AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0943170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0943170 MtrunA17_Chr6g0459741 100.000 249 0 0 1 249 1 249 0.0 514
Msa0943170 MtrunA17_Chr0c02g0489661 36.612 183 116 0 8 190 6 188 3.63e-39 135
Msa0943170 MtrunA17_Chr1g0155371 40.838 191 108 3 8 196 6 193 9.27e-39 136
Msa0943170 MtrunA17_Chr1g0210811 34.783 207 120 2 6 203 6 206 3.48e-38 133
Msa0943170 MtrunA17_Chr7g0243311 35.071 211 135 2 8 216 5 215 7.45e-38 133
Msa0943170 MtrunA17_Chr5g0401801 37.500 192 117 3 8 197 5 195 3.17e-37 130
Msa0943170 MtrunA17_Chr8g0360781 36.932 176 109 2 5 178 6 181 2.00e-32 119
Msa0943170 MtrunA17_Chr2g0308541 35.227 176 112 2 5 178 6 181 2.37e-32 118
Msa0943170 MtrunA17_Chr8g0371571 35.260 173 110 1 8 178 4 176 1.26e-29 111
Msa0943170 MtrunA17_Chr2g0283841 35.260 173 110 1 8 178 4 176 3.88e-28 107
Msa0943170 MtrunA17_Chr6g0459771 88.462 52 6 0 176 227 22 73 2.37e-27 100
Msa0943170 MtrunA17_Chr4g0004521 33.540 161 99 4 38 196 34 188 3.92e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0943170 AT2G27020.1 86.747 249 33 0 1 249 1 249 5.52e-168 464
Msa0943170 AT2G27020.2 86.747 249 33 0 1 249 103 351 1.27e-166 464
Msa0943170 AT1G47250.1 42.105 171 97 1 8 178 6 174 7.06e-39 136
Msa0943170 AT1G16470.1 34.146 205 134 1 8 211 6 210 7.07e-39 135
Msa0943170 AT1G16470.2 34.146 205 134 1 8 211 6 210 7.07e-39 135
Msa0943170 AT1G79210.1 34.146 205 134 1 8 211 6 210 8.30e-39 135
Msa0943170 AT1G79210.2 34.146 205 134 1 8 211 6 210 8.30e-39 135
Msa0943170 AT1G79210.3 34.146 205 134 1 8 211 6 210 8.30e-39 135
Msa0943170 AT5G42790.1 42.105 171 97 1 8 178 6 174 1.17e-38 136
Msa0943170 AT3G14290.1 34.783 207 120 2 6 203 6 206 3.71e-38 134
Msa0943170 AT1G53850.1 34.300 207 121 2 6 203 6 206 9.73e-38 132
Msa0943170 AT1G53850.2 34.300 207 121 2 6 203 6 206 9.73e-38 132
Msa0943170 AT3G22110.1 34.783 230 143 5 8 231 5 233 2.58e-37 132
Msa0943170 AT5G35590.1 34.659 176 113 2 5 178 6 181 1.80e-32 119
Msa0943170 AT2G05840.2 35.795 176 111 2 5 178 6 181 1.39e-31 116
Msa0943170 AT2G05840.1 35.795 176 111 2 5 178 6 181 2.04e-31 116
Msa0943170 AT2G05840.3 35.795 176 111 2 5 178 6 181 2.33e-31 115
Msa0943170 AT5G66140.1 34.104 173 112 1 8 178 4 176 1.36e-28 109
Msa0943170 AT3G51260.1 34.104 173 112 1 8 178 4 176 1.63e-28 108
Msa0943170 AT3G51260.2 34.104 173 112 1 8 178 4 176 2.77e-28 108
Msa0943170 AT4G15165.1 30.144 209 102 5 8 214 5 171 2.37e-20 86.3

Find 80 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCATAGGCTTCAAAATT+TGG 0.128446 6_3:-18548734 Msa0943170:three_prime_UTR
CTTTGTTGCAGGACTGTTAT+TGG 0.164169 6_3:-18552323 Msa0943170:intron
CATTTGTTTCAGAGGTATTT+TGG 0.204212 6_3:-18550469 Msa0943170:intron
CCTTCGAAAATGATGCTTTC+GGG 0.215701 6_3:-18552159 Msa0943170:CDS
CAAGTTATGAAATGCATCTT+TGG 0.233654 6_3:+18548787 None:intergenic
TAATCTTGCTGCAGACCTTT+TGG 0.265690 6_3:-18550678 Msa0943170:intron
TCCACTTGTCCGCGGCATTA+TGG 0.286011 6_3:-18548588 Msa0943170:three_prime_UTR
GCAAGTTCCTTGACAGGAAT+TGG 0.290742 6_3:+18550829 None:intergenic
CGCGGCATTATGGCAACATT+TGG 0.314133 6_3:-18548578 Msa0943170:three_prime_UTR
ATGCAAGGATGGAATTGTTT+TGG 0.316941 6_3:-18552294 Msa0943170:intron
CCCTTCGAAAATGATGCTTT+CGG 0.324696 6_3:-18552160 Msa0943170:CDS
AAGTTATGAAATGCATCTTT+GGG 0.358865 6_3:+18548788 None:intergenic
TGTGCAGAGGTGCACGTAAC+TGG 0.359168 6_3:+18550795 None:intergenic
GCCAAAGCTGTCGACAATAG+TGG 0.361107 6_3:-18553275 Msa0943170:CDS
ATCTGGAAAACGCGACCATC+AGG 0.383550 6_3:+18553308 None:intergenic
AACGGCGTGAATTCTTCTAT+TGG 0.385310 6_3:+18552134 None:intergenic
AGATAAAATAAAGACATGTT+TGG 0.387089 6_3:+18548533 None:intergenic
AGCTAATTTAGCTGCTGTCT+TGG 0.388328 6_3:+18548853 None:intergenic
TGCACCTCTGCACATTATAC+TGG 0.388962 6_3:-18550786 Msa0943170:CDS
TTGTACATGGTCGAACCTTC+TGG 0.390091 6_3:-18550612 Msa0943170:CDS
TAAATTAGCTCTTGAAGAAA+TGG 0.390363 6_3:-18548840 Msa0943170:CDS
TTGTGCAAATGCAGTATATA+TGG 0.408846 6_3:-18549281 Msa0943170:intron
CCCACTATTGTCGACAGCTT+TGG 0.424001 6_3:+18553274 None:intergenic
CTTTGGCAGCATATTCGATC+TGG 0.428766 6_3:+18553291 None:intergenic
TTTGGATGTGGTGTCATACT+AGG 0.432245 6_3:-18550660 Msa0943170:CDS
GCTTCTTCTAGAAGCTCCTC+TGG 0.439481 6_3:+18548875 None:intergenic
AACTTGTAATAGAGAGCATT+GGG 0.446785 6_3:-18548770 Msa0943170:three_prime_UTR
CTACTTCAATAACTCCTTGT+CGG 0.461671 6_3:+18549395 None:intergenic
CTTGTTGATTTCTGTTGCTG+TGG 0.462822 6_3:-18548681 Msa0943170:three_prime_UTR
AACATAGGATTAGAAGCATT+AGG 0.465329 6_3:-18548482 Msa0943170:three_prime_UTR
CACGCCGTTCATCGCCACTC+TGG 0.470804 6_3:-18552120 Msa0943170:CDS
ATGGAAGGCAAATTGTTGCC+AGG 0.483133 6_3:-18551419 Msa0943170:CDS
TTCAATAACTCCTTGTCGGC+AGG 0.484664 6_3:+18549399 None:intergenic
ATTTCGAACTCGAAATGAGC+TGG 0.484940 6_3:-18549232 Msa0943170:CDS
ATCATGAGTAGCATTGGAAC+AGG 0.485653 6_3:-18553359 Msa0943170:CDS
ATCAAACCGTCAACATGAAA+AGG 0.490739 6_3:-18549198 Msa0943170:intron
TAACTTGTAATAGAGAGCAT+TGG 0.496052 6_3:-18548771 Msa0943170:three_prime_UTR
TCAGCAATCATGAGTAGCAT+TGG 0.498196 6_3:-18553365 Msa0943170:exon
TGCAATCGGGAAGGGCAGAC+AGG 0.508389 6_3:-18550443 Msa0943170:CDS
CGATCAGCAAGTTCCTTGAC+AGG 0.529831 6_3:+18550823 None:intergenic
CTGAAGCTACTAACTACGAC+AGG 0.532489 6_3:-18551389 Msa0943170:intron
GTCACTACTTTCTCTCCTGA+TGG 0.533196 6_3:-18553323 Msa0943170:CDS
GCACATTATACTGGTGGCTC+AGG 0.538022 6_3:-18550777 Msa0943170:intron
AACATCTATAGCAATCTCAT+AGG 0.539018 6_3:-18548747 Msa0943170:three_prime_UTR
GCCATAATGCCGCGGACAAG+TGG 0.551469 6_3:+18548587 None:intergenic
CAGGATTAGCTGCAGATGGA+AGG 0.556190 6_3:-18551434 Msa0943170:CDS
AGTATGACACCACATCCAAA+AGG 0.565132 6_3:+18550663 None:intergenic
CCAAAGCTGTCGACAATAGT+GGG 0.566060 6_3:-18553274 Msa0943170:intron
TTTGGTGCTGCAATCGGGAA+GGG 0.566694 6_3:-18550451 Msa0943170:CDS
TGGAGTTCATGACGAGGCAA+AGG 0.579021 6_3:-18549261 Msa0943170:CDS
CGTTCATCGCCACTCTGGAA+TGG 0.579273 6_3:-18552115 Msa0943170:intron
CGGTGATCCAATTCCTGTCA+AGG 0.580282 6_3:-18550836 Msa0943170:CDS
CATTCCAGAGTGGCGATGAA+CGG 0.580559 6_3:+18552116 None:intergenic
GTAGCAGGATTAGCTGCAGA+TGG 0.580997 6_3:-18551438 Msa0943170:CDS
AACACTAAATCAAATTGATG+AGG 0.583604 6_3:+18548628 None:intergenic
TGGAAGGCAAATTGTTGCCA+GGG 0.588037 6_3:-18551418 Msa0943170:CDS
GATTGAAAAGTTGAAGCTTG+CGG 0.589401 6_3:-18549428 Msa0943170:CDS
ACCTCTGCACATTATACTGG+TGG 0.589474 6_3:-18550783 Msa0943170:CDS
TGGTCTTCTCCACTTGTCCG+CGG 0.589546 6_3:-18548596 Msa0943170:three_prime_UTR
AGTAGCTTCAGACTTAGCCC+TGG 0.592267 6_3:+18551401 None:intergenic
ACACTAAATCAAATTGATGA+GGG 0.593010 6_3:+18548629 None:intergenic
ATTGGAATCAGATGCAAGGA+TGG 0.594083 6_3:-18552305 Msa0943170:CDS
AGATGGACCACAGTTGTACA+TGG 0.594311 6_3:-18550625 Msa0943170:CDS
GCGGATATGACCTGCCGACA+AGG 0.597273 6_3:-18549409 Msa0943170:CDS
CAAGGAACTTGCTGATCGCG+TGG 0.607658 6_3:-18550818 Msa0943170:CDS
CACAGCAACAGAAATCAACA+AGG 0.611749 6_3:+18548682 None:intergenic
TTTCGAACTCGAAATGAGCT+GGG 0.612900 6_3:-18549231 Msa0943170:CDS
CTAGGTGGTTACGATAGAGA+TGG 0.616616 6_3:-18550642 Msa0943170:CDS
ATCAGGAGAGAAAGTAGTGA+CGG 0.617907 6_3:+18553325 None:intergenic
TAATCGTGTGCAGGTTCCAG+AGG 0.624038 6_3:-18548891 Msa0943170:intron
TGTTATTGGAATCAGATGCA+AGG 0.641125 6_3:-18552309 Msa0943170:CDS
GGATGTGGTGTCATACTAGG+TGG 0.653371 6_3:-18550657 Msa0943170:CDS
CTCACATAAGAGACACCAGA+AGG 0.679277 6_3:+18550597 None:intergenic
GCCACCAGTATAATGTGCAG+AGG 0.679994 6_3:+18550782 None:intergenic
CAAATGTTGCCATAATGCCG+CGG 0.696936 6_3:+18548579 None:intergenic
GGAATTGTGGAAATGAGTTG+AGG 0.703572 6_3:+18548459 None:intergenic
GGTTCGACCATGTACAACTG+TGG 0.719686 6_3:+18550618 None:intergenic
AACAAAGTACCATTCCAGAG+TGG 0.731365 6_3:+18552106 None:intergenic
ACAGCAACAGAAATCAACAA+GGG 0.731830 6_3:+18548683 None:intergenic
TATATATGGAGTTCATGACG+AGG 0.744573 6_3:-18549267 Msa0943170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCATATATTTTCAATTT+TGG - chr6_3:18549375-18549394 Msa0943170:intron 10.0%
!!! ATAATTTTATTTGTTTAACT+CGG - chr6_3:18552022-18552041 Msa0943170:intron 10.0%
!!! TTCTTTTAATTACTTATATA+TGG - chr6_3:18552786-18552805 Msa0943170:intron 10.0%
!!! ATTTTTTGTGATGTTAATAA+TGG - chr6_3:18548724-18548743 Msa0943170:three_prime_UTR 15.0%
!!! TTTTTTGTGATGTTAATAAT+GGG - chr6_3:18548725-18548744 Msa0943170:three_prime_UTR 15.0%
!!! GCAATTGAATTTTTATTTTT+AGG - chr6_3:18548786-18548805 Msa0943170:three_prime_UTR 15.0%
!!! ATGTTTTCGAATATTAATTA+TGG - chr6_3:18549264-18549283 Msa0943170:CDS 15.0%
!!! TGTTTTCGAATATTAATTAT+GGG - chr6_3:18549265-18549284 Msa0943170:CDS 15.0%
!!! GAAATGTAGTTTTTAATTTA+AGG - chr6_3:18549453-18549472 Msa0943170:intron 15.0%
!! TAATAAGCATATTACATATA+AGG + chr6_3:18551775-18551794 None:intergenic 15.0%
!! TCGATAAATATAAAAAATAC+TGG - chr6_3:18552096-18552115 Msa0943170:intron 15.0%
!! GTTATTATATTATTGTTTAG+TGG - chr6_3:18552331-18552350 Msa0943170:intron 15.0%
!!! GTTTTAGTTCTTTAAAGATT+TGG - chr6_3:18549287-18549306 Msa0943170:intron 20.0%
!!! TCTTTAAAGATTTGGAATTA+AGG - chr6_3:18549295-18549314 Msa0943170:intron 20.0%
!!! CTTTAAAGATTTGGAATTAA+GGG - chr6_3:18549296-18549315 Msa0943170:intron 20.0%
!!! AGATTGTTATTCTGATAATT+TGG - chr6_3:18549656-18549675 Msa0943170:intron 20.0%
!!! GATTGTTATTCTGATAATTT+GGG - chr6_3:18549657-18549676 Msa0943170:intron 20.0%
!!! ATTGTTATTCTGATAATTTG+GGG - chr6_3:18549658-18549677 Msa0943170:intron 20.0%
!! AAAAAATTCAAAAAGCAAAC+AGG + chr6_3:18549687-18549706 None:intergenic 20.0%
!!! TTTTAGAAAAGTATCAACAA+TGG + chr6_3:18550332-18550351 None:intergenic 20.0%
!!! ACAAATCTTTTTCCAATTTT+AGG - chr6_3:18550453-18550472 Msa0943170:CDS 20.0%
!! TGTATTTAATCAAATAAAGG+AGG + chr6_3:18550586-18550605 None:intergenic 20.0%
!! TGGTGTATTTAATCAAATAA+AGG + chr6_3:18550589-18550608 None:intergenic 20.0%
!!! ATTTTTATCACATATTAGTC+AGG + chr6_3:18550708-18550727 None:intergenic 20.0%
!!! AAATTGATAACTTGAAATAG+AGG - chr6_3:18550815-18550834 Msa0943170:CDS 20.0%
!! AGAAGAATGTTTGTTTATTA+TGG - chr6_3:18551035-18551054 Msa0943170:intron 20.0%
!! CAGTAAAAAAAAAATTCACA+TGG + chr6_3:18551412-18551431 None:intergenic 20.0%
!!! TTTTACTGATTTGTTTGTAT+TGG - chr6_3:18551424-18551443 Msa0943170:CDS 20.0%
!! TCTAAATTGAACAATAATTG+TGG - chr6_3:18551541-18551560 Msa0943170:intron 20.0%
!! AAACATAGACAGTAATTAAA+AGG + chr6_3:18551570-18551589 None:intergenic 20.0%
!!! TTTTAATTACTGTCTATGTT+TGG - chr6_3:18551569-18551588 Msa0943170:intron 20.0%
!! TTTAATTACTGTCTATGTTT+GGG - chr6_3:18551570-18551589 Msa0943170:intron 20.0%
!! ATATTATTTACAGAAAGCAA+AGG + chr6_3:18551624-18551643 None:intergenic 20.0%
!! ATGTAATATGCTTATTAGAA+TGG - chr6_3:18551778-18551797 Msa0943170:intron 20.0%
!!! AGACTTAAAACACAATATTT+TGG - chr6_3:18551976-18551995 Msa0943170:intron 20.0%
!! TTATATTATTGTTTAGTGGA+TGG - chr6_3:18552335-18552354 Msa0943170:intron 20.0%
!! TGTAAAACAAAATTCTGATA+TGG + chr6_3:18552439-18552458 None:intergenic 20.0%
!!! GGTTCATATTTTTATGTTTA+TGG - chr6_3:18552906-18552925 Msa0943170:intron 20.0%
!!! GATTTAGTGTTTCATTTTAT+TGG - chr6_3:18553300-18553319 Msa0943170:CDS 20.0%
!! AGATAAAATAAAGACATGTT+TGG + chr6_3:18553386-18553405 None:intergenic 20.0%
!!! CATTTTCATTTTTCAAACAT+AGG - chr6_3:18553419-18553438 Msa0943170:five_prime_UTR 20.0%
!!! CGATTGATTTTGAGTTTTTT+TGG + chr6_3:18548513-18548532 None:intergenic 25.0%
!!! TGTTTTTGGATTTGGAATTA+TGG - chr6_3:18548755-18548774 Msa0943170:three_prime_UTR 25.0%
!!! GTTTTTGGATTTGGAATTAT+GGG - chr6_3:18548756-18548775 Msa0943170:three_prime_UTR 25.0%
!!! TAATGGGTTTTGTTTCTTTT+AGG - chr6_3:18548874-18548893 Msa0943170:CDS 25.0%
!!! GTTTTGTTTCTTTTAGGAAT+TGG - chr6_3:18548880-18548899 Msa0943170:CDS 25.0%
! GATGTATATATTGTGTAGTA+AGG - chr6_3:18549031-18549050 Msa0943170:intron 25.0%
! AAACTATAGGAGAAACTATT+AGG - chr6_3:18549109-18549128 Msa0943170:intron 25.0%
! AGAAACTATTAGGAATGATT+TGG - chr6_3:18549119-18549138 Msa0943170:intron 25.0%
!! TGATTTGGAAATTAATGAGT+TGG - chr6_3:18549134-18549153 Msa0943170:intron 25.0%
!!! GAATGCAGTTTGTTTATTTT+AGG - chr6_3:18549327-18549346 Msa0943170:intron 25.0%
!!! GTTTTAGTTCGTTTAAGATT+TGG - chr6_3:18549414-18549433 Msa0943170:CDS 25.0%
!! TCGTTTAAGATTTGGAAATA+AGG - chr6_3:18549422-18549441 Msa0943170:CDS 25.0%
!!! TTTCATTTTAGGTGTTTGTT+TGG - chr6_3:18549537-18549556 Msa0943170:intron 25.0%
!! TGTTAACTTTTGTGCAAATT+TGG - chr6_3:18549706-18549725 Msa0943170:intron 25.0%
!!! TGCAAATTTGGTTGATTTTA+GGG - chr6_3:18549718-18549737 Msa0943170:intron 25.0%
!! TTTTGTTACTGTCTTTCTTT+TGG - chr6_3:18549853-18549872 Msa0943170:intron 25.0%
! ACAATGGAAGGTTTAAATTA+CGG + chr6_3:18550316-18550335 None:intergenic 25.0%
!!! ATAAAGTTAGATGGACTAAT+AGG - chr6_3:18550633-18550652 Msa0943170:CDS 25.0%
! TAGTTTGGACAAATAACATT+TGG + chr6_3:18550734-18550753 None:intergenic 25.0%
! ATAATGATCTCATTATTCTG+AGG - chr6_3:18550994-18551013 Msa0943170:intron 25.0%
!! ATATTTCTTTTCAGTGTGTA+CGG - chr6_3:18551060-18551079 Msa0943170:intron 25.0%
! ATAAAAAATCACTGTAGCTA+AGG + chr6_3:18551386-18551405 None:intergenic 25.0%
! AATTAAATGTAACTCTTGTG+TGG - chr6_3:18552379-18552398 Msa0943170:intron 25.0%
! TAATAAGTAACAACAAACAC+TGG + chr6_3:18552573-18552592 None:intergenic 25.0%
!!! TTCATCTGTTTGATTTGTAT+TGG - chr6_3:18552838-18552857 Msa0943170:intron 25.0%
!! TTGCATAGAATTGTAGTTTT+TGG - chr6_3:18552965-18552984 Msa0943170:intron 25.0%
!! TAAATTAGCTCTTGAAGAAA+TGG - chr6_3:18553076-18553095 Msa0943170:intron 25.0%
! AAGTTATGAAATGCATCTTT+GGG + chr6_3:18553131-18553150 None:intergenic 25.0%
! ACACTAAATCAAATTGATGA+GGG + chr6_3:18553290-18553309 None:intergenic 25.0%
! AACACTAAATCAAATTGATG+AGG + chr6_3:18553291-18553310 None:intergenic 25.0%
! CAACTTTTCGAATCAAGTTT+TGG - chr6_3:18548680-18548699 Msa0943170:three_prime_UTR 30.0%
!!! GTGATGTTAATAATGGGTTT+TGG - chr6_3:18548731-18548750 Msa0943170:three_prime_UTR 30.0%
!!! TAATGGGTTTTGGTTGTTTT+TGG - chr6_3:18548741-18548760 Msa0943170:three_prime_UTR 30.0%
!!! GTTTTGGTTGTTTTTGGATT+TGG - chr6_3:18548747-18548766 Msa0943170:three_prime_UTR 30.0%
!! GTTTCTTTTAGGAATTGGAA+TGG - chr6_3:18548885-18548904 Msa0943170:intron 30.0%
! AGCTAGTGATTTTTGATAGA+TGG - chr6_3:18548969-18548988 Msa0943170:intron 30.0%
! TAGTGATTTTTGATAGATGG+TGG - chr6_3:18548972-18548991 Msa0943170:intron 30.0%
AGTAAGGAGAGTAAATCAAA+TGG - chr6_3:18549047-18549066 Msa0943170:intron 30.0%
GTAAGGAGAGTAAATCAAAT+GGG - chr6_3:18549048-18549067 Msa0943170:intron 30.0%
TAAGGAGAGTAAATCAAATG+GGG - chr6_3:18549049-18549068 Msa0943170:intron 30.0%
AGAAGACCTAGAAAAACTAT+AGG - chr6_3:18549096-18549115 Msa0943170:intron 30.0%
! GTTTCTCCTATAGTTTTTCT+AGG + chr6_3:18549105-18549124 None:intergenic 30.0%
!! TTTGGAATTAAGGGTTTTGA+AGG - chr6_3:18549305-18549324 Msa0943170:intron 30.0%
! TAGATTTGAAACTTTGTTGC+AGG - chr6_3:18549582-18549601 Msa0943170:intron 30.0%
!! GTGCAAATTTGGTTGATTTT+AGG - chr6_3:18549717-18549736 Msa0943170:intron 30.0%
GAAAGACAGTAACAAAATGA+CGG + chr6_3:18549850-18549869 None:intergenic 30.0%
TCTGGTCAAGACAAAAATAA+CGG + chr6_3:18549895-18549914 None:intergenic 30.0%
TAAGAGTGAAAGATTGTGAA+GGG - chr6_3:18549985-18550004 Msa0943170:intron 30.0%
! TCTATCACTGAATGATCTTT+TGG - chr6_3:18550039-18550058 Msa0943170:intron 30.0%
! TTTGGATCTTAGTAGTTCTA+TGG - chr6_3:18550126-18550145 Msa0943170:intron 30.0%
! TTGGATCTTAGTAGTTCTAT+GGG - chr6_3:18550127-18550146 Msa0943170:intron 30.0%
GGTCATTCTATATAGTATGT+AGG + chr6_3:18550188-18550207 None:intergenic 30.0%
! GCTGTGAATCGTTTAAAATT+CGG + chr6_3:18550209-18550228 None:intergenic 30.0%
!! AGAAAAGTATCAACAATGGA+AGG + chr6_3:18550328-18550347 None:intergenic 30.0%
ATAACTTGAAATAGAGGTGA+AGG - chr6_3:18550821-18550840 Msa0943170:CDS 30.0%
GGTTTCTTGAAACTTGAAAT+AGG - chr6_3:18550842-18550861 Msa0943170:CDS 30.0%
!!! CATTTGTTTCAGAGGTATTT+TGG - chr6_3:18551447-18551466 Msa0943170:intron 30.0%
! TTATTTGATGCTTGATAGCA+TGG + chr6_3:18551669-18551688 None:intergenic 30.0%
! CAAATAACTACTTTGAGTTC+TGG - chr6_3:18551682-18551701 Msa0943170:intron 30.0%
GAGATTAAGAAAAAAACTGC+AGG - chr6_3:18552162-18552181 Msa0943170:CDS 30.0%
TATCTTATGAATGTCTTTGC+AGG - chr6_3:18552463-18552482 Msa0943170:intron 30.0%
ATCTTATGAATGTCTTTGCA+GGG - chr6_3:18552464-18552483 Msa0943170:intron 30.0%
TTGTGCAAATGCAGTATATA+TGG - chr6_3:18552635-18552654 Msa0943170:intron 30.0%
TCAAACAGATGAAACAAATG+TGG + chr6_3:18552831-18552850 None:intergenic 30.0%
AACTTGAATGCATTTCAACA+GGG + chr6_3:18552945-18552964 None:intergenic 30.0%
CAAGTTATGAAATGCATCTT+TGG + chr6_3:18553132-18553151 None:intergenic 30.0%
! TAACTTGTAATAGAGAGCAT+TGG - chr6_3:18553145-18553164 Msa0943170:intron 30.0%
!! AACTTGTAATAGAGAGCATT+GGG - chr6_3:18553146-18553165 Msa0943170:intron 30.0%
AACATCTATAGCAATCTCAT+AGG - chr6_3:18553169-18553188 Msa0943170:intron 30.0%
ATCTCATAGGCTTCAAAATT+TGG - chr6_3:18553182-18553201 Msa0943170:intron 30.0%
!! AACATAGGATTAGAAGCATT+AGG - chr6_3:18553434-18553453 Msa0943170:five_prime_UTR 30.0%
TAGGAATTGGAATGGAATCA+AGG - chr6_3:18548893-18548912 Msa0943170:intron 35.0%
AGGAATTGGAATGGAATCAA+GGG - chr6_3:18548894-18548913 Msa0943170:intron 35.0%
AAGGAGAGTAAATCAAATGG+GGG - chr6_3:18549050-18549069 Msa0943170:intron 35.0%
! TAATGAGTTGGACTGAAATG+TGG - chr6_3:18549146-18549165 Msa0943170:intron 35.0%
TGGTGTATGATATGACACTA+TGG - chr6_3:18549166-18549185 Msa0943170:intron 35.0%
ATGGCGTAATTTAATCCATC+TGG - chr6_3:18549185-18549204 Msa0943170:intron 35.0%
! TCAGCTGTAGCTTTCATTTT+AGG - chr6_3:18549526-18549545 Msa0943170:intron 35.0%
TGTTATTGGAATCAGATGCA+AGG - chr6_3:18549607-18549626 Msa0943170:intron 35.0%
! ATGCAAGGATGGAATTGTTT+TGG - chr6_3:18549622-18549641 Msa0943170:intron 35.0%
AAATCAATCGCATCTCTTTC+TGG + chr6_3:18549913-18549932 None:intergenic 35.0%
CAATCTTTCACTCTTAGACA+TGG + chr6_3:18549981-18550000 None:intergenic 35.0%
CTAAGAGTGAAAGATTGTGA+AGG - chr6_3:18549984-18550003 Msa0943170:intron 35.0%
AAGAGTGAAAGATTGTGAAG+GGG - chr6_3:18549986-18550005 Msa0943170:intron 35.0%
AGTAGCATTAAGTAGAAGCA+GGG - chr6_3:18550065-18550084 Msa0943170:intron 35.0%
! TCCTGCGTGTTTATTTGTTT+TGG - chr6_3:18550108-18550127 Msa0943170:intron 35.0%
TCCAAAACAAATAAACACGC+AGG + chr6_3:18550112-18550131 None:intergenic 35.0%
! AGTTCTATGGGATTAGCATA+AGG - chr6_3:18550139-18550158 Msa0943170:intron 35.0%
TACACCATCTGTGATTGAAT+TGG - chr6_3:18550602-18550621 Msa0943170:CDS 35.0%
GATGCTGCTATAAAGTTAGA+TGG - chr6_3:18550624-18550643 Msa0943170:CDS 35.0%
GACTAATAGGAACCATATAG+TGG - chr6_3:18550646-18550665 Msa0943170:CDS 35.0%
! ACACGTTCTTTTCCACTATA+TGG + chr6_3:18550661-18550680 None:intergenic 35.0%
TCTAACACGTCATCTTAGTT+TGG + chr6_3:18550749-18550768 None:intergenic 35.0%
AAACTAAGATGACGTGTTAG+AGG - chr6_3:18550748-18550767 Msa0943170:intron 35.0%
! AAACACTGCTTGATGATTGA+TGG - chr6_3:18550907-18550926 Msa0943170:intron 35.0%
! TGTATTGGCATTTGTTTCAG+AGG - chr6_3:18551439-18551458 Msa0943170:CDS 35.0%
! TACTTTGAGTTCTGGTTACA+TGG - chr6_3:18551690-18551709 Msa0943170:intron 35.0%
! ACTTTGAGTTCTGGTTACAT+GGG - chr6_3:18551691-18551710 Msa0943170:intron 35.0%
ATGGGGATCTCTGTTTATAA+AGG - chr6_3:18551709-18551728 Msa0943170:intron 35.0%
TACTGCCCAAAAAAATGATG+GGG + chr6_3:18552048-18552067 None:intergenic 35.0%
CTACTGCCCAAAAAAATGAT+GGG + chr6_3:18552049-18552068 None:intergenic 35.0%
ACTACTGCCCAAAAAAATGA+TGG + chr6_3:18552050-18552069 None:intergenic 35.0%
!!! CATTTTTTTGGGCAGTAGTA+TGG - chr6_3:18552051-18552070 Msa0943170:intron 35.0%
!! TGGTAATAAGTGTTGAACAG+AGG - chr6_3:18552116-18552135 Msa0943170:CDS 35.0%
!! GGTAATAAGTGTTGAACAGA+GGG - chr6_3:18552117-18552136 Msa0943170:CDS 35.0%
!! GAGTTGATTTGGACTATCTT+TGG - chr6_3:18552207-18552226 Msa0943170:intron 35.0%
GATTGAAAAGTTGAAGCTTG+CGG - chr6_3:18552488-18552507 Msa0943170:intron 35.0%
CTACTTCAATAACTCCTTGT+CGG + chr6_3:18552524-18552543 None:intergenic 35.0%
TATATATGGAGTTCATGACG+AGG - chr6_3:18552649-18552668 Msa0943170:intron 35.0%
ATCAAACCGTCAACATGAAA+AGG - chr6_3:18552718-18552737 Msa0943170:intron 35.0%
AAAGCGACTCTTAATTCTGT+CGG - chr6_3:18552885-18552904 Msa0943170:intron 35.0%
ACAGCAACAGAAATCAACAA+GGG + chr6_3:18553236-18553255 None:intergenic 35.0%
TCAGCAATCATGAGTAGCAT+TGG - chr6_3:18548551-18548570 Msa0943170:three_prime_UTR 40.0%
! ATCATGAGTAGCATTGGAAC+AGG - chr6_3:18548557-18548576 Msa0943170:three_prime_UTR 40.0%
ATCAGGAGAGAAAGTAGTGA+CGG + chr6_3:18548594-18548613 None:intergenic 40.0%
!! AGATGGTGGAAAACATGCTT+AGG - chr6_3:18548986-18549005 Msa0943170:intron 40.0%
!! GATGGTGGAAAACATGCTTA+GGG - chr6_3:18548987-18549006 Msa0943170:intron 40.0%
! ATGGTGGAAAACATGCTTAG+GGG - chr6_3:18548988-18549007 Msa0943170:intron 40.0%
CTTTGTTGCAGGACTGTTAT+TGG - chr6_3:18549593-18549612 Msa0943170:intron 40.0%
ATTGGAATCAGATGCAAGGA+TGG - chr6_3:18549611-18549630 Msa0943170:intron 40.0%
!!! CCGAAAGCATCATTTTCGAA+GGG + chr6_3:18549759-18549778 None:intergenic 40.0%
CCCTTCGAAAATGATGCTTT+CGG - chr6_3:18549756-18549775 Msa0943170:intron 40.0%
CCTTCGAAAATGATGCTTTC+GGG - chr6_3:18549757-18549776 Msa0943170:intron 40.0%
AACGGCGTGAATTCTTCTAT+TGG + chr6_3:18549785-18549804 None:intergenic 40.0%
! AACAAAGTACCATTCCAGAG+TGG + chr6_3:18549813-18549832 None:intergenic 40.0%
CAGTAGCATTAAGTAGAAGC+AGG - chr6_3:18550064-18550083 Msa0943170:intron 40.0%
TAAGTAGAAGCAGGGTTCTA+AGG - chr6_3:18550073-18550092 Msa0943170:intron 40.0%
TTAAGTTCTTGTGTGCACCT+GGG - chr6_3:18550266-18550285 Msa0943170:intron 40.0%
! TTCCAATTTTAGGCTGTAGC+AGG - chr6_3:18550463-18550482 Msa0943170:intron 40.0%
ATCCTGCTACAGCCTAAAAT+TGG + chr6_3:18550468-18550487 None:intergenic 40.0%
GCAGAATAGTTGCAAGCAAA+TGG + chr6_3:18550559-18550578 None:intergenic 40.0%
GCATCCAATTCAATCACAGA+TGG + chr6_3:18550609-18550628 None:intergenic 40.0%
TGTTCTATCCTAACACGTGT+CGG - chr6_3:18551190-18551209 Msa0943170:intron 40.0%
! TAATCTTGCTGCAGACCTTT+TGG - chr6_3:18551238-18551257 Msa0943170:intron 40.0%
AGTATGACACCACATCCAAA+AGG + chr6_3:18551256-18551275 None:intergenic 40.0%
!! TTTGGATGTGGTGTCATACT+AGG - chr6_3:18551256-18551275 Msa0943170:intron 40.0%
!!! AGGTATTTTGGTGCTGCAAT+CGG - chr6_3:18551459-18551478 Msa0943170:intron 40.0%
! CTTTGAGTTCTGGTTACATG+GGG - chr6_3:18551692-18551711 Msa0943170:intron 40.0%
! ACATGGATTGTACCAGAGAA+GGG + chr6_3:18551829-18551848 None:intergenic 40.0%
! AACATGGATTGTACCAGAGA+AGG + chr6_3:18551830-18551849 None:intergenic 40.0%
CTTCAAAAGAAGAGCCACTA+AGG + chr6_3:18551904-18551923 None:intergenic 40.0%
! GCTACTGCCATTGTGTTTTA+GGG - chr6_3:18551946-18551965 Msa0943170:intron 40.0%
!! AATAAGTGTTGAACAGAGGG+AGG - chr6_3:18552120-18552139 Msa0943170:CDS 40.0%
!! ATAAGTGTTGAACAGAGGGA+GGG - chr6_3:18552121-18552140 Msa0943170:CDS 40.0%
GGAGGGTAGTTCAATAAGTA+GGG - chr6_3:18552138-18552157 Msa0943170:CDS 40.0%
! AGCGAGATTGAGAGTTGATT+TGG - chr6_3:18552196-18552215 Msa0943170:intron 40.0%
CTAGGTAGGATCAATTGTCA+TGG + chr6_3:18552240-18552259 None:intergenic 40.0%
! CAATTGAACCTTTTCTCGCT+AGG + chr6_3:18552258-18552277 None:intergenic 40.0%
ATTTCGAACTCGAAATGAGC+TGG - chr6_3:18552684-18552703 Msa0943170:intron 40.0%
TTTCGAACTCGAAATGAGCT+GGG - chr6_3:18552685-18552704 Msa0943170:intron 40.0%
ACCGTCAACATGAAAAGGTA+AGG - chr6_3:18552723-18552742 Msa0943170:intron 40.0%
! GCCTTACCTTTTCATGTTGA+CGG + chr6_3:18552727-18552746 None:intergenic 40.0%
TCAACATGAAAAGGTAAGGC+AGG - chr6_3:18552727-18552746 Msa0943170:intron 40.0%
CAACATGAAAAGGTAAGGCA+GGG - chr6_3:18552728-18552747 Msa0943170:intron 40.0%
ATGCATTTCAACAGGGATTG+TGG + chr6_3:18552938-18552957 None:intergenic 40.0%
CTACGAAATTAATCGTGTGC+AGG - chr6_3:18553016-18553035 Msa0943170:intron 40.0%
AGCTAATTTAGCTGCTGTCT+TGG + chr6_3:18553066-18553085 None:intergenic 40.0%
CACAGCAACAGAAATCAACA+AGG + chr6_3:18553237-18553256 None:intergenic 40.0%
!! CTTGTTGATTTCTGTTGCTG+TGG - chr6_3:18553235-18553254 Msa0943170:intron 40.0%
GTCACTACTTTCTCTCCTGA+TGG - chr6_3:18548593-18548612 Msa0943170:three_prime_UTR 45.0%
CTTTGGCAGCATATTCGATC+TGG + chr6_3:18548628-18548647 None:intergenic 45.0%
CCAAAGCTGTCGACAATAGT+GGG - chr6_3:18548642-18548661 Msa0943170:three_prime_UTR 45.0%
TGGTGGAAAACATGCTTAGG+GGG - chr6_3:18548989-18549008 Msa0943170:intron 45.0%
GAAAACATGCTTAGGGGGTT+TGG - chr6_3:18548994-18549013 Msa0943170:intron 45.0%
AAGCCTTTACCCACTAAGTG+GGG + chr6_3:18549215-18549234 None:intergenic 45.0%
CAAGCCTTTACCCACTAAGT+GGG + chr6_3:18549216-18549235 None:intergenic 45.0%
!!! CCCGAAAGCATCATTTTCGA+AGG + chr6_3:18549760-18549779 None:intergenic 45.0%
GTTAAGTTCTTGTGTGCACC+TGG - chr6_3:18550265-18550284 Msa0943170:intron 45.0%
TAAGTTCTTGTGTGCACCTG+GGG - chr6_3:18550267-18550286 Msa0943170:intron 45.0%
ATGGAAGGCAAATTGTTGCC+AGG - chr6_3:18550497-18550516 Msa0943170:intron 45.0%
TGGAAGGCAAATTGTTGCCA+GGG - chr6_3:18550498-18550517 Msa0943170:intron 45.0%
CTGAAGCTACTAACTACGAC+AGG - chr6_3:18550527-18550546 Msa0943170:intron 45.0%
CTAAGATGACGTGTTAGAGG+TGG - chr6_3:18550751-18550770 Msa0943170:intron 45.0%
GCAAGTTCCTTGACAGGAAT+TGG + chr6_3:18551090-18551109 None:intergenic 45.0%
TGCACCTCTGCACATTATAC+TGG - chr6_3:18551130-18551149 Msa0943170:intron 45.0%
ACCTCTGCACATTATACTGG+TGG - chr6_3:18551133-18551152 Msa0943170:intron 45.0%
! TGAAGTATCCGACACGTGTT+AGG + chr6_3:18551201-18551220 None:intergenic 45.0%
CTAGGTGGTTACGATAGAGA+TGG - chr6_3:18551274-18551293 Msa0943170:intron 45.0%
AGATGGACCACAGTTGTACA+TGG - chr6_3:18551291-18551310 Msa0943170:intron 45.0%
TTGTACATGGTCGAACCTTC+TGG - chr6_3:18551304-18551323 Msa0943170:intron 45.0%
CTCACATAAGAGACACCAGA+AGG + chr6_3:18551322-18551341 None:intergenic 45.0%
!!! GGTATTTTGGTGCTGCAATC+GGG - chr6_3:18551460-18551479 Msa0943170:intron 45.0%
! AGGGGGGGTATAAGAAAACA+TGG + chr6_3:18551846-18551865 None:intergenic 45.0%
GGTTTCAAAGCGCACAAGTA+GGG + chr6_3:18551883-18551902 None:intergenic 45.0%
AGGTTTCAAAGCGCACAAGT+AGG + chr6_3:18551884-18551903 None:intergenic 45.0%
!! TGTGCGCTTTGAAACCTTAG+TGG - chr6_3:18551887-18551906 Msa0943170:intron 45.0%
!! TGCAAGTTTTGTCCCGTATG+AGG - chr6_3:18551924-18551943 Msa0943170:intron 45.0%
ACAATGGCAGTAGCCTCATA+CGG + chr6_3:18551940-18551959 None:intergenic 45.0%
! GGCTACTGCCATTGTGTTTT+AGG - chr6_3:18551945-18551964 Msa0943170:intron 45.0%
!!! ACTGCCATTGTGTTTTAGGG+AGG - chr6_3:18551949-18551968 Msa0943170:intron 45.0%
!!! CTGCCATTGTGTTTTAGGGA+GGG - chr6_3:18551950-18551969 Msa0943170:intron 45.0%
GTACCCTCCCTAAAACACAA+TGG + chr6_3:18551956-18551975 None:intergenic 45.0%
!!! ACTCGGCCCCATCATTTTTT+TGG - chr6_3:18552039-18552058 Msa0943170:intron 45.0%
!!! CTCGGCCCCATCATTTTTTT+GGG - chr6_3:18552040-18552059 Msa0943170:intron 45.0%
GGGAGGGTAGTTCAATAAGT+AGG - chr6_3:18552137-18552156 Msa0943170:CDS 45.0%
TGATCCTACCTAGCGAGAAA+AGG - chr6_3:18552247-18552266 Msa0943170:intron 45.0%
! TGAACCTTTTCTCGCTAGGT+AGG + chr6_3:18552254-18552273 None:intergenic 45.0%
TTCAATAACTCCTTGTCGGC+AGG + chr6_3:18552520-18552539 None:intergenic 45.0%
CAAATGTTGCCATAATGCCG+CGG + chr6_3:18553340-18553359 None:intergenic 45.0%
!!! ATTTTTTTAGATATTAATAA+TGG - chr6_3:18548857-18548876 Msa0943170:CDS 5.0%
!!! TTTTTTTAGATATTAATAAT+GGG - chr6_3:18548858-18548877 Msa0943170:CDS 5.0%
ATCTGGAAAACGCGACCATC+AGG + chr6_3:18548611-18548630 None:intergenic 50.0%
GCCAAAGCTGTCGACAATAG+TGG - chr6_3:18548641-18548660 Msa0943170:three_prime_UTR 50.0%
CCCACTATTGTCGACAGCTT+TGG + chr6_3:18548645-18548664 None:intergenic 50.0%
!! AGCTGTCGACAATAGTGGGT+AGG - chr6_3:18548646-18548665 Msa0943170:three_prime_UTR 50.0%
!! GCTGTCGACAATAGTGGGTA+GGG - chr6_3:18548647-18548666 Msa0943170:three_prime_UTR 50.0%
GGGGATAGTCAGATCACTAG+AGG - chr6_3:18549069-18549088 Msa0943170:intron 50.0%
! AGTCCCCACTTAGTGGGTAA+AGG - chr6_3:18549209-18549228 Msa0943170:CDS 50.0%
CCAAGCCTTTACCCACTAAG+TGG + chr6_3:18549217-18549236 None:intergenic 50.0%
! CCACTTAGTGGGTAAAGGCT+TGG - chr6_3:18549214-18549233 Msa0943170:CDS 50.0%
CATTCCAGAGTGGCGATGAA+CGG + chr6_3:18549803-18549822 None:intergenic 50.0%
!! GTAGCAGGATTAGCTGCAGA+TGG - chr6_3:18550478-18550497 Msa0943170:intron 50.0%
!! CAGGATTAGCTGCAGATGGA+AGG - chr6_3:18550482-18550501 Msa0943170:intron 50.0%
AGTAGCTTCAGACTTAGCCC+TGG + chr6_3:18550518-18550537 None:intergenic 50.0%
CGGTGATCCAATTCCTGTCA+AGG - chr6_3:18551080-18551099 Msa0943170:intron 50.0%
CGATCAGCAAGTTCCTTGAC+AGG + chr6_3:18551096-18551115 None:intergenic 50.0%
GCCACCAGTATAATGTGCAG+AGG + chr6_3:18551137-18551156 None:intergenic 50.0%
GCACATTATACTGGTGGCTC+AGG - chr6_3:18551139-18551158 Msa0943170:intron 50.0%
! TGCTGCAGACCTTTTGGATG+TGG - chr6_3:18551244-18551263 Msa0943170:intron 50.0%
!! GGATGTGGTGTCATACTAGG+TGG - chr6_3:18551259-18551278 Msa0943170:intron 50.0%
GGTTCGACCATGTACAACTG+TGG + chr6_3:18551301-18551320 None:intergenic 50.0%
!!! TTTTGGTGCTGCAATCGGGA+AGG - chr6_3:18551464-18551483 Msa0943170:intron 50.0%
!! TTTGGTGCTGCAATCGGGAA+GGG - chr6_3:18551465-18551484 Msa0943170:intron 50.0%
ACAGGCTGCGAAAACGTAAG+TGG - chr6_3:18551491-18551510 Msa0943170:intron 50.0%
ATTGTACCAGAGAAGGGCTG+AGG + chr6_3:18551823-18551842 None:intergenic 50.0%
TAGGGTGAGGCATGAGCAAA+GGG + chr6_3:18551865-18551884 None:intergenic 50.0%
CAATGGCAGTAGCCTCATAC+GGG + chr6_3:18551939-18551958 None:intergenic 50.0%
TGGAGTTCATGACGAGGCAA+AGG - chr6_3:18552655-18552674 Msa0943170:intron 50.0%
TAATCGTGTGCAGGTTCCAG+AGG - chr6_3:18553025-18553044 Msa0943170:intron 50.0%
! GCTTCTTCTAGAAGCTCCTC+TGG + chr6_3:18553044-18553063 None:intergenic 50.0%
CGCGGCATTATGGCAACATT+TGG - chr6_3:18553338-18553357 Msa0943170:CDS 50.0%
ACTAAGTGGGGACTGCCAGA+TGG + chr6_3:18549203-18549222 None:intergenic 55.0%
ATCTGGCAGTCCCCACTTAG+TGG - chr6_3:18549202-18549221 Msa0943170:CDS 55.0%
TCTGGCAGTCCCCACTTAGT+GGG - chr6_3:18549203-18549222 Msa0943170:CDS 55.0%
! CGTTCATCGCCACTCTGGAA+TGG - chr6_3:18549801-18549820 Msa0943170:intron 55.0%
!! CAAGGAACTTGCTGATCGCG+TGG - chr6_3:18551098-18551117 Msa0943170:intron 55.0%
! TGTGCAGAGGTGCACGTAAC+TGG + chr6_3:18551124-18551143 None:intergenic 55.0%
TGTGTTCCTCAGCCCTTCTC+TGG - chr6_3:18551814-18551833 Msa0943170:intron 55.0%
AGGGTGAGGCATGAGCAAAG+GGG + chr6_3:18551864-18551883 None:intergenic 55.0%
GTAGGGTGAGGCATGAGCAA+AGG + chr6_3:18551866-18551885 None:intergenic 55.0%
CAAAGCGCACAAGTAGGGTG+AGG + chr6_3:18551878-18551897 None:intergenic 55.0%
TGGTCTTCTCCACTTGTCCG+CGG - chr6_3:18553320-18553339 Msa0943170:CDS 55.0%
TCCACTTGTCCGCGGCATTA+TGG - chr6_3:18553328-18553347 Msa0943170:CDS 55.0%
GCTGCTTAGTGCATTGCCCC+AGG + chr6_3:18550286-18550305 None:intergenic 60.0%
TGCAATCGGGAAGGGCAGAC+AGG - chr6_3:18551473-18551492 Msa0943170:intron 60.0%
GTGAGGCATGAGCAAAGGGG+GGG + chr6_3:18551861-18551880 None:intergenic 60.0%
GGTGAGGCATGAGCAAAGGG+GGG + chr6_3:18551862-18551881 None:intergenic 60.0%
GGGTGAGGCATGAGCAAAGG+GGG + chr6_3:18551863-18551882 None:intergenic 60.0%
GCGGATATGACCTGCCGACA+AGG - chr6_3:18552507-18552526 Msa0943170:intron 60.0%
GCCATAATGCCGCGGACAAG+TGG + chr6_3:18553332-18553351 None:intergenic 60.0%
CACGCCGTTCATCGCCACTC+TGG - chr6_3:18549796-18549815 Msa0943170:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 18548465 18553473 18548465 ID=Msa0943170;Name=Msa0943170
chr6_3 mRNA 18548465 18553473 18548465 ID=Msa0943170-mRNA-1;Parent=Msa0943170;Name=Msa0943170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=95|1|1|1|1|1|10|364|249
chr6_3 exon 18548465 18548900 18548465 ID=Msa0943170-mRNA-1:exon:5574;Parent=Msa0943170-mRNA-1
chr6_3 exon 18549199 18549289 18549199 ID=Msa0943170-mRNA-1:exon:5573;Parent=Msa0943170-mRNA-1
chr6_3 exon 18549388 18549453 18549388 ID=Msa0943170-mRNA-1:exon:5572;Parent=Msa0943170-mRNA-1
chr6_3 exon 18550433 18550479 18550433 ID=Msa0943170-mRNA-1:exon:5571;Parent=Msa0943170-mRNA-1
chr6_3 exon 18550602 18550686 18550602 ID=Msa0943170-mRNA-1:exon:5570;Parent=Msa0943170-mRNA-1
chr6_3 exon 18550778 18550864 18550778 ID=Msa0943170-mRNA-1:exon:5569;Parent=Msa0943170-mRNA-1
chr6_3 exon 18551390 18551463 18551390 ID=Msa0943170-mRNA-1:exon:5568;Parent=Msa0943170-mRNA-1
chr6_3 exon 18552116 18552199 18552116 ID=Msa0943170-mRNA-1:exon:5567;Parent=Msa0943170-mRNA-1
chr6_3 exon 18552295 18552334 18552295 ID=Msa0943170-mRNA-1:exon:5566;Parent=Msa0943170-mRNA-1
chr6_3 exon 18553275 18553473 18553275 ID=Msa0943170-mRNA-1:exon:5565;Parent=Msa0943170-mRNA-1
chr6_3 five_prime_UTR 18553379 18553473 18553379 ID=Msa0943170-mRNA-1:five_prime_utr;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18553275 18553378 18553275 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18552295 18552334 18552295 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18552116 18552199 18552116 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18551390 18551463 18551390 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18550778 18550864 18550778 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18550602 18550686 18550602 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18550433 18550479 18550433 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18549388 18549453 18549388 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18549199 18549289 18549199 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 CDS 18548829 18548900 18548829 ID=Msa0943170-mRNA-1:cds;Parent=Msa0943170-mRNA-1
chr6_3 three_prime_UTR 18548465 18548828 18548465 ID=Msa0943170-mRNA-1:three_prime_utr;Parent=Msa0943170-mRNA-1
Gene Sequence

>Msa0943170

ATGAGTAGCATTGGAACAGGCTACGATCTATCCGTCACTACTTTCTCTCCTGATGGTCGCGTTTTCCAGATCGAATATGCTGCCAAAGCTGTCGACAATAGTGGGACTGTTATTGGAATCAGATGCAAGGATGGAATTGTTTTGGGTGTCGAGAAGCTTATCCCTTCGAAAATGATGCTTTCGGGTTCCAATAGAAGAATTCACGCCGTTCATCGCCACTCTGGAATGGCTGTAGCAGGATTAGCTGCAGATGGAAGGCAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTACGACAGTGTGTACGGTGATCCAATTCCTGTCAAGGAACTTGCTGATCGCGTGGCCAGTTACGTGCACCTCTGCACATTATACTGGTGGCTCAGACCTTTTGGATGTGGTGTCATACTAGGTGGTTACGATAGAGATGGACCACAGTTGTACATGGTCGAACCTTCTGGTGTCTCTTATAGGTATTTTGGTGCTGCAATCGGGAAGGGCAGACAGGCTGCGAAAACGGAGATTGAAAAGTTGAAGCTTGCGGATATGACCTGCCGACAAGGAGTTATTGAAGTAGCTAAGATTATATATGGAGTTCATGACGAGGCAAAGGATAAAGATTTCGAACTCGAAATGAGCTGGGTGTGCGATGAATCAAACCGTCAACATGAAAAGGTTCCAGAGGAGCTTCTAGAAGAAGCCAAGACAGCAGCTAAATTAGCTCTTGAAGAAATGGATGCAGATTAA

Protein sequence

>Msa0943170

MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIRCKDGIVLGVEKLIPSKMMLSGSNRRIHAVHRHSGMAVAGLAADGRQIVARAKSEATNYDSVYGDPIPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGVSYRYFGAAIGKGRQAAKTEIEKLKLADMTCRQGVIEVAKIIYGVHDEAKDKDFELEMSWVCDESNRQHEKVPEELLEEAKTAAKLALEEMDAD*