AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054760 MtrunA17_Chr1g0150061 97.881 236 5 0 1 236 1 236 7.53e-171 469
Msa0054760 MtrunA17_Chr8g0386721 72.289 166 46 0 71 236 2 167 1.09e-86 254
Msa0054760 MtrunA17_Chr8g0391921 66.667 162 54 0 75 236 63 224 6.47e-79 236
Msa0054760 MtrunA17_Chr7g0259611 62.424 165 62 0 71 235 4 168 4.52e-76 227
Msa0054760 MtrunA17_Chr8g0386731 63.750 160 58 0 77 236 12 171 3.01e-73 220
Msa0054760 MtrunA17_Chr1g0185791 53.659 164 75 1 72 234 5 168 2.47e-63 195
Msa0054760 MtrunA17_Chr5g0397561 56.250 160 69 1 77 235 10 169 8.57e-61 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054760 AT2G25080.1 69.406 219 66 1 18 236 19 236 1.88e-108 312
Msa0054760 AT4G31870.1 67.532 231 74 1 6 236 4 233 5.99e-106 306
Msa0054760 AT4G11600.1 74.214 159 41 0 77 235 71 229 3.26e-85 253
Msa0054760 AT2G43350.2 68.553 159 50 0 78 236 47 205 5.96e-78 234
Msa0054760 AT2G43350.1 68.553 159 50 0 78 236 47 205 5.96e-78 234
Msa0054760 AT2G31570.1 67.296 159 52 0 77 235 7 165 3.80e-77 230
Msa0054760 AT1G63460.1 60.759 158 62 0 77 234 7 164 8.34e-73 219
Msa0054760 AT3G63080.1 61.146 157 61 0 79 235 14 170 2.55e-68 208
Msa0054760 AT2G48150.1 56.790 162 70 0 73 234 6 167 3.24e-66 202
Msa0054760 AT2G48150.2 58.865 141 58 0 94 234 1 141 2.90e-59 184
Msa0054760 AT4G31870.2 49.618 131 65 1 6 136 4 133 1.42e-30 112

Find 50 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGAACCTTATCGAAAAT+TGG 0.207954 1_2:-9477379 None:intergenic
AACTGTACTTCCAAAATTAT+TGG 0.223112 1_2:-9474291 None:intergenic
GTAGAACAGGTTGATGTAAA+TGG 0.227839 1_2:+9477464 Msa0054760:intron
CTGAAATTTAACGAAAATTC+TGG 0.260514 1_2:-9478146 None:intergenic
GCTTTCCCTTGCAATCAATT+TGG 0.263308 1_2:+9477289 Msa0054760:CDS
CTTGACAGTAAAATCATAAA+TGG 0.263502 1_2:-9474612 None:intergenic
ACAGTCTCTGCCACACAAAA+TGG 0.301072 1_2:+9474361 Msa0054760:intron
TACTTGCTGCGTGAAAATTT+AGG 0.333296 1_2:+9477948 Msa0054760:exon
AAAGGGAAAGTGTTCATATA+TGG 0.355645 1_2:+9478123 Msa0054760:three_prime_UTR
TTCACGCAGCAAGTAACTTC+TGG 0.359704 1_2:-9477940 None:intergenic
TCTATAGTGTAGTAGTGAAT+AGG 0.364533 1_2:-9478068 None:intergenic
CAGTTTCTGAAGTCAAGTTC+TGG 0.365037 1_2:+9477509 Msa0054760:CDS
GACTTCAGAAACTGGTATAC+TGG 0.374167 1_2:-9477500 None:intergenic
GTTATATGTGCGATGCTTGA+TGG 0.409106 1_2:-9474315 None:intergenic
TTAATTTCTTCATTTGATCC+AGG 0.410664 1_2:-9477322 None:intergenic
TGGTATACTGGAGCAGTAAA+TGG 0.415807 1_2:-9477488 None:intergenic
TTAGACTTCAAAACAGCCTT+AGG 0.415949 1_2:-9474551 None:intergenic
TACTATGCTTTATCACTAAA+GGG 0.419009 1_2:+9478106 Msa0054760:three_prime_UTR
CAGAACTTGACTTCAGAAAC+TGG 0.419102 1_2:-9477508 None:intergenic
GTACTATGCTTTATCACTAA+AGG 0.423758 1_2:+9478105 Msa0054760:three_prime_UTR
ATTTATATTCAAAAGTTTGA+AGG 0.429700 1_2:-9478201 None:intergenic
TAACATACCTCAATTTGAAA+AGG 0.452584 1_2:-9477626 None:intergenic
TTGCAATCAATTTGGCATGC+AGG 0.453941 1_2:+9477297 Msa0054760:CDS
ATTTGAAAAGGAGAGGTTGT+TGG 0.461689 1_2:-9477614 None:intergenic
CAATTTGGCATGCAGGAGCC+TGG 0.464234 1_2:+9477304 Msa0054760:CDS
ACAAAAGGCAAAGAAATTGA+AGG 0.466437 1_2:-9474455 None:intergenic
TTCCCCTTGAATTTGCTAAG+AGG 0.483787 1_2:-9475395 None:intergenic
TGTGCCTCTTAGCAAATTCA+AGG 0.492645 1_2:+9475391 Msa0054760:CDS
GCCACACAAAATGGTTTCCA+TGG 0.508212 1_2:+9474370 Msa0054760:exon
TGAAAAGGAGAGGTTGTTGG+TGG 0.511106 1_2:-9477611 None:intergenic
AAGAGGTGTGAAGAAGGTTG+TGG 0.519675 1_2:-9474399 None:intergenic
TGCATGCCAAATTGATTGCA+AGG 0.530005 1_2:-9477295 None:intergenic
TTAAGAAATTTGCTTGCACT+AGG 0.553262 1_2:+9477341 Msa0054760:CDS
ATCAGAGGCATGCTTGTACA+AGG 0.558429 1_2:+9477981 Msa0054760:three_prime_UTR
GAAAAGGAGAGGTTGTTGGT+GGG 0.561717 1_2:-9477610 None:intergenic
TTAGGAAAATCGAAAGAGGT+TGG 0.563898 1_2:-9474533 None:intergenic
TACCTCAATTTGAAAAGGAG+AGG 0.573842 1_2:-9477621 None:intergenic
GAAGGTTGTGGAAGAAGCCA+TGG 0.574467 1_2:-9474387 None:intergenic
TTCTGAAGTCAAGTTCTGGA+GGG 0.576508 1_2:+9477513 Msa0054760:CDS
TCTTAGCAAATTCAAGGGGA+AGG 0.578922 1_2:+9475397 Msa0054760:CDS
TTGTCAATGTTGCTTCAAGA+TGG 0.580677 1_2:+9475429 Msa0054760:CDS
TTTCTGAAGTCAAGTTCTGG+AGG 0.598538 1_2:+9477512 Msa0054760:CDS
GTGCCTCTTAGCAAATTCAA+GGG 0.601868 1_2:+9475392 Msa0054760:CDS
AGCCTTAGGAAAATCGAAAG+AGG 0.607348 1_2:-9474537 None:intergenic
GCATGCCAAATTGATTGCAA+GGG 0.608481 1_2:-9477294 None:intergenic
ATTGTGAAGAGGTGTGAAGA+AGG 0.611184 1_2:-9474405 None:intergenic
GCTTGATTGAAATTGTGAAG+AGG 0.664846 1_2:-9474416 None:intergenic
TGCCTCTTAGCAAATTCAAG+GGG 0.679239 1_2:+9475393 Msa0054760:CDS
TTAGGAATGAGCAAAATCAG+AGG 0.683872 1_2:+9477966 Msa0054760:three_prime_UTR
TTTGACATCATCAAACTACA+CGG 0.712985 1_2:+9476066 Msa0054760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAAAATAGAAG+GGG + chr1_2:9475900-9475919 Msa0054760:intron 10.0%
!!! ATTTCTTATATTTTTTATCA+TGG + chr1_2:9476159-9476178 Msa0054760:intron 10.0%
!!! GATAATTTGTTAATATGTAT+AGG + chr1_2:9474699-9474718 Msa0054760:intron 15.0%
!!! TTGTTTTTGTTTTTGTTTTT+TGG + chr1_2:9475042-9475061 Msa0054760:intron 15.0%
!!! TTTTCTTCAATTCTAAAAAT+AGG - chr1_2:9475318-9475337 None:intergenic 15.0%
!! ATTTAAAAGATGTTATTATG+TGG + chr1_2:9475346-9475365 Msa0054760:intron 15.0%
!! ATTACAAATGAAAAAAAGAA+GGG - chr1_2:9475488-9475507 None:intergenic 15.0%
!!! TATGAAAATTTTAAAGACAA+AGG + chr1_2:9476103-9476122 Msa0054760:CDS 15.0%
!! AACATAAAAAGTGAAAAATT+AGG + chr1_2:9476830-9476849 Msa0054760:intron 15.0%
!!! GATTAAGCAAAAAATATTTT+AGG - chr1_2:9477884-9477903 None:intergenic 15.0%
!! ATTTATATTCAAAAGTTTGA+AGG - chr1_2:9478204-9478223 None:intergenic 15.0%
!! AACAATTTATTTGTAGCTTA+TGG + chr1_2:9474735-9474754 Msa0054760:intron 20.0%
!! CATTACAAATGAAAAAAAGA+AGG - chr1_2:9475489-9475508 None:intergenic 20.0%
!!! TTTTTTCATTTGTAATGTTC+AGG + chr1_2:9475492-9475511 Msa0054760:intron 20.0%
!!! AAACAAATAGTTCTAAATTG+CGG + chr1_2:9475558-9475577 Msa0054760:intron 20.0%
!!! AATTTTGTATAACAAACTAG+AGG - chr1_2:9475791-9475810 None:intergenic 20.0%
!! TTGTTATACAAAATTAGAGT+CGG + chr1_2:9475796-9475815 Msa0054760:intron 20.0%
!!! ATATTTTTTATCATGGCTAT+TGG + chr1_2:9476166-9476185 Msa0054760:intron 20.0%
!!! TTATTCTGAATATCTACTTT+TGG + chr1_2:9476221-9476240 Msa0054760:intron 20.0%
!!! AAACACATGCATTTTATTTT+AGG - chr1_2:9476651-9476670 None:intergenic 20.0%
!! ATAATATCCTAAATTGCAAA+CGG - chr1_2:9476729-9476748 None:intergenic 20.0%
!! TAAAAAGTGAAAAATTAGGT+AGG + chr1_2:9476834-9476853 Msa0054760:intron 20.0%
!! AAAAAGTGAAAAATTAGGTA+GGG + chr1_2:9476835-9476854 Msa0054760:intron 20.0%
!!! CTTGTTTTGTTTTGTAATTT+GGG + chr1_2:9476902-9476921 Msa0054760:intron 20.0%
!!! TTGTTTTGTTTTGTAATTTG+GGG + chr1_2:9476903-9476922 Msa0054760:intron 20.0%
!! CAATGAATTATTAACTAGTT+AGG + chr1_2:9477695-9477714 Msa0054760:intron 20.0%
!! GTGGATAATGCAATATTTTT+GGG - chr1_2:9474262-9474281 None:intergenic 25.0%
!! TGTGGATAATGCAATATTTT+TGG - chr1_2:9474263-9474282 None:intergenic 25.0%
!!! AAATTATTGGTGTGTTTTTG+TGG - chr1_2:9474281-9474300 None:intergenic 25.0%
!! CAAAAACACACCAATAATTT+TGG + chr1_2:9474281-9474300 Msa0054760:five_prime_UTR 25.0%
! AACTGTACTTCCAAAATTAT+TGG - chr1_2:9474294-9474313 None:intergenic 25.0%
!!! AAATCACCTTTTTTTCAACA+TGG + chr1_2:9474500-9474519 Msa0054760:CDS 25.0%
! CTTGACAGTAAAATCATAAA+TGG - chr1_2:9474615-9474634 None:intergenic 25.0%
!! CATTTATGATTTTACTGTCA+AGG + chr1_2:9474613-9474632 Msa0054760:CDS 25.0%
!!! TAATATGTATAGGTCTTGTT+TGG + chr1_2:9474709-9474728 Msa0054760:intron 25.0%
! TATTTGTAGCTTATGGTATA+AGG + chr1_2:9474742-9474761 Msa0054760:intron 25.0%
! ATTTGTAGCTTATGGTATAA+GGG + chr1_2:9474743-9474762 Msa0054760:intron 25.0%
!!! TGTTGTTTTCATAAGCTATT+TGG + chr1_2:9474829-9474848 Msa0054760:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+GGG + chr1_2:9474830-9474849 Msa0054760:intron 25.0%
! CGTAAGTTGTTTATTATGAT+AGG + chr1_2:9474895-9474914 Msa0054760:intron 25.0%
!! GTTTATTATGATAGGTTTTG+TGG + chr1_2:9474903-9474922 Msa0054760:intron 25.0%
! AAAAAAATAGCCAATCCAAA+CGG - chr1_2:9475023-9475042 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr1_2:9475102-9475121 Msa0054760:intron 25.0%
!!! TATTGACTTTATATTTGCGT+TGG + chr1_2:9475462-9475481 Msa0054760:intron 25.0%
! TATTCAAGAACAGTAAAACA+GGG - chr1_2:9475670-9475689 None:intergenic 25.0%
! ATATTCAAGAACAGTAAAAC+AGG - chr1_2:9475671-9475690 None:intergenic 25.0%
! AATTTGATGTCTTACATTAG+AGG - chr1_2:9475751-9475770 None:intergenic 25.0%
!! ATTGATTGATTTCCTTTGAA+TGG + chr1_2:9476037-9476056 Msa0054760:intron 25.0%
!! GAAATCTTTATGTTTTGTGT+TGG + chr1_2:9476243-9476262 Msa0054760:intron 25.0%
!!! GTTATTGGTATTTTTAGATG+TGG + chr1_2:9476325-9476344 Msa0054760:intron 25.0%
! TATTCGAAACATTTCTCTAT+AGG + chr1_2:9476423-9476442 Msa0054760:intron 25.0%
! TTTCCATATAAAGATACGTT+TGG - chr1_2:9476449-9476468 None:intergenic 25.0%
! TCAAAATGTGTTTGTCAATT+GGG - chr1_2:9476544-9476563 None:intergenic 25.0%
! TTCAAAATGTGTTTGTCAAT+TGG - chr1_2:9476545-9476564 None:intergenic 25.0%
!!! ATAAAATGCATGTGTTTTTG+TGG + chr1_2:9476654-9476673 Msa0054760:intron 25.0%
!!! TAAAATGCATGTGTTTTTGT+GGG + chr1_2:9476655-9476674 Msa0054760:intron 25.0%
! CCAAATTACAAAACAAAACA+AGG - chr1_2:9476904-9476923 None:intergenic 25.0%
!!! CCTTGTTTTGTTTTGTAATT+TGG + chr1_2:9476901-9476920 Msa0054760:intron 25.0%
!!! TTGCATTTTGATTACAATGT+TGG + chr1_2:9477018-9477037 Msa0054760:intron 25.0%
! ACAAGGAAATTAAAAATGTG+TGG - chr1_2:9477240-9477259 None:intergenic 25.0%
! TTAATTTCTTCATTTGATCC+AGG - chr1_2:9477325-9477344 None:intergenic 25.0%
!! AGAATTTCCAATTTTCGATA+AGG + chr1_2:9477372-9477391 Msa0054760:CDS 25.0%
! TGTAATCTATTCTTAAGTAC+TGG - chr1_2:9477417-9477436 None:intergenic 25.0%
! AAATTCTTGGTCGATAAAAA+TGG + chr1_2:9477569-9477588 Msa0054760:CDS 25.0%
! TAACATACCTCAATTTGAAA+AGG - chr1_2:9477629-9477648 None:intergenic 25.0%
!!! AGTCTAGCTTCTAATTTTTA+TGG + chr1_2:9477669-9477688 Msa0054760:intron 25.0%
! AAATTACATTGACATACTTG+AGG - chr1_2:9477726-9477745 None:intergenic 25.0%
!! AGTATGTCAATGTAATTTTC+CGG + chr1_2:9477728-9477747 Msa0054760:intron 25.0%
!! AATTTTCCGGAAAAAATTGA+AGG + chr1_2:9477741-9477760 Msa0054760:intron 25.0%
! TTAAGCTGTATTTGATTACA+TGG + chr1_2:9477837-9477856 Msa0054760:intron 25.0%
! TAAGCTGTATTTGATTACAT+GGG + chr1_2:9477838-9477857 Msa0054760:intron 25.0%
! TACTATGCTTTATCACTAAA+GGG + chr1_2:9478106-9478125 Msa0054760:three_prime_UTR 25.0%
! CTGAAATTTAACGAAAATTC+TGG - chr1_2:9478149-9478168 None:intergenic 25.0%
ACAAAAGGCAAAGAAATTGA+AGG - chr1_2:9474458-9474477 None:intergenic 30.0%
! GCAATTGAGGATTTTACAAA+AGG - chr1_2:9474473-9474492 None:intergenic 30.0%
!! TGATTTTGAAGAAGCAATTG+AGG - chr1_2:9474486-9474505 None:intergenic 30.0%
GAAAAGCCATGTTGAAAAAA+AGG - chr1_2:9474509-9474528 None:intergenic 30.0%
TAAGGGTTTATCATGATAAG+TGG + chr1_2:9474760-9474779 Msa0054760:intron 30.0%
ATGATAAGTGGTTATGAATG+AGG + chr1_2:9474772-9474791 Msa0054760:intron 30.0%
! TGAATGAGGTGTTTATACAA+CGG + chr1_2:9474786-9474805 Msa0054760:intron 30.0%
AAAAAATAGCCAATCCAAAC+GGG - chr1_2:9475022-9475041 None:intergenic 30.0%
!!! CACATAGTTTTGTTGAAGAA+GGG + chr1_2:9475290-9475309 Msa0054760:intron 30.0%
TTTCATTTGTAATGTTCAGG+AGG + chr1_2:9475495-9475514 Msa0054760:intron 30.0%
TTCATTTGTAATGTTCAGGA+GGG + chr1_2:9475496-9475515 Msa0054760:intron 30.0%
! TTTCTCCTGCTATTTGAAAA+GGG + chr1_2:9475962-9475981 Msa0054760:intron 30.0%
GAAAGTTATGTCAAAGTTTC+TGG + chr1_2:9476000-9476019 Msa0054760:intron 30.0%
TTTGACATCATCAAACTACA+CGG + chr1_2:9476066-9476085 Msa0054760:CDS 30.0%
TAGAGAAATGTTTCGAATAG+AGG - chr1_2:9476422-9476441 None:intergenic 30.0%
ATCTTTATATGGAAAGCTGT+TGG + chr1_2:9476454-9476473 Msa0054760:intron 30.0%
AAAATGTGTTTGTCAATTGG+GGG - chr1_2:9476542-9476561 None:intergenic 30.0%
CAAAATGTGTTTGTCAATTG+GGG - chr1_2:9476543-9476562 None:intergenic 30.0%
! AACACATTTTGAATCTTGAC+TGG + chr1_2:9476552-9476571 Msa0054760:intron 30.0%
!! ATAGGATTAGCTTCTGTATA+AGG + chr1_2:9476611-9476630 Msa0054760:intron 30.0%
!!! ATTTTATTTTAGGTTTCCCC+AGG - chr1_2:9476641-9476660 None:intergenic 30.0%
!!! TTTTTGGGCAGTTACTTTTA+GGG - chr1_2:9476989-9477008 None:intergenic 30.0%
GTAAGGATAGATAGACTATA+CGG + chr1_2:9477076-9477095 Msa0054760:intron 30.0%
TAAGGATAGATAGACTATAC+GGG + chr1_2:9477077-9477096 Msa0054760:intron 30.0%
!! TTGTTGTTTCTCTTTGAACA+TGG + chr1_2:9477176-9477195 Msa0054760:intron 30.0%
! TTAAGAAATTTGCTTGCACT+AGG + chr1_2:9477341-9477360 Msa0054760:CDS 30.0%
TATCGAACCTTATCGAAAAT+TGG - chr1_2:9477382-9477401 None:intergenic 30.0%
TTCTACAAAACTTCAGTACT+TGG - chr1_2:9477450-9477469 None:intergenic 30.0%
!! GTGGAATTTTGAGAAATTCT+TGG + chr1_2:9477556-9477575 Msa0054760:CDS 30.0%
! CTAGCTTCTAATTTTTATGG+TGG + chr1_2:9477672-9477691 Msa0054760:intron 30.0%
TCTATAGTGTAGTAGTGAAT+AGG - chr1_2:9478071-9478090 None:intergenic 30.0%
GTACTATGCTTTATCACTAA+AGG + chr1_2:9478105-9478124 Msa0054760:three_prime_UTR 30.0%
!! AAAGGGAAAGTGTTCATATA+TGG + chr1_2:9478123-9478142 Msa0054760:three_prime_UTR 30.0%
GCTTGATTGAAATTGTGAAG+AGG - chr1_2:9474419-9474438 None:intergenic 35.0%
TTAGGAAAATCGAAAGAGGT+TGG - chr1_2:9474536-9474555 None:intergenic 35.0%
! AACCTCTTTCGATTTTCCTA+AGG + chr1_2:9474535-9474554 Msa0054760:CDS 35.0%
TTAGACTTCAAAACAGCCTT+AGG - chr1_2:9474554-9474573 None:intergenic 35.0%
!!! GCACATAGTTTTGTTGAAGA+AGG + chr1_2:9475289-9475308 Msa0054760:intron 35.0%
AAGATGTTATTATGTGGTGC+AGG + chr1_2:9475352-9475371 Msa0054760:intron 35.0%
! TTGTCAATGTTGCTTCAAGA+TGG + chr1_2:9475429-9475448 Msa0054760:CDS 35.0%
GCATACTTAATACCACTCAT+AGG - chr1_2:9475536-9475555 None:intergenic 35.0%
!!! AGTTTTAGAAGTATACGCTG+TGG + chr1_2:9475605-9475624 Msa0054760:intron 35.0%
! CTAAATCGAGAGCATGAATT+TGG + chr1_2:9475842-9475861 Msa0054760:intron 35.0%
GCTCTATTTAAGCATACTTG+AGG + chr1_2:9475926-9475945 Msa0054760:intron 35.0%
! GTTTCTCCTGCTATTTGAAA+AGG + chr1_2:9475961-9475980 Msa0054760:intron 35.0%
! ATTAGCCCTTTTCAAATAGC+AGG - chr1_2:9475970-9475989 None:intergenic 35.0%
! AGACAAAGGTACGTTACTTA+TGG + chr1_2:9476117-9476136 Msa0054760:intron 35.0%
GTTGGATCCTGTATAAGATT+AGG + chr1_2:9476261-9476280 Msa0054760:intron 35.0%
CTTCTCTCCTAATCTTATAC+AGG - chr1_2:9476271-9476290 None:intergenic 35.0%
TGTGAATGAAGTTAACCAAC+TGG + chr1_2:9476364-9476383 Msa0054760:intron 35.0%
GTGAATGAAGTTAACCAACT+GGG + chr1_2:9476365-9476384 Msa0054760:intron 35.0%
AGGCCAAACGTATCTTTATA+TGG + chr1_2:9476443-9476462 Msa0054760:intron 35.0%
!! TGCATGTCCATTTTAACCAA+CGG + chr1_2:9476490-9476509 Msa0054760:intron 35.0%
AAATGTGTTTGTCAATTGGG+GGG - chr1_2:9476541-9476560 None:intergenic 35.0%
TGTCTAATCGTGTCTCAAAT+AGG + chr1_2:9476593-9476612 Msa0054760:intron 35.0%
CTTCTGTATAAGGATATCCT+GGG + chr1_2:9476621-9476640 Msa0054760:intron 35.0%
TTCTGTATAAGGATATCCTG+GGG + chr1_2:9476622-9476641 Msa0054760:intron 35.0%
ATTTCCACCGTTTGCAATTT+AGG + chr1_2:9476719-9476738 Msa0054760:intron 35.0%
ATATCCTAAATTGCAAACGG+TGG - chr1_2:9476726-9476745 None:intergenic 35.0%
TAAATGCCAAACAGAAAGCA+GGG - chr1_2:9476784-9476803 None:intergenic 35.0%
TTAAATGCCAAACAGAAAGC+AGG - chr1_2:9476785-9476804 None:intergenic 35.0%
GCTTTCTGTTTGGCATTTAA+CGG + chr1_2:9476785-9476804 Msa0054760:intron 35.0%
AAGTGAACTAGTGAAGAAGA+TGG + chr1_2:9476862-9476881 Msa0054760:intron 35.0%
!!! TTTTGGGCAGTTACTTTTAG+GGG - chr1_2:9476988-9477007 None:intergenic 35.0%
!!! GTTTTTGGGCAGTTACTTTT+AGG - chr1_2:9476990-9477009 None:intergenic 35.0%
! ATGCAACTATGCACGTTTTT+GGG - chr1_2:9477004-9477023 None:intergenic 35.0%
! AATGCAACTATGCACGTTTT+TGG - chr1_2:9477005-9477024 None:intergenic 35.0%
AGGATAGATAGACTAACGTA+AGG + chr1_2:9477059-9477078 Msa0054760:intron 35.0%
!! GTACTGAAGTTTTGTAGAAC+AGG + chr1_2:9477451-9477470 Msa0054760:intron 35.0%
!! GTAGAACAGGTTGATGTAAA+TGG + chr1_2:9477464-9477483 Msa0054760:intron 35.0%
ATTTGAAAAGGAGAGGTTGT+TGG - chr1_2:9477617-9477636 None:intergenic 35.0%
! AACCTCTCCTTTTCAAATTG+AGG + chr1_2:9477619-9477638 Msa0054760:CDS 35.0%
TACCTCAATTTGAAAAGGAG+AGG - chr1_2:9477624-9477643 None:intergenic 35.0%
! AGCTAGACTTTTGATGTTGT+TGG - chr1_2:9477658-9477677 None:intergenic 35.0%
!!! TCCTCTCCTTCAATTTTTTC+CGG - chr1_2:9477750-9477769 None:intergenic 35.0%
CTTCTGCAAAAATGTGAAAC+GGG - chr1_2:9477915-9477934 None:intergenic 35.0%
CCTTCTGCAAAAATGTGAAA+CGG - chr1_2:9477916-9477935 None:intergenic 35.0%
! TACTTGCTGCGTGAAAATTT+AGG + chr1_2:9477948-9477967 Msa0054760:exon 35.0%
TTAGGAATGAGCAAAATCAG+AGG + chr1_2:9477966-9477985 Msa0054760:three_prime_UTR 35.0%
GTTATATGTGCGATGCTTGA+TGG - chr1_2:9474318-9474337 None:intergenic 40.0%
! ATTGTGAAGAGGTGTGAAGA+AGG - chr1_2:9474408-9474427 None:intergenic 40.0%
AGCCTTAGGAAAATCGAAAG+AGG - chr1_2:9474540-9474559 None:intergenic 40.0%
!! GCTGTTTTCGTAAGCTATCT+TGG + chr1_2:9474987-9475006 Msa0054760:intron 40.0%
GTAAGCTATCTTGGAGAACA+GGG + chr1_2:9474996-9475015 Msa0054760:intron 40.0%
TAAACATTGCGAGACTGTCT+GGG - chr1_2:9475232-9475251 None:intergenic 40.0%
ATAAACATTGCGAGACTGTC+TGG - chr1_2:9475233-9475252 None:intergenic 40.0%
TGCAGATAAGCCAATCGAAA+CGG + chr1_2:9475266-9475285 Msa0054760:intron 40.0%
TGTGCCTCTTAGCAAATTCA+AGG + chr1_2:9475391-9475410 Msa0054760:CDS 40.0%
GTGCCTCTTAGCAAATTCAA+GGG + chr1_2:9475392-9475411 Msa0054760:CDS 40.0%
TGCCTCTTAGCAAATTCAAG+GGG + chr1_2:9475393-9475412 Msa0054760:CDS 40.0%
!! TTCCCCTTGAATTTGCTAAG+AGG - chr1_2:9475398-9475417 None:intergenic 40.0%
TCTTAGCAAATTCAAGGGGA+AGG + chr1_2:9475397-9475416 Msa0054760:CDS 40.0%
TGTAATGTTCAGGAGGGATT+TGG + chr1_2:9475502-9475521 Msa0054760:intron 40.0%
TTAGAGGAGTGAGAAAGTGA+TGG - chr1_2:9475735-9475754 None:intergenic 40.0%
! TAGAGGTGTGTGTAACTAAG+GGG - chr1_2:9475774-9475793 None:intergenic 40.0%
! CTAGAGGTGTGTGTAACTAA+GGG - chr1_2:9475775-9475794 None:intergenic 40.0%
! ACTAGAGGTGTGTGTAACTA+AGG - chr1_2:9475776-9475795 None:intergenic 40.0%
CAAAATTAGAGTCGGTGACT+TGG + chr1_2:9475804-9475823 Msa0054760:intron 40.0%
! TTTGGTGCATCCAACAAGTT+AGG + chr1_2:9475860-9475879 Msa0054760:intron 40.0%
TTGGTGCATCCAACAAGTTA+GGG + chr1_2:9475861-9475880 Msa0054760:intron 40.0%
TGATTTCCTTTGAATGGCAG+CGG + chr1_2:9476043-9476062 Msa0054760:intron 40.0%
ATTGGTCACTACCTGTTATC+TGG + chr1_2:9476184-9476203 Msa0054760:intron 40.0%
AGCTACAAGATCCAGATAAC+AGG - chr1_2:9476198-9476217 None:intergenic 40.0%
CTGAGTTTCAATAGGAAGGA+AGG - chr1_2:9476299-9476318 None:intergenic 40.0%
CTTCCTTCCTATTGAAACTC+AGG + chr1_2:9476297-9476316 Msa0054760:intron 40.0%
ATGCCTGAGTTTCAATAGGA+AGG - chr1_2:9476303-9476322 None:intergenic 40.0%
TCCTATTGAAACTCAGGCAT+AGG + chr1_2:9476303-9476322 Msa0054760:intron 40.0%
ACCTATGCCTGAGTTTCAAT+AGG - chr1_2:9476307-9476326 None:intergenic 40.0%
GAAACTCAGGCATAGGTTAT+TGG + chr1_2:9476310-9476329 Msa0054760:intron 40.0%
CCATATCATCATATCCCAGT+TGG - chr1_2:9476382-9476401 None:intergenic 40.0%
CCAACTGGGATATGATGATA+TGG + chr1_2:9476379-9476398 Msa0054760:intron 40.0%
!! GCATGTCCATTTTAACCAAC+GGG + chr1_2:9476491-9476510 Msa0054760:intron 40.0%
!! CATGTCCATTTTAACCAACG+GGG + chr1_2:9476492-9476511 Msa0054760:intron 40.0%
GCTTCTGTATAAGGATATCC+TGG + chr1_2:9476620-9476639 Msa0054760:intron 40.0%
CGGTGGAAATAAAGCAAGAT+AGG - chr1_2:9476709-9476728 None:intergenic 40.0%
AAATGCCAAACAGAAAGCAG+GGG - chr1_2:9476783-9476802 None:intergenic 40.0%
! ATTTAACGGTGTGCTTGTTG+TGG + chr1_2:9476799-9476818 Msa0054760:intron 40.0%
!!! TTTGGGCAGTTACTTTTAGG+GGG - chr1_2:9476987-9477006 None:intergenic 40.0%
! GGTGCTGAAGAATTTGCAAA+AGG + chr1_2:9477039-9477058 Msa0054760:intron 40.0%
TCGCTTTCGAATGTATCGTT+TGG - chr1_2:9477140-9477159 None:intergenic 40.0%
! TCCTTGTGCATTTTCTTTCC+AGG + chr1_2:9477253-9477272 Msa0054760:intron 40.0%
ACCTGGAAAGAAAATGCACA+AGG - chr1_2:9477257-9477276 None:intergenic 40.0%
! GTGCATTTTCTTTCCAGGTT+TGG + chr1_2:9477258-9477277 Msa0054760:intron 40.0%
AAAGCTAGAATCTCCAAACC+TGG - chr1_2:9477274-9477293 None:intergenic 40.0%
GCTTTCCCTTGCAATCAATT+TGG + chr1_2:9477289-9477308 Msa0054760:CDS 40.0%
GCATGCCAAATTGATTGCAA+GGG - chr1_2:9477297-9477316 None:intergenic 40.0%
TGCATGCCAAATTGATTGCA+AGG - chr1_2:9477298-9477317 None:intergenic 40.0%
TTGCAATCAATTTGGCATGC+AGG + chr1_2:9477297-9477316 Msa0054760:CDS 40.0%
TGGTATACTGGAGCAGTAAA+TGG - chr1_2:9477491-9477510 None:intergenic 40.0%
GACTTCAGAAACTGGTATAC+TGG - chr1_2:9477503-9477522 None:intergenic 40.0%
CAGAACTTGACTTCAGAAAC+TGG - chr1_2:9477511-9477530 None:intergenic 40.0%
!! CAGTTTCTGAAGTCAAGTTC+TGG + chr1_2:9477509-9477528 Msa0054760:CDS 40.0%
!! TTTCTGAAGTCAAGTTCTGG+AGG + chr1_2:9477512-9477531 Msa0054760:CDS 40.0%
!! TTCTGAAGTCAAGTTCTGGA+GGG + chr1_2:9477513-9477532 Msa0054760:CDS 40.0%
!!! TCAAGTTCTGGAGGGTTTTT+CGG + chr1_2:9477521-9477540 Msa0054760:CDS 40.0%
! TTTTCGGTGATCTTGTCAAG+TGG + chr1_2:9477537-9477556 Msa0054760:CDS 40.0%
TCCGGAAAAAATTGAAGGAG+AGG + chr1_2:9477746-9477765 Msa0054760:intron 40.0%
GGAGAGGAATATATCTTCAG+TGG + chr1_2:9477762-9477781 Msa0054760:intron 40.0%
! CCGTTTCACATTTTTGCAGA+AGG + chr1_2:9477913-9477932 Msa0054760:intron 40.0%
ACAGTCTCTGCCACACAAAA+TGG + chr1_2:9474361-9474380 Msa0054760:intron 45.0%
GCCACACAAAATGGTTTCCA+TGG + chr1_2:9474370-9474389 Msa0054760:exon 45.0%
! GCCATGGAAACCATTTTGTG+TGG - chr1_2:9474374-9474393 None:intergenic 45.0%
! AAGAGGTGTGAAGAAGGTTG+TGG - chr1_2:9474402-9474421 None:intergenic 45.0%
CGTAAGCTATCTTGGAGAAC+AGG + chr1_2:9474995-9475014 Msa0054760:intron 45.0%
GCTTATCTGCACTCATCTAC+TGG - chr1_2:9475257-9475276 None:intergenic 45.0%
GCAGATAAGCCAATCGAAAC+GGG + chr1_2:9475267-9475286 Msa0054760:intron 45.0%
AACTATGTGCCCGTTTCGAT+TGG - chr1_2:9475279-9475298 None:intergenic 45.0%
TTGGACTCACTTCCTATGAG+TGG + chr1_2:9475521-9475540 Msa0054760:intron 45.0%
TGGTATCACAACCACAGTTG+TGG + chr1_2:9475625-9475644 Msa0054760:intron 45.0%
AGGGATAAATGCGACAGATG+CGG - chr1_2:9475651-9475670 None:intergenic 45.0%
! GACTCAACACCCTAACTTGT+TGG - chr1_2:9475873-9475892 None:intergenic 45.0%
! CTCAACCCCGTTGGTTAAAA+TGG - chr1_2:9476500-9476519 None:intergenic 45.0%
TCATTCCCCTGCTTTCTGTT+TGG + chr1_2:9476775-9476794 Msa0054760:intron 45.0%
!!! TTGGGCAGTTACTTTTAGGG+GGG - chr1_2:9476986-9477005 None:intergenic 45.0%
GAAAAGGAGAGGTTGTTGGT+GGG - chr1_2:9477613-9477632 None:intergenic 45.0%
TGAAAAGGAGAGGTTGTTGG+TGG - chr1_2:9477614-9477633 None:intergenic 45.0%
TTCACGCAGCAAGTAACTTC+TGG - chr1_2:9477943-9477962 None:intergenic 45.0%
! ATCAGAGGCATGCTTGTACA+AGG + chr1_2:9477981-9478000 Msa0054760:three_prime_UTR 45.0%
!! TTAAAAAAATAAAAAATAGA+AGG + chr1_2:9475898-9475917 Msa0054760:intron 5.0%
!! TAAAAAAATAAAAAATAGAA+GGG + chr1_2:9475899-9475918 Msa0054760:intron 5.0%
GAAGGTTGTGGAAGAAGCCA+TGG - chr1_2:9474390-9474409 None:intergenic 50.0%
GTCAAACCGCTGCCATTCAA+AGG - chr1_2:9476052-9476071 None:intergenic 50.0%
GAACATGAGTGAGCTCTTGC+TGG + chr1_2:9477099-9477118 Msa0054760:intron 50.0%
AGAACAGGGCCCGTTTGGAT+TGG + chr1_2:9475010-9475029 Msa0054760:intron 55.0%
TCTGCTAGACTCAACCCCGT+TGG - chr1_2:9476509-9476528 None:intergenic 55.0%
!! CGGTGTGCTTGTTGTGGAGA+TGG + chr1_2:9476805-9476824 Msa0054760:intron 55.0%
CAATTTGGCATGCAGGAGCC+TGG + chr1_2:9477304-9477323 Msa0054760:CDS 55.0%
CTTGGAGAACAGGGCCCGTT+TGG + chr1_2:9475005-9475024 Msa0054760:intron 60.0%
GACAGATGCGGCCACAACTG+TGG - chr1_2:9475639-9475658 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9474253 9478273 9474253 ID=Msa0054760;Name=Msa0054760
chr1_2 mRNA 9474253 9478273 9474253 ID=Msa0054760-mRNA-1;Parent=Msa0054760;Name=Msa0054760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=93|1|1|1|0.83|0.71|7|312|236
chr1_2 exon 9474253 9474330 9474253 ID=Msa0054760-mRNA-1:exon:3445;Parent=Msa0054760-mRNA-1
chr1_2 exon 9474365 9474634 9474365 ID=Msa0054760-mRNA-1:exon:3446;Parent=Msa0054760-mRNA-1
chr1_2 exon 9475374 9475450 9475374 ID=Msa0054760-mRNA-1:exon:3447;Parent=Msa0054760-mRNA-1
chr1_2 exon 9476063 9476124 9476063 ID=Msa0054760-mRNA-1:exon:3448;Parent=Msa0054760-mRNA-1
chr1_2 exon 9477275 9477393 9477275 ID=Msa0054760-mRNA-1:exon:3449;Parent=Msa0054760-mRNA-1
chr1_2 exon 9477473 9477640 9477473 ID=Msa0054760-mRNA-1:exon:3450;Parent=Msa0054760-mRNA-1
chr1_2 exon 9477932 9478273 9477932 ID=Msa0054760-mRNA-1:exon:3451;Parent=Msa0054760-mRNA-1
chr1_2 five_prime_UTR 9474253 9474330 9474253 ID=Msa0054760-mRNA-1:five_prime_utr;Parent=Msa0054760-mRNA-1
chr1_2 five_prime_UTR 9474365 9474379 9474365 ID=Msa0054760-mRNA-1:five_prime_utr;Parent=Msa0054760-mRNA-1
chr1_2 CDS 9474380 9474634 9474380 ID=Msa0054760-mRNA-1:cds;Parent=Msa0054760-mRNA-1
chr1_2 CDS 9475374 9475450 9475374 ID=Msa0054760-mRNA-1:cds;Parent=Msa0054760-mRNA-1
chr1_2 CDS 9476063 9476124 9476063 ID=Msa0054760-mRNA-1:cds;Parent=Msa0054760-mRNA-1
chr1_2 CDS 9477275 9477393 9477275 ID=Msa0054760-mRNA-1:cds;Parent=Msa0054760-mRNA-1
chr1_2 CDS 9477473 9477640 9477473 ID=Msa0054760-mRNA-1:cds;Parent=Msa0054760-mRNA-1
chr1_2 CDS 9477932 9477961 9477932 ID=Msa0054760-mRNA-1:cds;Parent=Msa0054760-mRNA-1
chr1_2 three_prime_UTR 9477962 9478273 9477962 ID=Msa0054760-mRNA-1:three_prime_utr;Parent=Msa0054760-mRNA-1
Gene Sequence

>Msa0054760

ATGGTTTCCATGGCTTCTTCCACAACCTTCTTCACACCTCTTCACAATTTCAATCAAGCTAGAACATACTCAACACCTTCAATTTCTTTGCCTTTTGTAAAATCCTCAATTGCTTCTTCAAAATCACCTTTTTTTCAACATGGCTTTTCTCAACCAACCTCTTTCGATTTTCCTAAGGCTGTTTTGAAGTCTAAGTCTTTCTCAGTCAACGCTAGAGCTGTTACTGATAAATCCATTTATGATTTTACTGTCAAGGATATTGATAAGAAAGATGTGCCTCTTAGCAAATTCAAGGGGAAGGTTCTTTTGATTGTCAATGTTGCTTCAAGATGCGGTTTGACATCATCAAACTACACGGAACTCTCACACTTGTATGAAAATTTTAAAGACAAAGGTTTGGAGATTCTAGCTTTCCCTTGCAATCAATTTGGCATGCAGGAGCCTGGATCAAATGAAGAAATTAAGAAATTTGCTTGCACTAGGTTCAAAGCAGAATTTCCAATTTTCGATAAGGTTGATGTAAATGGACCATTTACTGCTCCAGTATACCAGTTTCTGAAGTCAAGTTCTGGAGGGTTTTTCGGTGATCTTGTCAAGTGGAATTTTGAGAAATTCTTGGTCGATAAAAATGGTAAAGTTGTTGAACGATACCCACCAACAACCTCTCCTTTTCAAATTGAGAAGGATATCCAGAAGTTACTTGCTGCGTGA

Protein sequence

>Msa0054760

MVSMASSTTFFTPLHNFNQARTYSTPSISLPFVKSSIASSKSPFFQHGFSQPTSFDFPKAVLKSKSFSVNARAVTDKSIYDFTVKDIDKKDVPLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKDKGLEILAFPCNQFGMQEPGSNEEIKKFACTRFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDLVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA*