGG 0.552138 7_3:+13239647 Msa1093390:three_prime_UTR
CTTGTGACTCATGTTGATGA+TGG 0.555804 7_3:+13238291 Msa1093390:CDS
AATCAACAATCTTCTTCTGT+AGG 0.559248 7_3:+13238183 Msa1093390:CDS
ACAAAAGAGTGGTAGGGCAT+GGG 0.567245 7_3:+13238421 Msa1093390:CDS
GTGTTTAGGTTGCTAAAACC+AGG 0.582281 7_3:+13239183 Msa1093390:CDS
TTCATGACCGTGCTCAGTAG+TGG 0.584220 7_3:-13239384 None:intergenic
TTGTTCTTACACAAGAAGGA+AGG 0.589924 7_3:+13238220 Msa1093390:CDS
TAAAATACAAAAGAGTGGTA+GGG 0.591010 7_3:+13238415 Msa1093390:CDS
CTAGCTTTCACAACATGTAG+AGG 0.595195 7_3:+13240208 Msa1093390:three_prime_UTR
AGAAGGGACTACTTATAGTA+GGG 0.601293 7_3:+13239269 Msa1093390:CDS
ATGAGAAAGCCATAAGTGCA+TGG 0.601564 7_3:+13239244 Msa1093390:CDS
AGGTTTCACAGAGGCAGAGG+TGG 0.604009 7_3:+13239326 Msa1093390:CDS
TGCAGGATAATGCTACACTC+TGG 0.605445 7_3:-13240424 Msa1093400:intron
TCAACATGAGTCACAAGGCG+TGG 0.605771 7_3:-13238285 None:intergenic
ATTTCATCCTCAAGAGTGTG+TGG 0.614162 7_3:-13239526 None:intergenic
GGTTCAGTACTTCCAATCAG+TGG 0.616659 7_3:+13239302 Msa1093390:CDS
AGTCACTCCACACACTCTTG+AGG 0.620879 7_3:+13239519 Msa1093390:three_prime_UTR
GTATCTCCAACAACCAGAGA+AGG 0.623557 7_3:+13238572 Msa1093390:CDS
TCTGATATCACAATATGCAT+CGG 0.625257 7_3:+13240180 Msa1093390:three_prime_UTR
TAATTCACAGGTATTTGCAG+AGG 0.627593 7_3:+13239161 Msa1093390:intron
AGAAAGGTTGAGACCTGACA+TGG 0.635102 7_3:+13238344 Msa1093390:CDS
GATGCATATTGTGATATCAG+AGG 0.635435 7_3:-13240178 Msa1093400:three_prime_UTR
TAGGTTGCTAAAACCAGGAG+GGG 0.635714 7_3:+13239188 Msa1093390:CDS
CATCATCAACATGAGTCACA+AGG 0.647019 7_3:-13238290 None:intergenic
TGATGTAAAATACAAAAGAG+TGG 0.649830 7_3:+13238410 Msa1093390:CDS
TATACTATATGCATTATTGG+GGG 0.655942 7_3:-13237984 None:intergenic
CAAGTCACCACTACTGAGCA+CGG 0.656964 7_3:+13239377 Msa1093390:CDS
CGAAATTTACAGTTCCGTAG+CGG 0.670919 7_3:+13240098 Msa1093390:intron
TAATTCGAAGTTCGGCCATG+AGG 0.671389 7_3:+13239751 Msa1093390:three_prime_UTR
TTTAGGTTGCTAAAACCAGG+AGG 0.688060 7_3:+13239186 Msa1093390:CDS
TTAGGTTGCTAAAACCAGGA+GGG 0.690482 7_3:+13239187 Msa1093390:CDS
ATGGTTGTGAGAGCATAGAG+AGG 0.692484 7_3:-13237950 None:intergenic
ATCAGTGGAAGGTTTCACAG+AGG 0.782577 7_3:+13239317 Msa1093390:CDS
AAGTATCTACTTGATCGACG+AGG 0.791825 7_3:-13240141 Msa1093400:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTCTTTTTTTTTTTTTTT+GGG + chr7_3:13239692-13239711 Msa1093390:three_prime_UTR 10.0%
!!! TTATAATTTTGATACATTCA+AGG - chr7_3:13238771-13238790 None:intergenic 15.0%
!!! GTTCTCTTTTTTTTTTTTTT+TGG + chr7_3:13239691-13239710 Msa1093390:three_prime_UTR 15.0%
!! ATTTAAGGATACAAAAAATT+AGG - chr7_3:13239838-13239857 Msa1093400:three_prime_UTR 15.0%
!! TGTATACTATATGCATTATT+GGG - chr7_3:13237989-13238008 None:intergenic 20.0%
!! TTGTATACTATATGCATTAT+TGG - chr7_3:13237990-13238009 None:intergenic 20.0%
!!! ATTTAATGTGCTAACTATTT+TGG - chr7_3:13238148-13238167 None:intergenic 20.0%
!!! CTTTTGTATTTTACATCATT+TGG - chr7_3:13238408-13238427 None:intergenic 20.0%
!! AATAAACTCATAAATTCTTG+TGG - chr7_3:13239124-13239143 None:intergenic 20.0%
!! TACTAATAAAGATAATTCAC+AGG + chr7_3:13239149-13239168 Msa1093390:intron 20.0%
!! CAATACATGATGATTAAATT+GGG + chr7_3:13239472-13239491 Msa1093390:exon 20.0%
!! TGTATTAACAATATGAAAAG+TGG + chr7_3:13239564-13239583 Msa1093390:three_prime_UTR 20.0%
!!! AATGTTGTGTTTAAGATTTA+AGG - chr7_3:13239853-13239872 Msa1093400:three_prime_UTR 20.0%
!! AATCTTAATCCTACAATTTA+AGG + chr7_3:13240055-13240074 Msa1093390:intron 20.0%
!!! ATGAAATTAAAGGCATCTTT+TGG - chr7_3:13237908-13237927 None:intergenic 25.0%
! TGTAGCTGAAATGAAATTAA+AGG - chr7_3:13237918-13237937 None:intergenic 25.0%
! TATACTATATGCATTATTGG+GGG - chr7_3:13237987-13238006 None:intergenic 25.0%
! GTATACTATATGCATTATTG+GGG - chr7_3:13237988-13238007 None:intergenic 25.0%
! AAAACTCTTTATCTTGGATA+AGG - chr7_3:13238257-13238276 None:intergenic 25.0%
! ATGCATAAAACTCTTTATCT+TGG - chr7_3:13238263-13238282 None:intergenic 25.0%
! TAACAAATCTTTACAGAGAA+AGG + chr7_3:13238328-13238347 Msa1093390:CDS 25.0%
! TGATGTAAAATACAAAAGAG+TGG + chr7_3:13238410-13238429 Msa1093390:CDS 25.0%
! TAAAATACAAAAGAGTGGTA+GGG + chr7_3:13238415-13238434 Msa1093390:CDS 25.0%
!! TCGAAATTTCTCTATAGTTT+TGG - chr7_3:13238686-13238705 None:intergenic 25.0%
!!! TTGTTTTTCATAAGTCAGTT+TGG + chr7_3:13238820-13238839 Msa1093390:intron 25.0%
! TAAGCAATAACTGCATAAAA+GGG - chr7_3:13239438-13239457 None:intergenic 25.0%
! ATAAGCAATAACTGCATAAA+AGG - chr7_3:13239439-13239458 None:intergenic 25.0%
! TTTATGCAGTTATTGCTTAT+AGG + chr7_3:13239439-13239458 Msa1093390:CDS 25.0%
! CCAATTTAATCATCATGTAT+TGG - chr7_3:13239474-13239493 None:intergenic 25.0%
! CCAATACATGATGATTAAAT+TGG + chr7_3:13239471-13239490 Msa1093390:exon 25.0%
! ATGAAAAGTGGTAATAGAAA+TGG + chr7_3:13239576-13239595 Msa1093390:three_prime_UTR 25.0%
! AAAAAAAAGAGAACATGCTA+TGG - chr7_3:13239685-13239704 None:intergenic 25.0%
! GAACTAGATAAATTTACACA+AGG + chr7_3:13239798-13239817 Msa1093390:intron 25.0%
!!! TCAAACTCGAGTTATTTTTT+TGG - chr7_3:13240002-13240021 Msa1093400:three_prime_UTR 25.0%
! AGATGAGATAAATCTATTGA+TGG + chr7_3:13240268-13240287 Msa1093390:three_prime_UTR 25.0%
!! GATAAATCTATTGATGGTTT+CGG + chr7_3:13240274-13240293 Msa1093390:three_prime_UTR 25.0%
!!! AATGTGCTAACTATTTTGGT+TGG - chr7_3:13238144-13238163 None:intergenic 30.0%
! AAGAAGATTGTTGATTGGTT+TGG - chr7_3:13238179-13238198 None:intergenic 30.0%
TACAGAAGAAGATTGTTGAT+TGG - chr7_3:13238184-13238203 None:intergenic 30.0%
AATCAACAATCTTCTTCTGT+AGG + chr7_3:13238183-13238202 Msa1093390:CDS 30.0%
ATCTTGGATAAGGTTCAATT+TGG - chr7_3:13238247-13238266 None:intergenic 30.0%
GTAAAATACAAAAGAGTGGT+AGG + chr7_3:13238414-13238433 Msa1093390:CDS 30.0%
AAGAACTTGCAAAGAATTCA+AGG + chr7_3:13238454-13238473 Msa1093390:CDS 30.0%
GTTGGATTACTTTGTCATAA+AGG + chr7_3:13238476-13238495 Msa1093390:CDS 30.0%
TGGAAGATTATATGATGTCA+TGG - chr7_3:13238609-13238628 None:intergenic 30.0%
GATTGACAATAGATAAGGTT+TGG - chr7_3:13238629-13238648 None:intergenic 30.0%
GTTGAGATTGACAATAGATA+AGG - chr7_3:13238634-13238653 None:intergenic 30.0%
!!! TCTCAACGTTACTTTTTCTT+AGG + chr7_3:13238647-13238666 Msa1093390:intron 30.0%
!!! CGTTACTTTTTCTTAGGTTT+TGG + chr7_3:13238653-13238672 Msa1093390:intron 30.0%
!! ACTTTTTCTTAGGTTTTGGT+AGG + chr7_3:13238657-13238676 Msa1093390:intron 30.0%
AATTTCGAACAGTTAATCGA+AGG + chr7_3:13238698-13238717 Msa1093390:intron 30.0%
TAATCGAAGGAGTAAATAGT+CGG + chr7_3:13238711-13238730 Msa1093390:intron 30.0%
GAAGAGAATGAGAAAAATGA+AGG - chr7_3:13239618-13239637 None:intergenic 30.0%
ACAAAACTATACTTACCTCA+TGG - chr7_3:13239769-13239788 None:intergenic 30.0%
AGTGTATTGCCTTAAATTGT+AGG - chr7_3:13240067-13240086 Msa1093400:three_prime_UTR 30.0%
TCTGATATCACAATATGCAT+CGG + chr7_3:13240180-13240199 Msa1093390:three_prime_UTR 30.0%
!! TGTAGATTGGTTTGCATTGT+TGG - chr7_3:13238093-13238112 None:intergenic 35.0%
TTTGATATGAGGTGTGTAGA+TGG - chr7_3:13238118-13238137 None:intergenic 35.0%
!! TTGGTTGGAGTTTTGATATG+AGG - chr7_3:13238129-13238148 None:intergenic 35.0%
!! CGTTTTGTTCTTACACAAGA+AGG + chr7_3:13238216-13238235 Msa1093390:CDS 35.0%
TTGTTCTTACACAAGAAGGA+AGG + chr7_3:13238220-13238239 Msa1093390:CDS 35.0%
TTCTTGATCTCATGAGTTCT+TGG + chr7_3:13238370-13238389 Msa1093390:CDS 35.0%
TCTTGATCTCATGAGTTCTT+GGG + chr7_3:13238371-13238390 Msa1093390:CDS 35.0%
ACTTGCAAAGAATTCAAGGT+TGG + chr7_3:13238458-13238477 Msa1093390:CDS 35.0%
GGAATATATCTAACCTTCTC+TGG - chr7_3:13238588-13238607 None:intergenic 35.0%
! TATCCCAGAGTCTTTCTTTT+TGG + chr7_3:13238794-13238813 Msa1093390:intron 35.0%
ACTAACAGAAGACATGTTTG+TGG - chr7_3:13238847-13238866 None:intergenic 35.0%
! GTCTTTTGCTAGCAATATCA+TGG - chr7_3:13238879-13238898 None:intergenic 35.0%
TAATTCACAGGTATTTGCAG+AGG + chr7_3:13239161-13239180 Msa1093390:intron 35.0%
AGAAGGGACTACTTATAGTA+GGG + chr7_3:13239269-13239288 Msa1093390:CDS 35.0%
TGTGTGACTCAATTATAGTC+TGG + chr7_3:13239647-13239666 Msa1093390:three_prime_UTR 35.0%
GATGCATATTGTGATATCAG+AGG - chr7_3:13240181-13240200 Msa1093400:three_prime_UTR 35.0%
AATCTGCAACACTTTCAGTT+AGG + chr7_3:13240244-13240263 Msa1093390:three_prime_UTR 35.0%
! ATCTATTGATGGTTTCGGAT+TGG + chr7_3:13240279-13240298 Msa1093390:three_prime_UTR 35.0%
ATTGGGGGATAAGCAATCAA+TGG - chr7_3:13237972-13237991 None:intergenic 40.0%
GTAGCTATTTGGGTGAAAAG+TGG - chr7_3:13238062-13238081 None:intergenic 40.0%
! GGAGTTTGGAGTAGCTATTT+GGG - chr7_3:13238072-13238091 None:intergenic 40.0%
! TGGAGTTTGGAGTAGCTATT+TGG - chr7_3:13238073-13238092 None:intergenic 40.0%
! TGGTTTGCATTGTTGGAGTT+TGG - chr7_3:13238086-13238105 None:intergenic 40.0%
TGTGTAGATGGCATGTAGAT+TGG - chr7_3:13238106-13238125 None:intergenic 40.0%
CATCATCAACATGAGTCACA+AGG - chr7_3:13238293-13238312 None:intergenic 40.0%
! CTTGTGACTCATGTTGATGA+TGG + chr7_3:13238291-13238310 Msa1093390:CDS 40.0%
AGATCAAGAATCTCCATGTC+AGG - chr7_3:13238360-13238379 None:intergenic 40.0%
ATCTAACCTTCTCTGGTTGT+TGG - chr7_3:13238581-13238600 None:intergenic 40.0%
AAGGAGTAAATAGTCGGTCT+TGG + chr7_3:13238717-13238736 Msa1093390:intron 40.0%
ACGCCAAAAAGAAAGACTCT+GGG - chr7_3:13238800-13238819 None:intergenic 40.0%
AACGCCAAAAAGAAAGACTC+TGG - chr7_3:13238801-13238820 None:intergenic 40.0%
CTGATCAAATGTGTCTCATG+TGG + chr7_3:13238988-13239007 Msa1093390:intron 40.0%
TATTTGCGACAACACAACTG+TGG - chr7_3:13239020-13239039 None:intergenic 40.0%
ATGAAATAACTGTGATGCCG+CGG + chr7_3:13239041-13239060 Msa1093390:intron 40.0%
!! AGGTATTTGCAGAGGTGTTT+AGG + chr7_3:13239169-13239188 Msa1093390:intron 40.0%
!! GTGTTTAGGTTGCTAAAACC+AGG + chr7_3:13239183-13239202 Msa1093390:CDS 40.0%
!! TTTAGGTTGCTAAAACCAGG+AGG + chr7_3:13239186-13239205 Msa1093390:CDS 40.0%
! TTAGGTTGCTAAAACCAGGA+GGG + chr7_3:13239187-13239206 Msa1093390:CDS 40.0%
ATGAGAAAGCCATAAGTGCA+TGG + chr7_3:13239244-13239263 Msa1093390:CDS 40.0%
GAGAAGGGACTACTTATAGT+AGG + chr7_3:13239268-13239287 Msa1093390:CDS 40.0%
GACTTGTCATCAATGGTAGT+TGG - chr7_3:13239363-13239382 None:intergenic 40.0%
! TAGTGGTGACTTGTCATCAA+TGG - chr7_3:13239370-13239389 None:intergenic 40.0%
! ATTTCATCCTCAAGAGTGTG+TGG - chr7_3:13239529-13239548 None:intergenic 40.0%
!!! TTTTTTGGGTGTTATCCCTC+TGG + chr7_3:13239706-13239725 Msa1093390:three_prime_UTR 40.0%
! CCAACTGTGGTTGATTCATT+TGG - chr7_3:13239900-13239919 Msa1093400:three_prime_UTR 40.0%
CCAAATGAATCAACCACAGT+TGG + chr7_3:13239897-13239916 Msa1093390:intron 40.0%
AATGAATCAACCACAGTTGG+AGG + chr7_3:13239900-13239919 Msa1093390:intron 40.0%
CGAAATTTACAGTTCCGTAG+CGG + chr7_3:13240098-13240117 Msa1093390:intron 40.0%
AAGTATCTACTTGATCGACG+AGG - chr7_3:13240144-13240163 Msa1093400:three_prime_UTR 40.0%
! CTAGCTTTCACAACATGTAG+AGG + chr7_3:13240208-13240227 Msa1093390:three_prime_UTR 40.0%
!! ATACTGTCGAAGCTTTTTCC+AGG + chr7_3:13240313-13240332 Msa1093390:three_prime_UTR 40.0%
ATTGGCAGTCATTAAATGCC+TGG - chr7_3:13240334-13240353 Msa1093400:three_prime_UTR 40.0%
GGAGTAAGGCTTAGTTTCAT+TGG - chr7_3:13240352-13240371 Msa1093400:exon 40.0%
AAGTCTTGCTTGTAGGAGTA+AGG - chr7_3:13240366-13240385 Msa1093400:CDS 40.0%
! ACTCCTACAAGCAAGACTTT+TGG + chr7_3:13240367-13240386 Msa1093390:three_prime_UTR 40.0%
AAGCCAAAAGTCTTGCTTGT+AGG - chr7_3:13240373-13240392 Msa1093400:CDS 40.0%
ATATGATGCTGATCTTCTGC+AGG - chr7_3:13240444-13240463 Msa1093400:intron 40.0%
! ATGGTTGTGAGAGCATAGAG+AGG - chr7_3:13237953-13237972 None:intergenic 45.0%
AGAAAGGTTGAGACCTGACA+TGG + chr7_3:13238344-13238363 Msa1093390:CDS 45.0%
TACAAAAGAGTGGTAGGGCA+TGG + chr7_3:13238420-13238439 Msa1093390:CDS 45.0%
ACAAAAGAGTGGTAGGGCAT+GGG + chr7_3:13238421-13238440 Msa1093390:CDS 45.0%
GTATCTCCAACAACCAGAGA+AGG + chr7_3:13238572-13238591 Msa1093390:CDS 45.0%
TAGGTTGCTAAAACCAGGAG+GGG + chr7_3:13239188-13239207 Msa1093390:CDS 45.0%
CCATAAGTGCATGGAGAGAA+GGG + chr7_3:13239253-13239272 Msa1093390:CDS 45.0%
TTATAGTAGGGTGCGACTTG+TGG + chr7_3:13239281-13239300 Msa1093390:CDS 45.0%
GGTTCAGTACTTCCAATCAG+TGG + chr7_3:13239302-13239321 Msa1093390:CDS 45.0%
CAGTACTTCCAATCAGTGGA+AGG + chr7_3:13239306-13239325 Msa1093390:CDS 45.0%
CTGTGAAACCTTCCACTGAT+TGG - chr7_3:13239317-13239336 None:intergenic 45.0%
ATCAGTGGAAGGTTTCACAG+AGG + chr7_3:13239317-13239336 Msa1093390:CDS 45.0%
! ATTACCAGAGCCCTTTTCTC+CGG - chr7_3:13239735-13239754 None:intergenic 45.0%
! GGCTCTGGTAATTCGAAGTT+CGG + chr7_3:13239743-13239762 Msa1093390:three_prime_UTR 45.0%
TAATTCGAAGTTCGGCCATG+AGG + chr7_3:13239751-13239770 Msa1093390:three_prime_UTR 45.0%
AGCTTCAAAACCTCCAACTG+TGG - chr7_3:13239913-13239932 Msa1093400:three_prime_UTR 45.0%
! TTCCGTAGCGGTTTTTCTGT+GGG + chr7_3:13240110-13240129 Msa1093390:three_prime_UTR 45.0%
TGCAGGATAATGCTACACTC+TGG - chr7_3:13240427-13240446 Msa1093400:intron 45.0%
TCAACATGAGTCACAAGGCG+TGG - chr7_3:13238288-13238307 None:intergenic 50.0%
CGACAACACAACTGTGGTTG+AGG - chr7_3:13239014-13239033 None:intergenic 50.0%
TCCAGCTACAATCAAGACCG+CGG - chr7_3:13239061-13239080 None:intergenic 50.0%
GCCATAAGTGCATGGAGAGA+AGG + chr7_3:13239252-13239271 Msa1093390:CDS 50.0%
CCCTTCTCTCCATGCACTTA+TGG - chr7_3:13239256-13239275 None:intergenic 50.0%
CAAGTCACCACTACTGAGCA+CGG + chr7_3:13239377-13239396 Msa1093390:CDS 50.0%
TTCATGACCGTGCTCAGTAG+TGG - chr7_3:13239387-13239406 None:intergenic 50.0%
AGCACGGTCATGAAGCTCTT+TGG + chr7_3:13239393-13239412 Msa1093390:CDS 50.0%
AGTCACTCCACACACTCTTG+AGG + chr7_3:13239519-13239538 Msa1093390:three_prime_UTR 50.0%
! TTACCAGAGCCCTTTTCTCC+GGG - chr7_3:13239734-13239753 None:intergenic 50.0%
! GTTCCGTAGCGGTTTTTCTG+TGG + chr7_3:13240109-13240128 Msa1093390:intron 50.0%
! TCCGTAGCGGTTTTTCTGTG+GGG + chr7_3:13240111-13240130 Msa1093390:three_prime_UTR 50.0%
GTGGTAGGGCATGGGATGAA+TGG + chr7_3:13238429-13238448 Msa1093390:CDS 55.0%
CTCACTATGAACACCCCTCC+TGG - chr7_3:13239204-13239223 None:intergenic 55.0%
GGAAGGTTTCACAGAGGCAG+AGG + chr7_3:13239323-13239342 Msa1093390:CDS 55.0%
AGGTTTCACAGAGGCAGAGG+TGG + chr7_3:13239326-13239345 Msa1093390:CDS 55.0%
TCACAGAGGCAGAGGTGGTT+AGG + chr7_3:13239331-13239350 Msa1093390:CDS 55.0%
CCCCCACAGAAAAACCGCTA+CGG - chr7_3:13240115-13240134 Msa1093400:three_prime_UTR 55.0%
! CCGTAGCGGTTTTTCTGTGG+GGG + chr7_3:13240112-13240131 Msa1093390:three_prime_UTR 55.0%
GCCGCGGTCTTGATTGTAGC+TGG + chr7_3:13239057-13239076 Msa1093390:intron 60.0%
! GGTGTTATCCCTCTGGCTCC+CGG + chr7_3:13239713-13239732 Msa1093390:three_prime_UTR 60.0%
! CCTTTTCTCCGGGAGCCAGA+GGG - chr7_3:13239724-13239743 None:intergenic 60.0%
! CCTCTGGCTCCCGGAGAAAA+GGG + chr7_3:13239722-13239741 Msa1093390:three_prime_UTR 60.0%
! CCCTCTGGCTCCCGGAGAAA+AGG + chr7_3:13239721-13239740 Msa1093390:three_prime_UTR 65.0%
! CCCTTTTCTCCGGGAGCCAG+AGG - chr7_3:13239725-13239744 None:intergenic 65.0%
GCTCCCGGAGAAAAGGGCTC+TGG + chr7_3:13239728-13239747 Msa1093390:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 13237905 13240499 13237905 ID=Msa1093390;Name=Msa1093390
chr7_3 mRNA 13237905 13240499 13237905 ID=Msa1093390-mRNA-1;Parent=Msa1093390;Name=Msa1093390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=191|1|1|1|0.5|0.33|3|674|271
chr7_3 exon 13237905 13238593 13237905 ID=Msa1093390-mRNA-1:exon:3104;Parent=Msa1093390-mRNA-1
chr7_3 exon 13239171 13239772 13239171 ID=Msa1093390-mRNA-1:exon:3105;Parent=Msa1093390-mRNA-1
chr7_3 exon 13240110 13240499 13240110 ID=Msa1093390-mRNA-1:exon:3106;Parent=Msa1093390-mRNA-1
chr7_3 five_prime_UTR 13237905 13238095 13237905 ID=Msa1093390-mRNA-1:five_prime_utr;Parent=Msa1093390-mRNA-1
chr7_3 CDS 13238096 13238593 13238096 ID=Msa1093390-mRNA-1:cds;Parent=Msa1093390-mRNA-1
chr7_3 CDS 13239171 13239488 13239171 ID=Msa1093390-mRNA-1:cds;Parent=Msa1093390-mRNA-1
chr7_3 three_prime_UTR 13239489 13239772 13239489 ID=Msa1093390-mRNA-1:three_prime_utr;Parent=Msa1093390-mRNA-1
chr7_3 three_prime_UTR 13240110 13240499 13240110 ID=Msa1093390-mRNA-1:three_prime_utr;Parent=Msa1093390-mRNA-1
Gene Sequence

>Msa1093390

ATGCAAACCAATCTACATGCCATCTACACACCTCATATCAAAACTCCAACCAAAATAGTTAGCACATTAAATGAAAATAGCCAAACCAATCAACAATCTTCTTCTGTAGGCAAAATTAAACGTTTTGTTCTTACACAAGAAGGAAGGACCAAATTGAACCTTATCCAAGATAAAGAGTTTTATGCATATCCACGCCTTGTGACTCATGTTGATGATGGATTCATTTCAACACTAACAAATCTTTACAGAGAAAGGTTGAGACCTGACATGGAGATTCTTGATCTCATGAGTTCTTGGGTTAGTCATCTACCAAATGATGTAAAATACAAAAGAGTGGTAGGGCATGGGATGAATGGACAAGAACTTGCAAAGAATTCAAGGTTGGATTACTTTGTCATAAAGGATCTTAACAAAGATCAACAGTTTGAATTTGAGAGTTGCACTTTTGATGCAGTTTTGTGTACTGTTAGTGTGCAGTATCTCCAACAACCAGAGAAGGTATTTGCAGAGGTGTTTAGGTTGCTAAAACCAGGAGGGGTGTTCATAGTGAGTTTTAGCAACAGAATGTTTTATGAGAAAGCCATAAGTGCATGGAGAGAAGGGACTACTTATAGTAGGGTGCGACTTGTGGTTCAGTACTTCCAATCAGTGGAAGGTTTCACAGAGGCAGAGGTGGTTAGGAAACTTCCAACTACCATTGATGACAAGTCACCACTACTGAGCACGGTCATGAAGCTCTTTGGATTGTTTTCAGCGTCAGATCCCTTTTATGCAGTTATTGCTTATAGGAATTTTAAACCAATACATGATGATTAA

Protein sequence

>Msa1093390

MQTNLHAIYTPHIKTPTKIVSTLNENSQTNQQSSSVGKIKRFVLTQEGRTKLNLIQDKEFYAYPRLVTHVDDGFISTLTNLYRERLRPDMEILDLMSSWVSHLPNDVKYKRVVGHGMNGQELAKNSRLDYFVIKDLNKDQQFEFESCTFDAVLCTVSVQYLQQPEKVFAEVFRLLKPGGVFIVSFSNRMFYEKAISAWREGTTYSRVRLVVQYFQSVEGFTEAEVVRKLPTTIDDKSPLLSTVMKLFGLFSASDPFYAVIAYRNFKPIHDD*