AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0484740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484740 MtrunA17_Chr1g0212521 99.535 215 1 0 1 215 1 215 1.17e-160 442
Msa0484740 MtrunA17_Chr1g0182321 91.163 215 19 0 1 215 1 215 1.01e-148 412
Msa0484740 MtrunA17_Chr1g0182301 90.698 215 20 0 1 215 1 215 5.29e-148 410
Msa0484740 MtrunA17_Chr4g0030911 93.659 205 12 1 11 215 11 214 2.86e-141 393
Msa0484740 MtrunA17_Chr7g0263071 94.146 205 12 0 11 215 11 215 1.32e-138 386
Msa0484740 MtrunA17_Chr2g0327911 75.814 215 46 4 4 215 2 213 1.12e-115 328
Msa0484740 MtrunA17_Chr7g0250531 60.194 206 73 3 10 214 3 200 9.51e-87 254
Msa0484740 MtrunA17_Chr4g0055651 58.537 205 76 3 11 214 4 200 2.27e-85 251
Msa0484740 MtrunA17_Chr8g0335471 59.223 206 74 3 11 214 4 201 6.04e-84 248
Msa0484740 MtrunA17_Chr2g0276931 54.146 205 88 2 11 215 5 203 1.35e-78 234
Msa0484740 MtrunA17_Chr6g0458081 48.325 209 101 4 12 214 3 210 1.65e-61 191
Msa0484740 MtrunA17_Chr2g0290891 46.890 209 104 3 12 214 3 210 1.24e-60 189
Msa0484740 MtrunA17_Chr4g0032201 45.370 216 104 5 7 214 4 213 4.25e-60 187
Msa0484740 MtrunA17_Chr3g0112681 44.811 212 104 4 11 214 8 214 2.29e-59 186
Msa0484740 MtrunA17_Chr2g0283131 44.907 216 106 3 7 214 5 215 2.42e-58 183
Msa0484740 MtrunA17_Chr4g0046261 43.056 216 110 3 7 214 5 215 3.84e-57 180
Msa0484740 MtrunA17_Chr4g0040781 43.519 216 109 3 7 214 5 215 1.78e-56 178
Msa0484740 MtrunA17_Chr2g0276941 44.498 209 110 4 11 214 11 218 3.39e-56 177
Msa0484740 MtrunA17_Chr2g0315551 43.721 215 116 2 4 214 2 215 4.43e-56 177
Msa0484740 MtrunA17_Chr7g0265001 46.154 208 100 5 12 214 13 213 2.28e-55 175
Msa0484740 MtrunA17_Chr8g0349711 44.286 210 105 4 14 214 5 211 2.44e-55 175
Msa0484740 MtrunA17_Chr1g0180291 48.293 205 99 6 12 214 11 210 3.43e-55 175
Msa0484740 MtrunA17_Chr1g0189361 43.519 216 103 4 13 214 12 222 5.03e-55 175
Msa0484740 MtrunA17_Chr3g0123821 42.105 209 113 3 13 214 14 221 2.84e-54 173
Msa0484740 MtrunA17_Chr2g0319951 49.425 174 87 1 4 177 2 174 1.15e-53 171
Msa0484740 MtrunA17_Chr3g0130271 45.411 207 104 6 11 214 8 208 2.10e-53 170
Msa0484740 MtrunA17_Chr8g0381841 48.485 165 84 1 13 177 15 178 3.14e-53 170
Msa0484740 MtrunA17_Chr1g0159481 45.933 209 100 7 11 214 13 213 3.75e-53 170
Msa0484740 MtrunA17_Chr1g0197331 43.779 217 113 6 1 214 1 211 4.40e-53 169
Msa0484740 MtrunA17_Chr8g0384311 43.128 211 112 5 6 214 4 208 1.13e-52 168
Msa0484740 MtrunA17_Chr7g0234201 41.667 204 115 2 14 214 12 214 1.21e-52 168
Msa0484740 MtrunA17_Chr8g0349681 47.429 175 91 1 9 183 378 551 6.80e-52 176
Msa0484740 MtrunA17_Chr8g0349681 44.681 188 97 3 12 195 172 356 1.38e-48 167
Msa0484740 MtrunA17_Chr8g0349681 49.045 157 79 1 14 170 12 167 6.67e-46 160
Msa0484740 MtrunA17_Chr2g0325091 42.308 208 114 3 11 214 7 212 3.70e-51 164
Msa0484740 MtrunA17_Chr7g0214241 40.097 207 117 3 14 214 14 219 5.63e-51 164
Msa0484740 MtrunA17_Chr8g0346421 46.667 165 87 1 13 177 24 187 1.52e-50 164
Msa0484740 MtrunA17_Chr8g0351861 41.395 215 111 3 13 214 14 226 2.61e-50 163
Msa0484740 MtrunA17_Chr1g0174281 39.815 216 112 3 13 215 13 223 4.38e-50 162
Msa0484740 MtrunA17_Chr6g0482721 41.429 210 110 4 13 214 10 214 2.07e-49 160
Msa0484740 MtrunA17_Chr7g0275991 42.775 173 98 1 7 179 12 183 9.96e-49 159
Msa0484740 MtrunA17_Chr7g0231131 45.455 165 89 1 13 177 13 176 3.26e-47 155
Msa0484740 MtrunA17_Chr8g0392931 41.546 207 115 3 13 214 12 217 2.88e-46 152
Msa0484740 MtrunA17_Chr8g0390561 39.698 199 109 4 17 215 11 198 5.27e-45 148
Msa0484740 MtrunA17_Chr1g0199331 44.242 165 90 2 16 179 32 195 5.61e-45 148
Msa0484740 MtrunA17_Chr3g0109721 38.384 198 112 4 17 214 12 199 3.30e-44 146
Msa0484740 MtrunA17_Chr5g0433561 38.889 198 111 4 17 214 12 199 1.55e-43 144
Msa0484740 MtrunA17_Chr8g0382221 37.879 198 119 3 17 213 11 205 6.30e-42 140
Msa0484740 MtrunA17_Chr5g0400131 36.967 211 125 4 4 213 2 205 2.99e-41 139
Msa0484740 MtrunA17_Chr4g0034871 39.706 204 103 7 5 192 2 201 2.26e-40 137
Msa0484740 MtrunA17_Chr4g0055081 35.377 212 129 4 4 214 2 206 4.32e-40 136
Msa0484740 MtrunA17_Chr3g0123971 36.548 197 122 2 17 213 11 204 4.81e-40 136
Msa0484740 MtrunA17_Chr8g0383261 35.122 205 118 3 15 213 12 207 1.41e-36 127
Msa0484740 MtrunA17_Chr2g0331691 35.922 206 118 4 15 214 10 207 5.07e-36 125
Msa0484740 MtrunA17_Chr4g0004661 35.122 205 120 4 15 213 64 261 8.17e-36 127
Msa0484740 MtrunA17_Chr6g0466301 39.521 167 95 3 15 175 8 174 8.45e-36 125
Msa0484740 MtrunA17_Chr6g0465491 39.521 167 95 3 15 175 8 174 8.45e-36 125
Msa0484740 MtrunA17_Chr1g0201121 35.149 202 121 4 15 208 8 207 2.92e-35 124
Msa0484740 MtrunA17_Chr2g0325101 32.934 167 99 5 15 170 6 170 2.44e-26 100
Msa0484740 MtrunA17_Chr4g0037021 34.091 176 103 6 15 179 6 179 6.23e-26 99.4
Msa0484740 MtrunA17_Chr3g0117931 32.335 167 100 5 15 170 8 172 2.15e-25 98.6
Msa0484740 MtrunA17_Chr1g0178291 40.741 162 88 3 18 179 431 584 2.23e-25 103
Msa0484740 MtrunA17_Chr6g0466161 37.333 150 88 3 32 175 7 156 2.57e-25 98.2
Msa0484740 MtrunA17_Chr6g0465471 37.333 150 88 3 32 175 7 156 2.73e-25 98.2
Msa0484740 MtrunA17_Chr3g0138121 28.910 211 140 6 3 208 2 207 3.26e-25 98.2
Msa0484740 MtrunA17_Chr3g0138111 28.638 213 135 6 3 203 2 209 3.95e-25 98.2
Msa0484740 MtrunA17_Chr3g0138101 28.638 213 135 6 3 203 2 209 4.72e-25 97.8
Msa0484740 MtrunA17_Chr8g0371501 32.335 167 100 6 15 170 6 170 5.37e-24 94.4
Msa0484740 MtrunA17_Chr6g0486041 31.138 167 102 5 15 170 6 170 1.09e-23 94.0
Msa0484740 MtrunA17_Chr5g0405791 32.335 167 100 6 15 170 6 170 1.35e-23 93.6
Msa0484740 MtrunA17_Chr4g0046211 35.484 124 77 3 15 137 6 127 4.59e-23 90.5
Msa0484740 MtrunA17_Chr6g0466431 35.789 95 52 1 15 109 8 93 5.94e-17 73.2
Msa0484740 MtrunA17_Chr6g0465611 35.789 95 52 1 15 109 8 93 5.94e-17 73.2
Msa0484740 MtrunA17_Chr5g0443631 25.466 161 111 3 16 170 105 262 1.48e-12 65.1
Msa0484740 MtrunA17_Chr5g0434561 29.878 164 96 6 16 170 20 173 1.19e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484740 AT5G59840.1 92.683 205 15 0 11 215 11 215 1.11e-141 394
Msa0484740 AT3G46060.2 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa0484740 AT3G46060.3 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa0484740 AT3G46060.1 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa0484740 AT3G53610.2 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa0484740 AT3G53610.3 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa0484740 AT3G53610.1 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa0484740 AT5G03520.1 85.981 214 29 1 1 214 1 213 5.31e-130 365
Msa0484740 AT3G09900.1 84.186 215 33 1 1 214 1 215 1.41e-127 359
Msa0484740 AT5G03520.2 80.114 176 34 1 39 214 29 203 7.03e-102 293
Msa0484740 AT1G02130.1 59.903 207 73 3 10 214 3 201 3.18e-88 259
Msa0484740 AT4G17530.1 57.767 206 78 3 10 214 3 200 6.43e-83 245
Msa0484740 AT5G47200.1 57.767 206 78 3 10 214 3 200 2.47e-82 244
Msa0484740 AT3G11730.1 56.938 209 78 4 11 215 4 204 8.92e-81 240
Msa0484740 AT4G35860.1 49.524 210 99 4 12 215 3 211 1.03e-65 202
Msa0484740 AT4G17170.1 47.143 210 104 3 12 215 3 211 1.53e-62 194
Msa0484740 AT4G17160.1 47.573 206 103 3 12 215 3 205 3.52e-62 192
Msa0484740 AT1G09630.1 44.340 212 113 2 7 214 4 214 3.37e-59 186
Msa0484740 AT4G18430.1 44.444 216 107 3 7 214 5 215 2.26e-58 183
Msa0484740 AT1G16920.1 45.413 218 107 4 4 214 2 214 9.32e-58 182
Msa0484740 AT5G59150.1 42.202 218 110 3 7 214 4 215 3.39e-57 180
Msa0484740 AT1G07410.1 41.905 210 119 2 7 214 4 212 6.85e-57 179
Msa0484740 AT5G60860.1 43.379 219 111 3 4 214 2 215 9.96e-57 179
Msa0484740 AT3G46830.1 49.708 171 85 1 7 177 4 173 4.46e-56 177
Msa0484740 AT3G46830.2 49.708 171 85 1 7 177 4 173 4.46e-56 177
Msa0484740 AT3G15060.1 44.091 220 108 4 4 214 2 215 6.19e-56 177
Msa0484740 AT5G47520.1 44.601 213 102 5 13 214 12 219 2.96e-55 176
Msa0484740 AT5G45750.1 42.056 214 120 2 4 214 2 214 3.69e-55 175
Msa0484740 AT2G33870.1 43.119 218 110 4 7 215 5 217 1.08e-54 174
Msa0484740 AT4G39990.1 43.750 208 110 3 13 214 15 221 3.82e-54 173
Msa0484740 AT4G18800.1 42.453 212 120 2 4 214 2 212 6.66e-54 172
Msa0484740 AT1G28550.1 42.857 217 110 4 7 214 5 216 7.77e-54 172
Msa0484740 AT2G43130.1 40.686 204 118 2 13 214 10 212 9.13e-54 171
Msa0484740 AT1G06400.1 42.056 214 120 2 4 214 2 214 1.42e-53 171
Msa0484740 AT1G01200.1 47.337 169 89 0 13 181 26 194 6.44e-53 170
Msa0484740 AT3G07410.1 49.697 165 82 1 13 177 10 173 9.88e-53 169
Msa0484740 AT1G05810.1 41.063 207 116 3 13 214 10 215 3.40e-52 167
Msa0484740 AT1G43890.3 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa0484740 AT1G43890.1 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa0484740 AT1G43890.2 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa0484740 AT1G05810.2 41.063 207 116 3 13 214 56 261 1.07e-51 168
Msa0484740 AT5G47960.1 48.485 165 84 1 13 177 13 176 1.43e-51 166
Msa0484740 AT2G31680.1 47.273 165 86 1 13 177 10 173 1.45e-51 166
Msa0484740 AT1G18200.1 49.133 173 87 1 13 185 11 182 5.17e-51 165
Msa0484740 AT5G03530.2 45.024 211 105 6 8 214 6 209 7.18e-51 164
Msa0484740 AT5G03530.1 45.024 211 105 6 8 214 6 209 7.18e-51 164
Msa0484740 AT5G65270.1 40.758 211 115 4 13 214 15 224 7.97e-51 164
Msa0484740 AT1G73640.1 46.809 188 95 2 13 196 11 197 2.40e-50 163
Msa0484740 AT3G12160.1 40.670 209 117 2 13 215 13 220 4.43e-50 162
Msa0484740 AT3G54840.1 44.382 178 94 3 3 179 24 197 3.49e-48 157
Msa0484740 AT3G54840.2 46.154 169 86 3 3 170 24 188 1.30e-47 155
Msa0484740 AT3G54840.3 44.767 172 89 3 18 188 2 168 1.10e-46 152
Msa0484740 AT4G35860.2 47.879 165 79 4 57 215 2 165 7.90e-46 150
Msa0484740 AT3G09910.5 44.792 192 102 4 8 197 6 195 1.06e-44 148
Msa0484740 AT3G09910.4 44.792 192 102 4 8 197 6 195 1.06e-44 148
Msa0484740 AT4G19640.1 39.196 199 111 4 17 215 12 200 7.68e-43 143
Msa0484740 AT3G09910.3 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa0484740 AT3G09910.1 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa0484740 AT3G09910.2 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa0484740 AT2G44610.1 37.559 213 125 4 4 215 2 207 1.04e-41 140
Msa0484740 AT5G45130.1 37.000 200 114 4 17 215 12 200 1.20e-41 140
Msa0484740 AT5G10260.1 37.186 199 122 2 17 215 11 206 5.52e-41 139
Msa0484740 AT3G18820.1 42.135 178 93 4 5 176 2 175 5.60e-41 139
Msa0484740 AT4G39890.1 43.396 159 88 2 17 174 11 168 5.90e-41 139
Msa0484740 AT2G22290.1 36.869 198 122 2 17 214 11 205 1.28e-40 138
Msa0484740 AT5G45130.2 36.364 198 114 4 19 215 22 208 7.99e-40 135
Msa0484740 AT5G59150.2 39.881 168 85 3 57 214 3 164 1.13e-37 129
Msa0484740 AT1G52280.1 37.073 205 115 4 15 213 8 204 1.79e-37 130
Msa0484740 AT4G09720.1 39.378 193 101 4 15 191 8 200 1.83e-37 129
Msa0484740 AT1G49300.2 37.624 202 107 6 5 191 2 199 2.10e-37 129
Msa0484740 AT1G49300.1 37.624 202 107 6 5 191 2 199 2.10e-37 129
Msa0484740 AT5G64990.1 41.401 157 91 1 17 173 9 164 2.04e-36 127
Msa0484740 AT1G22740.1 40.719 167 93 3 15 175 8 174 4.60e-36 126
Msa0484740 AT3G16100.1 41.071 168 93 2 15 176 8 175 4.88e-36 126
Msa0484740 AT4G09720.4 38.889 198 100 5 15 191 8 205 1.36e-35 125
Msa0484740 AT2G21880.1 37.725 167 98 2 15 175 9 175 4.56e-35 124
Msa0484740 AT4G09720.3 37.255 204 101 5 15 191 8 211 3.78e-34 121
Msa0484740 AT5G64990.2 39.634 164 91 2 17 173 9 171 1.11e-33 120
Msa0484740 AT5G39620.1 38.462 169 92 3 16 175 6 171 1.22e-33 120
Msa0484740 AT4G19640.2 39.669 121 73 0 17 137 12 132 2.24e-30 110
Msa0484740 AT4G19640.3 39.669 121 73 0 17 137 12 132 1.26e-29 109
Msa0484740 AT4G09720.6 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa0484740 AT4G09720.5 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa0484740 AT4G09720.2 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa0484740 AT4G35020.1 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa0484740 AT4G35020.2 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa0484740 AT4G35020.3 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa0484740 AT2G21880.4 37.324 142 83 2 40 175 9 150 5.87e-27 102
Msa0484740 AT2G21880.3 37.324 142 83 2 40 175 9 150 5.87e-27 102
Msa0484740 AT5G20010.1 28.972 214 142 6 3 212 2 209 2.07e-26 101
Msa0484740 AT3G48040.1 32.934 167 99 5 15 170 8 172 2.32e-26 101
Msa0484740 AT2G44690.1 32.335 167 100 5 15 170 18 182 2.40e-26 101
Msa0484740 AT5G62880.1 31.844 179 109 5 15 182 8 184 4.78e-26 100
Msa0484740 AT5G45970.1 31.138 167 102 5 15 170 6 170 5.99e-26 100
Msa0484740 AT1G20090.1 34.132 167 97 6 15 170 5 169 2.09e-25 98.6
Msa0484740 AT3G51300.1 32.335 167 100 6 15 170 6 170 2.31e-25 98.2
Msa0484740 AT1G75840.1 33.533 167 98 6 15 170 6 170 2.56e-25 98.2
Msa0484740 AT2G21880.2 32.934 167 98 3 15 175 9 167 3.09e-25 98.2
Msa0484740 AT5G55190.1 28.037 214 142 6 3 209 2 210 6.18e-25 97.8
Msa0484740 AT2G17800.2 32.934 167 99 6 15 170 6 170 8.99e-25 96.7
Msa0484740 AT2G17800.1 32.934 167 99 6 15 170 6 170 8.99e-25 96.7
Msa0484740 AT5G55080.1 32.716 162 105 3 16 177 14 171 1.12e-24 97.1
Msa0484740 AT5G20020.1 30.286 175 117 4 3 177 2 171 1.24e-24 97.1
Msa0484740 AT4G28950.1 31.515 165 102 5 15 170 6 168 3.49e-24 95.5
Msa0484740 AT4G35950.1 32.335 167 100 6 15 170 6 170 7.98e-24 94.4
Msa0484740 AT3G48040.2 32.704 159 94 5 15 162 8 164 1.02e-23 93.6
Msa0484740 AT5G62880.2 32.317 164 98 5 15 167 8 169 8.44e-23 91.7
Msa0484740 AT4G35020.4 37.069 116 70 3 15 129 6 119 1.20e-19 82.0
Msa0484740 AT4G35020.5 37.069 116 70 3 15 129 6 119 1.20e-19 82.0
Msa0484740 AT5G46025.1 35.294 102 64 2 77 177 6 106 2.91e-15 69.7
Msa0484740 AT3G51290.2 30.769 143 86 6 44 175 636 776 3.28e-13 68.6
Msa0484740 AT5G37680.1 27.439 164 100 5 16 170 20 173 8.59e-12 62.0
Msa0484740 AT2G15310.1 28.058 139 88 6 16 153 18 145 1.78e-11 61.6

Find 77 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGCATTAAGTTGCAAATT+TGG 0.124150 3_4:+2255590 Msa0484740:CDS
CTTCTTTCTGTTCAGATATT+AGG 0.164910 3_4:+2256144 Msa0484740:intron
TCTTTAGTTTATTACAATTA+TGG 0.168757 3_4:+2253651 None:intergenic
TAACGGAAAGAACCAGTATT+TGG 0.222249 3_4:+2256998 Msa0484740:exon
CTCATCAAGCTTCTTCTTAT+CGG 0.235582 3_4:+2254031 Msa0484740:CDS
GTTGGTTAATCTTGATACTC+TGG 0.323408 3_4:-2256922 None:intergenic
CATTGGCTGCCTGGTCTTGT+TGG 0.332079 3_4:-2256940 None:intergenic
TTACAATTATGGATGCTAAA+TGG 0.341737 3_4:+2253662 None:intergenic
ACGCATTAAGTTGCAAATTT+GGG 0.344668 3_4:+2255591 Msa0484740:CDS
AATCGGCTTGCTGCGGTTAA+CGG 0.352175 3_4:+2256981 Msa0484740:CDS
ACGAATAGCTTCTAACTATT+CGG 0.354488 3_4:+2253916 Msa0484740:five_prime_UTR
TGTGGGAAACAAGGCTGATA+TGG 0.357144 3_4:+2256220 Msa0484740:CDS
TTGGTTAATCTTGATACTCT+GGG 0.358486 3_4:-2256921 None:intergenic
TGGAGCCATGGGTATCTTGC+TGG 0.359100 3_4:+2255816 Msa0484740:CDS
ATATCTTGACAAATAGATTA+TGG 0.365179 3_4:+2257210 Msa0484740:three_prime_UTR
CCTGACCACCATTGGCTGCC+TGG 0.367231 3_4:-2256949 None:intergenic
CCGATCTCTGTGCTGTGCTT+TGG 0.379544 3_4:+2253948 Msa0484740:five_prime_UTR
ATCAGCAAGAGCTTGACCTT+TGG 0.383335 3_4:-2256471 None:intergenic
CAAGCTCTTGCTGATGAGTA+TGG 0.383437 3_4:+2256479 Msa0484740:CDS
ATAAGAACCATTGAACTTGA+TGG 0.385351 3_4:+2255565 Msa0484740:CDS
GAAGAGGGTGGGGCCGAATC+TGG 0.396944 3_4:+2253714 Msa0484740:five_prime_UTR
TAATCGGCACGAGCTCTTGC+AGG 0.397197 3_4:-2254001 None:intergenic
TCTGTTCAGATATTAGGAAT+TGG 0.400880 3_4:+2256150 Msa0484740:intron
CTGATATGGATGAAAGTAAA+CGG 0.401383 3_4:+2256234 Msa0484740:CDS
CCAGGCAGCCAATGGTGGTC+AGG 0.405180 3_4:+2256949 Msa0484740:CDS
AACGGAAAGAACCAGTATTT+GGG 0.406450 3_4:+2256999 Msa0484740:exon
TAACATTAGCACCCAAATAC+TGG 0.409918 3_4:-2257010 None:intergenic
AATTTGGGACACAGCTGGTC+AGG 0.423871 3_4:+2255606 Msa0484740:CDS
AGTTAGAAGCTATTCGTTGT+TGG 0.433064 3_4:-2253910 None:intergenic
CCCAATGGTGGTGATAAAAC+TGG 0.440887 3_4:-2255067 None:intergenic
CTTGATGAGGTAATCGTAAT+CGG 0.447072 3_4:-2254017 None:intergenic
AGCAAGAGCTTGACCTTTGG+AGG 0.448218 3_4:-2256468 None:intergenic
GCGTTTGCCATCAAGTTCAA+TGG 0.456159 3_4:-2255572 None:intergenic
GGGCCGAATCTGGTGTGTGC+AGG 0.458815 3_4:+2253724 Msa0484740:five_prime_UTR
AATGTAAACAAGATACTTGT+GGG 0.475156 3_4:+2256203 Msa0484740:CDS
ACTCCTGCACACACCAGATT+CGG 0.478127 3_4:-2253727 None:intergenic
TCGTTGTTGGCGACATGGAA+TGG 0.479080 3_4:-2253897 None:intergenic
AGCTTATTATCGTGGAGCCA+TGG 0.483620 3_4:+2255804 Msa0484740:intron
TGTGAAGTTGGAAGATAAAG+AGG 0.496857 3_4:-2257072 None:intergenic
CACAGCACAGAGATCGGAAT+CGG 0.499162 3_4:-2253942 None:intergenic
TGATATGGATGAAAGTAAAC+GGG 0.500423 3_4:+2256235 Msa0484740:CDS
TATTCTGATGACAATATTAG+TGG 0.503959 3_4:+2257031 Msa0484740:three_prime_UTR
ACATACCTGTAGTAATAGTT+CGG 0.505948 3_4:-2255636 None:intergenic
TAAAACAAGACATGTGAAGT+TGG 0.515497 3_4:-2257084 None:intergenic
CAAGATACTTGTGGGAAACA+AGG 0.517167 3_4:+2256211 Msa0484740:CDS
TTGTGCAGCCTGACCACCAT+TGG 0.522584 3_4:-2256957 None:intergenic
TTGCAAATTTGGGACACAGC+TGG 0.522901 3_4:+2255601 Msa0484740:CDS
GCTATTCGTTGTTGGCGACA+TGG 0.535062 3_4:-2253902 None:intergenic
CCAAAGCACAGCACAGAGAT+CGG 0.546259 3_4:-2253948 None:intergenic
CTTCTTCTTATCGGCGACAG+TGG 0.546770 3_4:+2254040 Msa0484740:CDS
GTAGTATATTGAAGAGGGTG+GGG 0.550437 3_4:+2253704 Msa0484740:five_prime_UTR
GCTTATTATCGTGGAGCCAT+GGG 0.550907 3_4:+2255805 Msa0484740:intron
CAATGTAAACAAGATACTTG+TGG 0.552374 3_4:+2256202 Msa0484740:CDS
GGTAGTATATTGAAGAGGGT+GGG 0.555056 3_4:+2253703 Msa0484740:five_prime_UTR
TCTGTTGCAGCTTATTATCG+TGG 0.558222 3_4:+2255796 Msa0484740:intron
AGATTCCGAACTATTACTAC+AGG 0.559019 3_4:+2255631 Msa0484740:CDS
AGAGCTTGACCTTTGGAGGT+AGG 0.570506 3_4:-2256464 None:intergenic
CAAGATTAACCAACAAGACC+AGG 0.573376 3_4:+2256931 Msa0484740:CDS
CACAGGTAGTATATTGAAGA+GGG 0.585743 3_4:+2253699 Msa0484740:five_prime_UTR
ACACAGGTAGTATATTGAAG+AGG 0.596277 3_4:+2253698 Msa0484740:five_prime_UTR
AGGTAGTATATTGAAGAGGG+TGG 0.601881 3_4:+2253702 Msa0484740:five_prime_UTR
ATTCTGATGACAATATTAGT+GGG 0.606836 3_4:+2257032 Msa0484740:three_prime_UTR
CAACAAGACCAGGCAGCCAA+TGG 0.612044 3_4:+2256941 Msa0484740:CDS
TACAAATACTAACCCAATGG+TGG 0.615885 3_4:-2255079 None:intergenic
AGACACTGTTTCTAGTACTG+AGG 0.616300 3_4:+2256672 Msa0484740:CDS
TGGTCCAATAAAAGAGACAC+AGG 0.620251 3_4:+2253682 Msa0484740:five_prime_UTR
TAGGCTGTACCTACCTCCAA+AGG 0.624971 3_4:+2256455 Msa0484740:intron
CTCAACTATTTGTAGGTGTG+GGG 0.631205 3_4:+2255001 Msa0484740:intron
TAGCAAGAGATATCAAGCAA+AGG 0.641515 3_4:+2256644 Msa0484740:CDS
GGACTGGTATACTTTGCACG+TGG 0.648609 3_4:-2257240 None:intergenic
GGTGATAAAACTGGTTGTGA+AGG 0.649377 3_4:-2255058 None:intergenic
GTGCAGGAGTATGAAAGTGT+TGG 0.654728 3_4:+2253740 Msa0484740:five_prime_UTR
TGGTTAATCTTGATACTCTG+GGG 0.656186 3_4:-2256920 None:intergenic
GTTGGCGACATGGAATGGAA+TGG 0.657982 3_4:-2253892 None:intergenic
CGATAAGAAGAAGCTTGATG+AGG 0.673490 3_4:-2254030 None:intergenic
CAAGACCAGGCAGCCAATGG+TGG 0.679968 3_4:+2256944 Msa0484740:CDS
GTAAACCAGCAAGATACCCA+TGG 0.687226 3_4:-2255821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATTGTTAACAAATTT+TGG - chr3_4:2254238-2254257 None:intergenic 10.0%
!! CATTAAATTGATGTAAAATT+GGG - chr3_4:2254169-2254188 None:intergenic 15.0%
!! ACATTAAATTGATGTAAAAT+TGG - chr3_4:2254170-2254189 None:intergenic 15.0%
!!! TTAATAAAATTTGTTGAGTA+TGG + chr3_4:2254264-2254283 Msa0484740:intron 15.0%
!! AAAAAATATAGATATATGTC+TGG - chr3_4:2255496-2255515 None:intergenic 15.0%
!! AATCTTATTATAAAAATGCA+TGG + chr3_4:2255526-2255545 Msa0484740:intron 15.0%
!! ATTAGAAAGACAAAAACAAA+AGG + chr3_4:2254436-2254455 Msa0484740:intron 20.0%
!! CATAAGAATAAGAAAAATAG+CGG - chr3_4:2254717-2254736 None:intergenic 20.0%
!! TTCTTATGGAATGAAAATTT+AGG + chr3_4:2254729-2254748 Msa0484740:intron 20.0%
!! TCTTATGGAATGAAAATTTA+GGG + chr3_4:2254730-2254749 Msa0484740:intron 20.0%
!!! GAAAAGTACGTAAAAATAAA+AGG - chr3_4:2254978-2254997 None:intergenic 20.0%
!! AAGAAAAAGAAATAATAGAG+AGG - chr3_4:2256775-2256794 None:intergenic 20.0%
!!! AATGATGATATTTTCTTCTA+TGG + chr3_4:2256889-2256908 Msa0484740:intron 20.0%
!!! TAAGTTTTTTCTCATGTAAT+TGG + chr3_4:2257120-2257139 Msa0484740:three_prime_UTR 20.0%
!! ATATCTTGACAAATAGATTA+TGG + chr3_4:2257210-2257229 Msa0484740:three_prime_UTR 20.0%
! AATATATCATCTCTATTACC+CGG - chr3_4:2254361-2254380 None:intergenic 25.0%
! TTAGTGATAACAAAGAAAAG+AGG + chr3_4:2254387-2254406 Msa0484740:intron 25.0%
! TGTGATATTGAGAAATTTGA+AGG - chr3_4:2254647-2254666 None:intergenic 25.0%
! TCAAATTTCTCAATATCACA+AGG + chr3_4:2254647-2254666 Msa0484740:intron 25.0%
!!! CATAGTAGAATTTTGACTAA+CGG - chr3_4:2254683-2254702 None:intergenic 25.0%
!!! CGCTATTTTTCTTATTCTTA+TGG + chr3_4:2254715-2254734 Msa0484740:intron 25.0%
!! ACCTACCAATTTCATAATTT+TGG + chr3_4:2254818-2254837 Msa0484740:intron 25.0%
! TCCAAAATTATGAAATTGGT+AGG - chr3_4:2254822-2254841 None:intergenic 25.0%
! CTAGTCCAAAATTATGAAAT+TGG - chr3_4:2254826-2254845 None:intergenic 25.0%
! ATTAACTCAAACAAGATACA+AGG - chr3_4:2254929-2254948 None:intergenic 25.0%
! TATTACAAATACTAACCCAA+TGG - chr3_4:2255085-2255104 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr3_4:2255164-2255183 Msa0484740:intron 25.0%
!! TGATATTTGTACATCCATTT+TGG - chr3_4:2255261-2255280 None:intergenic 25.0%
! ATTTAGAAATACAGCAAACT+TGG + chr3_4:2255353-2255372 Msa0484740:intron 25.0%
! TTTAGAAATACAGCAAACTT+GGG + chr3_4:2255354-2255373 Msa0484740:intron 25.0%
! ATATATCAGACAAACTCTAT+AGG - chr3_4:2255380-2255399 None:intergenic 25.0%
! TGTATAAGATGAAGGAAATT+CGG - chr3_4:2255454-2255473 None:intergenic 25.0%
! TACTTATGTGTATAAGATGA+AGG - chr3_4:2255462-2255481 None:intergenic 25.0%
!! TCAATTGATAGTTGTTCATT+TGG + chr3_4:2255689-2255708 Msa0484740:intron 25.0%
! TTTAAGCAGAAATAAGATCA+GGG - chr3_4:2255887-2255906 None:intergenic 25.0%
! AATGTAAACAAGATACTTGT+GGG + chr3_4:2256203-2256222 Msa0484740:CDS 25.0%
! ATGTCAAGTAAAAGTAGAAA+GGG - chr3_4:2256277-2256296 None:intergenic 25.0%
! TTTCCTTCAATACAAACATA+AGG + chr3_4:2256418-2256437 Msa0484740:intron 25.0%
! TTAGCAGAATAAGTAATTGT+TGG - chr3_4:2256815-2256834 None:intergenic 25.0%
! TATTCTGATGACAATATTAG+TGG + chr3_4:2257031-2257050 Msa0484740:three_prime_UTR 25.0%
! ATTCTGATGACAATATTAGT+GGG + chr3_4:2257032-2257051 Msa0484740:three_prime_UTR 25.0%
ACGAATAGCTTCTAACTATT+CGG + chr3_4:2253916-2253935 Msa0484740:five_prime_UTR 30.0%
AAGTGAATAACATGAAGATC+TGG - chr3_4:2254095-2254114 None:intergenic 30.0%
!! TTGGTCTTAAATTTGATGTG+TGG - chr3_4:2254219-2254238 None:intergenic 30.0%
ATATATCATCTCTATTACCC+GGG - chr3_4:2254360-2254379 None:intergenic 30.0%
CGATTCAGAGTATAAAAAGT+TGG + chr3_4:2254540-2254559 Msa0484740:intron 30.0%
GTCAAAATTCTACTATGCTA+TGG + chr3_4:2254686-2254705 Msa0484740:intron 30.0%
TTTCTGACTCAACTATTTGT+AGG + chr3_4:2254994-2255013 Msa0484740:intron 30.0%
!! AACTACTTTTGTACTACTTC+TGG + chr3_4:2255123-2255142 Msa0484740:intron 30.0%
!! ACTACTTTTGTACTACTTCT+GGG + chr3_4:2255124-2255143 Msa0484740:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3_4:2255177-2255196 Msa0484740:intron 30.0%
GTACAAAAGTTGTACCAAAA+TGG + chr3_4:2255244-2255263 Msa0484740:intron 30.0%
ATAAGAACCATTGAACTTGA+TGG + chr3_4:2255565-2255584 Msa0484740:CDS 30.0%
! AACGCATTAAGTTGCAAATT+TGG + chr3_4:2255590-2255609 Msa0484740:CDS 30.0%
! ACGCATTAAGTTGCAAATTT+GGG + chr3_4:2255591-2255610 Msa0484740:CDS 30.0%
ACATACCTGTAGTAATAGTT+CGG - chr3_4:2255639-2255658 None:intergenic 30.0%
CTTTAAGCAGAAATAAGATC+AGG - chr3_4:2255888-2255907 None:intergenic 30.0%
CACTAATGTCTGAAAATTGT+AGG + chr3_4:2255935-2255954 Msa0484740:intron 30.0%
AAACAGATCAATTGATTGTC+TGG - chr3_4:2256056-2256075 None:intergenic 30.0%
CTTCTTTCTGTTCAGATATT+AGG + chr3_4:2256144-2256163 Msa0484740:intron 30.0%
TCTGTTCAGATATTAGGAAT+TGG + chr3_4:2256150-2256169 Msa0484740:intron 30.0%
CAATGTAAACAAGATACTTG+TGG + chr3_4:2256202-2256221 Msa0484740:CDS 30.0%
CTGATATGGATGAAAGTAAA+CGG + chr3_4:2256234-2256253 Msa0484740:CDS 30.0%
TGATATGGATGAAAGTAAAC+GGG + chr3_4:2256235-2256254 Msa0484740:CDS 30.0%
GATGTCAAGTAAAAGTAGAA+AGG - chr3_4:2256278-2256297 None:intergenic 30.0%
ACACCTTATGTTTGTATTGA+AGG - chr3_4:2256424-2256443 None:intergenic 30.0%
TGCAAAAACAAACATGAATG+TGG + chr3_4:2256603-2256622 Msa0484740:CDS 30.0%
AAAAACAAACATGAATGTGG+AGG + chr3_4:2256606-2256625 Msa0484740:CDS 30.0%
AGGACTACAAAAATGAAGAT+AGG - chr3_4:2256715-2256734 None:intergenic 30.0%
! TTTGTTGCTTCTTTCTTGTT+TGG + chr3_4:2256856-2256875 Msa0484740:intron 30.0%
! GATGATATTTTCTTCTATGG+TGG + chr3_4:2256892-2256911 Msa0484740:intron 30.0%
TTGGTTAATCTTGATACTCT+GGG - chr3_4:2256924-2256943 None:intergenic 30.0%
TAAAACAAGACATGTGAAGT+TGG - chr3_4:2257087-2257106 None:intergenic 30.0%
!!! GTTTTTTCTCATGTAATTGG+TGG + chr3_4:2257123-2257142 Msa0484740:three_prime_UTR 30.0%
! ACTACCTGTGTCTCTTTTAT+TGG - chr3_4:2253689-2253708 None:intergenic 35.0%
ACACAGGTAGTATATTGAAG+AGG + chr3_4:2253698-2253717 Msa0484740:five_prime_UTR 35.0%
CACAGGTAGTATATTGAAGA+GGG + chr3_4:2253699-2253718 Msa0484740:five_prime_UTR 35.0%
AGTTAGAAGCTATTCGTTGT+TGG - chr3_4:2253913-2253932 None:intergenic 35.0%
CTTGATGAGGTAATCGTAAT+CGG - chr3_4:2254020-2254039 None:intergenic 35.0%
CTCATCAAGCTTCTTCTTAT+CGG + chr3_4:2254031-2254050 Msa0484740:CDS 35.0%
! ATTTGTTGAGTATGGCTTTG+TGG + chr3_4:2254272-2254291 Msa0484740:intron 35.0%
AAGAAAAGAGGAGATGTTGT+TGG + chr3_4:2254399-2254418 Msa0484740:intron 35.0%
GGAAAAAGATGTTTACTCCT+TGG + chr3_4:2254457-2254476 Msa0484740:intron 35.0%
AGATGTTTACTCCTTGGAAA+TGG + chr3_4:2254463-2254482 Msa0484740:intron 35.0%
CATGGTTCAAGTAGTTGTAA+CGG - chr3_4:2254591-2254610 None:intergenic 35.0%
GTTACAACTACTTGAACCAT+GGG + chr3_4:2254590-2254609 Msa0484740:intron 35.0%
GAAATTTGAAGGAAAAGCCA+CGG - chr3_4:2254636-2254655 None:intergenic 35.0%
CTATTTGTGCCAATCACAAT+TGG + chr3_4:2254882-2254901 Msa0484740:intron 35.0%
ACTCAACTATTTGTAGGTGT+GGG + chr3_4:2255000-2255019 Msa0484740:intron 35.0%
!!! TTGCTTTTGAGGTTTTCTGA+TGG + chr3_4:2255033-2255052 Msa0484740:CDS 35.0%
TACAAATACTAACCCAATGG+TGG - chr3_4:2255082-2255101 None:intergenic 35.0%
CCAATAAGAAGAGAACAACA+AGG - chr3_4:2255154-2255173 None:intergenic 35.0%
!! CCTTGTTGTTCTCTTCTTAT+TGG + chr3_4:2255151-2255170 Msa0484740:intron 35.0%
TGTAAACACTTTCTCATCGT+TGG + chr3_4:2255426-2255445 Msa0484740:intron 35.0%
AGATTCCGAACTATTACTAC+AGG + chr3_4:2255631-2255650 Msa0484740:CDS 35.0%
ACTGGGAACTCGTAATTAAT+AGG + chr3_4:2255720-2255739 Msa0484740:intron 35.0%
TTAAGACATGTTCCTTCAAC+AGG - chr3_4:2255766-2255785 None:intergenic 35.0%
AAATAAGATCAGGGAAAGGA+GGG - chr3_4:2255878-2255897 None:intergenic 35.0%
AAAAGGAACAAGAATGGATG+GGG - chr3_4:2255999-2256018 None:intergenic 35.0%
CAAAAGGAACAAGAATGGAT+GGG - chr3_4:2256000-2256019 None:intergenic 35.0%
TCAAAAGGAACAAGAATGGA+TGG - chr3_4:2256001-2256020 None:intergenic 35.0%
AAGGCAAGCAGAATAAACAA+TGG - chr3_4:2256111-2256130 None:intergenic 35.0%
TACTTGACATCTTAGCTGTT+TGG + chr3_4:2256287-2256306 Msa0484740:intron 35.0%
ACTTGACATCTTAGCTGTTT+GGG + chr3_4:2256288-2256307 Msa0484740:intron 35.0%
TCCGTAAGTAAATGTGGTAT+GGG - chr3_4:2256360-2256379 None:intergenic 35.0%
ATCCGTAAGTAAATGTGGTA+TGG - chr3_4:2256361-2256380 None:intergenic 35.0%
!! TAAGGTGTTCGTTTTTCTCT+AGG + chr3_4:2256436-2256455 Msa0484740:intron 35.0%
TAGCAAGAGATATCAAGCAA+AGG + chr3_4:2256644-2256663 Msa0484740:CDS 35.0%
AAGATAGGAAAGAGTCAACA+AGG - chr3_4:2256700-2256719 None:intergenic 35.0%
! ATTTTTGTAGTCCTCAGAAG+TGG + chr3_4:2256721-2256740 Msa0484740:intron 35.0%
GAAATAATAGAGAGGAGAGA+AGG - chr3_4:2256767-2256786 None:intergenic 35.0%
TGGTTAATCTTGATACTCTG+GGG - chr3_4:2256923-2256942 None:intergenic 35.0%
GTTGGTTAATCTTGATACTC+TGG - chr3_4:2256925-2256944 None:intergenic 35.0%
TAACGGAAAGAACCAGTATT+TGG + chr3_4:2256998-2257017 Msa0484740:exon 35.0%
AACGGAAAGAACCAGTATTT+GGG + chr3_4:2256999-2257018 Msa0484740:exon 35.0%
TAACATTAGCACCCAAATAC+TGG - chr3_4:2257013-2257032 None:intergenic 35.0%
TGTGAAGTTGGAAGATAAAG+AGG - chr3_4:2257075-2257094 None:intergenic 35.0%
TGGTCCAATAAAAGAGACAC+AGG + chr3_4:2253682-2253701 Msa0484740:five_prime_UTR 40.0%
AGGTAGTATATTGAAGAGGG+TGG + chr3_4:2253702-2253721 Msa0484740:five_prime_UTR 40.0%
GGTAGTATATTGAAGAGGGT+GGG + chr3_4:2253703-2253722 Msa0484740:five_prime_UTR 40.0%
GTAGTATATTGAAGAGGGTG+GGG + chr3_4:2253704-2253723 Msa0484740:five_prime_UTR 40.0%
!!! GAGTGTTGAATTTTGAGCGA+TGG + chr3_4:2253970-2253989 Msa0484740:exon 40.0%
CGATAAGAAGAAGCTTGATG+AGG - chr3_4:2254033-2254052 None:intergenic 40.0%
GAAAGTAGATGACCATAACC+CGG + chr3_4:2254339-2254358 Msa0484740:intron 40.0%
AAAGTAGATGACCATAACCC+GGG + chr3_4:2254340-2254359 Msa0484740:intron 40.0%
GAGATGTTGTTGGAAAAGAG+AGG + chr3_4:2254409-2254428 Msa0484740:intron 40.0%
CCAGTAATCTTCCATTTCCA+AGG - chr3_4:2254477-2254496 None:intergenic 40.0%
CCTTGGAAATGGAAGATTAC+TGG + chr3_4:2254474-2254493 Msa0484740:intron 40.0%
GGAAGATTACTGGAGAATAG+AGG + chr3_4:2254484-2254503 Msa0484740:intron 40.0%
AAGTTGGAGTCTTTCATACG+AGG + chr3_4:2254556-2254575 Msa0484740:intron 40.0%
AGTAGTTGTAACGGTAACAG+TGG - chr3_4:2254582-2254601 None:intergenic 40.0%
CGTTACAACTACTTGAACCA+TGG + chr3_4:2254589-2254608 Msa0484740:intron 40.0%
TTGTAAATCCTCAACGAGGT+TGG - chr3_4:2254783-2254802 None:intergenic 40.0%
ACCTCGTTGAGGATTTACAA+TGG + chr3_4:2254783-2254802 Msa0484740:intron 40.0%
TCCATTGTAAATCCTCAACG+AGG - chr3_4:2254787-2254806 None:intergenic 40.0%
ACTAGATCTCATATCACAGC+TGG + chr3_4:2254841-2254860 Msa0484740:intron 40.0%
GACTCAACTATTTGTAGGTG+TGG + chr3_4:2254999-2255018 Msa0484740:intron 40.0%
CTCAACTATTTGTAGGTGTG+GGG + chr3_4:2255001-2255020 Msa0484740:intron 40.0%
!! GGAAGAGTTGTTTGCTTTTG+AGG + chr3_4:2255022-2255041 Msa0484740:CDS 40.0%
GGTGATAAAACTGGTTGTGA+AGG - chr3_4:2255061-2255080 None:intergenic 40.0%
!! ACCAGTTTTATCACCACCAT+TGG + chr3_4:2255066-2255085 Msa0484740:CDS 40.0%
!! CCAGTTTTATCACCACCATT+GGG + chr3_4:2255067-2255086 Msa0484740:CDS 40.0%
TTCATTTGGTCCCATACACT+GGG + chr3_4:2255703-2255722 Msa0484740:intron 40.0%
ATTACGAGTTCCCAGTGTAT+GGG - chr3_4:2255716-2255735 None:intergenic 40.0%
AATTACGAGTTCCCAGTGTA+TGG - chr3_4:2255717-2255736 None:intergenic 40.0%
TTTACCCACATTCCTGTTGA+AGG + chr3_4:2255751-2255770 Msa0484740:intron 40.0%
TGTTCCTTCAACAGGAATGT+GGG - chr3_4:2255758-2255777 None:intergenic 40.0%
ATGTTCCTTCAACAGGAATG+TGG - chr3_4:2255759-2255778 None:intergenic 40.0%
TCTGTTGCAGCTTATTATCG+TGG + chr3_4:2255796-2255815 Msa0484740:intron 40.0%
GAAATAAGATCAGGGAAAGG+AGG - chr3_4:2255879-2255898 None:intergenic 40.0%
GCAGAAATAAGATCAGGGAA+AGG - chr3_4:2255882-2255901 None:intergenic 40.0%
GAATGGATGGGGAAATAAGA+AGG - chr3_4:2255988-2256007 None:intergenic 40.0%
GAGGTCAAAAGGAACAAGAA+TGG - chr3_4:2256005-2256024 None:intergenic 40.0%
!! GGAGAGTATTAGAGGTCAAA+AGG - chr3_4:2256016-2256035 None:intergenic 40.0%
! CTGGCTAGTTAAATGTGAGT+CGG - chr3_4:2256037-2256056 None:intergenic 40.0%
! AAGAAGCGTGCTACATCAAA+AGG - chr3_4:2256130-2256149 None:intergenic 40.0%
CAAGATACTTGTGGGAAACA+AGG + chr3_4:2256211-2256230 Msa0484740:CDS 40.0%
CTTGACATCTTAGCTGTTTG+GGG + chr3_4:2256289-2256308 Msa0484740:intron 40.0%
GCCCATACCACATTTACTTA+CGG + chr3_4:2256356-2256375 Msa0484740:intron 40.0%
CTCAGATCCGTAAGTAAATG+TGG - chr3_4:2256366-2256385 None:intergenic 40.0%
!! AGACACTGTTTCTAGTACTG+AGG + chr3_4:2256672-2256691 Msa0484740:CDS 40.0%
TGCATAAACTTCCACTTCTG+AGG - chr3_4:2256735-2256754 None:intergenic 40.0%
CAAGATTAACCAACAAGACC+AGG + chr3_4:2256931-2256950 Msa0484740:CDS 40.0%
! GTGCAGGAGTATGAAAGTGT+TGG + chr3_4:2253740-2253759 Msa0484740:five_prime_UTR 45.0%
CATCTCTATTACCCGGGTTA+TGG - chr3_4:2254354-2254373 None:intergenic 45.0%
! AAATCCTCAACGAGGTTGGT+GGG - chr3_4:2254779-2254798 None:intergenic 45.0%
TAAATCCTCAACGAGGTTGG+TGG - chr3_4:2254780-2254799 None:intergenic 45.0%
AGCGGTGAACCAATTGTGAT+TGG - chr3_4:2254894-2254913 None:intergenic 45.0%
ACAAGGCCATCAAATTGCAG+CGG - chr3_4:2254912-2254931 None:intergenic 45.0%
! CCCAATGGTGGTGATAAAAC+TGG - chr3_4:2255070-2255089 None:intergenic 45.0%
GCGTTTGCCATCAAGTTCAA+TGG - chr3_4:2255575-2255594 None:intergenic 45.0%
! TTGCAAATTTGGGACACAGC+TGG + chr3_4:2255601-2255620 Msa0484740:CDS 45.0%
GTTCATTTGGTCCCATACAC+TGG + chr3_4:2255702-2255721 Msa0484740:intron 45.0%
AGCTTATTATCGTGGAGCCA+TGG + chr3_4:2255804-2255823 Msa0484740:intron 45.0%
GCTTATTATCGTGGAGCCAT+GGG + chr3_4:2255805-2255824 Msa0484740:intron 45.0%
GTAAACCAGCAAGATACCCA+TGG - chr3_4:2255824-2255843 None:intergenic 45.0%
!! TGTGAGTCGGAGAGTATTAG+AGG - chr3_4:2256024-2256043 None:intergenic 45.0%
TGTGGGAAACAAGGCTGATA+TGG + chr3_4:2256220-2256239 Msa0484740:CDS 45.0%
! TCTTAGCTGTTTGGGGTATG+AGG + chr3_4:2256296-2256315 Msa0484740:intron 45.0%
ATCAGCAAGAGCTTGACCTT+TGG - chr3_4:2256474-2256493 None:intergenic 45.0%
CAAGCTCTTGCTGATGAGTA+TGG + chr3_4:2256479-2256498 Msa0484740:CDS 45.0%
TGGTCAGGCTGCACAAAAAT+CGG + chr3_4:2256964-2256983 Msa0484740:CDS 45.0%
ACTCCTGCACACACCAGATT+CGG - chr3_4:2253730-2253749 None:intergenic 50.0%
GTTGGCGACATGGAATGGAA+TGG - chr3_4:2253895-2253914 None:intergenic 50.0%
TCGTTGTTGGCGACATGGAA+TGG - chr3_4:2253900-2253919 None:intergenic 50.0%
GCTATTCGTTGTTGGCGACA+TGG - chr3_4:2253905-2253924 None:intergenic 50.0%
CACAGCACAGAGATCGGAAT+CGG - chr3_4:2253945-2253964 None:intergenic 50.0%
CCAAAGCACAGCACAGAGAT+CGG - chr3_4:2253951-2253970 None:intergenic 50.0%
CTTCTTCTTATCGGCGACAG+TGG + chr3_4:2254040-2254059 Msa0484740:CDS 50.0%
!!! AACGAGGTTGGTGGGTCTTT+TGG - chr3_4:2254771-2254790 None:intergenic 50.0%
GGTTCACCGCTGCAATTTGA+TGG + chr3_4:2254903-2254922 Msa0484740:intron 50.0%
! AATTTGGGACACAGCTGGTC+AGG + chr3_4:2255606-2255625 Msa0484740:CDS 50.0%
AAACGGGTATGTCCATCTCG+AGG + chr3_4:2256251-2256270 Msa0484740:intron 50.0%
AAGTAGAAAGGGCCTCGAGA+TGG - chr3_4:2256266-2256285 None:intergenic 50.0%
TAGGCTGTACCTACCTCCAA+AGG + chr3_4:2256455-2256474 Msa0484740:intron 50.0%
! AGAGCTTGACCTTTGGAGGT+AGG - chr3_4:2256467-2256486 None:intergenic 50.0%
AGCAAGAGCTTGACCTTTGG+AGG - chr3_4:2256471-2256490 None:intergenic 50.0%
!! GCACAAAAATCGGCTTGCTG+CGG + chr3_4:2256974-2256993 Msa0484740:CDS 50.0%
!! AATCGGCTTGCTGCGGTTAA+CGG + chr3_4:2256981-2257000 Msa0484740:CDS 50.0%
! GGACTGGTATACTTTGCACG+TGG - chr3_4:2257243-2257262 None:intergenic 50.0%
CGCAGAGAGAGAGAGAGAGA+GGG + chr3_4:2253791-2253810 Msa0484740:five_prime_UTR 55.0%
GCAGAGAGAGAGAGAGAGAG+GGG + chr3_4:2253792-2253811 Msa0484740:five_prime_UTR 55.0%
CCGATCTCTGTGCTGTGCTT+TGG + chr3_4:2253948-2253967 Msa0484740:five_prime_UTR 55.0%
TAATCGGCACGAGCTCTTGC+AGG - chr3_4:2254004-2254023 None:intergenic 55.0%
! AACCATGGGTGCCACGAGAA+TGG + chr3_4:2254604-2254623 Msa0484740:intron 55.0%
!!! GGTTGGTGGGTCTTTTGGCA+TGG - chr3_4:2254766-2254785 None:intergenic 55.0%
AAGACCCACCAACCTCGTTG+AGG + chr3_4:2254772-2254791 Msa0484740:intron 55.0%
TGGAGCCATGGGTATCTTGC+TGG + chr3_4:2255816-2255835 Msa0484740:CDS 55.0%
!! CATTGGCTGCCTGGTCTTGT+TGG - chr3_4:2256943-2256962 None:intergenic 55.0%
CAACAAGACCAGGCAGCCAA+TGG + chr3_4:2256941-2256960 Msa0484740:CDS 55.0%
TTGTGCAGCCTGACCACCAT+TGG - chr3_4:2256960-2256979 None:intergenic 55.0%
GCGCAGAGAGAGAGAGAGAG+AGG + chr3_4:2253790-2253809 Msa0484740:five_prime_UTR 60.0%
TGCCATTCTCGTGGCACCCA+TGG - chr3_4:2254609-2254628 None:intergenic 60.0%
CACGGCAACTGCCATTCTCG+TGG - chr3_4:2254618-2254637 None:intergenic 60.0%
CACGAGAATGGCAGTTGCCG+TGG + chr3_4:2254616-2254635 Msa0484740:intron 60.0%
CAAGACCAGGCAGCCAATGG+TGG + chr3_4:2256944-2256963 Msa0484740:CDS 60.0%
GAAGAGGGTGGGGCCGAATC+TGG + chr3_4:2253714-2253733 Msa0484740:five_prime_UTR 65.0%
GGGCCGAATCTGGTGTGTGC+AGG + chr3_4:2253724-2253743 Msa0484740:five_prime_UTR 65.0%
! CCTGACCACCATTGGCTGCC+TGG - chr3_4:2256952-2256971 None:intergenic 65.0%
CCAGGCAGCCAATGGTGGTC+AGG + chr3_4:2256949-2256968 Msa0484740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 2253665 2257264 2253665 ID=Msa0484740;Name=Msa0484740
chr3_4 mRNA 2253665 2257264 2253665 ID=Msa0484740-mRNA-1;Parent=Msa0484740;Name=Msa0484740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=324|1|1|1|1|1|8|264|215
chr3_4 exon 2253665 2254061 2253665 ID=Msa0484740-mRNA-1:exon:740;Parent=Msa0484740-mRNA-1
chr3_4 exon 2255016 2255088 2255016 ID=Msa0484740-mRNA-1:exon:741;Parent=Msa0484740-mRNA-1
chr3_4 exon 2255552 2255652 2255552 ID=Msa0484740-mRNA-1:exon:742;Parent=Msa0484740-mRNA-1
chr3_4 exon 2255806 2255871 2255806 ID=Msa0484740-mRNA-1:exon:743;Parent=Msa0484740-mRNA-1
chr3_4 exon 2256159 2256256 2256159 ID=Msa0484740-mRNA-1:exon:744;Parent=Msa0484740-mRNA-1
chr3_4 exon 2256458 2256520 2256458 ID=Msa0484740-mRNA-1:exon:745;Parent=Msa0484740-mRNA-1
chr3_4 exon 2256601 2256693 2256601 ID=Msa0484740-mRNA-1:exon:746;Parent=Msa0484740-mRNA-1
chr3_4 exon 2256920 2257264 2256920 ID=Msa0484740-mRNA-1:exon:747;Parent=Msa0484740-mRNA-1
chr3_4 five_prime_UTR 2253665 2253988 2253665 ID=Msa0484740-mRNA-1:five_prime_utr;Parent=Msa0484740-mRNA-1
chr3_4 CDS 2253989 2254061 2253989 ID=Msa0484740-mRNA-1:cds;Parent=Msa0484740-mRNA-1
chr3_4 CDS 2255016 2255088 2255016 ID=Msa0484740-mRNA-1:cds;Parent=Msa0484740-mRNA-1
chr3_4 CDS 2255552 2255652 2255552 ID=Msa0484740-mRNA-1:cds;Parent=Msa0484740-mRNA-1
chr3_4 CDS 2255806 2255871 2255806 ID=Msa0484740-mRNA-1:cds;Parent=Msa0484740-mRNA-1
chr3_4 CDS 2256159 2256256 2256159 ID=Msa0484740-mRNA-1:cds;Parent=Msa0484740-mRNA-1
chr3_4 CDS 2256458 2256520 2256458 ID=Msa0484740-mRNA-1:cds;Parent=Msa0484740-mRNA-1
chr3_4 CDS 2256601 2256693 2256601 ID=Msa0484740-mRNA-1:cds;Parent=Msa0484740-mRNA-1
chr3_4 CDS 2256920 2257000 2256920 ID=Msa0484740-mRNA-1:cds;Parent=Msa0484740-mRNA-1
chr3_4 three_prime_UTR 2257001 2257264 2257001 ID=Msa0484740-mRNA-1:three_prime_utr;Parent=Msa0484740-mRNA-1
Gene Sequence

>Msa0484740

ATGGCAGCAGCACCTGCAAGAGCTCGTGCCGATTACGATTACCTCATCAAGCTTCTTCTTATCGGCGACAGTGGTGTGGGGAAGAGTTGTTTGCTTTTGAGGTTTTCTGATGGCTCCTTCACAACCAGTTTTATCACCACCATTGGCATTGATTTCAAGATAAGAACCATTGAACTTGATGGCAAACGCATTAAGTTGCAAATTTGGGACACAGCTGGTCAGGAGAGATTCCGAACTATTACTACAGCTTATTATCGTGGAGCCATGGGTATCTTGCTGGTTTACGATGTTACTGATGAAGCTTCTTTCAATAATATTAGGAATTGGATTCGCAATATTGAACAACATGCTTCTGACAATGTAAACAAGATACTTGTGGGAAACAAGGCTGATATGGATGAAAGTAAACGGGCTGTACCTACCTCCAAAGGTCAAGCTCTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACAAACATGAATGTGGAGGAAATTTTCTTTTCAATAGCAAGAGATATCAAGCAAAGGCTTGCAGACACTGTTTCTAGTACTGAGCCCCAGAGTATCAAGATTAACCAACAAGACCAGGCAGCCAATGGTGGTCAGGCTGCACAAAAATCGGCTTGCTGCGGTTAA

Protein sequence

>Msa0484740

MAAAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEIFFSIARDIKQRLADTVSSTEPQSIKINQQDQAANGGQAAQKSACCG*