AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1055360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1055360 MtrunA17_Chr7g0226681 96.679 271 8 1 1 270 14 284 0.0 539
Msa1055360 MtrunA17_Chr6g0488521 40.206 194 112 1 39 228 95 288 3.00e-45 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1055360 AT3G01660.1 63.602 261 89 3 11 269 17 273 2.59e-121 347
Msa1055360 AT4G29590.1 36.406 217 131 2 20 229 82 298 7.88e-44 151

Find 113 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATACATGATGATTAAAT+TGG 0.124999 7_2:-29576070 Msa1055360:exon
ATTTAATGTGCAAACTATTT+TGG 0.159116 7_2:+29577399 None:intergenic
ATAAGCAATAACTGCATAAA+AGG 0.169260 7_2:+29576105 None:intergenic
CATATTAACAAATTATAATA+TGG 0.189350 7_2:-29574892 Msa1055360:three_prime_UTR
TTGTATACCATATGCATTAT+TGG 0.206333 7_2:+29577557 None:intergenic
CCCTTCTCTCCATGCACTTA+TGG 0.211437 7_2:+29576288 None:intergenic
TGTAGCTGAAATGAAATTAA+AGG 0.219999 7_2:+29577629 None:intergenic
TGTATACCATATGCATTATT+GGG 0.235224 7_2:+29577558 None:intergenic
TTTATGCAGTTATTGCTTAT+AGG 0.245402 7_2:-29576102 Msa1055360:CDS
ATCTTGGATAAGGTTCAATT+TGG 0.247707 7_2:+29577303 None:intergenic
TTCTTGATCTCATGAGTTCT+TGG 0.266453 7_2:-29577177 Msa1055360:CDS
ATGAGAGTAAAGAGTAATTT+AGG 0.274011 7_2:+29574912 Msa1055350:intron
TGGAGTTTGGAGTAGCTATT+TGG 0.284572 7_2:+29577474 None:intergenic
AGGTATTTGCAGAGGTGTTT+AGG 0.295860 7_2:-29576372 Msa1055360:CDS
AGCACGGTCATGAAGCTCTT+TGG 0.299546 7_2:-29576148 Msa1055360:CDS
ATGAAATTAAAGGCATCTTT+TGG 0.317779 7_2:+29577639 None:intergenic
GTTGGATTACTTTGTCATAA+AGG 0.320022 7_2:-29577071 Msa1055360:CDS
GATAAATCTATTGATGGTTT+CGG 0.331434 7_2:-29575257 Msa1055360:three_prime_UTR
ATGCATAAAACTCTTTATCT+TGG 0.343449 7_2:+29577287 None:intergenic
TGGTTTGCATTGTTGGAGTT+TGG 0.344806 7_2:+29577461 None:intergenic
TGTAGATTGGTTTGCATTGT+TGG 0.347566 7_2:+29577454 None:intergenic
CAGTACTTCCAATCAGTAGA+AGG 0.349953 7_2:-29576235 Msa1055360:CDS
AAAACTCTTTATCTTGGATA+AGG 0.357532 7_2:+29577293 None:intergenic
CTGAAGATTGTTGATTGGTT+TGG 0.370419 7_2:+29577368 None:intergenic
GAGAAGGGACTACTTATAGT+AGG 0.371810 7_2:-29576273 Msa1055360:CDS
CCAATTTAATCATCATGTAT+TGG 0.377264 7_2:+29576070 None:intergenic
CCCTCTGGCTCCCGGAGAAA+AGG 0.384023 7_2:-29575817 Msa1055360:three_prime_UTR
ATGAAAAGTGGTAATAGAAA+TGG 0.385605 7_2:-29575964 Msa1055360:three_prime_UTR
CTCCGTTCTAAGTGTTGTTA+AGG 0.387864 7_2:-29575013 Msa1055360:three_prime_UTR
AAGCCAAAAGTCTTGCTTGT+AGG 0.399979 7_2:+29575161 Msa1055350:CDS
ATCTGACCTTCTCTGGTTGT+TGG 0.403168 7_2:+29576969 None:intergenic
GGAGTAAGGCTTAGTTTCAT+TGG 0.405458 7_2:+29575182 Msa1055350:exon
TAACAAATCTTTACAGAGAA+AGG 0.406271 7_2:-29577219 Msa1055360:CDS
CTGTGAAACCTTCTACTGAT+TGG 0.411697 7_2:+29576227 None:intergenic
TTAGAACGGAGGGAGTATAT+AGG 0.414797 7_2:+29575025 Msa1055350:intron
GCAATATATCTGACCTTCTC+TGG 0.414871 7_2:+29576962 None:intergenic
TCTTGATCTCATGAGTTCTT+GGG 0.417962 7_2:-29577176 Msa1055360:CDS
ACTCCTACAAGCAAGACTTT+TGG 0.420674 7_2:-29575164 Msa1055360:three_prime_UTR
GGAGTTTGGAGTAGCTATTT+GGG 0.425650 7_2:+29577475 None:intergenic
ATTGGCAGTCATTAAATGCC+TGG 0.426852 7_2:+29575200 Msa1055350:three_prime_UTR
AATCTGCAACACTTTCAGTT+AGG 0.437506 7_2:-29575287 Msa1055360:three_prime_UTR
AAGTCTTGCTTGTAGGAGTA+AGG 0.439077 7_2:+29575168 Msa1055350:CDS
ATCTATTGATGGTTTCGGAT+TGG 0.440989 7_2:-29575252 Msa1055360:three_prime_UTR
GTAAAATACAAAAGAGTGGC+AGG 0.442164 7_2:-29577133 Msa1055360:CDS
TAGAACGGAGGGAGTATATA+GGG 0.443298 7_2:+29575026 Msa1055350:intron
CAATACATGATGATTAAATT+GGG 0.445819 7_2:-29576069 Msa1055360:exon
AGATGAGATAAATCTATTGA+TGG 0.451747 7_2:-29575263 Msa1055360:three_prime_UTR
GCCAACTGAAGATTGTTGAT+TGG 0.452329 7_2:+29577363 None:intergenic
GGTGTTATCCCTCTGGCTCC+CGG 0.456165 7_2:-29575825 Msa1055360:three_prime_UTR
GGCTCTGGTAATTCGAAGTT+CGG 0.457484 7_2:-29575795 Msa1055360:three_prime_UTR
TGTGTAGATGGCATGTAGAT+TGG 0.465248 7_2:+29577441 None:intergenic
TTTGATATGAGGTGTGTAGA+TGG 0.468519 7_2:+29577429 None:intergenic
AAGCAATCAATGGTTGTTAG+AGG 0.469023 7_2:+29577585 None:intergenic
AGAACAAGCTAATTAAGTTA+TGG 0.477646 7_2:+29575858 None:intergenic
GTGGCAGGGCATGGGATGAA+TGG 0.480092 7_2:-29577118 Msa1055360:CDS
ATATTAACAAATTATAATAT+GGG 0.481105 7_2:-29574891 Msa1055360:three_prime_UTR
CCTCTGGCTCCCGGAGAAAA+GGG 0.491396 7_2:-29575816 Msa1055360:three_prime_UTR
TACAAAAGAGTGGCAGGGCA+TGG 0.492615 7_2:-29577127 Msa1055360:CDS
TAAGCAATAACTGCATAAAA+GGG 0.492787 7_2:+29576106 None:intergenic
TCTGATATCACAATACGTAT+TGG 0.498164 7_2:-29575351 Msa1055360:three_prime_UTR
CTCACTATGAACACCCCTCC+TGG 0.504729 7_2:+29576340 None:intergenic
GATTTGTCATCAATGGTAGT+TGG 0.509629 7_2:+29576181 None:intergenic
AGATCAAGAATCTCCATGTC+AGG 0.511558 7_2:+29577190 None:intergenic
CAAATTATAATATGGGATGG+AGG 0.512266 7_2:-29574884 Msa1055360:three_prime_UTR
TGTATTAACAATATGAAAAG+TGG 0.515340 7_2:-29575976 Msa1055360:three_prime_UTR
TAGTGGTGATTTGTCATCAA+TGG 0.515771 7_2:+29576174 None:intergenic
AGAAGGTTTCACAGAGGCAG+AGG 0.518448 7_2:-29576218 Msa1055360:CDS
GCCATAAGTGCATGGAGAGA+AGG 0.518478 7_2:-29576289 Msa1055360:CDS
ATATGATGCTGATCTTCTGC+AGG 0.527558 7_2:+29575090 Msa1055350:intron
GTAGCTATTTGGGTGAAAAG+TGG 0.533984 7_2:+29577485 None:intergenic
ATGGTTGTTAGAGGATAGAG+AGG 0.534094 7_2:+29577594 None:intergenic
ACTTGCAAAGAATCCAAGGT+TGG 0.534361 7_2:-29577089 Msa1055360:CDS
ACAAAAGAGTGGCAGGGCAT+GGG 0.535890 7_2:-29577126 Msa1055360:CDS
ATGACAAAGTAATCCAACCT+TGG 0.540131 7_2:+29577076 None:intergenic
CCATAAGTGCATGGAGAGAA+GGG 0.541068 7_2:-29576288 Msa1055360:CDS
TTATAGTAGGGTGCGACTTG+TGG 0.542539 7_2:-29576260 Msa1055360:CDS
GTATACCATATGCATTATTG+GGG 0.543687 7_2:+29577559 None:intergenic
AAATTATAATATGGGATGGA+GGG 0.545773 7_2:-29574883 Msa1055360:three_prime_UTR
GTCACTACCACTCACTATTG+AGG 0.546392 7_2:-29576021 Msa1055360:three_prime_UTR
GCTCCCGGAGAAAAGGGCTC+TGG 0.551154 7_2:-29575810 Msa1055360:three_prime_UTR
TGTGTGACTCAATTATAGTC+TGG 0.552138 7_2:-29575893 Msa1055360:three_prime_UTR
TAACAAATTATAATATGGGA+TGG 0.554762 7_2:-29574887 Msa1055360:three_prime_UTR
CTTGTGACTCATGTTGATGA+TGG 0.555804 7_2:-29577256 Msa1055360:CDS
ATCCTTAACAACACTTAGAA+CGG 0.560241 7_2:+29575011 Msa1055350:intron
AGGTTTCACAGAGGCAGAGG+TGG 0.561017 7_2:-29576215 Msa1055360:CDS
ACCAATCAACAATCTTCAGT+TGG 0.566352 7_2:-29577364 Msa1055360:CDS
GTGTTTAGGTTGCTAAAACC+AGG 0.582281 7_2:-29576358 Msa1055360:CDS
TTCATGACCGTGCTCAGTAG+TGG 0.584220 7_2:+29576157 None:intergenic
AAGAACTTGCAAAGAATCCA+AGG 0.593998 7_2:-29577093 Msa1055360:CDS
CTAGCTTTCACAACATGTAG+AGG 0.595195 7_2:-29575323 Msa1055360:three_prime_UTR
AGAAGGGACTACTTATAGTA+GGG 0.601293 7_2:-29576272 Msa1055360:CDS
ATGAGAAAGCCATAAGTGCA+TGG 0.601564 7_2:-29576297 Msa1055360:CDS
TGCAGGATAATGCTACACTC+TGG 0.605445 7_2:+29575107 Msa1055350:intron
TCAACATGAGTCACAAGGCG+TGG 0.605771 7_2:+29577262 None:intergenic
GTATCTCCAACAACCAGAGA+AGG 0.623557 7_2:-29576975 Msa1055360:intron
TTAACAACACTTAGAACGGA+GGG 0.623970 7_2:+29575015 Msa1055350:intron
TAATTCACAGGTATTTGCAG+AGG 0.627593 7_2:-29576380 Msa1055360:intron
CAAATCACCACTACTGAGCA+CGG 0.629618 7_2:-29576164 Msa1055360:CDS
AGAAAGGTTGAGACCTGACA+TGG 0.635102 7_2:-29577203 Msa1055360:CDS
TAGGTTGCTAAAACCAGGAG+GGG 0.635714 7_2:-29576353 Msa1055360:CDS
TGATGTAAAATACAAAAGAG+TGG 0.641361 7_2:-29577137 Msa1055360:CDS
CTTAACAACACTTAGAACGG+AGG 0.645447 7_2:+29575014 Msa1055350:intron
TAAAATACAAAAGAGTGGCA+GGG 0.646966 7_2:-29577132 Msa1055360:CDS
CATCATCAACATGAGTCACA+AGG 0.647019 7_2:+29577257 None:intergenic
AATACGTATTGTGATATCAG+AGG 0.654032 7_2:+29575353 Msa1055350:three_prime_UTR
ATTTCATCCTCAATAGTGAG+TGG 0.667699 7_2:+29576014 None:intergenic
TAATTCGAAGTTCGGCCATG+AGG 0.668950 7_2:-29575787 Msa1055360:intron
ATTTACAGTCAGTTCCGTAG+CGG 0.670908 7_2:-29575433 Msa1055360:intron
TATACCATATGCATTATTGG+GGG 0.671620 7_2:+29577560 None:intergenic
TTTAGGTTGCTAAAACCAGG+AGG 0.688060 7_2:-29576355 Msa1055360:CDS
TTAGGTTGCTAAAACCAGGA+GGG 0.690482 7_2:-29576354 Msa1055360:CDS
ATCAGTAGAAGGTTTCACAG+AGG 0.734763 7_2:-29576224 Msa1055360:CDS
AAGTATCTACTTGATCGACG+AGG 0.791825 7_2:+29575390 Msa1055350:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATGGATAAAAAAAATT+AGG + chr7_2:29576771-29576790 None:intergenic 10.0%
!! CATATTAACAAATTATAATA+TGG - chr7_2:29577578-29577597 Msa1055360:five_prime_UTR 10.0%
!!! TTATAATTTTGATACATTCA+AGG + chr7_2:29575702-29575721 Msa1055350:three_prime_UTR 15.0%
!! TCAAAATTATAAAAATATCC+CGG - chr7_2:29575710-29575729 Msa1055360:intron 15.0%
!!! ATTTAATGTGCAAACTATTT+TGG + chr7_2:29575074-29575093 Msa1055350:intron 20.0%
!!! CTTTTGTATTTTACATCATT+TGG + chr7_2:29575331-29575350 Msa1055350:three_prime_UTR 20.0%
!!! TAGAAATTTCTCTATAGTTT+TGG + chr7_2:29575616-29575635 Msa1055350:three_prime_UTR 20.0%
!! AATAAACTCATAAATTCTTG+TGG + chr7_2:29576053-29576072 None:intergenic 20.0%
!! TACTAATAAAGATAATTCAC+AGG - chr7_2:29576078-29576097 Msa1055360:CDS 20.0%
!! CAATACATGATGATTAAATT+GGG - chr7_2:29576401-29576420 Msa1055360:intron 20.0%
!! TGTATTAACAATATGAAAAG+TGG - chr7_2:29576494-29576513 Msa1055360:intron 20.0%
!! AACTAGATAAATTTACACAA+AGG - chr7_2:29576731-29576750 Msa1055360:intron 20.0%
!!! AATGTTGTGTTTAAGATTTA+TGG + chr7_2:29576786-29576805 None:intergenic 20.0%
!! AATCTTAATCCTACAATTTA+AGG - chr7_2:29576990-29577009 Msa1055360:CDS 20.0%
!! TAACAAATTATAATATGGGA+TGG - chr7_2:29577583-29577602 Msa1055360:five_prime_UTR 20.0%
!!! ATGAAATTAAAGGCATCTTT+TGG + chr7_2:29574834-29574853 Msa1055350:intron 25.0%
! TGTAGCTGAAATGAAATTAA+AGG + chr7_2:29574844-29574863 Msa1055350:intron 25.0%
! TGTATACCATATGCATTATT+GGG + chr7_2:29574915-29574934 Msa1055350:intron 25.0%
! TTGTATACCATATGCATTAT+TGG + chr7_2:29574916-29574935 Msa1055350:intron 25.0%
!!! TTGGTTGAAATTTTGATATG+AGG + chr7_2:29575055-29575074 Msa1055350:intron 25.0%
! AAAACTCTTTATCTTGGATA+AGG + chr7_2:29575180-29575199 Msa1055350:exon 25.0%
! ATGCATAAAACTCTTTATCT+TGG + chr7_2:29575186-29575205 Msa1055350:exon 25.0%
! TAACAAATCTTTACAGAGAA+AGG - chr7_2:29575251-29575270 Msa1055360:three_prime_UTR 25.0%
! TGATGTAAAATACAAAAGAG+TGG - chr7_2:29575333-29575352 Msa1055360:three_prime_UTR 25.0%
! AATTTCTAACAGTTAATCGA+AGG - chr7_2:29575628-29575647 Msa1055360:intron 25.0%
! TAAGCAATAACTGCATAAAA+GGG + chr7_2:29576367-29576386 None:intergenic 25.0%
! ATAAGCAATAACTGCATAAA+AGG + chr7_2:29576368-29576387 None:intergenic 25.0%
! TTTATGCAGTTATTGCTTAT+AGG - chr7_2:29576368-29576387 Msa1055360:CDS 25.0%
! CCAATTTAATCATCATGTAT+TGG + chr7_2:29576403-29576422 None:intergenic 25.0%
! CCAATACATGATGATTAAAT+TGG - chr7_2:29576400-29576419 Msa1055360:intron 25.0%
! ATGAAAAGTGGTAATAGAAA+TGG - chr7_2:29576506-29576525 Msa1055360:intron 25.0%
! AGAACAAGCTAATTAAGTTA+TGG + chr7_2:29576615-29576634 None:intergenic 25.0%
!!! TTAGCTTGTTCTCTTTTTTT+TGG - chr7_2:29576623-29576642 Msa1055360:intron 25.0%
!!! TAGCTTGTTCTCTTTTTTTT+GGG - chr7_2:29576624-29576643 Msa1055360:intron 25.0%
! AGATGAGATAAATCTATTGA+TGG - chr7_2:29577207-29577226 Msa1055360:CDS 25.0%
!! GATAAATCTATTGATGGTTT+CGG - chr7_2:29577213-29577232 Msa1055360:CDS 25.0%
! ATGAGAGTAAAGAGTAATTT+AGG + chr7_2:29577561-29577580 None:intergenic 25.0%
! AAATTATAATATGGGATGGA+GGG - chr7_2:29577587-29577606 Msa1055360:five_prime_UTR 25.0%
TATACCATATGCATTATTGG+GGG + chr7_2:29574913-29574932 Msa1055350:intron 30.0%
GTATACCATATGCATTATTG+GGG + chr7_2:29574914-29574933 Msa1055350:intron 30.0%
ATCTTGGATAAGGTTCAATT+TGG + chr7_2:29575170-29575189 Msa1055350:CDS 30.0%
TAAAATACAAAAGAGTGGCA+GGG - chr7_2:29575338-29575357 Msa1055360:three_prime_UTR 30.0%
GTTGGATTACTTTGTCATAA+AGG - chr7_2:29575399-29575418 Msa1055360:three_prime_UTR 30.0%
GATTGACAATAGATAAGGTT+TGG + chr7_2:29575552-29575571 Msa1055350:three_prime_UTR 30.0%
CTTGAGATTGACAATAGATA+AGG + chr7_2:29575557-29575576 Msa1055350:three_prime_UTR 30.0%
ACCAAAGAAAAAGTAAGGTT+GGG + chr7_2:29575581-29575600 Msa1055350:three_prime_UTR 30.0%
AACCAAAGAAAAAGTAAGGT+TGG + chr7_2:29575582-29575601 Msa1055350:three_prime_UTR 30.0%
CCAAAACCAAAGAAAAAGTA+AGG + chr7_2:29575586-29575605 Msa1055350:three_prime_UTR 30.0%
!!! CCTTACTTTTTCTTTGGTTT+TGG - chr7_2:29575583-29575602 Msa1055360:intron 30.0%
! GTCTTTTGCTAGTAATACTA+TGG + chr7_2:29575808-29575827 None:intergenic 30.0%
GAAGAGAATGAGAAAAATGA+AGG + chr7_2:29576548-29576567 None:intergenic 30.0%
AGTGTATTGCCTTAAATTGT+AGG + chr7_2:29577002-29577021 None:intergenic 30.0%
AATACGTATTGTGATATCAG+AGG + chr7_2:29577120-29577139 None:intergenic 30.0%
TCTGATATCACAATACGTAT+TGG - chr7_2:29577119-29577138 Msa1055360:CDS 30.0%
ATCCTTAACAACACTTAGAA+CGG + chr7_2:29577462-29577481 None:intergenic 30.0%
CAAATTATAATATGGGATGG+AGG - chr7_2:29577586-29577605 Msa1055360:five_prime_UTR 30.0%
AAGCAATCAATGGTTGTTAG+AGG + chr7_2:29574888-29574907 Msa1055350:intron 35.0%
TTATCCCCCAATAATGCATA+TGG - chr7_2:29574906-29574925 Msa1055360:three_prime_UTR 35.0%
!! TGTAGATTGGTTTGCATTGT+TGG + chr7_2:29575019-29575038 Msa1055350:intron 35.0%
TTTGATATGAGGTGTGTAGA+TGG + chr7_2:29575044-29575063 Msa1055350:intron 35.0%
! CTGAAGATTGTTGATTGGTT+TGG + chr7_2:29575105-29575124 Msa1055350:intron 35.0%
ACCAATCAACAATCTTCAGT+TGG - chr7_2:29575106-29575125 Msa1055360:three_prime_UTR 35.0%
!! CGTTTTGTTCTTACACAAGA+AGG - chr7_2:29575139-29575158 Msa1055360:three_prime_UTR 35.0%
TTCTTGATCTCATGAGTTCT+TGG - chr7_2:29575293-29575312 Msa1055360:three_prime_UTR 35.0%
TCTTGATCTCATGAGTTCTT+GGG - chr7_2:29575294-29575313 Msa1055360:three_prime_UTR 35.0%
GTAAAATACAAAAGAGTGGC+AGG - chr7_2:29575337-29575356 Msa1055360:three_prime_UTR 35.0%
AAGAACTTGCAAAGAATCCA+AGG - chr7_2:29575377-29575396 Msa1055360:three_prime_UTR 35.0%
ATGACAAAGTAATCCAACCT+TGG + chr7_2:29575397-29575416 Msa1055350:three_prime_UTR 35.0%
!!! TCCCAACCTTACTTTTTCTT+TGG - chr7_2:29575577-29575596 Msa1055360:intron 35.0%
!! CTTTTTGGCGTGTTTTTCAT+TGG - chr7_2:29575740-29575759 Msa1055360:intron 35.0%
ACTAACAGAAGACATGTTTG+TGG + chr7_2:29575776-29575795 None:intergenic 35.0%
CAAACATGTCTTCTGTTAGT+CGG - chr7_2:29575776-29575795 Msa1055360:intron 35.0%
TAATTCACAGGTATTTGCAG+AGG - chr7_2:29576090-29576109 Msa1055360:CDS 35.0%
AGAAGGGACTACTTATAGTA+GGG - chr7_2:29576198-29576217 Msa1055360:CDS 35.0%
GATTTGTCATCAATGGTAGT+TGG + chr7_2:29576292-29576311 None:intergenic 35.0%
! TAGTGGTGATTTGTCATCAA+TGG + chr7_2:29576299-29576318 None:intergenic 35.0%
ATTTCATCCTCAATAGTGAG+TGG + chr7_2:29576459-29576478 None:intergenic 35.0%
TGTGTGACTCAATTATAGTC+TGG - chr7_2:29576577-29576596 Msa1055360:intron 35.0%
ACAAAACTATACTCACCTCA+TGG + chr7_2:29576701-29576720 None:intergenic 35.0%
AAACTTCAAAACCTCTCCAA+CGG + chr7_2:29576849-29576868 None:intergenic 35.0%
AATCTGCAACACTTTCAGTT+AGG - chr7_2:29577183-29577202 Msa1055360:CDS 35.0%
! ATCTATTGATGGTTTCGGAT+TGG - chr7_2:29577218-29577237 Msa1055360:CDS 35.0%
TTAACAACACTTAGAACGGA+GGG + chr7_2:29577458-29577477 None:intergenic 35.0%
ATGGTTGTTAGAGGATAGAG+AGG + chr7_2:29574879-29574898 Msa1055350:intron 40.0%
ATTGGGGGATAAGCAATCAA+TGG + chr7_2:29574898-29574917 Msa1055350:intron 40.0%
GTAGCTATTTGGGTGAAAAG+TGG + chr7_2:29574988-29575007 Msa1055350:intron 40.0%
! GGAGTTTGGAGTAGCTATTT+GGG + chr7_2:29574998-29575017 Msa1055350:intron 40.0%
! TGGAGTTTGGAGTAGCTATT+TGG + chr7_2:29574999-29575018 Msa1055350:intron 40.0%
! TGGTTTGCATTGTTGGAGTT+TGG + chr7_2:29575012-29575031 Msa1055350:intron 40.0%
TGTGTAGATGGCATGTAGAT+TGG + chr7_2:29575032-29575051 Msa1055350:intron 40.0%
GCCAACTGAAGATTGTTGAT+TGG + chr7_2:29575110-29575129 Msa1055350:intron 40.0%
CATCATCAACATGAGTCACA+AGG + chr7_2:29575216-29575235 Msa1055350:three_prime_UTR 40.0%
! CTTGTGACTCATGTTGATGA+TGG - chr7_2:29575214-29575233 Msa1055360:three_prime_UTR 40.0%
AGATCAAGAATCTCCATGTC+AGG + chr7_2:29575283-29575302 Msa1055350:three_prime_UTR 40.0%
ACTTGCAAAGAATCCAAGGT+TGG - chr7_2:29575381-29575400 Msa1055360:three_prime_UTR 40.0%
GCAATATATCTGACCTTCTC+TGG + chr7_2:29575511-29575530 Msa1055350:three_prime_UTR 40.0%
! TATCCCGGAGTCTTTCTTTT+TGG - chr7_2:29575725-29575744 Msa1055360:intron 40.0%
ACTAGCAAAAGACACACTGA+TGG - chr7_2:29575815-29575834 Msa1055360:three_prime_UTR 40.0%
TATTTGCGACAACACAACTG+TGG + chr7_2:29575949-29575968 None:intergenic 40.0%
!! AGGTATTTGCAGAGGTGTTT+AGG - chr7_2:29576098-29576117 Msa1055360:CDS 40.0%
!! GTGTTTAGGTTGCTAAAACC+AGG - chr7_2:29576112-29576131 Msa1055360:CDS 40.0%
!! TTTAGGTTGCTAAAACCAGG+AGG - chr7_2:29576115-29576134 Msa1055360:CDS 40.0%
! TTAGGTTGCTAAAACCAGGA+GGG - chr7_2:29576116-29576135 Msa1055360:CDS 40.0%
ATGAGAAAGCCATAAGTGCA+TGG - chr7_2:29576173-29576192 Msa1055360:CDS 40.0%
GAGAAGGGACTACTTATAGT+AGG - chr7_2:29576197-29576216 Msa1055360:CDS 40.0%
CAGTACTTCCAATCAGTAGA+AGG - chr7_2:29576235-29576254 Msa1055360:CDS 40.0%
CTGTGAAACCTTCTACTGAT+TGG + chr7_2:29576246-29576265 None:intergenic 40.0%
ATCAGTAGAAGGTTTCACAG+AGG - chr7_2:29576246-29576265 Msa1055360:CDS 40.0%
!!! TTTTTTGGGTGTTATCCCTC+TGG - chr7_2:29576638-29576657 Msa1055360:intron 40.0%
ATTTACAGTCAGTTCCGTAG+CGG - chr7_2:29577037-29577056 Msa1055360:CDS 40.0%
AAGTATCTACTTGATCGACG+AGG + chr7_2:29577083-29577102 None:intergenic 40.0%
! CTAGCTTTCACAACATGTAG+AGG - chr7_2:29577147-29577166 Msa1055360:CDS 40.0%
!! ATACTGTCGAAGCTTTTTCC+AGG - chr7_2:29577252-29577271 Msa1055360:CDS 40.0%
ATTGGCAGTCATTAAATGCC+TGG + chr7_2:29577273-29577292 None:intergenic 40.0%
GGAGTAAGGCTTAGTTTCAT+TGG + chr7_2:29577291-29577310 None:intergenic 40.0%
AAGTCTTGCTTGTAGGAGTA+AGG + chr7_2:29577305-29577324 None:intergenic 40.0%
! ACTCCTACAAGCAAGACTTT+TGG - chr7_2:29577306-29577325 Msa1055360:CDS 40.0%
AAGCCAAAAGTCTTGCTTGT+AGG + chr7_2:29577312-29577331 None:intergenic 40.0%
ATATGATGCTGATCTTCTGC+AGG + chr7_2:29577383-29577402 None:intergenic 40.0%
! TAGAACGGAGGGAGTATATA+GGG + chr7_2:29577447-29577466 None:intergenic 40.0%
! TTAGAACGGAGGGAGTATAT+AGG + chr7_2:29577448-29577467 None:intergenic 40.0%
CTTAACAACACTTAGAACGG+AGG + chr7_2:29577459-29577478 None:intergenic 40.0%
! CTCCGTTCTAAGTGTTGTTA+AGG - chr7_2:29577457-29577476 Msa1055360:exon 40.0%
AGAAAGGTTGAGACCTGACA+TGG - chr7_2:29575267-29575286 Msa1055360:three_prime_UTR 45.0%
GTATCTCCAACAACCAGAGA+AGG - chr7_2:29575495-29575514 Msa1055360:intron 45.0%
ATCTGACCTTCTCTGGTTGT+TGG + chr7_2:29575504-29575523 Msa1055350:three_prime_UTR 45.0%
ACGCCAAAAAGAAAGACTCC+GGG + chr7_2:29575731-29575750 Msa1055350:three_prime_UTR 45.0%
CACGCCAAAAAGAAAGACTC+CGG + chr7_2:29575732-29575751 Msa1055350:three_prime_UTR 45.0%
CTGATCGAATGTGTCTCATG+TGG - chr7_2:29575917-29575936 Msa1055360:three_prime_UTR 45.0%
TGATGTCGCAGTCTTGATTG+CGG - chr7_2:29575982-29576001 Msa1055360:three_prime_UTR 45.0%
TAGGTTGCTAAAACCAGGAG+GGG - chr7_2:29576117-29576136 Msa1055360:CDS 45.0%
CCATAAGTGCATGGAGAGAA+GGG - chr7_2:29576182-29576201 Msa1055360:CDS 45.0%
TTATAGTAGGGTGCGACTTG+TGG - chr7_2:29576210-29576229 Msa1055360:CDS 45.0%
CAAATCACCACTACTGAGCA+CGG - chr7_2:29576306-29576325 Msa1055360:CDS 45.0%
GTCACTACCACTCACTATTG+AGG - chr7_2:29576449-29576468 Msa1055360:intron 45.0%
! ATTACCAGAGCCCTTTTCTC+CGG + chr7_2:29576667-29576686 None:intergenic 45.0%
! GGCTCTGGTAATTCGAAGTT+CGG - chr7_2:29576675-29576694 Msa1055360:intron 45.0%
TAATTCGAAGTTCGGCCATG+AGG - chr7_2:29576683-29576702 Msa1055360:intron 45.0%
!! CCAACGGTGGTTGATTCTTT+TGG + chr7_2:29576833-29576852 None:intergenic 45.0%
CCAAAAGAATCAACCACCGT+TGG - chr7_2:29576830-29576849 Msa1055360:intron 45.0%
! TTCCGTAGCGGTTTTTCTGT+GGG - chr7_2:29577049-29577068 Msa1055360:CDS 45.0%
TGCAGGATAATGCTACACTC+TGG + chr7_2:29577366-29577385 None:intergenic 45.0%
!! ATATTAACAAATTATAATAT+GGG - chr7_2:29577579-29577598 Msa1055360:five_prime_UTR 5.0%
TCAACATGAGTCACAAGGCG+TGG + chr7_2:29575211-29575230 Msa1055350:three_prime_UTR 50.0%
TACAAAAGAGTGGCAGGGCA+TGG - chr7_2:29575343-29575362 Msa1055360:three_prime_UTR 50.0%
ACAAAAGAGTGGCAGGGCAT+GGG - chr7_2:29575344-29575363 Msa1055360:three_prime_UTR 50.0%
CGACAACACAACTGTGGTTG+AGG + chr7_2:29575943-29575962 None:intergenic 50.0%
GCCATAAGTGCATGGAGAGA+AGG - chr7_2:29576181-29576200 Msa1055360:CDS 50.0%
CCCTTCTCTCCATGCACTTA+TGG + chr7_2:29576185-29576204 None:intergenic 50.0%
AGAAGGTTTCACAGAGGCAG+AGG - chr7_2:29576252-29576271 Msa1055360:CDS 50.0%
TTCATGACCGTGCTCAGTAG+TGG + chr7_2:29576316-29576335 None:intergenic 50.0%
AGCACGGTCATGAAGCTCTT+TGG - chr7_2:29576322-29576341 Msa1055360:CDS 50.0%
! TTACCAGAGCCCTTTTCTCC+GGG + chr7_2:29576666-29576685 None:intergenic 50.0%
AGAATCAACCACCGTTGGAG+AGG - chr7_2:29576835-29576854 Msa1055360:intron 50.0%
CTTCAAAACCTCTCCAACGG+TGG + chr7_2:29576846-29576865 None:intergenic 50.0%
! GTTCCGTAGCGGTTTTTCTG+TGG - chr7_2:29577048-29577067 Msa1055360:CDS 50.0%
! TCCGTAGCGGTTTTTCTGTG+GGG - chr7_2:29577050-29577069 Msa1055360:CDS 50.0%
CTCACTATGAACACCCCTCC+TGG + chr7_2:29576133-29576152 None:intergenic 55.0%
AGGTTTCACAGAGGCAGAGG+TGG - chr7_2:29576255-29576274 Msa1055360:CDS 55.0%
CCCCCACAGAAAAACCGCTA+CGG + chr7_2:29577054-29577073 None:intergenic 55.0%
! CCGTAGCGGTTTTTCTGTGG+GGG - chr7_2:29577051-29577070 Msa1055360:CDS 55.0%
GTGGCAGGGCATGGGATGAA+TGG - chr7_2:29575352-29575371 Msa1055360:three_prime_UTR 60.0%
GTCGCAGTCTTGATTGCGGC+TGG - chr7_2:29575986-29576005 Msa1055360:three_prime_UTR 60.0%
! GGTGTTATCCCTCTGGCTCC+CGG - chr7_2:29576645-29576664 Msa1055360:intron 60.0%
! CCTTTTCTCCGGGAGCCAGA+GGG + chr7_2:29576656-29576675 None:intergenic 60.0%
! CCTCTGGCTCCCGGAGAAAA+GGG - chr7_2:29576654-29576673 Msa1055360:intron 60.0%
! CCCTCTGGCTCCCGGAGAAA+AGG - chr7_2:29576653-29576672 Msa1055360:intron 65.0%
! CCCTTTTCTCCGGGAGCCAG+AGG + chr7_2:29576657-29576676 None:intergenic 65.0%
GCTCCCGGAGAAAAGGGCTC+TGG - chr7_2:29576660-29576679 Msa1055360:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 29574831 29577661 29574831 ID=Msa1055360;Name=Msa1055360
chr7_2 mRNA 29574831 29577661 29574831 ID=Msa1055360-mRNA-1;Parent=Msa1055360;Name=Msa1055360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=191|1|1|1|0.5|0.33|3|900|270
chr7_2 exon 29574831 29575443 29574831 ID=Msa1055360-mRNA-1:exon:6082;Parent=Msa1055360-mRNA-1
chr7_2 exon 29575788 29576392 29575788 ID=Msa1055360-mRNA-1:exon:6081;Parent=Msa1055360-mRNA-1
chr7_2 exon 29576976 29577661 29576976 ID=Msa1055360-mRNA-1:exon:6080;Parent=Msa1055360-mRNA-1
chr7_2 five_prime_UTR 29577471 29577661 29577471 ID=Msa1055360-mRNA-1:five_prime_utr;Parent=Msa1055360-mRNA-1
chr7_2 CDS 29576976 29577470 29576976 ID=Msa1055360-mRNA-1:cds;Parent=Msa1055360-mRNA-1
chr7_2 CDS 29576075 29576392 29576075 ID=Msa1055360-mRNA-1:cds;Parent=Msa1055360-mRNA-1
chr7_2 three_prime_UTR 29575788 29576074 29575788 ID=Msa1055360-mRNA-1:three_prime_utr;Parent=Msa1055360-mRNA-1
chr7_2 three_prime_UTR 29574831 29575443 29574831 ID=Msa1055360-mRNA-1:three_prime_utr;Parent=Msa1055360-mRNA-1
Gene Sequence

>Msa1055360

ATGCAAACCAATCTACATGCCATCTACACACCTCATATCAAAATTTCAACCAAAATAGTTTGCACATTAAATGAAAACAACCAAACCAATCAACAATCTTCAGTTGGCAAAATTAAACGTTTTGTTCTTACACAAGAAGGTAGAACCAAATTGAACCTTATCCAAGATAAAGAGTTTTATGCATATCCACGCCTTGTGACTCATGTTGATGATGGATTCATTTCAACACTAACAAATCTTTACAGAGAAAGGTTGAGACCTGACATGGAGATTCTTGATCTCATGAGTTCTTGGGTTAGTCATCTACCAAATGATGTAAAATACAAAAGAGTGGCAGGGCATGGGATGAATGGACAAGAACTTGCAAAGAATCCAAGGTTGGATTACTTTGTCATAAAGGATCTTAACAAAGATCAACAGTTTGAATTTGAGAGTTGCACTTTTGATGCAGTTTTGTGTACTGTTAGTGTGCAGTATCTCCAACAACCAGAGAAGGTATTTGCAGAGGTGTTTAGGTTGCTAAAACCAGGAGGGGTGTTCATAGTGAGTTTTAGCAACAGAATGTTTTATGAGAAAGCCATAAGTGCATGGAGAGAAGGGACTACTTATAGTAGGGTGCGACTTGTGGTTCAGTACTTCCAATCAGTAGAAGGTTTCACAGAGGCAGAGGTGGTTAGAAAACTTCCAACTACCATTGATGACAAATCACCACTACTGAGCACGGTCATGAAGCTCTTTGGATTGTTTTCAGCGTCAGATCCCTTTTATGCAGTTATTGCTTATAGGAATTTTAAACCAATACATGATGATTAA

Protein sequence

>Msa1055360

MQTNLHAIYTPHIKISTKIVCTLNENNQTNQQSSVGKIKRFVLTQEGRTKLNLIQDKEFYAYPRLVTHVDDGFISTLTNLYRERLRPDMEILDLMSSWVSHLPNDVKYKRVAGHGMNGQELAKNPRLDYFVIKDLNKDQQFEFESCTFDAVLCTVSVQYLQQPEKVFAEVFRLLKPGGVFIVSFSNRMFYEKAISAWREGTTYSRVRLVVQYFQSVEGFTEAEVVRKLPTTIDDKSPLLSTVMKLFGLFSASDPFYAVIAYRNFKPIHDD*