Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185440 | XP_013444989.1 | 98.675 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 4.10e-103 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185440 | sp|O64644|SAP18_ARATH | 66.887 | 151 | 49 | 1 | 1 | 150 | 1 | 151 | 1.44e-57 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185440 | G7ZXR9 | 98.675 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 1.96e-103 | 301 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa1185440 | 0.813429 | 2.571032e-51 | -8.615850e-47 |
| Msa0068020 | Msa1185440 | 0.810559 | 1.085144e-50 | -8.615850e-47 |
| Msa0115370 | Msa1185440 | 0.801794 | 7.610636e-49 | -8.615850e-47 |
| Msa0606810 | Msa1185440 | 0.809594 | 1.752123e-50 | -8.615850e-47 |
| Msa0662630 | Msa1185440 | 0.804618 | 1.981738e-49 | -8.615850e-47 |
| Msa0702270 | Msa1185440 | 0.802307 | 5.968496e-49 | -8.615850e-47 |
| Msa1173900 | Msa1185440 | 0.803331 | 3.668051e-49 | -8.615850e-47 |
| Msa1185440 | Msa1206650 | 0.813185 | 2.909048e-51 | -8.615850e-47 |
| Msa1185440 | Msa1211830 | 0.803688 | 3.093100e-49 | -8.615850e-47 |
| Msa1185440 | Msa1445940 | 0.802632 | 5.116042e-49 | -8.615850e-47 |
| Msa1185440 | Msa1457790 | 0.804613 | 1.986123e-49 | -8.615850e-47 |
| Msa0484740 | Msa1185440 | 0.802465 | 5.539385e-49 | -8.615850e-47 |
| Msa0490820 | Msa1185440 | 0.817798 | 2.735384e-52 | -8.615850e-47 |
| Msa0943170 | Msa1185440 | 0.824498 | 7.811682e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185440 | MtrunA17_Chr8g0351071 | 98.675 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 3.77e-107 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185440 | AT2G45640.1 | 66.887 | 151 | 49 | 1 | 1 | 150 | 1 | 151 | 1.46e-58 | 179 |
| Msa1185440 | AT2G45640.2 | 65.563 | 151 | 48 | 2 | 1 | 150 | 1 | 148 | 5.87e-55 | 170 |
Find 49 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATCTGAACTTCATCTTT+AGG | 0.252278 | 8_1:+22638923 | None:intergenic |
| GGTCTGCCGCCTTGTCGTTT+TGG | 0.303236 | 8_1:+22639186 | None:intergenic |
| CAATGTAACTTTGTTGTGTT+TGG | 0.318166 | 8_1:-22635025 | Msa1185440:three_prime_UTR |
| TAACAACTAAACATTCTAAA+AGG | 0.361567 | 8_1:+22634945 | None:intergenic |
| GGCAAGGCTTTAGCCGATCT+TGG | 0.386747 | 8_1:-22635178 | Msa1185440:CDS |
| AACTTTCCTTTCAGCTTAAG+TGG | 0.398406 | 8_1:+22634856 | None:intergenic |
| GCGTTTCTTCTTCTTGCAGC+AGG | 0.399744 | 8_1:+22636586 | None:intergenic |
| CCTCTTGGTGGTGGAGGTAA+TGG | 0.405437 | 8_1:+22639165 | None:intergenic |
| GTGCTGCTCCTGTGTGATGA+TGG | 0.417704 | 8_1:-22635003 | Msa1185440:three_prime_UTR |
| GTGGGCAAGACATTGTCTTA+TGG | 0.420586 | 8_1:-22635220 | Msa1185440:CDS |
| GATGGAGGAGGCGGACCTCT+TGG | 0.424184 | 8_1:+22639150 | None:intergenic |
| TGCGCAGATTGGTGATTACT+TGG | 0.452787 | 8_1:-22635080 | Msa1185440:intron |
| GGACGGGAGGATGGAGGAGG+CGG | 0.460368 | 8_1:+22639141 | None:intergenic |
| GATGATGGTCTTCAAACATT+TGG | 0.462624 | 8_1:-22634988 | Msa1185440:three_prime_UTR |
| GGCGGACCTCTTGGTGGTGG+AGG | 0.473936 | 8_1:+22639159 | None:intergenic |
| GGAGGCGGACCTCTTGGTGG+TGG | 0.474246 | 8_1:+22639156 | None:intergenic |
| CGAGGACGGGAGGATGGAGG+AGG | 0.477646 | 8_1:+22639138 | None:intergenic |
| CTTTACCTCAAAACCAAGAT+CGG | 0.479352 | 8_1:+22635165 | None:intergenic |
| AAGTGGTACTGCTGACCAAT+TGG | 0.479361 | 8_1:+22634873 | None:intergenic |
| CTCCGTGTGTTGACTAAGAT+AGG | 0.482091 | 8_1:-22638989 | Msa1185440:CDS |
| AAGACATTGTCTTATGGAAC+TGG | 0.485281 | 8_1:-22635214 | Msa1185440:CDS |
| GATAGGAAGCCATCATTCAA+TGG | 0.497710 | 8_1:-22638972 | Msa1185440:CDS |
| AACTGGTTCGAGACGAGGAC+GGG | 0.498527 | 8_1:+22639125 | None:intergenic |
| CGAACCAGTTGATCGCGAAA+AGG | 0.502030 | 8_1:-22639112 | Msa1185440:intron |
| GGAGGAGGCGGACCTCTTGG+TGG | 0.505652 | 8_1:+22639153 | None:intergenic |
| TTACCTCTTGAACTTTGAAA+CGG | 0.506136 | 8_1:+22636524 | None:intergenic |
| TCGAGACGAGGACGGGAGGA+TGG | 0.508378 | 8_1:+22639132 | None:intergenic |
| GTCAACACACGGAGGAGCAA+GGG | 0.548472 | 8_1:+22638998 | None:intergenic |
| GATTGGTGATTACTTGGATG+TGG | 0.571029 | 8_1:-22635074 | Msa1185440:CDS |
| ATGAAGTTCAGATTTATACA+TGG | 0.575884 | 8_1:-22638916 | Msa1185440:CDS |
| AGTCAACACACGGAGGAGCA+AGG | 0.577190 | 8_1:+22638997 | None:intergenic |
| CTCGAAGAAATGAGCGACGG+AGG | 0.579538 | 8_1:-22639210 | Msa1185440:exon |
| CGAAAGAATACATACAAGAT+CGG | 0.582794 | 8_1:+22638868 | None:intergenic |
| TGGCCGTTTCAAAGTTCAAG+AGG | 0.586342 | 8_1:-22636527 | Msa1185440:intron |
| CGATCAACTGGTTCGAGACG+AGG | 0.592470 | 8_1:+22639120 | None:intergenic |
| GGAACTGGAAGATTAGATGA+TGG | 0.596367 | 8_1:-22635199 | Msa1185440:CDS |
| AGACGAGGACGGGAGGATGG+AGG | 0.601741 | 8_1:+22639135 | None:intergenic |
| TGGTTCGAGACGAGGACGGG+AGG | 0.604236 | 8_1:+22639128 | None:intergenic |
| GCAGTACCACTTAAGCTGAA+AGG | 0.605018 | 8_1:-22634862 | Msa1185440:three_prime_UTR |
| CAACTGGTTCGAGACGAGGA+CGG | 0.612970 | 8_1:+22639124 | None:intergenic |
| TGGAAGATTAGATGATGGCA+AGG | 0.613081 | 8_1:-22635194 | Msa1185440:CDS |
| GACGGAGGACCAAAACGACA+AGG | 0.629621 | 8_1:-22639195 | Msa1185440:CDS |
| TCAACACACGGAGGAGCAAG+GGG | 0.630006 | 8_1:+22638999 | None:intergenic |
| TTCCTATCTTAGTCAACACA+CGG | 0.660500 | 8_1:+22638987 | None:intergenic |
| CCATTACCTCCACCACCAAG+AGG | 0.666000 | 8_1:-22639165 | Msa1185440:CDS |
| AGTCTCGAAGAAATGAGCGA+CGG | 0.704284 | 8_1:-22639213 | Msa1185440:exon |
| GGAGGACCAAAACGACAAGG+CGG | 0.709504 | 8_1:-22639192 | Msa1185440:CDS |
| TTTGAAGACCATCATCACAC+AGG | 0.714749 | 8_1:+22634995 | None:intergenic |
| CTATCTTAGTCAACACACGG+AGG | 0.795134 | 8_1:+22638990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTAATATTATTATAGAT+AGG | - | chr8_1:22636007-22636026 | Msa1185440:intron | 10.0% |
| !!! | TATTAATGTATATTTTGTAT+AGG | - | chr8_1:22637502-22637521 | Msa1185440:intron | 10.0% |
| !! | AGTTATTGAATAAACTAAAA+AGG | + | chr8_1:22636922-22636941 | None:intergenic | 15.0% |
| !! | TAAATATTATATGTATCAGA+GGG | + | chr8_1:22638002-22638021 | None:intergenic | 15.0% |
| !! | ATAAATATTATATGTATCAG+AGG | + | chr8_1:22638003-22638022 | None:intergenic | 15.0% |
| !! | TTTAAACATGTTAAAAGTTA+AGG | - | chr8_1:22638229-22638248 | Msa1185440:intron | 15.0% |
| !!! | ACTTTCATAATTTGTTATAT+TGG | + | chr8_1:22638547-22638566 | None:intergenic | 15.0% |
| !!! | ATAACTTTTTGGAAAAAATA+TGG | + | chr8_1:22638794-22638813 | None:intergenic | 15.0% |
| !!! | ATAAAAAGAAGTTAGGTTTT+AGG | + | chr8_1:22635065-22635084 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTATAAGCTATTG+TGG | - | chr8_1:22635832-22635851 | Msa1185440:intron | 20.0% |
| !! | ATTATTATAGATAGGCTTAT+AGG | - | chr8_1:22636015-22636034 | Msa1185440:intron | 20.0% |
| !! | TGTGAATAAGTGTTTAATTA+AGG | - | chr8_1:22636065-22636084 | Msa1185440:intron | 20.0% |
| !! | GTGAATAAGTGTTTAATTAA+GGG | - | chr8_1:22636066-22636085 | Msa1185440:intron | 20.0% |
| !! | TTAATGATGATATACTCTAT+TGG | - | chr8_1:22636109-22636128 | Msa1185440:intron | 20.0% |
| !! | ATATAAACCATGAATAAACT+AGG | + | chr8_1:22636265-22636284 | None:intergenic | 20.0% |
| !! | TAGTTTATTCATGGTTTATA+TGG | - | chr8_1:22636264-22636283 | Msa1185440:intron | 20.0% |
| !! | AGTGAGCTTAAAAAAAAAAA+TGG | - | chr8_1:22636332-22636351 | Msa1185440:intron | 20.0% |
| !!! | TTGTTTTCAGCTTAAAAAAA+TGG | - | chr8_1:22636689-22636708 | Msa1185440:intron | 20.0% |
| !!! | CTTTATTCATTTGTTTTTGA+AGG | + | chr8_1:22637106-22637125 | None:intergenic | 20.0% |
| !! | TCAAAAACAAATGAATAAAG+TGG | - | chr8_1:22637106-22637125 | Msa1185440:intron | 20.0% |
| !! | TTCAAATTATTAGTCAGAAT+AGG | - | chr8_1:22637145-22637164 | Msa1185440:intron | 20.0% |
| !!! | CTTATAACGGAATTTTAATT+AGG | + | chr8_1:22637194-22637213 | None:intergenic | 20.0% |
| !! | TCAATAAGAAATGAAAAAGT+AGG | - | chr8_1:22637386-22637405 | Msa1185440:intron | 20.0% |
| !!! | GTTATAACGGAATTTTAATT+AGG | + | chr8_1:22637420-22637439 | None:intergenic | 20.0% |
| !! | CCAAAAACTAAAAGTTATAA+CGG | + | chr8_1:22637433-22637452 | None:intergenic | 20.0% |
| !!! | TATAACTTTTAGTTTTTGGA+TGG | - | chr8_1:22637434-22637453 | Msa1185440:intron | 20.0% |
| !!! | TAATGTGTTTTGCTTTTTTT+GGG | - | chr8_1:22637730-22637749 | Msa1185440:intron | 20.0% |
| !! | TGAAATAAATACTACATCAT+TGG | - | chr8_1:22637810-22637829 | Msa1185440:intron | 20.0% |
| !!! | CAAGTCAAAAGATTTTATAT+TGG | + | chr8_1:22637966-22637985 | None:intergenic | 20.0% |
| !!! | TTTTGACTTGTATTATTGTT+GGG | - | chr8_1:22637976-22637995 | Msa1185440:intron | 20.0% |
| !! | TATAAATTACTTGTGTTTGT+GGG | + | chr8_1:22638176-22638195 | None:intergenic | 20.0% |
| !! | TTATAAATTACTTGTGTTTG+TGG | + | chr8_1:22638177-22638196 | None:intergenic | 20.0% |
| !!! | TCATTTTAGGGTTATTATTA+AGG | + | chr8_1:22638442-22638461 | None:intergenic | 20.0% |
| !! | TTAATAATAACCCTAAAATG+AGG | - | chr8_1:22638441-22638460 | Msa1185440:intron | 20.0% |
| !! | TAATAATAACCCTAAAATGA+GGG | - | chr8_1:22638442-22638461 | Msa1185440:intron | 20.0% |
| !!! | AAAAGATAGGAATAACTTTT+TGG | + | chr8_1:22638805-22638824 | None:intergenic | 20.0% |
| !! | TAACAACTAAACATTCTAAA+AGG | + | chr8_1:22639183-22639202 | None:intergenic | 20.0% |
| ! | GAATGGAATAAAAAGAAGTT+AGG | + | chr8_1:22635072-22635091 | None:intergenic | 25.0% |
| ! | AAAATTAACAAGGTCAAGAA+TGG | + | chr8_1:22635089-22635108 | None:intergenic | 25.0% |
| ! | GGAAATAGAGAAAATTAACA+AGG | + | chr8_1:22635099-22635118 | None:intergenic | 25.0% |
| ! | AAAAATCATCCATTGAATGA+TGG | + | chr8_1:22635165-22635184 | None:intergenic | 25.0% |
| ! | TAAATCTGAACTTCATCTTT+AGG | + | chr8_1:22635205-22635224 | None:intergenic | 25.0% |
| ! | ATGAAGTTCAGATTTATACA+TGG | - | chr8_1:22635209-22635228 | Msa1185440:CDS | 25.0% |
| !!! | CGCAGTGTTTTTATTTTTTT+AGG | - | chr8_1:22635278-22635297 | Msa1185440:intron | 25.0% |
| ! | CATTAGGATTATAGGTTATT+AGG | - | chr8_1:22635461-22635480 | Msa1185440:intron | 25.0% |
| ! | ATAGGTTATTAGGTTCTATT+AGG | - | chr8_1:22635471-22635490 | Msa1185440:intron | 25.0% |
| !!! | TTAATTTGCACTTTTGTCTA+AGG | - | chr8_1:22635503-22635522 | Msa1185440:intron | 25.0% |
| !!! | TAATTTGCACTTTTGTCTAA+GGG | - | chr8_1:22635504-22635523 | Msa1185440:intron | 25.0% |
| !!! | TTGTGTATAAGCTATTTCTA+TGG | - | chr8_1:22635528-22635547 | Msa1185440:intron | 25.0% |
| !!! | TGTGTATAAGCTATTTCTAT+GGG | - | chr8_1:22635529-22635548 | Msa1185440:intron | 25.0% |
| !!! | TTTGTTTTCATAAGCTATCT+TGG | - | chr8_1:22635578-22635597 | Msa1185440:intron | 25.0% |
| ! | AAACACTTGTAAGACTATTT+GGG | + | chr8_1:22635666-22635685 | None:intergenic | 25.0% |
| ! | AAAACACTTGTAAGACTATT+TGG | + | chr8_1:22635667-22635686 | None:intergenic | 25.0% |
| !! | ACATGTTTAGAAGATGTTTT+CGG | + | chr8_1:22635876-22635895 | None:intergenic | 25.0% |
| !! | AATTTTACACTAATGTCCAA+TGG | + | chr8_1:22636203-22636222 | None:intergenic | 25.0% |
| ! | ATGAATAAACTAGGAGAAAA+GGG | + | chr8_1:22636256-22636275 | None:intergenic | 25.0% |
| ! | ATGATCATCAATAAAACAGA+AGG | + | chr8_1:22637007-22637026 | None:intergenic | 25.0% |
| !! | TGTATTCAACAATTTTTCCA+TGG | - | chr8_1:22637060-22637079 | Msa1185440:intron | 25.0% |
| ! | AGAATAGGAAATGAAAATGT+AGG | - | chr8_1:22637160-22637179 | Msa1185440:intron | 25.0% |
| ! | AGGACAATATTCTCTTATAA+CGG | + | chr8_1:22637207-22637226 | None:intergenic | 25.0% |
| ! | ATGATCATCAATAAAACAGA+AGG | + | chr8_1:22637007-22637026 | None:intergenic | 25.0% |
| ! | AGAAATGAAAAAGTAGGAAA+TGG | - | chr8_1:22637392-22637411 | Msa1185440:intron | 25.0% |
| ! | GAAATGAAAAAGTAGGAAAT+GGG | - | chr8_1:22637393-22637412 | Msa1185440:intron | 25.0% |
| ! | AAATGAAAAAGTAGGAAATG+GGG | - | chr8_1:22637394-22637413 | Msa1185440:intron | 25.0% |
| !!! | CCGTTATAACTTTTAGTTTT+TGG | - | chr8_1:22637430-22637449 | Msa1185440:intron | 25.0% |
| !!! | ATTTCTTTTTAGCTTGTGAT+TGG | - | chr8_1:22637476-22637495 | Msa1185440:intron | 25.0% |
| ! | TTTGTGTTTCCTGATAAAAA+TGG | - | chr8_1:22637578-22637597 | Msa1185440:intron | 25.0% |
| ! | TATGCACAAAAAGAAAATCA+TGG | + | chr8_1:22637669-22637688 | None:intergenic | 25.0% |
| !!! | GTAATGTGTTTTGCTTTTTT+TGG | - | chr8_1:22637729-22637748 | Msa1185440:intron | 25.0% |
| ! | ATTTCACAATTAAACCAACT+TGG | + | chr8_1:22637796-22637815 | None:intergenic | 25.0% |
| !!! | GAGTATTATAGAGTTTTTTG+TGG | - | chr8_1:22637859-22637878 | Msa1185440:intron | 25.0% |
| !!! | CTTTTGACTTGTATTATTGT+TGG | - | chr8_1:22637975-22637994 | Msa1185440:intron | 25.0% |
| ! | TCACTTCAAGATTCATATAT+TGG | - | chr8_1:22638104-22638123 | Msa1185440:intron | 25.0% |
| ! | CACTTCAAGATTCATATATT+GGG | - | chr8_1:22638105-22638124 | Msa1185440:intron | 25.0% |
| ! | ACTTCAAGATTCATATATTG+GGG | - | chr8_1:22638106-22638125 | Msa1185440:intron | 25.0% |
| !! | TTTTCAAACTTGTGCAAAAT+AGG | + | chr8_1:22638331-22638350 | None:intergenic | 25.0% |
| !! | CTTTTTACAGCATATACATT+TGG | + | chr8_1:22638751-22638770 | None:intergenic | 25.0% |
| !!! | AATCATTTTTGCAAAGAAAC+TGG | + | chr8_1:22639227-22639246 | None:intergenic | 25.0% |
| ! | AAAAATGATTGATTGCCAAT+TGG | - | chr8_1:22639237-22639256 | Msa1185440:five_prime_UTR | 25.0% |
| !!! | GAAGTTAGGTTTTAGGTTTA+GGG | + | chr8_1:22635058-22635077 | None:intergenic | 30.0% |
| !!! | AGAAGTTAGGTTTTAGGTTT+AGG | + | chr8_1:22635059-22635078 | None:intergenic | 30.0% |
| !! | ATGGATGATTTTTCAGTTAG+AGG | - | chr8_1:22635172-22635191 | Msa1185440:CDS | 30.0% |
| CGAAAGAATACATACAAGAT+CGG | + | chr8_1:22635260-22635279 | None:intergenic | 30.0% | |
| AAAAGCAGCATTAGGATTAT+AGG | - | chr8_1:22635453-22635472 | Msa1185440:intron | 30.0% | |
| ! | AATTTGCACTTTTGTCTAAG+GGG | - | chr8_1:22635505-22635524 | Msa1185440:intron | 30.0% |
| ! | GTCTTACAAGTGTTTTATGT+CGG | - | chr8_1:22635671-22635690 | Msa1185440:intron | 30.0% |
| !!! | TGTTTTGGAACATTATAGAG+AGG | - | chr8_1:22635746-22635765 | Msa1185440:intron | 30.0% |
| TGTTTAATTAAGGGTGAGTT+TGG | - | chr8_1:22636075-22636094 | Msa1185440:intron | 30.0% | |
| TGATGATTTCTCAAAGATGT+CGG | + | chr8_1:22636152-22636171 | None:intergenic | 30.0% | |
| CATGAATAAACTAGGAGAAA+AGG | + | chr8_1:22636257-22636276 | None:intergenic | 30.0% | |
| ! | CTTTTCTCCTAGTTTATTCA+TGG | - | chr8_1:22636255-22636274 | Msa1185440:intron | 30.0% |
| ! | TAACCATAGACACTTTTGTA+AGG | - | chr8_1:22636297-22636316 | Msa1185440:intron | 30.0% |
| !! | AAACCTTACAAAAGTGTCTA+TGG | + | chr8_1:22636303-22636322 | None:intergenic | 30.0% |
| TTTCAACTTATTGAGAGCTT+AGG | - | chr8_1:22636385-22636404 | Msa1185440:intron | 30.0% | |
| GCAAAATTCTTGATACTCAT+TGG | - | chr8_1:22636590-22636609 | Msa1185440:CDS | 30.0% | |
| CACACATCATAAATGAGAAA+AGG | + | chr8_1:22636663-22636682 | None:intergenic | 30.0% | |
| ! | TTTTCAACTTATTTAGCGCT+TGG | - | chr8_1:22636734-22636753 | Msa1185440:intron | 30.0% |
| TTTCAACTTATTTAGCGCTT+GGG | - | chr8_1:22636735-22636754 | Msa1185440:intron | 30.0% | |
| CAATCTCTATAATCGAAGAT+GGG | + | chr8_1:22636801-22636820 | None:intergenic | 30.0% | |
| TCAATCTCTATAATCGAAGA+TGG | + | chr8_1:22636802-22636821 | None:intergenic | 30.0% | |
| ! | CAATAACTGCAAAATGCTTT+TGG | - | chr8_1:22636934-22636953 | Msa1185440:intron | 30.0% |
| GGAAATGAAAATGTAGGAAA+CGG | - | chr8_1:22637166-22637185 | Msa1185440:intron | 30.0% | |
| GAAATGAAAATGTAGGAAAC+GGG | - | chr8_1:22637167-22637186 | Msa1185440:intron | 30.0% | |
| AAATGAAAATGTAGGAAACG+GGG | - | chr8_1:22637168-22637187 | Msa1185440:intron | 30.0% | |
| !!! | TGTATTCAACACTTTTTCCA+TGG | - | chr8_1:22637280-22637299 | Msa1185440:intron | 30.0% |
| !!! | CTTTATTCCTTTGTTTTCGA+AGG | + | chr8_1:22637327-22637346 | None:intergenic | 30.0% |
| ! | TTTTGTATAGGTCAAAGAAG+TGG | - | chr8_1:22637514-22637533 | Msa1185440:intron | 30.0% |
| ! | TTACCTCTTGAACTTTGAAA+CGG | + | chr8_1:22637604-22637623 | None:intergenic | 30.0% |
| !! | AAAGAGTTTCATTTTCTGGT+AGG | + | chr8_1:22638258-22638277 | None:intergenic | 30.0% |
| ! | GAGAAAAGAGTTTCATTTTC+TGG | + | chr8_1:22638262-22638281 | None:intergenic | 30.0% |
| ! | GGTTATTATTAAGGTGCTAA+AGG | + | chr8_1:22638433-22638452 | None:intergenic | 30.0% |
| ! | GGAATGTTATTGCTGTTAAT+CGG | - | chr8_1:22638486-22638505 | Msa1185440:intron | 30.0% |
| ! | ATCTTACTTGCTAACTTACT+GGG | - | chr8_1:22638604-22638623 | Msa1185440:intron | 30.0% |
| ACTATATTGACAGTAACCAA+AGG | + | chr8_1:22638719-22638738 | None:intergenic | 30.0% | |
| GATTGCAACTTACAAAAGAT+AGG | + | chr8_1:22638818-22638837 | None:intergenic | 30.0% | |
| TGCAATCAAGTAACAAAGAT+AGG | + | chr8_1:22638877-22638896 | None:intergenic | 30.0% | |
| ! | CAATGTAACTTTGTTGTGTT+TGG | - | chr8_1:22639100-22639119 | Msa1185440:intron | 30.0% |
| TTCCTATCTTAGTCAACACA+CGG | + | chr8_1:22635141-22635160 | None:intergenic | 35.0% | |
| AAACTCAACACACAACTATG+AGG | + | chr8_1:22635397-22635416 | None:intergenic | 35.0% | |
| AGTTGTGTGTTGAGTTTAAG+TGG | - | chr8_1:22635400-22635419 | Msa1185440:intron | 35.0% | |
| !!! | ATGCTGCTTTTTCTTTTGGT+CGG | + | chr8_1:22635444-22635463 | None:intergenic | 35.0% |
| !!! | CCTAATGCTGCTTTTTCTTT+TGG | + | chr8_1:22635448-22635467 | None:intergenic | 35.0% |
| CCAAAAGAAAAAGCAGCATT+AGG | - | chr8_1:22635445-22635464 | Msa1185440:intron | 35.0% | |
| ! | GTTTTCATAAGCTATCTTGG+AGG | - | chr8_1:22635581-22635600 | Msa1185440:intron | 35.0% |
| TCGGTAAATAAGCTCAAGTA+AGG | - | chr8_1:22635690-22635709 | Msa1185440:intron | 35.0% | |
| ATAGGTCCTTAGAGCATATT+TGG | - | chr8_1:22635720-22635739 | Msa1185440:intron | 35.0% | |
| TAGGTCCTTAGAGCATATTT+GGG | - | chr8_1:22635721-22635740 | Msa1185440:intron | 35.0% | |
| ACAATCCCAAATATGCTCTA+AGG | + | chr8_1:22635729-22635748 | None:intergenic | 35.0% | |
| !! | GAGCATATTTGGGATTGTTT+TGG | - | chr8_1:22635731-22635750 | Msa1185440:intron | 35.0% |
| ATTATAGAGAGGCTTATGAC+AGG | - | chr8_1:22635757-22635776 | Msa1185440:intron | 35.0% | |
| TCAAATAAGCCAATCGAAAC+AGG | - | chr8_1:22635960-22635979 | Msa1185440:intron | 35.0% | |
| AGCTCACTTTGTAATTCCAT+TGG | - | chr8_1:22636184-22636203 | Msa1185440:intron | 35.0% | |
| AAAACTCGAACATCATTCCA+TGG | + | chr8_1:22637080-22637099 | None:intergenic | 35.0% | |
| AAACTCAGAACATCATTCCA+TGG | + | chr8_1:22637300-22637319 | None:intergenic | 35.0% | |
| ! | TTTTGAGCCTTCGAAAACAA+AGG | - | chr8_1:22637317-22637336 | Msa1185440:intron | 35.0% |
| !!! | TTGAAACGGCCATTTTTATC+AGG | + | chr8_1:22637590-22637609 | None:intergenic | 35.0% |
| CAAAAAATTGCACACAGAAG+CGG | + | chr8_1:22637921-22637940 | None:intergenic | 35.0% | |
| ! | GGAAAAAGACTAGTTAAGTG+TGG | + | chr8_1:22638031-22638050 | None:intergenic | 35.0% |
| !!! | TTAACTAGTCTTTTTCCCAG+TGG | - | chr8_1:22638034-22638053 | Msa1185440:intron | 35.0% |
| ACTGTAATCGAGTATCATTC+TGG | - | chr8_1:22638394-22638413 | Msa1185440:intron | 35.0% | |
| ! | AAAGTGGATCCCTCATTTTA+GGG | + | chr8_1:22638454-22638473 | None:intergenic | 35.0% |
| ! | TAAAGTGGATCCCTCATTTT+AGG | + | chr8_1:22638455-22638474 | None:intergenic | 35.0% |
| CAGTAAGTTAGCAAGTAAGA+TGG | + | chr8_1:22638605-22638624 | None:intergenic | 35.0% | |
| ! | CATCTTACTTGCTAACTTAC+TGG | - | chr8_1:22638603-22638622 | Msa1185440:intron | 35.0% |
| !! | TTTCAATGCTTTGAGGTAAG+GGG | + | chr8_1:22638685-22638704 | None:intergenic | 35.0% |
| !! | GTTTCAATGCTTTGAGGTAA+GGG | + | chr8_1:22638686-22638705 | None:intergenic | 35.0% |
| GTTACTTGATTGCACTATGA+AGG | - | chr8_1:22638883-22638902 | Msa1185440:CDS | 35.0% | |
| AAGACATTGTCTTATGGAAC+TGG | - | chr8_1:22638911-22638930 | Msa1185440:CDS | 35.0% | |
| CTTTACCTCAAAACCAAGAT+CGG | + | chr8_1:22638963-22638982 | None:intergenic | 35.0% | |
| !! | TTGTTTTTCAATGCGCAGAT+TGG | - | chr8_1:22639034-22639053 | Msa1185440:intron | 35.0% |
| ! | GATGATGGTCTTCAAACATT+TGG | - | chr8_1:22639137-22639156 | Msa1185440:CDS | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | + | chr8_1:22639272-22639291 | None:intergenic | 35.0% | |
| GATAGGAAGCCATCATTCAA+TGG | - | chr8_1:22635153-22635172 | Msa1185440:intron | 40.0% | |
| CACGGACACATGATTCTAAT+TGG | + | chr8_1:22635326-22635345 | None:intergenic | 40.0% | |
| AGCCTAACAATATCGTGACA+CGG | + | chr8_1:22635344-22635363 | None:intergenic | 40.0% | |
| AACACACAACTATGAGGTTC+TGG | + | chr8_1:22635391-22635410 | None:intergenic | 40.0% | |
| CTCAAGTAAGGCGATACTAT+AGG | - | chr8_1:22635702-22635721 | Msa1185440:intron | 40.0% | |
| CAGGACCTTAGAGCATATTT+CGG | - | chr8_1:22635776-22635795 | Msa1185440:intron | 40.0% | |
| ACAGTCCGAAATATGCTCTA+AGG | + | chr8_1:22635784-22635803 | None:intergenic | 40.0% | |
| ! | GAGCATATTTCGGACTGTTT+TGG | - | chr8_1:22635786-22635805 | Msa1185440:intron | 40.0% |
| ! | ACACTTCTGAGAGACTGTTT+GGG | + | chr8_1:22635922-22635941 | None:intergenic | 40.0% |
| ! | AACACTTCTGAGAGACTGTT+TGG | + | chr8_1:22635923-22635942 | None:intergenic | 40.0% |
| !! | CTCTCAGAAGTGTTAATGTC+AGG | - | chr8_1:22635929-22635948 | Msa1185440:intron | 40.0% |
| !! | TCAGAAGTGTTAATGTCAGG+AGG | - | chr8_1:22635932-22635951 | Msa1185440:intron | 40.0% |
| ATGTATCTTAAGCGCTTTCC+TGG | - | chr8_1:22636492-22636511 | Msa1185440:intron | 40.0% | |
| AGCTTCTGTCGCAATATTAG+GGG | + | chr8_1:22636524-22636543 | None:intergenic | 40.0% | |
| GAGCTTCTGTCGCAATATTA+GGG | + | chr8_1:22636525-22636544 | None:intergenic | 40.0% | |
| TGAGCTTCTGTCGCAATATT+AGG | + | chr8_1:22636526-22636545 | None:intergenic | 40.0% | |
| AGGTAAATCTTCTCTCTACG+TGG | - | chr8_1:22637618-22637637 | Msa1185440:intron | 40.0% | |
| ATGGCAGTAACAAGAGTGAT+AGG | + | chr8_1:22637650-22637669 | None:intergenic | 40.0% | |
| ! | TTGGTAATCTGCGCATTACT+AGG | - | chr8_1:22637829-22637848 | Msa1185440:intron | 40.0% |
| TGGTAATCTGCGCATTACTA+GGG | - | chr8_1:22637830-22637849 | Msa1185440:intron | 40.0% | |
| GCTAAGTGAAATGCACTCAT+TGG | - | chr8_1:22638370-22638389 | Msa1185440:intron | 40.0% | |
| AAATGAGGGATCCACTTTAG+AGG | - | chr8_1:22638456-22638475 | Msa1185440:intron | 40.0% | |
| AATGAGGGATCCACTTTAGA+GGG | - | chr8_1:22638457-22638476 | Msa1185440:intron | 40.0% | |
| ! | ATCCACTTTAGAGGGAAAAC+AGG | - | chr8_1:22638465-22638484 | Msa1185440:intron | 40.0% |
| !! | TTCCTGTTTTCCCTCTAAAG+TGG | + | chr8_1:22638470-22638489 | None:intergenic | 40.0% |
| !! | GGTTTCAATGCTTTGAGGTA+AGG | + | chr8_1:22638687-22638706 | None:intergenic | 40.0% |
| !! | CTCAAAGCATTGAAACCCTA+CGG | - | chr8_1:22638690-22638709 | Msa1185440:intron | 40.0% |
| ACTTGATTGCACTATGAAGG+TGG | - | chr8_1:22638886-22638905 | Msa1185440:CDS | 40.0% | |
| CTTGATTGCACTATGAAGGT+GGG | - | chr8_1:22638887-22638906 | Msa1185440:CDS | 40.0% | |
| GGAACTGGAAGATTAGATGA+TGG | - | chr8_1:22638926-22638945 | Msa1185440:CDS | 40.0% | |
| ! | TGGAAGATTAGATGATGGCA+AGG | - | chr8_1:22638931-22638950 | Msa1185440:CDS | 40.0% |
| !!! | TTTAGCCGATCTTGGTTTTG+AGG | - | chr8_1:22638955-22638974 | Msa1185440:CDS | 40.0% |
| ! | GATTGGTGATTACTTGGATG+TGG | - | chr8_1:22639051-22639070 | Msa1185440:intron | 40.0% |
| TTTGAAGACCATCATCACAC+AGG | + | chr8_1:22639133-22639152 | None:intergenic | 40.0% | |
| AGTCTCGAAGAAATGAGCGA+CGG | - | chr8_1:22634912-22634931 | Msa1185440:three_prime_UTR | 45.0% | |
| ! | AGTACCTTTTCGCGATCAAC+TGG | + | chr8_1:22635020-22635039 | None:intergenic | 45.0% |
| CTATCTTAGTCAACACACGG+AGG | + | chr8_1:22635138-22635157 | None:intergenic | 45.0% | |
| !! | CTCCGTGTGTTGACTAAGAT+AGG | - | chr8_1:22635136-22635155 | Msa1185440:intron | 45.0% |
| GTCCGTGTCACGATATTGTT+AGG | - | chr8_1:22635339-22635358 | Msa1185440:intron | 45.0% | |
| GTGTCACGATATTGTTAGGC+TGG | - | chr8_1:22635343-22635362 | Msa1185440:intron | 45.0% | |
| !! | TGAGGTTCTGGATTCGAACA+CGG | + | chr8_1:22635379-22635398 | None:intergenic | 45.0% |
| !!! | CTGCTTTTTCTTTTGGTCGG+TGG | + | chr8_1:22635441-22635460 | None:intergenic | 45.0% |
| ACAGGTGCTTGGAGCATATT+TGG | - | chr8_1:22635978-22635997 | Msa1185440:intron | 45.0% | |
| CAGGTGCTTGGAGCATATTT+GGG | - | chr8_1:22635979-22635998 | Msa1185440:intron | 45.0% | |
| TCTGTCGCAATATTAGGGGA+GGG | + | chr8_1:22636520-22636539 | None:intergenic | 45.0% | |
| TTCTGTCGCAATATTAGGGG+AGG | + | chr8_1:22636521-22636540 | None:intergenic | 45.0% | |
| GCCTTGAACAACTTCTGTCA+GGG | + | chr8_1:22636965-22636984 | None:intergenic | 45.0% | |
| AGCCTTGAACAACTTCTGTC+AGG | + | chr8_1:22636966-22636985 | None:intergenic | 45.0% | |
| TGGCCGTTTCAAAGTTCAAG+AGG | - | chr8_1:22637598-22637617 | Msa1185440:intron | 45.0% | |
| CAGTAACAAGAGTGATAGGC+AGG | + | chr8_1:22637646-22637665 | None:intergenic | 45.0% | |
| CCAACTTGGCATGTCATTAG+TGG | + | chr8_1:22637782-22637801 | None:intergenic | 45.0% | |
| CCACTAATGACATGCCAAGT+TGG | - | chr8_1:22637779-22637798 | Msa1185440:intron | 45.0% | |
| ATGCTCTGTTCTGTTCCACT+GGG | + | chr8_1:22638052-22638071 | None:intergenic | 45.0% | |
| !! | AATGCTTTGAGGTAAGGGGT+GGG | + | chr8_1:22638681-22638700 | None:intergenic | 45.0% |
| CGTAGGGTTTCAATGCTTTG+AGG | + | chr8_1:22638692-22638711 | None:intergenic | 45.0% | |
| AGTAACCAAAGGTTGCCGTA+GGG | + | chr8_1:22638708-22638727 | None:intergenic | 45.0% | |
| GTGGGCAAGACATTGTCTTA+TGG | - | chr8_1:22638905-22638924 | Msa1185440:CDS | 45.0% | |
| ! | TGCGCAGATTGGTGATTACT+TGG | - | chr8_1:22639045-22639064 | Msa1185440:intron | 45.0% |
| AAGTGGTACTGCTGACCAAT+TGG | + | chr8_1:22639255-22639274 | None:intergenic | 45.0% | |
| GCAGTACCACTTAAGCTGAA+AGG | - | chr8_1:22639263-22639282 | Msa1185440:five_prime_UTR | 45.0% | |
| CGAACCAGTTGATCGCGAAA+AGG | - | chr8_1:22635013-22635032 | Msa1185440:three_prime_UTR | 50.0% | |
| !! | GAGGTTCTGGATTCGAACAC+GGG | + | chr8_1:22635378-22635397 | None:intergenic | 50.0% |
| AGCCAATCGAAACAGGTGCT+TGG | - | chr8_1:22635967-22635986 | Msa1185440:intron | 50.0% | |
| CTCCAAGCACCTGTTTCGAT+TGG | + | chr8_1:22635972-22635991 | None:intergenic | 50.0% | |
| ! | CTAGGAGAAAAGGGCACATG+TGG | + | chr8_1:22636247-22636266 | None:intergenic | 50.0% |
| CTGTCGCAATATTAGGGGAG+GGG | + | chr8_1:22636519-22636538 | None:intergenic | 50.0% | |
| GCCCTGACAGAAGTTGTTCA+AGG | - | chr8_1:22636961-22636980 | Msa1185440:intron | 50.0% | |
| GCGTTTCTTCTTCTTGCAGC+AGG | + | chr8_1:22637542-22637561 | None:intergenic | 50.0% | |
| CATGCTCTGTTCTGTTCCAC+TGG | + | chr8_1:22638053-22638072 | None:intergenic | 50.0% | |
| !! | ATGCTTTGAGGTAAGGGGTG+GGG | + | chr8_1:22638680-22638699 | None:intergenic | 50.0% |
| !! | CAATGCTTTGAGGTAAGGGG+TGG | + | chr8_1:22638682-22638701 | None:intergenic | 50.0% |
| TGAAACCCTACGGCAACCTT+TGG | - | chr8_1:22638700-22638719 | Msa1185440:intron | 50.0% | |
| CAGTAACCAAAGGTTGCCGT+AGG | + | chr8_1:22638709-22638728 | None:intergenic | 50.0% | |
| CTCGAAGAAATGAGCGACGG+AGG | - | chr8_1:22634915-22634934 | Msa1185440:three_prime_UTR | 55.0% | |
| GACGGAGGACCAAAACGACA+AGG | - | chr8_1:22634930-22634949 | Msa1185440:three_prime_UTR | 55.0% | |
| GGAGGACCAAAACGACAAGG+CGG | - | chr8_1:22634933-22634952 | Msa1185440:three_prime_UTR | 55.0% | |
| !! | CCTCTTGGTGGTGGAGGTAA+TGG | + | chr8_1:22634963-22634982 | None:intergenic | 55.0% |
| CCATTACCTCCACCACCAAG+AGG | - | chr8_1:22634960-22634979 | Msa1185440:three_prime_UTR | 55.0% | |
| !! | AACTGGTTCGAGACGAGGAC+GGG | + | chr8_1:22635003-22635022 | None:intergenic | 55.0% |
| !! | CAACTGGTTCGAGACGAGGA+CGG | + | chr8_1:22635004-22635023 | None:intergenic | 55.0% |
| !! | CGATCAACTGGTTCGAGACG+AGG | + | chr8_1:22635008-22635027 | None:intergenic | 55.0% |
| TCAACACACGGAGGAGCAAG+GGG | + | chr8_1:22635129-22635148 | None:intergenic | 55.0% | |
| GTCAACACACGGAGGAGCAA+GGG | + | chr8_1:22635130-22635149 | None:intergenic | 55.0% | |
| AGTCAACACACGGAGGAGCA+AGG | + | chr8_1:22635131-22635150 | None:intergenic | 55.0% | |
| CTGGATTCGAACACGGGTCT+AGG | + | chr8_1:22635372-22635391 | None:intergenic | 55.0% | |
| CAATATTAGGGGAGGGGTCC+AGG | + | chr8_1:22636513-22636532 | None:intergenic | 55.0% | |
| CTGCGCATTACTAGGGAGTG+TGG | - | chr8_1:22637837-22637856 | Msa1185440:intron | 55.0% | |
| ! | GGCAAGGCTTTAGCCGATCT+TGG | - | chr8_1:22638947-22638966 | Msa1185440:CDS | 55.0% |
| ! | GTGCTGCTCCTGTGTGATGA+TGG | - | chr8_1:22639122-22639141 | Msa1185440:CDS | 55.0% |
| !! | GGTCTGCCGCCTTGTCGTTT+TGG | + | chr8_1:22634942-22634961 | None:intergenic | 60.0% |
| ATGCAGTCGCGACACGGTTG+TGG | + | chr8_1:22637895-22637914 | None:intergenic | 60.0% | |
| CGGCTAATGCAGTCGCGACA+CGG | + | chr8_1:22637901-22637920 | None:intergenic | 60.0% | |
| GATGGAGGAGGCGGACCTCT+TGG | + | chr8_1:22634978-22634997 | None:intergenic | 65.0% | |
| AGACGAGGACGGGAGGATGG+AGG | + | chr8_1:22634993-22635012 | None:intergenic | 65.0% | |
| TCGAGACGAGGACGGGAGGA+TGG | + | chr8_1:22634996-22635015 | None:intergenic | 65.0% | |
| TGGTTCGAGACGAGGACGGG+AGG | + | chr8_1:22635000-22635019 | None:intergenic | 65.0% | |
| GGAGGAGCAAGGGGCAAGTC+TGG | + | chr8_1:22635120-22635139 | None:intergenic | 65.0% | |
| CGCGACACGGTTGTGGAGAG+TGG | + | chr8_1:22637888-22637907 | None:intergenic | 65.0% | |
| !! | GGCGGACCTCTTGGTGGTGG+AGG | + | chr8_1:22634969-22634988 | None:intergenic | 70.0% |
| GGAGGCGGACCTCTTGGTGG+TGG | + | chr8_1:22634972-22634991 | None:intergenic | 70.0% | |
| GGAGGAGGCGGACCTCTTGG+TGG | + | chr8_1:22634975-22634994 | None:intergenic | 70.0% | |
| GGACGGGAGGATGGAGGAGG+CGG | + | chr8_1:22634987-22635006 | None:intergenic | 70.0% | |
| CGAGGACGGGAGGATGGAGG+AGG | + | chr8_1:22634990-22635009 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 22634853 | 22639294 | 22634853 | ID=Msa1185440;Name=Msa1185440 |
| chr8_1 | mRNA | 22634853 | 22639294 | 22634853 | ID=Msa1185440-mRNA-1;Parent=Msa1185440;Name=Msa1185440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=71|1|1|1|1|1|5|210|151 |
| chr8_1 | exon | 22634853 | 22635095 | 22634853 | ID=Msa1185440-mRNA-1:exon:8339;Parent=Msa1185440-mRNA-1 |
| chr8_1 | exon | 22635171 | 22635242 | 22635171 | ID=Msa1185440-mRNA-1:exon:8338;Parent=Msa1185440-mRNA-1 |
| chr8_1 | exon | 22636528 | 22636623 | 22636528 | ID=Msa1185440-mRNA-1:exon:8337;Parent=Msa1185440-mRNA-1 |
| chr8_1 | exon | 22638883 | 22639026 | 22638883 | ID=Msa1185440-mRNA-1:exon:8336;Parent=Msa1185440-mRNA-1 |
| chr8_1 | exon | 22639113 | 22639294 | 22639113 | ID=Msa1185440-mRNA-1:exon:8335;Parent=Msa1185440-mRNA-1 |
| chr8_1 | five_prime_UTR | 22639224 | 22639294 | 22639224 | ID=Msa1185440-mRNA-1:five_prime_utr;Parent=Msa1185440-mRNA-1 |
| chr8_1 | CDS | 22639113 | 22639223 | 22639113 | ID=Msa1185440-mRNA-1:cds;Parent=Msa1185440-mRNA-1 |
| chr8_1 | CDS | 22638883 | 22639026 | 22638883 | ID=Msa1185440-mRNA-1:cds;Parent=Msa1185440-mRNA-1 |
| chr8_1 | CDS | 22636528 | 22636623 | 22636528 | ID=Msa1185440-mRNA-1:cds;Parent=Msa1185440-mRNA-1 |
| chr8_1 | CDS | 22635171 | 22635242 | 22635171 | ID=Msa1185440-mRNA-1:cds;Parent=Msa1185440-mRNA-1 |
| chr8_1 | CDS | 22635063 | 22635095 | 22635063 | ID=Msa1185440-mRNA-1:cds;Parent=Msa1185440-mRNA-1 |
| chr8_1 | three_prime_UTR | 22634853 | 22635062 | 22634853 | ID=Msa1185440-mRNA-1:three_prime_utr;Parent=Msa1185440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
