AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423600 MtrunA17_Chr3g0125291 97.196 214 2 1 1 210 1 214 3.92e-157 433
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423600 AT4G37925.1 55.981 209 84 4 1 204 1 206 6.13e-79 235

Find 50 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAAAAGCACTGGTTTC+TGG 0.141947 3_2:+73535333 None:intergenic
CTTGGTCTATTCTTACTTTC+AGG 0.183071 3_2:-73535238 Msa0423600:CDS
CCAAATTATCCATACAAAAT+TGG 0.229236 3_2:-73535623 Msa0423600:CDS
CATCAGTAGGATCAAGAATA+AGG 0.246691 3_2:+73535289 None:intergenic
CAAGGCATGACCAGGGAATA+TGG 0.310643 3_2:-73535414 Msa0423600:CDS
TAGACCAAGTTGCAAGTATC+AGG 0.336990 3_2:+73535252 None:intergenic
ACCTGAGGTTCAACTGGCCT+TGG 0.343629 3_2:+73535450 None:intergenic
TCTCAAGTACTAGCATCTTC+AGG 0.350319 3_2:+73534468 None:intergenic
GAATACACACTTCGGTTGAT+TGG 0.380394 3_2:-73534618 Msa0423600:CDS
TTCTTACTTTCAGGAGCTTG+TGG 0.404103 3_2:-73535229 Msa0423600:CDS
TCAACAACAATCTGATGTTA+AGG 0.415802 3_2:-73535547 Msa0423600:CDS
TAATTTACAAATTAAAGAAC+TGG 0.430706 3_2:+73534358 None:intergenic
ATAAGAAAGTTGTTATATGA+TGG 0.433915 3_2:-73534576 Msa0423600:CDS
CGAAGTGTGTATTCATTCAA+TGG 0.452108 3_2:+73534627 None:intergenic
CTTATATTGAGCACTTGCAT+TGG 0.457552 3_2:+73534276 None:intergenic
GGCCACAAGTTGTTCCTACA+TGG 0.484273 3_2:-73535652 Msa0423600:CDS
CTGAGTTTGATCAAAAGCAC+TGG 0.490193 3_2:+73535326 None:intergenic
TAAGAAAGTTGTTATATGAT+GGG 0.494772 3_2:-73534575 Msa0423600:CDS
ATCAGTAGGATCAAGAATAA+GGG 0.496505 3_2:+73535290 None:intergenic
CAGGTGATTGTAAAAGATCA+AGG 0.496992 3_2:-73535432 Msa0423600:CDS
AATCAACAAATTAATCCAAA+AGG 0.501012 3_2:-73535480 Msa0423600:CDS
TAAAAGATCAAGGCATGACC+AGG 0.521510 3_2:-73535422 Msa0423600:CDS
TCAAGTATAATATGAATGCA+AGG 0.530324 3_2:-73534548 Msa0423600:CDS
TGCAAGTGCTCAATATAAGC+AGG 0.536972 3_2:-73534272 Msa0423600:three_prime_UTR
GAAACAGACGGTGTGAAAGT+AGG 0.560812 3_2:-73535525 Msa0423600:CDS
CCACTGTCCTCCATATTCCC+TGG 0.567133 3_2:+73535404 None:intergenic
AGGGTTCTGAATTTCAGCAT+GGG 0.568039 3_2:-73534528 Msa0423600:CDS
CAAGTATAATATGAATGCAA+GGG 0.571561 3_2:-73534547 Msa0423600:CDS
ATCCTACTGATGAGTTTGTG+TGG 0.588183 3_2:-73535278 Msa0423600:CDS
TTATCCATACAAAATTGGAC+AGG 0.589821 3_2:-73535618 Msa0423600:CDS
AAGGGTTCTGAATTTCAGCA+TGG 0.591866 3_2:-73534529 Msa0423600:CDS
AAGAAAGTTGTTATATGATG+GGG 0.592164 3_2:-73534574 Msa0423600:CDS
GAATCCTGATACTTGCAACT+TGG 0.593694 3_2:-73535256 Msa0423600:CDS
GGAGCTTGTGGATCACTATG+AGG 0.594812 3_2:-73535217 Msa0423600:intron
TCCATACAAAATTGGACAGG+AGG 0.595865 3_2:-73535615 Msa0423600:CDS
AAGTACTAGCATCTTCAGGT+TGG 0.600680 3_2:+73534472 None:intergenic
CATTGAATGAATACACACTT+CGG 0.613957 3_2:-73534626 Msa0423600:CDS
GGGTTCTGAATTTCAGCATG+GGG 0.628137 3_2:-73534527 Msa0423600:CDS
TTCCACACAAACTCATCAGT+AGG 0.644633 3_2:+73535276 None:intergenic
AACCATGTAGGAACAACTTG+TGG 0.645922 3_2:+73535650 None:intergenic
TTGTTGTTGAACATGATCCG+TGG 0.660958 3_2:+73534501 None:intergenic
ATCCAAAAGGAACAAAACCA+AGG 0.667834 3_2:-73535467 Msa0423600:CDS
TAATTTGGTAGAAACCATGT+AGG 0.670055 3_2:+73535638 None:intergenic
ATTTCAGCATGGGGAAACCA+CGG 0.674315 3_2:-73534518 Msa0423600:CDS
ATAGATCCTCACATGTCGCG+TGG 0.684738 3_2:+73535371 None:intergenic
TCTGATGTTAAGGAAACAGA+CGG 0.690604 3_2:-73535537 Msa0423600:CDS
AAAAGATCAAGGCATGACCA+GGG 0.707335 3_2:-73535421 Msa0423600:CDS
CCAGGGAATATGGAGGACAG+TGG 0.721629 3_2:-73535404 Msa0423600:CDS
GCTGTGCCACGCGACATGTG+AGG 0.722585 3_2:-73535377 Msa0423600:CDS
GGCATGACCAGGGAATATGG+AGG 0.766490 3_2:-73535411 Msa0423600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAAATATCAATACA+AGG - chr3_2:73534800-73534819 Msa0423600:intron 15.0%
!! TAATTTACAAATTAAAGAAC+TGG + chr3_2:73535538-73535557 None:intergenic 15.0%
!! CAAAAATAAATATCAATACA+AGG - chr3_2:73534800-73534819 Msa0423600:intron 15.0%
!! TAATTTACAAATTAAAGAAC+TGG + chr3_2:73535538-73535557 None:intergenic 15.0%
!! AATCAACAAATTAATCCAAA+AGG - chr3_2:73534413-73534432 Msa0423600:three_prime_UTR 20.0%
!! TGTGAATTTGATTATGTTTA+AGG + chr3_2:73534708-73534727 None:intergenic 20.0%
!! ATAGTCTATGCTTAAATTTA+AGG - chr3_2:73534830-73534849 Msa0423600:intron 20.0%
!! ATACAATTCTAACACTTAAT+TGG + chr3_2:73535128-73535147 None:intergenic 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG - chr3_2:73535239-73535258 Msa0423600:CDS 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG - chr3_2:73535317-73535336 Msa0423600:CDS 20.0%
!! TAAGAAAGTTGTTATATGAT+GGG - chr3_2:73535318-73535337 Msa0423600:CDS 20.0%
!!! AAGAGATTTTTTTTCTATCT+TGG + chr3_2:73535562-73535581 None:intergenic 20.0%
!! AATCAACAAATTAATCCAAA+AGG - chr3_2:73534413-73534432 Msa0423600:three_prime_UTR 20.0%
!! TGTGAATTTGATTATGTTTA+AGG + chr3_2:73534708-73534727 None:intergenic 20.0%
!! ATAGTCTATGCTTAAATTTA+AGG - chr3_2:73534830-73534849 Msa0423600:intron 20.0%
!! ATACAATTCTAACACTTAAT+TGG + chr3_2:73535128-73535147 None:intergenic 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG - chr3_2:73535239-73535258 Msa0423600:CDS 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG - chr3_2:73535317-73535336 Msa0423600:CDS 20.0%
!! TAAGAAAGTTGTTATATGAT+GGG - chr3_2:73535318-73535337 Msa0423600:CDS 20.0%
!!! AAGAGATTTTTTTTCTATCT+TGG + chr3_2:73535562-73535581 None:intergenic 20.0%
!! CCAATTTTGTATGGATAATT+TGG + chr3_2:73534273-73534292 None:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG - chr3_2:73534270-73534289 Msa0423600:three_prime_UTR 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG + chr3_2:73534410-73534429 None:intergenic 25.0%
! CTAGTTAAAGGTAAATTGTT+CGG - chr3_2:73534890-73534909 Msa0423600:intron 25.0%
!!! GTATCATGATTTGTTAAATC+TGG - chr3_2:73535144-73535163 Msa0423600:intron 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG + chr3_2:73535241-73535260 None:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG - chr3_2:73535238-73535257 Msa0423600:CDS 25.0%
! AAGAAAGTTGTTATATGATG+GGG - chr3_2:73535319-73535338 Msa0423600:CDS 25.0%
! TCAAGTATAATATGAATGCA+AGG - chr3_2:73535345-73535364 Msa0423600:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG - chr3_2:73535346-73535365 Msa0423600:CDS 25.0%
!! CCAATTTTGTATGGATAATT+TGG + chr3_2:73534273-73534292 None:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG - chr3_2:73534270-73534289 Msa0423600:three_prime_UTR 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG + chr3_2:73534410-73534429 None:intergenic 25.0%
! CTAGTTAAAGGTAAATTGTT+CGG - chr3_2:73534890-73534909 Msa0423600:intron 25.0%
!!! GTATCATGATTTGTTAAATC+TGG - chr3_2:73535144-73535163 Msa0423600:intron 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG + chr3_2:73535241-73535260 None:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG - chr3_2:73535238-73535257 Msa0423600:CDS 25.0%
! AAGAAAGTTGTTATATGATG+GGG - chr3_2:73535319-73535338 Msa0423600:CDS 25.0%
! TCAAGTATAATATGAATGCA+AGG - chr3_2:73535345-73535364 Msa0423600:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG - chr3_2:73535346-73535365 Msa0423600:CDS 25.0%
TAATTTGGTAGAAACCATGT+AGG + chr3_2:73534258-73534277 None:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG - chr3_2:73534275-73534294 Msa0423600:three_prime_UTR 30.0%
TGTTGAGCTGATATGAAAAA+TGG + chr3_2:73534332-73534351 None:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG - chr3_2:73534346-73534365 Msa0423600:three_prime_UTR 30.0%
ATCAGTAGGATCAAGAATAA+GGG + chr3_2:73534606-73534625 None:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG + chr3_2:73534734-73534753 None:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG - chr3_2:73534734-73534753 Msa0423600:intron 30.0%
AGTTGTTAATCCAAAAAGCT+AGG - chr3_2:73535057-73535076 Msa0423600:intron 30.0%
GTAGCAGAATTAACACAAAA+TGG + chr3_2:73535182-73535201 None:intergenic 30.0%
CATTGAATGAATACACACTT+CGG - chr3_2:73535267-73535286 Msa0423600:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG + chr3_2:73535469-73535488 None:intergenic 30.0%
!!! TCCAAGATAGCATGTTTTTT+GGG - chr3_2:73535583-73535602 Msa0423600:CDS 30.0%
TAATTTGGTAGAAACCATGT+AGG + chr3_2:73534258-73534277 None:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG - chr3_2:73534275-73534294 Msa0423600:three_prime_UTR 30.0%
TGTTGAGCTGATATGAAAAA+TGG + chr3_2:73534332-73534351 None:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG - chr3_2:73534346-73534365 Msa0423600:three_prime_UTR 30.0%
ATCAGTAGGATCAAGAATAA+GGG + chr3_2:73534606-73534625 None:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG + chr3_2:73534734-73534753 None:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG - chr3_2:73534734-73534753 Msa0423600:intron 30.0%
AGTTGTTAATCCAAAAAGCT+AGG - chr3_2:73535057-73535076 Msa0423600:intron 30.0%
GTAGCAGAATTAACACAAAA+TGG + chr3_2:73535182-73535201 None:intergenic 30.0%
CATTGAATGAATACACACTT+CGG - chr3_2:73535267-73535286 Msa0423600:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG + chr3_2:73535469-73535488 None:intergenic 30.0%
!!! TCCAAGATAGCATGTTTTTT+GGG - chr3_2:73535583-73535602 Msa0423600:CDS 30.0%
TCTGATGTTAAGGAAACAGA+CGG - chr3_2:73534356-73534375 Msa0423600:three_prime_UTR 35.0%
ATCCAAAAGGAACAAAACCA+AGG - chr3_2:73534426-73534445 Msa0423600:three_prime_UTR 35.0%
! TGATCTTTTACAATCACCTG+AGG + chr3_2:73534461-73534480 None:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG - chr3_2:73534461-73534480 Msa0423600:exon 35.0%
! TGCTTTTGATCAAACTCAGA+TGG - chr3_2:73534571-73534590 Msa0423600:CDS 35.0%
CATCAGTAGGATCAAGAATA+AGG + chr3_2:73534607-73534626 None:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG - chr3_2:73534655-73534674 Msa0423600:intron 35.0%
AAAATGATTGAGAGCTCAAG+TGG - chr3_2:73534857-73534876 Msa0423600:intron 35.0%
!! GGTTGATGAACTCTAGTTAA+AGG - chr3_2:73534878-73534897 Msa0423600:intron 35.0%
TGTCTGGAAGGTAAATAAAG+TGG + chr3_2:73534960-73534979 None:intergenic 35.0%
TAATCCAAAAAGCTAGGAGA+AGG - chr3_2:73535063-73535082 Msa0423600:intron 35.0%
!! TTTTCCTTCTCCTAGCTTTT+TGG + chr3_2:73535070-73535089 None:intergenic 35.0%
!! CAAGCTTTTTCTCTCTACTA+TGG - chr3_2:73535201-73535220 Msa0423600:intron 35.0%
CGAAGTGTGTATTCATTCAA+TGG + chr3_2:73535269-73535288 None:intergenic 35.0%
!!! GTCCAAGATAGCATGTTTTT+TGG - chr3_2:73535582-73535601 Msa0423600:CDS 35.0%
!!! CCAAGATAGCATGTTTTTTG+GGG - chr3_2:73535584-73535603 Msa0423600:CDS 35.0%
CTTATATTGAGCACTTGCAT+TGG + chr3_2:73535620-73535639 None:intergenic 35.0%
TCTGATGTTAAGGAAACAGA+CGG - chr3_2:73534356-73534375 Msa0423600:three_prime_UTR 35.0%
ATCCAAAAGGAACAAAACCA+AGG - chr3_2:73534426-73534445 Msa0423600:three_prime_UTR 35.0%
! TGATCTTTTACAATCACCTG+AGG + chr3_2:73534461-73534480 None:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG - chr3_2:73534461-73534480 Msa0423600:exon 35.0%
! TGCTTTTGATCAAACTCAGA+TGG - chr3_2:73534571-73534590 Msa0423600:CDS 35.0%
CATCAGTAGGATCAAGAATA+AGG + chr3_2:73534607-73534626 None:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG - chr3_2:73534655-73534674 Msa0423600:intron 35.0%
AAAATGATTGAGAGCTCAAG+TGG - chr3_2:73534857-73534876 Msa0423600:intron 35.0%
!! GGTTGATGAACTCTAGTTAA+AGG - chr3_2:73534878-73534897 Msa0423600:intron 35.0%
TGTCTGGAAGGTAAATAAAG+TGG + chr3_2:73534960-73534979 None:intergenic 35.0%
TAATCCAAAAAGCTAGGAGA+AGG - chr3_2:73535063-73535082 Msa0423600:intron 35.0%
!! TTTTCCTTCTCCTAGCTTTT+TGG + chr3_2:73535070-73535089 None:intergenic 35.0%
!! CAAGCTTTTTCTCTCTACTA+TGG - chr3_2:73535201-73535220 Msa0423600:intron 35.0%
CGAAGTGTGTATTCATTCAA+TGG + chr3_2:73535269-73535288 None:intergenic 35.0%
!!! GTCCAAGATAGCATGTTTTT+TGG - chr3_2:73535582-73535601 Msa0423600:CDS 35.0%
!!! CCAAGATAGCATGTTTTTTG+GGG - chr3_2:73535584-73535603 Msa0423600:CDS 35.0%
CTTATATTGAGCACTTGCAT+TGG + chr3_2:73535620-73535639 None:intergenic 35.0%
AACCATGTAGGAACAACTTG+TGG + chr3_2:73534246-73534265 None:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG - chr3_2:73534278-73534297 Msa0423600:three_prime_UTR 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG + chr3_2:73534282-73534301 None:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG - chr3_2:73534471-73534490 Msa0423600:CDS 40.0%
AAAAGATCAAGGCATGACCA+GGG - chr3_2:73534472-73534491 Msa0423600:CDS 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG + chr3_2:73534563-73534582 None:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG + chr3_2:73534570-73534589 None:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG - chr3_2:73534615-73534634 Msa0423600:CDS 40.0%
TTCCACACAAACTCATCAGT+AGG + chr3_2:73534620-73534639 None:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG - chr3_2:73534637-73534656 Msa0423600:intron 40.0%
TAGACCAAGTTGCAAGTATC+AGG + chr3_2:73534644-73534663 None:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG - chr3_2:73534664-73534683 Msa0423600:intron 40.0%
! GTATTCGAGTTCAAATCCTG+AGG - chr3_2:73534915-73534934 Msa0423600:intron 40.0%
GACTAAGAATTGTTCTCCTC+AGG + chr3_2:73534934-73534953 None:intergenic 40.0%
TTTACCTTCCAGACAAACTC+CGG - chr3_2:73534965-73534984 Msa0423600:intron 40.0%
GAATACACACTTCGGTTGAT+TGG - chr3_2:73535275-73535294 Msa0423600:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG - chr3_2:73535364-73535383 Msa0423600:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG - chr3_2:73535365-73535384 Msa0423600:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG + chr3_2:73535395-73535414 None:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG + chr3_2:73535424-73535443 None:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG + chr3_2:73535428-73535447 None:intergenic 40.0%
CCCCAAAAAACATGCTATCT+TGG + chr3_2:73535587-73535606 None:intergenic 40.0%
TGCAAGTGCTCAATATAAGC+AGG - chr3_2:73535621-73535640 Msa0423600:CDS 40.0%
AACCATGTAGGAACAACTTG+TGG + chr3_2:73534246-73534265 None:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG - chr3_2:73534278-73534297 Msa0423600:three_prime_UTR 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG + chr3_2:73534282-73534301 None:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG - chr3_2:73534471-73534490 Msa0423600:CDS 40.0%
AAAAGATCAAGGCATGACCA+GGG - chr3_2:73534472-73534491 Msa0423600:CDS 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG + chr3_2:73534563-73534582 None:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG + chr3_2:73534570-73534589 None:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG - chr3_2:73534615-73534634 Msa0423600:CDS 40.0%
TTCCACACAAACTCATCAGT+AGG + chr3_2:73534620-73534639 None:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG - chr3_2:73534637-73534656 Msa0423600:intron 40.0%
TAGACCAAGTTGCAAGTATC+AGG + chr3_2:73534644-73534663 None:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG - chr3_2:73534664-73534683 Msa0423600:intron 40.0%
! GTATTCGAGTTCAAATCCTG+AGG - chr3_2:73534915-73534934 Msa0423600:intron 40.0%
GACTAAGAATTGTTCTCCTC+AGG + chr3_2:73534934-73534953 None:intergenic 40.0%
TTTACCTTCCAGACAAACTC+CGG - chr3_2:73534965-73534984 Msa0423600:intron 40.0%
GAATACACACTTCGGTTGAT+TGG - chr3_2:73535275-73535294 Msa0423600:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG - chr3_2:73535364-73535383 Msa0423600:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG - chr3_2:73535365-73535384 Msa0423600:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG + chr3_2:73535395-73535414 None:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG + chr3_2:73535424-73535443 None:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG + chr3_2:73535428-73535447 None:intergenic 40.0%
CCCCAAAAAACATGCTATCT+TGG + chr3_2:73535587-73535606 None:intergenic 40.0%
TGCAAGTGCTCAATATAAGC+AGG - chr3_2:73535621-73535640 Msa0423600:CDS 40.0%
GAAACAGACGGTGTGAAAGT+AGG - chr3_2:73534368-73534387 Msa0423600:three_prime_UTR 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG + chr3_2:73534431-73534450 None:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG + chr3_2:73534452-73534471 None:intergenic 45.0%
TTGACAATCCGGAGTTTGTC+TGG + chr3_2:73534976-73534995 None:intergenic 45.0%
AGACAAACTCCGGATTGTCA+AGG - chr3_2:73534975-73534994 Msa0423600:intron 45.0%
GGAATGAAGCCTTGACAATC+CGG + chr3_2:73534987-73535006 None:intergenic 45.0%
AGGCTTCATTCCCCTGAAAA+CGG - chr3_2:73534995-73535014 Msa0423600:intron 45.0%
! CCTTGACAATCCGTTTTCAG+GGG + chr3_2:73535008-73535027 None:intergenic 45.0%
! GCCTTGACAATCCGTTTTCA+GGG + chr3_2:73535009-73535028 None:intergenic 45.0%
! AGCCTTGACAATCCGTTTTC+AGG + chr3_2:73535010-73535029 None:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG - chr3_2:73535366-73535385 Msa0423600:CDS 45.0%
ATTTCAGCATGGGGAAACCA+CGG - chr3_2:73535375-73535394 Msa0423600:CDS 45.0%
GAAACAGACGGTGTGAAAGT+AGG - chr3_2:73534368-73534387 Msa0423600:three_prime_UTR 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG + chr3_2:73534431-73534450 None:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG + chr3_2:73534452-73534471 None:intergenic 45.0%
TTGACAATCCGGAGTTTGTC+TGG + chr3_2:73534976-73534995 None:intergenic 45.0%
AGACAAACTCCGGATTGTCA+AGG - chr3_2:73534975-73534994 Msa0423600:intron 45.0%
GGAATGAAGCCTTGACAATC+CGG + chr3_2:73534987-73535006 None:intergenic 45.0%
AGGCTTCATTCCCCTGAAAA+CGG - chr3_2:73534995-73535014 Msa0423600:intron 45.0%
! CCTTGACAATCCGTTTTCAG+GGG + chr3_2:73535008-73535027 None:intergenic 45.0%
! GCCTTGACAATCCGTTTTCA+GGG + chr3_2:73535009-73535028 None:intergenic 45.0%
! AGCCTTGACAATCCGTTTTC+AGG + chr3_2:73535010-73535029 None:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG - chr3_2:73535366-73535385 Msa0423600:CDS 45.0%
ATTTCAGCATGGGGAAACCA+CGG - chr3_2:73535375-73535394 Msa0423600:CDS 45.0%
GGCCACAAGTTGTTCCTACA+TGG - chr3_2:73534241-73534260 Msa0423600:three_prime_UTR 50.0%
CAAGGCATGACCAGGGAATA+TGG - chr3_2:73534479-73534498 Msa0423600:CDS 50.0%
ATAGATCCTCACATGTCGCG+TGG + chr3_2:73534525-73534544 None:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG - chr3_2:73534676-73534695 Msa0423600:intron 50.0%
CAATCCGGAGTTTGTCTGGA+AGG + chr3_2:73534972-73534991 None:intergenic 50.0%
!! CCCCTGAAAACGGATTGTCA+AGG - chr3_2:73535005-73535024 Msa0423600:intron 50.0%
GGCCACAAGTTGTTCCTACA+TGG - chr3_2:73534241-73534260 Msa0423600:three_prime_UTR 50.0%
CAAGGCATGACCAGGGAATA+TGG - chr3_2:73534479-73534498 Msa0423600:CDS 50.0%
ATAGATCCTCACATGTCGCG+TGG + chr3_2:73534525-73534544 None:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG - chr3_2:73534676-73534695 Msa0423600:intron 50.0%
CAATCCGGAGTTTGTCTGGA+AGG + chr3_2:73534972-73534991 None:intergenic 50.0%
!! CCCCTGAAAACGGATTGTCA+AGG - chr3_2:73535005-73535024 Msa0423600:intron 50.0%
ACCAAGGCCAGTTGAACCTC+AGG - chr3_2:73534442-73534461 Msa0423600:three_prime_UTR 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG + chr3_2:73534446-73534465 None:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG - chr3_2:73534482-73534501 Msa0423600:CDS 55.0%
CCACTGTCCTCCATATTCCC+TGG + chr3_2:73534492-73534511 None:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG - chr3_2:73534489-73534508 Msa0423600:CDS 55.0%
ACCAAGGCCAGTTGAACCTC+AGG - chr3_2:73534442-73534461 Msa0423600:three_prime_UTR 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG + chr3_2:73534446-73534465 None:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG - chr3_2:73534482-73534501 Msa0423600:CDS 55.0%
CCACTGTCCTCCATATTCCC+TGG + chr3_2:73534492-73534511 None:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG - chr3_2:73534489-73534508 Msa0423600:CDS 55.0%
GCTGTGCCACGCGACATGTG+AGG - chr3_2:73534516-73534535 Msa0423600:CDS 65.0%
GCTGTGCCACGCGACATGTG+AGG - chr3_2:73534516-73534535 Msa0423600:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 73534239 73535676 73534239 ID=Msa0423600;Name=Msa0423600
chr3_2 mRNA 73534239 73535676 73534239 ID=Msa0423600-mRNA-1;Parent=Msa0423600;Name=Msa0423600-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.5|0.33|1|0.5|0.33|3|231|210
chr3_2 exon 73534239 73534655 73534239 ID=Msa0423600-mRNA-1:exon:18385;Parent=Msa0423600-mRNA-1
chr3_2 exon 73535218 73535451 73535218 ID=Msa0423600-mRNA-1:exon:18384;Parent=Msa0423600-mRNA-1
chr3_2 exon 73535464 73535676 73535464 ID=Msa0423600-mRNA-1:exon:18383;Parent=Msa0423600-mRNA-1
chr3_2 CDS 73535464 73535676 73535464 ID=Msa0423600-mRNA-1:cds;Parent=Msa0423600-mRNA-1
chr3_2 CDS 73535218 73535451 73535218 ID=Msa0423600-mRNA-1:cds;Parent=Msa0423600-mRNA-1
chr3_2 CDS 73534470 73534655 73534470 ID=Msa0423600-mRNA-1:cds;Parent=Msa0423600-mRNA-1
chr3_2 three_prime_UTR 73534239 73534469 73534239 ID=Msa0423600-mRNA-1:three_prime_utr;Parent=Msa0423600-mRNA-1
Gene Sequence

>Msa0423600

ATGGCCACAAGTTGTTCCTACATGGTTTCTACCAAATTATCCATACAAAATTGGACAGGAGGAAGAAGAAAAGAAGTAAGAAACAGAACTCCATTTTTCATATCAGCTCAACAACAATCTGATGTTAAGGAAACAGACGGTGTGAAAGTAGGAGAAGAGAAAGAAATACCACAAAATCAACAAATTAATCCAAAAGGAACAAAACCAAGGCCAGTGATTGTAAAAGATCAAGGCATGACCAGGGAATATGGAGGACAGTGGTTGAGCTGTGCCACGCGACATGTGAGGATCTATGCAGCTTATATTGATCCAGAAACCAGTGCTTTTGATCAAACTCAGATGGATAAACTCACCCTTATTCTTGATCCTACTGATGAGTTTGTGTGGAATCCTGATACTTGCAACTTGGTCTATTCTTACTTTCAGGAGCTTGTGGATCACTATGAGGGTGCTCCATTGAATGAATACACACTTCGGTTGATTGGTTCAGACATAGAGCATTATATAAGAAAGTTGTTATATGATGGGGTAATCAAGTATAATATGAATGCAAGGGTTCTGAATTTCAGCATGGGGAAACCACGGATCATGTTCAACAACAATGATATCCAACCTGAAGATGCTAGTACTTGA

Protein sequence

>Msa0423600

MATSCSYMVSTKLSIQNWTGGRRKEVRNRTPFFISAQQQSDVKETDGVKVGEEKEIPQNQQINPKGTKPRPVIVKDQGMTREYGGQWLSCATRHVRIYAAYIDPETSAFDQTQMDKLTLILDPTDEFVWNPDTCNLVYSYFQELVDHYEGAPLNEYTLRLIGSDIEHYIRKLLYDGVIKYNMNARVLNFSMGKPRIMFNNNDIQPEDAST*