AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1173900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1173900 MtrunA17_Chr8g0349271 96.040 202 6 1 1 202 1 200 4.61e-131 366
Msa1173900 MtrunA17_Chr1g0203401 57.812 192 68 3 24 202 18 209 8.82e-60 186
Msa1173900 MtrunA17_Chr5g0397781 59.836 122 49 0 81 202 86 207 3.60e-44 146
Msa1173900 MtrunA17_Chr8g0386521 41.848 184 106 1 19 202 16 198 2.19e-41 139
Msa1173900 MtrunA17_Chr7g0247121 64.615 65 23 0 138 202 34 98 1.77e-26 97.4
Msa1173900 MtrunA17_Chr1g0173571 31.148 122 84 0 76 197 148 269 2.78e-12 63.9
Msa1173900 MtrunA17_Chr1g0153281 32.743 113 75 1 90 202 504 615 3.76e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1173900 AT3G61260.1 62.424 165 58 3 42 202 48 212 5.05e-62 192
Msa1173900 AT5G23750.2 51.942 206 90 4 1 202 1 201 2.05e-56 177
Msa1173900 AT3G48940.1 58.784 148 61 0 55 202 28 175 2.80e-56 176
Msa1173900 AT5G23750.1 52.577 194 90 2 9 202 11 202 3.20e-54 172
Msa1173900 AT5G23750.3 52.577 194 90 2 9 202 38 229 8.87e-54 172
Msa1173900 AT2G45820.1 55.340 206 72 6 1 202 1 190 8.12e-53 168
Msa1173900 AT1G63295.1 43.802 121 65 2 85 202 31 151 9.23e-23 90.1
Msa1173900 AT1G63295.2 43.802 121 65 2 85 202 71 191 1.94e-22 90.1
Msa1173900 AT4G00670.1 42.991 107 60 1 97 202 17 123 3.60e-22 87.4
Msa1173900 AT1G30320.1 37.037 108 64 1 99 202 401 508 1.62e-11 62.8

Find 67 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTGTGAGTGTAAAATTTA+TGG 0.135936 8_1:+4618305 Msa1173900:three_prime_UTR
AGAGAGAGAGAAGAAGTTTA+AGG 0.181430 8_1:-4614117 None:intergenic
GATATCGCTCTTGCAGAAAT+AGG 0.196780 8_1:+4616816 Msa1173900:intron
TATAGACAAAATTTCATAAT+TGG 0.216142 8_1:-4618245 None:intergenic
AAGCATCCAAGGAGTTTCTT+TGG 0.246919 8_1:-4618206 None:intergenic
TTCTTACTTATTCTCTGCTT+TGG 0.294744 8_1:-4616889 None:intergenic
TGGACAGCACAAAGGATCTT+TGG 0.335191 8_1:+4618356 Msa1173900:three_prime_UTR
GAACTGCTTCTTGCTTGGTT+TGG 0.343276 8_1:-4614215 None:intergenic
AACACTTTGGCAGGAGCAAT+TGG 0.362647 8_1:+4618025 Msa1173900:intron
GCCGGTGCCGGTGCCGGAGC+AGG 0.362701 8_1:-4614243 None:intergenic
TCAGCCATAGGTTCTGAGTT+TGG 0.377593 8_1:-4614189 None:intergenic
GCTCTCTACTGTTGCTGCTT+GGG 0.383440 8_1:+4617220 Msa1173900:CDS
AGCAGGAACTGCTTCTTGCT+TGG 0.401159 8_1:-4614220 None:intergenic
GGTTCAACGGCAGCAGGAGC+TGG 0.411760 8_1:-4614279 None:intergenic
ATGAAAGGAAATTTAGAAGT+AGG 0.417031 8_1:-4618534 None:intergenic
ATATCGCTCTTGCAGAAATA+GGG 0.417625 8_1:+4616817 Msa1173900:CDS
ACAATGTATAGTTGGTAGAT+TGG 0.429592 8_1:-4618585 None:intergenic
ACTGGTGCCGGTGCCGGTGC+CGG 0.449249 8_1:-4614249 None:intergenic
TCCTGCTCCTGCTCCGGCAC+CGG 0.451400 8_1:+4614236 Msa1173900:CDS
GCAGGAGCTGGAGTTGGAAC+TGG 0.452399 8_1:-4614267 None:intergenic
GCCGGTGCCGGAGCAGGAGC+AGG 0.453467 8_1:-4614237 None:intergenic
AGCTCTCTACTGTTGCTGCT+TGG 0.453757 8_1:+4617219 Msa1173900:CDS
TCCTGCTCCGGCACCGGCAC+CGG 0.454103 8_1:+4614242 Msa1173900:CDS
ACCTCTAGCTGAGGCACCTC+CGG 0.458768 8_1:+4614302 Msa1173900:CDS
GCTGCAAAACATAATGCAAC+AGG 0.462965 8_1:+4618176 Msa1173900:CDS
GTTGGAACTGGTGCCGGTGC+CGG 0.472287 8_1:-4614255 None:intergenic
CAGAAATAGGGAAAGAGAAA+AGG 0.476722 8_1:+4616829 Msa1173900:CDS
GTGTCATCTGCCGCAGGTGG+CGG 0.477296 8_1:-4614354 None:intergenic
AGAGGTGGTTCAACGGCAGC+AGG 0.490625 8_1:-4614285 None:intergenic
TATGGAAAGGGAAAATACAT+TGG 0.495218 8_1:+4618323 Msa1173900:three_prime_UTR
ACTGTTCCAAAGAAACTCCT+TGG 0.505361 8_1:+4618200 Msa1173900:CDS
AGCAGTTCCTGCTCCTGCTC+CGG 0.505398 8_1:+4614230 Msa1173900:CDS
AACAAGACTAACCTCTATCA+AGG 0.505662 8_1:-4616276 None:intergenic
AAGAATGCATCCCTTGATAG+AGG 0.508900 8_1:+4616265 Msa1173900:CDS
AGCAGCGGCACCGCCACCTG+CGG 0.508970 8_1:+4614344 Msa1173900:CDS
GGTTATCTAATGTGAAGGCA+TGG 0.509564 8_1:+4616850 Msa1173900:CDS
TTGGTTTGGAGTTCAGCCAT+AGG 0.510361 8_1:-4614201 None:intergenic
TGAACCAAACTCAGAACCTA+TGG 0.524051 8_1:+4614185 Msa1173900:exon
GCTGGAGTTGGAACTGGTGC+CGG 0.528799 8_1:-4614261 None:intergenic
ACGGCAGCAGGAGCTGGAGT+TGG 0.534821 8_1:-4614273 None:intergenic
AATCAAGAACAAGGTGGCAA+TGG 0.536099 8_1:+4618076 Msa1173900:CDS
CATCATATCAAAAGCATCCA+AGG 0.539784 8_1:-4618217 None:intergenic
GAGTGTAAAATTTATGGAAA+GGG 0.545883 8_1:+4618311 Msa1173900:three_prime_UTR
GCCTTTGTGTCATCTGCCGC+AGG 0.563039 8_1:-4614360 None:intergenic
CACAAAGGCACTTGTTGTTG+TGG 0.563137 8_1:+4614374 Msa1173900:CDS
GTTATCTAATGTGAAGGCAT+GGG 0.574842 8_1:+4616851 Msa1173900:CDS
GGAAAGGGAAAATACATTGG+AGG 0.579726 8_1:+4618326 Msa1173900:three_prime_UTR
GAAAAGGTTATCTAATGTGA+AGG 0.581637 8_1:+4616845 Msa1173900:CDS
CTCAGCTAGAGGTGGTTCAA+CGG 0.595513 8_1:-4614292 None:intergenic
ACCGGAGGTGCCTCAGCTAG+AGG 0.598498 8_1:-4614303 None:intergenic
TGAAGCAATTCTCAAGGCAG+AGG 0.599324 8_1:+4618148 Msa1173900:CDS
TAGTGGAAAGAATCAATGAA+AGG 0.599628 8_1:-4618549 None:intergenic
AATACATTGGAGGAACATGT+TGG 0.602186 8_1:+4618336 Msa1173900:three_prime_UTR
ACGTGCTGAAGCAATTCTCA+AGG 0.603219 8_1:+4618142 Msa1173900:CDS
TGAGTGTAAAATTTATGGAA+AGG 0.610551 8_1:+4618310 Msa1173900:three_prime_UTR
TTGGTTGTGTAATAATGTAG+TGG 0.621475 8_1:-4618566 None:intergenic
ACAAGACTAACCTCTATCAA+GGG 0.621639 8_1:-4616275 None:intergenic
AGATCAACAAAGAACTTGTG+TGG 0.634370 8_1:-4614039 None:intergenic
TTTGTGTCATCTGCCGCAGG+TGG 0.638483 8_1:-4614357 None:intergenic
TGGTGAGAAAATCAAGAACA+AGG 0.641835 8_1:+4618067 Msa1173900:CDS
AATGGTTCACAAACAAGCAG+AGG 0.652178 8_1:+4618094 Msa1173900:CDS
TGCTGTTGAAAAGAAAGCAG+CGG 0.654918 8_1:+4614329 Msa1173900:CDS
CGTTGAACCACCTCTAGCTG+AGG 0.656582 8_1:+4614293 Msa1173900:CDS
ACCTGCGGCAGATGACACAA+AGG 0.679211 8_1:+4614359 Msa1173900:CDS
GGAGGTGCCTCAGCTAGAGG+TGG 0.679539 8_1:-4614300 None:intergenic
GAACATGTTGGACAGCACAA+AGG 0.681756 8_1:+4618348 Msa1173900:three_prime_UTR
TGAGAAAATCAAGAACAAGG+TGG 0.758003 8_1:+4618070 Msa1173900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTGATAAGATT+CGG - chr8_1:4615639-4615658 None:intergenic 10.0%
!!! ATACATTTTTTTTTTTTTGA+GGG - chr8_1:4616157-4616176 None:intergenic 10.0%
!!! AATACATTTTTTTTTTTTTG+AGG - chr8_1:4616158-4616177 None:intergenic 10.0%
!!! TAATTGCATAAAAATATTTT+AGG + chr8_1:4616964-4616983 Msa1173900:intron 10.0%
!!! AATTGCATAAAAATATTTTA+GGG + chr8_1:4616965-4616984 Msa1173900:intron 10.0%
!!! TATTATTATTGATTAAAAGA+TGG + chr8_1:4617333-4617352 Msa1173900:intron 10.0%
!! AATTACTATATAAAAACTAT+TGG + chr8_1:4618419-4618438 Msa1173900:three_prime_UTR 10.0%
!! ATTACTATATAAAAACTATT+GGG + chr8_1:4618420-4618439 Msa1173900:three_prime_UTR 10.0%
!!! AAAATCCATAATTATTTTTC+AGG - chr8_1:4614738-4614757 None:intergenic 15.0%
!!! ATAATTCTGATATATGTTTT+TGG + chr8_1:4614842-4614861 Msa1173900:intron 15.0%
!!! TAATTCTGATATATGTTTTT+GGG + chr8_1:4614843-4614862 Msa1173900:intron 15.0%
!! AACCTAACTAAATATATAAA+AGG + chr8_1:4615196-4615215 Msa1173900:intron 15.0%
!!! TCCATAATAATTATTCTTTT+AGG + chr8_1:4615402-4615421 Msa1173900:intron 15.0%
!! TCCTAAAAGAATAATTATTA+TGG - chr8_1:4615406-4615425 None:intergenic 15.0%
!! TAATGAAAATCACTTTAATT+TGG - chr8_1:4615928-4615947 None:intergenic 15.0%
!!! AATATTTTGAAATCAGTTTA+AGG - chr8_1:4615954-4615973 None:intergenic 15.0%
!! GTTAATATCAAATATCAATA+AGG - chr8_1:4616335-4616354 None:intergenic 15.0%
!!! TTTTGAGTAAATATCTAAAA+TGG - chr8_1:4617052-4617071 None:intergenic 15.0%
!! TGTTTAATATCCTAAAATTT+AGG + chr8_1:4617163-4617182 Msa1173900:intron 15.0%
!! GTTTAATATCCTAAAATTTA+GGG + chr8_1:4617164-4617183 Msa1173900:intron 15.0%
!!! AAGATAAAGATAAGATTTTA+TGG + chr8_1:4617436-4617455 Msa1173900:intron 15.0%
!!! AATTAAATTTTTGAACACTT+TGG + chr8_1:4618012-4618031 Msa1173900:intron 15.0%
!! TATAGACAAAATTTCATAAT+TGG - chr8_1:4618248-4618267 None:intergenic 15.0%
!!! TATTTTCTCTAAAGTATTTA+AGG - chr8_1:4618475-4618494 None:intergenic 15.0%
!!! GAATTCCTTCTTTAATTTTT+TGG + chr8_1:4614416-4614435 Msa1173900:intron 20.0%
!! AAAAGCCAAAAAATTAAAGA+AGG - chr8_1:4614424-4614443 None:intergenic 20.0%
!!! CAAAATTCAGTTTTTACAAT+TGG + chr8_1:4614463-4614482 Msa1173900:intron 20.0%
!! AGTGAAAATTAATGAAAGTA+TGG + chr8_1:4614532-4614551 Msa1173900:intron 20.0%
!!! TTTGAGTTAATTTGAATTGT+TGG + chr8_1:4614637-4614656 Msa1173900:intron 20.0%
!!! TTGAATATACTATTGATTCA+TGG + chr8_1:4614660-4614679 Msa1173900:intron 20.0%
!!! GTTTTCCTGAAAAATAATTA+TGG + chr8_1:4614730-4614749 Msa1173900:intron 20.0%
!!! AGAATCATTTTTGTATGAAT+TGG + chr8_1:4614899-4614918 Msa1173900:intron 20.0%
!!! GAATCATTTTTGTATGAATT+GGG + chr8_1:4614900-4614919 Msa1173900:intron 20.0%
!! ACCATAACTAATAATTGAAA+AGG - chr8_1:4615031-4615050 None:intergenic 20.0%
!!! TTATATATTTAGTTAGGTTG+AGG - chr8_1:4615195-4615214 None:intergenic 20.0%
!!! GACCTTTTATATATTTAGTT+AGG - chr8_1:4615201-4615220 None:intergenic 20.0%
!!! AAGACAATGTATAATTTTCT+AGG - chr8_1:4615701-4615720 None:intergenic 20.0%
!! AATATATCTCTCATATCATT+AGG + chr8_1:4615775-4615794 Msa1173900:intron 20.0%
!! ATAGAACAAGAAATGATTTA+AGG - chr8_1:4615879-4615898 None:intergenic 20.0%
!!! TAAATGATTCTTTGATTTGT+AGG + chr8_1:4616010-4616029 Msa1173900:intron 20.0%
!! TTCTTTATTGGATTCTAATT+AGG - chr8_1:4616109-4616128 None:intergenic 20.0%
!! AATTAGAATCCAATAAAGAA+AGG + chr8_1:4616109-4616128 Msa1173900:intron 20.0%
!!! TTTTTTTTTTTTGAGGGAAA+AGG - chr8_1:4616151-4616170 None:intergenic 20.0%
!!! TATCTTTACCATTTTTCTTT+TGG + chr8_1:4616215-4616234 Msa1173900:intron 20.0%
!!! AAATATTTTAGGGATCATTT+TGG + chr8_1:4616975-4616994 Msa1173900:intron 20.0%
!!! ATTTTTGTGTTATCTTTACA+GGG + chr8_1:4617187-4617206 Msa1173900:intron 20.0%
!!! TAGTAAAAAATGTAGACTTT+TGG + chr8_1:4617475-4617494 Msa1173900:intron 20.0%
!! ATAAAGAAGGATTCAATATA+TGG - chr8_1:4617634-4617653 None:intergenic 20.0%
!! AGCATAATTCTTTATAAAGA+AGG - chr8_1:4617647-4617666 None:intergenic 20.0%
!! ATTAGAAAAGAAACTCTAAA+TGG + chr8_1:4617675-4617694 Msa1173900:intron 20.0%
!! AAACTGTTATAAGAGATTAA+TGG - chr8_1:4617975-4617994 None:intergenic 20.0%
!!! TTTTTGGCTTTTAGAAATCA+TGG + chr8_1:4614432-4614451 Msa1173900:intron 25.0%
!!! TTTTGGCTTTTAGAAATCAT+GGG + chr8_1:4614433-4614452 Msa1173900:intron 25.0%
! ATTGGATCAATATTGTTTCA+TGG + chr8_1:4614481-4614500 Msa1173900:intron 25.0%
!!! GATAGTTTTGGAAGAAAAAA+TGG + chr8_1:4614505-4614524 Msa1173900:intron 25.0%
!! GCCTTTTCAATTATTAGTTA+TGG + chr8_1:4615027-4615046 Msa1173900:intron 25.0%
! TCAATTATTAGTTATGGTCT+TGG + chr8_1:4615033-4615052 Msa1173900:intron 25.0%
! TATGATGTGACATGTTAATA+TGG + chr8_1:4615064-4615083 Msa1173900:intron 25.0%
! ATGATGTGACATGTTAATAT+GGG + chr8_1:4615065-4615084 Msa1173900:intron 25.0%
! ACTGAACAATTCATTCTTAA+TGG - chr8_1:4615259-4615278 None:intergenic 25.0%
! TAAGTACACTTAGATTTAGT+TGG + chr8_1:4615473-4615492 Msa1173900:intron 25.0%
! AAGTACACTTAGATTTAGTT+GGG + chr8_1:4615474-4615493 Msa1173900:intron 25.0%
! CTCAAATGAAAAATGAGTAT+CGG + chr8_1:4615497-4615516 Msa1173900:intron 25.0%
!!! AATCACTTTAATTTGGACAA+AGG - chr8_1:4615921-4615940 None:intergenic 25.0%
! AAACATTTATCATATCTCAC+TGG + chr8_1:4616045-4616064 Msa1173900:intron 25.0%
! TACATGATTCCTTTCTTTAT+TGG - chr8_1:4616121-4616140 None:intergenic 25.0%
!! GTCTAAGATAATTACATCAA+AGG - chr8_1:4616186-4616205 None:intergenic 25.0%
! TCTGTAAACCAAAAGAAAAA+TGG - chr8_1:4616226-4616245 None:intergenic 25.0%
!!! ATTTTTCTTTTGGTTTACAG+AGG + chr8_1:4616225-4616244 Msa1173900:intron 25.0%
!! ACTATTTTCATGTAAGCTAT+AGG - chr8_1:4616555-4616574 None:intergenic 25.0%
! AAAAAAACATATTTGAGGAG+AGG - chr8_1:4616785-4616804 None:intergenic 25.0%
! CCACAAAAAAAACATATTTG+AGG - chr8_1:4616790-4616809 None:intergenic 25.0%
!!! CCTCAAATATGTTTTTTTTG+TGG + chr8_1:4616787-4616806 Msa1173900:intron 25.0%
!! TTTGGAATATTGATAACATG+AGG + chr8_1:4616993-4617012 Msa1173900:intron 25.0%
!! TTGGAATATTGATAACATGA+GGG + chr8_1:4616994-4617013 Msa1173900:intron 25.0%
!! CACAAAAATCCCTAAATTTT+AGG - chr8_1:4617176-4617195 None:intergenic 25.0%
!! GATTTTTGTGTTATCTTTAC+AGG + chr8_1:4617186-4617205 Msa1173900:intron 25.0%
! CTATAAATTGTGATGTATGT+TGG + chr8_1:4617361-4617380 Msa1173900:intron 25.0%
!! GATAAAGCACATCTTTTTAA+AGG + chr8_1:4617395-4617414 Msa1173900:intron 25.0%
! TGAGTGTAAAATTTATGGAA+AGG + chr8_1:4618310-4618329 Msa1173900:three_prime_UTR 25.0%
! GAGTGTAAAATTTATGGAAA+GGG + chr8_1:4618311-4618330 Msa1173900:three_prime_UTR 25.0%
! ATGAAAGGAAATTTAGAAGT+AGG - chr8_1:4618537-4618556 None:intergenic 25.0%
! TTCTTTTCAACAGCATTAAC+CGG - chr8_1:4614324-4614343 None:intergenic 30.0%
! TTGTTTCATGGTGATAGTTT+TGG + chr8_1:4614493-4614512 Msa1173900:intron 30.0%
!!! GTTTTGGAAGAAAAAATGGA+AGG + chr8_1:4614509-4614528 Msa1173900:intron 30.0%
TGATGTGACATGTTAATATG+GGG + chr8_1:4615066-4615085 Msa1173900:intron 30.0%
AAAGGTCTAACCATGAAATT+TGG + chr8_1:4615214-4615233 Msa1173900:intron 30.0%
! ACCATGAAATTTGGTTCAAA+TGG + chr8_1:4615223-4615242 Msa1173900:intron 30.0%
ACCATTTGAACCAAATTTCA+TGG - chr8_1:4615227-4615246 None:intergenic 30.0%
! GATTACAGTAATCTAGAGTT+CGG - chr8_1:4615601-4615620 None:intergenic 30.0%
! TGATAAGATTCGGTTCATAA+GGG - chr8_1:4615629-4615648 None:intergenic 30.0%
! TTGATAAGATTCGGTTCATA+AGG - chr8_1:4615630-4615649 None:intergenic 30.0%
! TTGTCTTTGAAAAGCTACTT+TGG + chr8_1:4615714-4615733 Msa1173900:intron 30.0%
! TGTCTTTGAAAAGCTACTTT+GGG + chr8_1:4615715-4615734 Msa1173900:intron 30.0%
! TAGTGTAAGGTACCTTTATT+GGG - chr8_1:4615820-4615839 None:intergenic 30.0%
ACTTGTTTCATAACCATCAA+AGG + chr8_1:4616378-4616397 Msa1173900:intron 30.0%
ACTTATTTGAGCTTATCTAC+TGG + chr8_1:4616414-4616433 Msa1173900:intron 30.0%
! ACTTTATTTCCAAAAACTCG+AGG + chr8_1:4616512-4616531 Msa1173900:intron 30.0%
! ATAAGTTATCCTCGAGTTTT+TGG - chr8_1:4616524-4616543 None:intergenic 30.0%
GAAAAGGTTATCTAATGTGA+AGG + chr8_1:4616845-4616864 Msa1173900:CDS 30.0%
TTCTTACTTATTCTCTGCTT+TGG - chr8_1:4616892-4616911 None:intergenic 30.0%
! TGATACTTTAAGAGTCTGTT+TGG - chr8_1:4617122-4617141 None:intergenic 30.0%
AGCTCAACTAAGAAAAATTG+AGG + chr8_1:4617268-4617287 Msa1173900:CDS 30.0%
AAAGATGTGCTTTATCTGTT+TGG - chr8_1:4617391-4617410 None:intergenic 30.0%
TCATATTCTTACCAGACATT+TGG + chr8_1:4617545-4617564 Msa1173900:intron 30.0%
CAAGACAATAATTGGATTGA+AGG - chr8_1:4617573-4617592 None:intergenic 30.0%
GACAAAAGCAAGACAATAAT+TGG - chr8_1:4617581-4617600 None:intergenic 30.0%
! ATTCAATATATGGACTGCAT+AGG - chr8_1:4617624-4617643 None:intergenic 30.0%
CTGAAAACGCTAATATTGAT+AGG + chr8_1:4617925-4617944 Msa1173900:intron 30.0%
AAACGCTAATATTGATAGGT+CGG + chr8_1:4617929-4617948 Msa1173900:intron 30.0%
! AAATTTTTGAACACTTTGGC+AGG + chr8_1:4618016-4618035 Msa1173900:intron 30.0%
GAGAAAAAGAAAGCAGAATA+TGG + chr8_1:4618047-4618066 Msa1173900:CDS 30.0%
GTGTGTGAGTGTAAAATTTA+TGG + chr8_1:4618305-4618324 Msa1173900:three_prime_UTR 30.0%
TATGGAAAGGGAAAATACAT+TGG + chr8_1:4618323-4618342 Msa1173900:three_prime_UTR 30.0%
! AAGAGAACATTTTCTGACAT+TGG - chr8_1:4618396-4618415 None:intergenic 30.0%
TAGTGGAAAGAATCAATGAA+AGG - chr8_1:4618552-4618571 None:intergenic 30.0%
TTGGTTGTGTAATAATGTAG+TGG - chr8_1:4618569-4618588 None:intergenic 30.0%
AGATCAACAAAGAACTTGTG+TGG - chr8_1:4614042-4614061 None:intergenic 35.0%
AGAGAGAGAGAAGAAGTTTA+AGG - chr8_1:4614120-4614139 None:intergenic 35.0%
CAAAGTAATGAAGCAAAGCA+AGG - chr8_1:4614778-4614797 None:intergenic 35.0%
! CAAGATATGGACAAAGCATT+TGG - chr8_1:4614986-4615005 None:intergenic 35.0%
! AATTGAAAAGGCATGCCTAA+CGG - chr8_1:4615019-4615038 None:intergenic 35.0%
TGACATGTTAATATGGGGTA+GGG + chr8_1:4615071-4615090 Msa1173900:intron 35.0%
TTTCTTTGCCTTGCAAAAGT+TGG + chr8_1:4615103-4615122 Msa1173900:intron 35.0%
GAGCAAAAACTATAGTTAGC+TGG - chr8_1:4615173-4615192 None:intergenic 35.0%
TTCGATTACCGAAACAATTC+AGG + chr8_1:4615289-4615308 Msa1173900:intron 35.0%
TCGATTACCGAAACAATTCA+GGG + chr8_1:4615290-4615309 Msa1173900:intron 35.0%
GTCAGGAGGTAAATTAAGTT+TGG - chr8_1:4615316-4615335 None:intergenic 35.0%
! TGATAATTTGGAGTTCAGTC+AGG - chr8_1:4615333-4615352 None:intergenic 35.0%
TGACTGAACTCCAAATTATC+AGG + chr8_1:4615332-4615351 Msa1173900:intron 35.0%
! AGTGTAAGGTACCTTTATTG+GGG - chr8_1:4615819-4615838 None:intergenic 35.0%
! CTAGTGTAAGGTACCTTTAT+TGG - chr8_1:4615821-4615840 None:intergenic 35.0%
AACTTTCACTCAACAAAGCT+TGG + chr8_1:4615849-4615868 Msa1173900:intron 35.0%
!!! GCATTCTTTTTTACAGGTTC+TGG - chr8_1:4616253-4616272 None:intergenic 35.0%
!!! AGGGATGCATTCTTTTTTAC+AGG - chr8_1:4616259-4616278 None:intergenic 35.0%
ACAAGACTAACCTCTATCAA+GGG - chr8_1:4616278-4616297 None:intergenic 35.0%
AACAAGACTAACCTCTATCA+AGG - chr8_1:4616279-4616298 None:intergenic 35.0%
ATAACCATCAAAGGTCTATC+TGG + chr8_1:4616387-4616406 Msa1173900:intron 35.0%
TCACAATTCTCTATCTTCCT+TGG + chr8_1:4616716-4616735 Msa1173900:intron 35.0%
AGCACATATTCATGTTACCA+AGG - chr8_1:4616736-4616755 None:intergenic 35.0%
ATATCGCTCTTGCAGAAATA+GGG + chr8_1:4616817-4616836 Msa1173900:CDS 35.0%
CAGAAATAGGGAAAGAGAAA+AGG + chr8_1:4616829-4616848 Msa1173900:CDS 35.0%
! GTTATCTAATGTGAAGGCAT+GGG + chr8_1:4616851-4616870 Msa1173900:CDS 35.0%
TATTAATGATGTCAGCGTGT+CGG - chr8_1:4617759-4617778 None:intergenic 35.0%
TCAACATTGTCAGTTGAGTT+AGG - chr8_1:4617899-4617918 None:intergenic 35.0%
AAGAGATTAATGGCGAAACT+CGG - chr8_1:4617965-4617984 None:intergenic 35.0%
TGGTGAGAAAATCAAGAACA+AGG + chr8_1:4618067-4618086 Msa1173900:CDS 35.0%
TGAGAAAATCAAGAACAAGG+TGG + chr8_1:4618070-4618089 Msa1173900:CDS 35.0%
!! CATCATATCAAAAGCATCCA+AGG - chr8_1:4618220-4618239 None:intergenic 35.0%
AATACATTGGAGGAACATGT+TGG + chr8_1:4618336-4618355 Msa1173900:three_prime_UTR 35.0%
TGAACCAAACTCAGAACCTA+TGG + chr8_1:4614185-4614204 Msa1173900:exon 40.0%
! TTTTCAACAGCATTAACCGG+AGG - chr8_1:4614321-4614340 None:intergenic 40.0%
TGCTGTTGAAAAGAAAGCAG+CGG + chr8_1:4614329-4614348 Msa1173900:CDS 40.0%
!! CGGATCACTGATTCAAGATA+TGG - chr8_1:4614999-4615018 None:intergenic 40.0%
TCTTGAATCAGTGATCCGTT+AGG + chr8_1:4615001-4615020 Msa1173900:intron 40.0%
GTGACATGTTAATATGGGGT+AGG + chr8_1:4615070-4615089 Msa1173900:intron 40.0%
! GAGTCAAACCAACTTTTGCA+AGG - chr8_1:4615114-4615133 None:intergenic 40.0%
TTGTTTCGGTAATCGAACTC+AGG - chr8_1:4615286-4615305 None:intergenic 40.0%
AGTTTGGCCCTGAATTGTTT+CGG - chr8_1:4615300-4615319 None:intergenic 40.0%
! TAATTTGGAGTTCAGTCAGG+AGG - chr8_1:4615330-4615349 None:intergenic 40.0%
! TTTAGAACACTCCGGTTCTA+AGG - chr8_1:4615366-4615385 None:intergenic 40.0%
! CCAATGCATTTAGAACACTC+CGG - chr8_1:4615374-4615393 None:intergenic 40.0%
! TGTAAGGTACCTTTATTGGG+GGG - chr8_1:4615817-4615836 None:intergenic 40.0%
! GTGTAAGGTACCTTTATTGG+GGG - chr8_1:4615818-4615837 None:intergenic 40.0%
! AAGGTACCTTACACTAGACT+TGG + chr8_1:4615824-4615843 Msa1173900:intron 40.0%
AGGTACCTTACACTAGACTT+GGG + chr8_1:4615825-4615844 Msa1173900:intron 40.0%
AGTTTCCCAAGTCTAGTGTA+AGG - chr8_1:4615833-4615852 None:intergenic 40.0%
AAGAATGCATCCCTTGATAG+AGG + chr8_1:4616265-4616284 Msa1173900:CDS 40.0%
CAATCCAGATAGACCTTTGA+TGG - chr8_1:4616394-4616413 None:intergenic 40.0%
CACAGTGCTAATATATGCCT+AGG + chr8_1:4616683-4616702 Msa1173900:intron 40.0%
ATTGTGACAGCAAGAAACCT+AGG - chr8_1:4616703-4616722 None:intergenic 40.0%
TTGAGGAGAGGTTTCATAAG+AGG - chr8_1:4616773-4616792 None:intergenic 40.0%
GATATCGCTCTTGCAGAAAT+AGG + chr8_1:4616816-4616835 Msa1173900:intron 40.0%
GGTTATCTAATGTGAAGGCA+TGG + chr8_1:4616850-4616869 Msa1173900:CDS 40.0%
GATGTGCTTTATCTGTTTGG+TGG - chr8_1:4617388-4617407 None:intergenic 40.0%
GATTGAAGGTTCCAAATGTC+TGG - chr8_1:4617559-4617578 None:intergenic 40.0%
GTTGAGTTAGGTATGAAGCA+CGG - chr8_1:4617887-4617906 None:intergenic 40.0%
AATCAAGAACAAGGTGGCAA+TGG + chr8_1:4618076-4618095 Msa1173900:CDS 40.0%
AATGGTTCACAAACAAGCAG+AGG + chr8_1:4618094-4618113 Msa1173900:CDS 40.0%
GCTGCAAAACATAATGCAAC+AGG + chr8_1:4618176-4618195 Msa1173900:CDS 40.0%
ACTGTTCCAAAGAAACTCCT+TGG + chr8_1:4618200-4618219 Msa1173900:CDS 40.0%
AAGCATCCAAGGAGTTTCTT+TGG - chr8_1:4618209-4618228 None:intergenic 40.0%
GGAAAGGGAAAATACATTGG+AGG + chr8_1:4618326-4618345 Msa1173900:three_prime_UTR 40.0%
!! TCAGCCATAGGTTCTGAGTT+TGG - chr8_1:4614192-4614211 None:intergenic 45.0%
!! TTGGTTTGGAGTTCAGCCAT+AGG - chr8_1:4614204-4614223 None:intergenic 45.0%
GAACTGCTTCTTGCTTGGTT+TGG - chr8_1:4614218-4614237 None:intergenic 45.0%
!! CACAAAGGCACTTGTTGTTG+TGG + chr8_1:4614374-4614393 Msa1173900:CDS 45.0%
GGAAAGGGGTCCTGATAATT+TGG - chr8_1:4615345-4615364 None:intergenic 45.0%
!! ACACTCCGGTTCTAAGGAAA+GGG - chr8_1:4615360-4615379 None:intergenic 45.0%
!! AACACTCCGGTTCTAAGGAA+AGG - chr8_1:4615361-4615380 None:intergenic 45.0%
! CCGGAGTGTTCTAAATGCAT+TGG + chr8_1:4615371-4615390 Msa1173900:intron 45.0%
! TTTGGGACCAGTGTGTCAAA+AGG + chr8_1:4615732-4615751 Msa1173900:intron 45.0%
! TCTCTCACCTTTTGACACAC+TGG - chr8_1:4615742-4615761 None:intergenic 45.0%
CCTTTATTGGGGGGGATTTA+TGG - chr8_1:4615808-4615827 None:intergenic 45.0%
CCATAAATCCCCCCCAATAA+AGG + chr8_1:4615805-4615824 Msa1173900:intron 45.0%
! GTAAGGTACCTTTATTGGGG+GGG - chr8_1:4615816-4615835 None:intergenic 45.0%
AGACCTGTCATTGCAACAGT+GGG - chr8_1:4615979-4615998 None:intergenic 45.0%
AAGACCTGTCATTGCAACAG+TGG - chr8_1:4615980-4615999 None:intergenic 45.0%
ACCTAACTCCCTATGAAGCA+CGG + chr8_1:4617706-4617725 Msa1173900:intron 45.0%
ACACGACACATGTCTGATAC+CGG + chr8_1:4617838-4617857 Msa1173900:intron 45.0%
TAATGGCGAAACTCGGATGA+AGG - chr8_1:4617958-4617977 None:intergenic 45.0%
AACACTTTGGCAGGAGCAAT+TGG + chr8_1:4618025-4618044 Msa1173900:intron 45.0%
ACGTGCTGAAGCAATTCTCA+AGG + chr8_1:4618142-4618161 Msa1173900:CDS 45.0%
TGAAGCAATTCTCAAGGCAG+AGG + chr8_1:4618148-4618167 Msa1173900:CDS 45.0%
GAACATGTTGGACAGCACAA+AGG + chr8_1:4618348-4618367 Msa1173900:three_prime_UTR 45.0%
TGGACAGCACAAAGGATCTT+TGG + chr8_1:4618356-4618375 Msa1173900:three_prime_UTR 45.0%
AGCAGGAACTGCTTCTTGCT+TGG - chr8_1:4614223-4614242 None:intergenic 50.0%
CTCAGCTAGAGGTGGTTCAA+CGG - chr8_1:4614295-4614314 None:intergenic 50.0%
AGGACCCCTTTCCTTAGAAC+CGG + chr8_1:4615352-4615371 Msa1173900:intron 50.0%
!! CACTCCGGTTCTAAGGAAAG+GGG - chr8_1:4615359-4615378 None:intergenic 50.0%
ATTGGGGGGGATTTATGGTG+AGG - chr8_1:4615803-4615822 None:intergenic 50.0%
TGTCCCACTGTTGCAATGAC+AGG + chr8_1:4615973-4615992 Msa1173900:intron 50.0%
AGCTCTCTACTGTTGCTGCT+TGG + chr8_1:4617219-4617238 Msa1173900:CDS 50.0%
! GCTCTCTACTGTTGCTGCTT+GGG + chr8_1:4617220-4617239 Msa1173900:CDS 50.0%
TCCGTGCTTCATAGGGAGTT+AGG - chr8_1:4617710-4617729 None:intergenic 50.0%
CTCCCTATGAAGCACGGATA+CGG + chr8_1:4617712-4617731 Msa1173900:intron 50.0%
GTCCGTATCCGTGCTTCATA+GGG - chr8_1:4617717-4617736 None:intergenic 50.0%
TGTCCGTATCCGTGCTTCAT+AGG - chr8_1:4617718-4617737 None:intergenic 50.0%
CACGACACATGTCTGATACC+GGG + chr8_1:4617839-4617858 Msa1173900:intron 50.0%
CGTTGAACCACCTCTAGCTG+AGG + chr8_1:4614293-4614312 Msa1173900:CDS 55.0%
TTTGTGTCATCTGCCGCAGG+TGG - chr8_1:4614360-4614379 None:intergenic 55.0%
ACCTGCGGCAGATGACACAA+AGG + chr8_1:4614359-4614378 Msa1173900:CDS 55.0%
TCCTAGGATTAGGCGTGTCC+CGG - chr8_1:4617860-4617879 None:intergenic 55.0%
TATGAAGCACGGACGCTCCT+AGG - chr8_1:4617876-4617895 None:intergenic 55.0%
AGCAGTTCCTGCTCCTGCTC+CGG + chr8_1:4614230-4614249 Msa1173900:CDS 60.0%
GCTGGAGTTGGAACTGGTGC+CGG - chr8_1:4614264-4614283 None:intergenic 60.0%
GCAGGAGCTGGAGTTGGAAC+TGG - chr8_1:4614270-4614289 None:intergenic 60.0%
AGAGGTGGTTCAACGGCAGC+AGG - chr8_1:4614288-4614307 None:intergenic 60.0%
! ACCTCTAGCTGAGGCACCTC+CGG + chr8_1:4614302-4614321 Msa1173900:CDS 60.0%
GCCTTTGTGTCATCTGCCGC+AGG - chr8_1:4614363-4614382 None:intergenic 60.0%
ACCGGGACACGCCTAATCCT+AGG + chr8_1:4617856-4617875 Msa1173900:intron 60.0%
GCACGGACGCTCCTAGGATT+AGG - chr8_1:4617870-4617889 None:intergenic 60.0%
!! GTTGGAACTGGTGCCGGTGC+CGG - chr8_1:4614258-4614277 None:intergenic 65.0%
ACGGCAGCAGGAGCTGGAGT+TGG - chr8_1:4614276-4614295 None:intergenic 65.0%
GGTTCAACGGCAGCAGGAGC+TGG - chr8_1:4614282-4614301 None:intergenic 65.0%
!! GGAGGTGCCTCAGCTAGAGG+TGG - chr8_1:4614303-4614322 None:intergenic 65.0%
!! ACCGGAGGTGCCTCAGCTAG+AGG - chr8_1:4614306-4614325 None:intergenic 65.0%
GTGTCATCTGCCGCAGGTGG+CGG - chr8_1:4614357-4614376 None:intergenic 65.0%
TCCTGCTCCTGCTCCGGCAC+CGG + chr8_1:4614236-4614255 Msa1173900:CDS 70.0%
!! TCCTGCTCCGGCACCGGCAC+CGG + chr8_1:4614242-4614261 Msa1173900:CDS 75.0%
!! ACTGGTGCCGGTGCCGGTGC+CGG - chr8_1:4614252-4614271 None:intergenic 75.0%
AGCAGCGGCACCGCCACCTG+CGG + chr8_1:4614344-4614363 Msa1173900:CDS 75.0%
!! GCCGGTGCCGGAGCAGGAGC+AGG - chr8_1:4614240-4614259 None:intergenic 80.0%
!!! GCCGGTGCCGGTGCCGGAGC+AGG - chr8_1:4614246-4614265 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 4614018 4618594 4614018 ID=Msa1173900;Name=Msa1173900
chr8_1 mRNA 4614018 4618594 4614018 ID=Msa1173900-mRNA-1;Parent=Msa1173900;Name=Msa1173900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=162|1|1|1|0.8|0.66|6|362|202
chr8_1 exon 4614018 4614129 4614018 ID=Msa1173900-mRNA-1:exon:1615;Parent=Msa1173900-mRNA-1
chr8_1 exon 4614154 4614405 4614154 ID=Msa1173900-mRNA-1:exon:1616;Parent=Msa1173900-mRNA-1
chr8_1 exon 4616245 4616286 4616245 ID=Msa1173900-mRNA-1:exon:1617;Parent=Msa1173900-mRNA-1
chr8_1 exon 4616817 4616904 4616817 ID=Msa1173900-mRNA-1:exon:1618;Parent=Msa1173900-mRNA-1
chr8_1 exon 4617208 4617289 4617208 ID=Msa1173900-mRNA-1:exon:1619;Parent=Msa1173900-mRNA-1
chr8_1 exon 4618038 4618594 4618038 ID=Msa1173900-mRNA-1:exon:1620;Parent=Msa1173900-mRNA-1
chr8_1 five_prime_UTR 4614018 4614129 4614018 ID=Msa1173900-mRNA-1:five_prime_utr;Parent=Msa1173900-mRNA-1
chr8_1 five_prime_UTR 4614154 4614203 4614154 ID=Msa1173900-mRNA-1:five_prime_utr;Parent=Msa1173900-mRNA-1
chr8_1 CDS 4614204 4614405 4614204 ID=Msa1173900-mRNA-1:cds;Parent=Msa1173900-mRNA-1
chr8_1 CDS 4616245 4616286 4616245 ID=Msa1173900-mRNA-1:cds;Parent=Msa1173900-mRNA-1
chr8_1 CDS 4616817 4616904 4616817 ID=Msa1173900-mRNA-1:cds;Parent=Msa1173900-mRNA-1
chr8_1 CDS 4617208 4617289 4617208 ID=Msa1173900-mRNA-1:cds;Parent=Msa1173900-mRNA-1
chr8_1 CDS 4618038 4618232 4618038 ID=Msa1173900-mRNA-1:cds;Parent=Msa1173900-mRNA-1
chr8_1 three_prime_UTR 4618233 4618594 4618233 ID=Msa1173900-mRNA-1:three_prime_utr;Parent=Msa1173900-mRNA-1
Gene Sequence

>Msa1173900

ATGGCTGAACTCCAAACCAAGCAAGAAGCAGTTCCTGCTCCTGCTCCGGCACCGGCACCGGCACCAGTTCCAACTCCAGCTCCTGCTGCCGTTGAACCACCTCTAGCTGAGGCACCTCCGGTTAATGCTGTTGAAAAGAAAGCAGCGGCACCGCCACCTGCGGCAGATGACACAAAGGCACTTGTTGTTGTGGATAATGAGAAGGCACCAGAACCTGTAAAAAAGAATGCATCCCTTGATAGAGATATCGCTCTTGCAGAAATAGGGAAAGAGAAAAGGTTATCTAATGTGAAGGCATGGGAAGACAGTCAAAAAACCAAAGCAGAGAATAAGGCACAAAAGCAGCTCTCTACTGTTGCTGCTTGGGAAAACAGCAAGAAAGCAGCTCTTGAAGCTCAACTAAGAAAAATTGAGGAGCAATTGGAGAAAAAGAAAGCAGAATATGGTGAGAAAATCAAGAACAAGGTGGCAATGGTTCACAAACAAGCAGAGGAGAAGAGAGCAATAGTTGAAGCTCAACGTGCTGAAGCAATTCTCAAGGCAGAGGAAATAGCTGCAAAACATAATGCAACAGGAACTGTTCCAAAGAAACTCCTTGGATGCTTTTGA

Protein sequence

>Msa1173900

MAELQTKQEAVPAPAPAPAPAPVPTPAPAAVEPPLAEAPPVNAVEKKAAAPPPAADDTKALVVVDNEKAPEPVKKNASLDRDIALAEIGKEKRLSNVKAWEDSQKTKAENKAQKQLSTVAAWENSKKAALEAQLRKIEEQLEKKKAEYGEKIKNKVAMVHKQAEEKRAIVEAQRAEAILKAEEIAAKHNATGTVPKKLLGCF*