AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445940 MtrunA17_Chr8g0378201 97.291 443 11 1 1 443 1 442 0.0 877
Msa1445940 MtrunA17_Chr5g0435111 54.918 122 46 1 5 126 2 114 2.79e-41 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 162 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTCCATTTCTTCCTTCT+TGG 0.160653 tig0031250:-27009 None:intergenic
GATAATGAGGTGATAGGTTT+AGG 0.216881 tig0031250:+27564 Msa1445940:CDS
AATAATGAGTTGTTAGGATT+TGG 0.218370 tig0031250:+27411 Msa1445940:CDS
CAAAATTTGCATCATGTAAA+TGG 0.242690 tig0031250:+28242 Msa1445940:CDS
ATAATGAGTTGTTAGGATTT+GGG 0.254136 tig0031250:+27412 Msa1445940:CDS
TTTGGGCATATGGGTCATTC+AGG 0.261206 tig0031250:+27501 Msa1445940:CDS
GAAGATCAATTCATTGTTGA+TGG 0.290026 tig0031250:+28305 Msa1445940:CDS
TTTCACCATACTTGTCGATT+AGG 0.298708 tig0031250:-27047 None:intergenic
TATGGCTGAGTTTGGGCATA+TGG 0.306433 tig0031250:+27491 Msa1445940:CDS
TTCACCATACTTGTCGATTA+GGG 0.311119 tig0031250:-27046 None:intergenic
ATAATGAGGTGATAGGTTTA+GGG 0.324740 tig0031250:+27565 Msa1445940:CDS
GGAAAAGGAGAGGGAGGAAA+GGG 0.326049 tig0031250:+27881 Msa1445940:CDS
GCATCATTTGTGAAAGATAA+TGG 0.330244 tig0031250:-28220 None:intergenic
TTCCTTCTTGGAGGAATCAT+TGG 0.332591 tig0031250:-26997 None:intergenic
AGGTTTAGGGTTTGAGTATG+AGG 0.332722 tig0031250:+27578 Msa1445940:CDS
AGGATTTGGGGACGGCGATC+GGG 0.335634 tig0031250:+27425 Msa1445940:CDS
GGAATGGATATGGCTGAGTT+TGG 0.339401 tig0031250:+27483 Msa1445940:CDS
AAATCAGCACCGAGCAGAAA+TGG 0.353850 tig0031250:+28079 Msa1445940:CDS
GGAGATCGAGATGGGTTTCT+TGG 0.355872 tig0031250:+27447 Msa1445940:CDS
GGGTTTCTTGGTAGTGGTGG+TGG 0.361161 tig0031250:+27459 Msa1445940:CDS
GGGAAAAGGAGAGGGAGGAA+AGG 0.364519 tig0031250:+27880 Msa1445940:CDS
GATTGCTTGTTATGTGAATT+CGG 0.367637 tig0031250:+27125 Msa1445940:CDS
GGTGGAAATAATGAGTTGTT+AGG 0.371046 tig0031250:+27405 Msa1445940:CDS
GGGAAAAGGTTAGGAGGCAG+AGG 0.380089 tig0031250:+27913 Msa1445940:CDS
ATCCGATAGGCCAGCAGGTT+GGG 0.386802 tig0031250:-28180 None:intergenic
GGTGATGTTGCACTTGTTGT+TGG 0.387225 tig0031250:+27363 Msa1445940:CDS
GTCCATTTCTTCCTTCTTGG+AGG 0.388092 tig0031250:-27006 None:intergenic
GGAGTTGATAATGAGGTGAT+AGG 0.395706 tig0031250:+27558 Msa1445940:CDS
CTCATACACATAACCATTCT+CGG 0.397651 tig0031250:-27652 None:intergenic
AAAGGGAGCGCGAGAGGCAG+AGG 0.405523 tig0031250:+27814 Msa1445940:CDS
TGGTGGTGGAGGAATGGATA+TGG 0.405888 tig0031250:+27473 Msa1445940:CDS
ATGGGAGTAGTGAGTTTGAT+TGG 0.409811 tig0031250:+27289 Msa1445940:CDS
TTCCTCCAAGAAGGAAGAAA+TGG 0.413290 tig0031250:+27004 Msa1445940:CDS
GGATGGAGGGGTTAACTCAT+TGG 0.420218 tig0031250:+27310 Msa1445940:CDS
GGGAAGAGAGAATGAATTGC+AGG 0.432882 tig0031250:+28021 Msa1445940:CDS
AAAACCCTAATCGACAAGTA+TGG 0.433688 tig0031250:+27042 Msa1445940:CDS
TGGTTATGTGTATGAGGAAG+GGG 0.434586 tig0031250:+27659 Msa1445940:CDS
GAGAATGAATTGCAGGAGGC+TGG 0.436328 tig0031250:+28028 Msa1445940:CDS
GGGAGCGCGAGAGGCAGAGG+AGG 0.437021 tig0031250:+27817 Msa1445940:CDS
GGAGGAAAGGGAGAAGGAGA+GGG 0.439243 tig0031250:+27893 Msa1445940:CDS
GGGAGGAAAGGGAGAAGGAG+AGG 0.439405 tig0031250:+27892 Msa1445940:CDS
TAGGATTTGGGGACGGCGAT+CGG 0.440786 tig0031250:+27424 Msa1445940:CDS
AATCGACAAGTATGGTGAAA+TGG 0.441441 tig0031250:+27050 Msa1445940:CDS
AAGGGAGAAGGAGAGGGAAA+AGG 0.441479 tig0031250:+27899 Msa1445940:CDS
TATGGGTCATTCAGGGGATG+GGG 0.445632 tig0031250:+27509 Msa1445940:CDS
TTTCTTGGTAGTGGTGGTGG+AGG 0.446839 tig0031250:+27462 Msa1445940:CDS
CAGTGGACTGCCCAACCTGC+TGG 0.450699 tig0031250:+28170 Msa1445940:CDS
GCACTTGTTGTTGGTGGTGG+TGG 0.452572 tig0031250:+27372 Msa1445940:CDS
GCGATCCGGTGGTTTATCCT+TGG 0.454110 tig0031250:+27160 Msa1445940:CDS
GAATGGATATGGCTGAGTTT+GGG 0.456485 tig0031250:+27484 Msa1445940:CDS
AGAAGGAGAGGGAAAAGGTT+AGG 0.456908 tig0031250:+27904 Msa1445940:CDS
GTTGGGGCAGTTGAGAGAAA+TGG 0.458119 tig0031250:+27764 Msa1445940:CDS
TGCCCAACCTGCTGGCCTAT+CGG 0.458375 tig0031250:+28178 Msa1445940:CDS
CGAGATGGGTTTCTTGGTAG+TGG 0.459697 tig0031250:+27453 Msa1445940:CDS
GGAGAGGGAGGAAAGGGAGA+AGG 0.461630 tig0031250:+27887 Msa1445940:CDS
GCGAGAATATACCGAGCAAT+TGG 0.465079 tig0031250:-28148 None:intergenic
TTTCTCTCAACTGCCCCAAC+TGG 0.468444 tig0031250:-27761 None:intergenic
AAGAAGAGGAAGGTTGTGAA+GGG 0.470752 tig0031250:+27705 Msa1445940:CDS
GAGATTTGAGGAGAGGGAAA+AGG 0.471046 tig0031250:+27866 Msa1445940:CDS
CATGAAGACACTAGGGTTGA+GGG 0.472525 tig0031250:+28272 Msa1445940:CDS
GGTGTCTGAGTGGGAAGCTA+TGG 0.472685 tig0031250:+27935 Msa1445940:CDS
TTTATCCTTGGCAATGGAGT+TGG 0.472751 tig0031250:+27172 Msa1445940:CDS
TTGAGTATGAGGCTGAAGAT+GGG 0.475420 tig0031250:+27589 Msa1445940:CDS
GGAGAGTTTGCGAGCAGAGT+GGG 0.476865 tig0031250:+27839 Msa1445940:CDS
GGGAAAAGAGATTTGAGGAG+AGG 0.478354 tig0031250:+27859 Msa1445940:CDS
GTTGCACTTGTTGTTGGTGG+TGG 0.479517 tig0031250:+27369 Msa1445940:CDS
TGGTAGTGGTGGTGGAGGAA+TGG 0.479826 tig0031250:+27467 Msa1445940:CDS
TTTGAGTATGAGGCTGAAGA+TGG 0.480668 tig0031250:+27588 Msa1445940:CDS
GGAGAAGGAAAATGAAGATA+AGG 0.482423 tig0031250:+27956 Msa1445940:CDS
ATATGGGTCATTCAGGGGAT+GGG 0.484086 tig0031250:+27508 Msa1445940:CDS
TGAATTGCAGGAGGCTGGAA+TGG 0.484463 tig0031250:+28033 Msa1445940:CDS
AATCAGCACCGAGCAGAAAT+GGG 0.488690 tig0031250:+28080 Msa1445940:CDS
ATGGCTGAGTTTGGGCATAT+GGG 0.491211 tig0031250:+27492 Msa1445940:CDS
GGTTCATCATGTTCGCGATC+CGG 0.491682 tig0031250:+27146 Msa1445940:CDS
TTTCTGGTGGAGAGTGTGAT+GGG 0.492044 tig0031250:+27271 Msa1445940:CDS
GAAGAAGAGGAAGGTTGTGA+AGG 0.494715 tig0031250:+27704 Msa1445940:CDS
AGTTGATTCGTGAGAGGGAA+CGG 0.495920 tig0031250:+28000 Msa1445940:CDS
GTTGATTCGTGAGAGGGAAC+GGG 0.496093 tig0031250:+28001 Msa1445940:CDS
AGTTGAGAGAAATGGAGGTT+CGG 0.499877 tig0031250:+27772 Msa1445940:CDS
TATGAGGCATCAGTATTTGT+TGG 0.501879 tig0031250:+27221 Msa1445940:CDS
GGAAAAGAGATTTGAGGAGA+GGG 0.501904 tig0031250:+27860 Msa1445940:CDS
AGTGAGTTTGATTGGATGGA+GGG 0.504786 tig0031250:+27297 Msa1445940:CDS
CGGTGGTTTATCCTTGGCAA+TGG 0.505813 tig0031250:+27166 Msa1445940:CDS
TCATGAAGACACTAGGGTTG+AGG 0.507498 tig0031250:+28271 Msa1445940:CDS
GCACTTGTCCCATTTCTGCT+CGG 0.509836 tig0031250:-28088 None:intergenic
GGCGATCGGGGAGATCGAGA+TGG 0.510554 tig0031250:+27438 Msa1445940:CDS
TGAGGAGAGGGAAAAGGAGA+GGG 0.511422 tig0031250:+27872 Msa1445940:CDS
TTGAGCAGCGCGAGATGGAA+AGG 0.511596 tig0031250:+27796 Msa1445940:CDS
AATGGTTATGTGTATGAGGA+AGG 0.513055 tig0031250:+27657 Msa1445940:CDS
AGGAGAGGGAAAAGGTTAGG+AGG 0.513975 tig0031250:+27907 Msa1445940:CDS
GAATTCACATAACAAGCAAT+CGG 0.514657 tig0031250:-27123 None:intergenic
AGATGGAAAGGGAGCGCGAG+AGG 0.523211 tig0031250:+27808 Msa1445940:CDS
AGGAAAATGAAGATAAGGAA+AGG 0.524324 tig0031250:+27961 Msa1445940:CDS
TAATGAGTTGTTAGGATTTG+GGG 0.530909 tig0031250:+27413 Msa1445940:CDS
GTGAAGCAGAAGATCAAGAA+AGG 0.531659 tig0031250:+27243 Msa1445940:CDS
TTGGGCATATGGGTCATTCA+GGG 0.531915 tig0031250:+27502 Msa1445940:CDS
CATATGGGTCATTCAGGGGA+TGG 0.533007 tig0031250:+27507 Msa1445940:CDS
CTACAAAGGTGCAGAATATG+AGG 0.533670 tig0031250:+27205 Msa1445940:CDS
TGAAGCAGAAGATCAAGAAA+GGG 0.534144 tig0031250:+27244 Msa1445940:CDS
AGGAGGAGTTGATTCGTGAG+AGG 0.535605 tig0031250:+27994 Msa1445940:CDS
GAGGAAGGTTGTGAAGGGGA+TGG 0.536250 tig0031250:+27710 Msa1445940:CDS
TCGGTTTGAGCAGCGCGAGA+TGG 0.536873 tig0031250:+27791 Msa1445940:CDS
GATCCGATAGGCCAGCAGGT+TGG 0.537517 tig0031250:-28181 None:intergenic
GCATTGTTCATGAAGACACT+AGG 0.537607 tig0031250:+28264 Msa1445940:CDS
AAATGGGACAAGTGCAGACT+CGG 0.539639 tig0031250:+28096 Msa1445940:CDS
ATGGTTATGTGTATGAGGAA+GGG 0.542891 tig0031250:+27658 Msa1445940:CDS
ATGAGAGAAGATGCCGAGAA+TGG 0.544829 tig0031250:+27639 Msa1445940:CDS
GATGTTGCACTTGTTGTTGG+TGG 0.545721 tig0031250:+27366 Msa1445940:CDS
CGAGAATGGTTATGTGTATG+AGG 0.549700 tig0031250:+27653 Msa1445940:CDS
GAATTTGAAGAAGAAGAGGA+AGG 0.550240 tig0031250:+27695 Msa1445940:CDS
GGAGCGCGAGAGGCAGAGGA+GGG 0.550973 tig0031250:+27818 Msa1445940:CDS
AGAAGAGGAAGGTTGTGAAG+GGG 0.552071 tig0031250:+27706 Msa1445940:CDS
TAAGGAAAGGAAAAGAAGAG+AGG 0.554492 tig0031250:+27974 Msa1445940:CDS
GGTCATTCAGGGGATGGGGA+TGG 0.556528 tig0031250:+27513 Msa1445940:CDS
TAGTGAGTTTGATTGGATGG+AGG 0.557266 tig0031250:+27296 Msa1445940:CDS
GGAGGCTGGAATGGAAGAAG+AGG 0.557572 tig0031250:+28042 Msa1445940:CDS
TTGAGGAGAGGGAAAAGGAG+AGG 0.560102 tig0031250:+27871 Msa1445940:CDS
GTATGATCCGATAGGCCAGC+AGG 0.563059 tig0031250:-28185 None:intergenic
TATGAGGAAGGGGAAGTGAC+GGG 0.564004 tig0031250:+27669 Msa1445940:CDS
GTATGAGGAAGGGGAAGTGA+CGG 0.565215 tig0031250:+27668 Msa1445940:CDS
GGAGGAGTTGATTCGTGAGA+GGG 0.566702 tig0031250:+27995 Msa1445940:CDS
GAGTAGTGAGTTTGATTGGA+TGG 0.566726 tig0031250:+27293 Msa1445940:CDS
TTGGAAAGATGTTTCTACAA+AGG 0.568440 tig0031250:+27191 Msa1445940:CDS
GGAGAGGGAAAAGGAGAGGG+AGG 0.569831 tig0031250:+27875 Msa1445940:CDS
ATGAAGACACTAGGGTTGAG+GGG 0.570754 tig0031250:+28273 Msa1445940:CDS
GAGGCAGAGGGTGTCTGAGT+GGG 0.575975 tig0031250:+27926 Msa1445940:CDS
GATGGGTTTCTTGGTAGTGG+TGG 0.578171 tig0031250:+27456 Msa1445940:CDS
GGAAAGGAAAAGAAGAGAGG+AGG 0.579942 tig0031250:+27977 Msa1445940:CDS
GGATTTGGGGACGGCGATCG+GGG 0.579977 tig0031250:+27426 Msa1445940:CDS
GGTGGTGGTGGTACTGAGCA+CGG 0.580119 tig0031250:+27384 Msa1445940:CDS
GTTCGAATTTGAAGAAGAAG+AGG 0.584176 tig0031250:+27691 Msa1445940:CDS
AATCTTAGCAGCCAATTGCT+CGG 0.585356 tig0031250:+28137 Msa1445940:CDS
TGAGCAGCGCGAGATGGAAA+GGG 0.586120 tig0031250:+27797 Msa1445940:CDS
TGGGCATATGGGTCATTCAG+GGG 0.587540 tig0031250:+27503 Msa1445940:CDS
GCGATCGGGGAGATCGAGAT+GGG 0.587801 tig0031250:+27439 Msa1445940:CDS
TGAGTATGAGGCTGAAGATG+GGG 0.591979 tig0031250:+27590 Msa1445940:CDS
AGGGGATGGAAAAGAAGATG+TGG 0.593535 tig0031250:+27724 Msa1445940:CDS
GTGAGTTTGATTGGATGGAG+GGG 0.594823 tig0031250:+27298 Msa1445940:CDS
TGCCAATGATTCCTCCAAGA+AGG 0.595383 tig0031250:+26995 None:intergenic
CATTGTTCATGAAGACACTA+GGG 0.596869 tig0031250:+28265 Msa1445940:CDS
GGAAAAGGTTAGGAGGCAGA+GGG 0.600754 tig0031250:+27914 Msa1445940:CDS
CATCTTCGCGAGAGAACCAT+CGG 0.605545 tig0031250:-27076 None:intergenic
TCTTTCCAACTCCATTGCCA+AGG 0.610858 tig0031250:-27177 None:intergenic
TCATCATGTTCGCGATCCGG+TGG 0.612918 tig0031250:+27149 Msa1445940:CDS
TATGGTGAAATGGTTACCGA+TGG 0.622176 tig0031250:+27060 Msa1445940:CDS
TGCTCGGTATATTCTCGCAG+TGG 0.627720 tig0031250:+28153 Msa1445940:CDS
GGAGGCAGAGGGTGTCTGAG+TGG 0.630414 tig0031250:+27925 Msa1445940:CDS
GGGGCAGTTGAGAGAAATGG+AGG 0.630533 tig0031250:+27767 Msa1445940:CDS
TGAGTGGGAAGCTATGGAGA+AGG 0.634490 tig0031250:+27941 Msa1445940:CDS
GAGTTGTTAGGATTTGGGGA+CGG 0.639788 tig0031250:+27417 Msa1445940:CDS
GGATGGAAAAGAAGATGTGG+AGG 0.640165 tig0031250:+27727 Msa1445940:CDS
AGAGTGGGAAAAGAGATTTG+AGG 0.643952 tig0031250:+27854 Msa1445940:CDS
TGAAGACACTAGGGTTGAGG+GGG 0.643955 tig0031250:+28274 Msa1445940:CDS
TAGCACTAGTATGATCCGAT+AGG 0.648983 tig0031250:-28193 None:intergenic
CATTGCCAAGGATAAACCAC+CGG 0.650532 tig0031250:-27165 None:intergenic
GAAGCAGAAGATCAAGAAAG+GGG 0.662267 tig0031250:+27245 Msa1445940:CDS
GGGAGAGTTTGCGAGCAGAG+TGG 0.666790 tig0031250:+27838 Msa1445940:CDS
AAGAGAGAATGAATTGCAGG+AGG 0.671244 tig0031250:+28024 Msa1445940:CDS
GTATGAGGCTGAAGATGGGG+AGG 0.684362 tig0031250:+27593 Msa1445940:CDS
TATGGATGGAGTTGATAATG+AGG 0.685698 tig0031250:+27551 Msa1445940:CDS
GATGGAAAAGAAGATGTGGA+GGG 0.695627 tig0031250:+27728 Msa1445940:CDS
GGTGGTGGTACTGAGCACGG+TGG 0.808285 tig0031250:+27387 Msa1445940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTCTAATTTTCTTAGGTATA+AGG + tig0031250:27332-27351 Msa1445940:CDS 25.0%
! AATAATGAGTTGTTAGGATT+TGG + tig0031250:27411-27430 Msa1445940:CDS 25.0%
! ATAATGAGTTGTTAGGATTT+GGG + tig0031250:27412-27431 Msa1445940:CDS 25.0%
! CAAAATTTGCATCATGTAAA+TGG + tig0031250:28242-28261 Msa1445940:CDS 25.0%
!! GTCTAATTTTCTTAGGTATA+AGG + tig0031250:27332-27351 Msa1445940:CDS 25.0%
! AATAATGAGTTGTTAGGATT+TGG + tig0031250:27411-27430 Msa1445940:CDS 25.0%
! ATAATGAGTTGTTAGGATTT+GGG + tig0031250:27412-27431 Msa1445940:CDS 25.0%
! CAAAATTTGCATCATGTAAA+TGG + tig0031250:28242-28261 Msa1445940:CDS 25.0%
GAATTCACATAACAAGCAAT+CGG - tig0031250:27126-27145 None:intergenic 30.0%
!! GATTGCTTGTTATGTGAATT+CGG + tig0031250:27125-27144 Msa1445940:CDS 30.0%
! TTGGAAAGATGTTTCTACAA+AGG + tig0031250:27191-27210 Msa1445940:CDS 30.0%
!! CTCATTGGTCTAATTTTCTT+AGG + tig0031250:27325-27344 Msa1445940:CDS 30.0%
! CTTAGGTATAAGGAAGTTTT+TGG + tig0031250:27342-27361 Msa1445940:CDS 30.0%
TAATGAGTTGTTAGGATTTG+GGG + tig0031250:27413-27432 Msa1445940:CDS 30.0%
ATAATGAGGTGATAGGTTTA+GGG + tig0031250:27565-27584 Msa1445940:CDS 30.0%
!! TGAATTTTAATGGGAATGGA+GGG + tig0031250:27616-27635 Msa1445940:CDS 30.0%
AGGAAAATGAAGATAAGGAA+AGG + tig0031250:27961-27980 Msa1445940:CDS 30.0%
GCATCATTTGTGAAAGATAA+TGG - tig0031250:28223-28242 None:intergenic 30.0%
GAAGATCAATTCATTGTTGA+TGG + tig0031250:28305-28324 Msa1445940:CDS 30.0%
GAATTCACATAACAAGCAAT+CGG - tig0031250:27126-27145 None:intergenic 30.0%
!! GATTGCTTGTTATGTGAATT+CGG + tig0031250:27125-27144 Msa1445940:CDS 30.0%
! TTGGAAAGATGTTTCTACAA+AGG + tig0031250:27191-27210 Msa1445940:CDS 30.0%
!! CTCATTGGTCTAATTTTCTT+AGG + tig0031250:27325-27344 Msa1445940:CDS 30.0%
! CTTAGGTATAAGGAAGTTTT+TGG + tig0031250:27342-27361 Msa1445940:CDS 30.0%
TAATGAGTTGTTAGGATTTG+GGG + tig0031250:27413-27432 Msa1445940:CDS 30.0%
ATAATGAGGTGATAGGTTTA+GGG + tig0031250:27565-27584 Msa1445940:CDS 30.0%
!! TGAATTTTAATGGGAATGGA+GGG + tig0031250:27616-27635 Msa1445940:CDS 30.0%
AGGAAAATGAAGATAAGGAA+AGG + tig0031250:27961-27980 Msa1445940:CDS 30.0%
GCATCATTTGTGAAAGATAA+TGG - tig0031250:28223-28242 None:intergenic 30.0%
GAAGATCAATTCATTGTTGA+TGG + tig0031250:28305-28324 Msa1445940:CDS 30.0%
AAAACCCTAATCGACAAGTA+TGG + tig0031250:27042-27061 Msa1445940:CDS 35.0%
! TTCACCATACTTGTCGATTA+GGG - tig0031250:27049-27068 None:intergenic 35.0%
! TTTCACCATACTTGTCGATT+AGG - tig0031250:27050-27069 None:intergenic 35.0%
AATCGACAAGTATGGTGAAA+TGG + tig0031250:27050-27069 Msa1445940:CDS 35.0%
! TATGAGGCATCAGTATTTGT+TGG + tig0031250:27221-27240 Msa1445940:CDS 35.0%
TGAAGCAGAAGATCAAGAAA+GGG + tig0031250:27244-27263 Msa1445940:CDS 35.0%
GGTGGAAATAATGAGTTGTT+AGG + tig0031250:27405-27424 Msa1445940:CDS 35.0%
!! TATGGATGGAGTTGATAATG+AGG + tig0031250:27551-27570 Msa1445940:CDS 35.0%
GATAATGAGGTGATAGGTTT+AGG + tig0031250:27564-27583 Msa1445940:CDS 35.0%
!! ATGGGGAGGTGAATTTTAAT+GGG + tig0031250:27607-27626 Msa1445940:CDS 35.0%
!! GAGGTGAATTTTAATGGGAA+TGG + tig0031250:27612-27631 Msa1445940:CDS 35.0%
!! GTGAATTTTAATGGGAATGG+AGG + tig0031250:27615-27634 Msa1445940:CDS 35.0%
CTCATACACATAACCATTCT+CGG - tig0031250:27655-27674 None:intergenic 35.0%
AATGGTTATGTGTATGAGGA+AGG + tig0031250:27657-27676 Msa1445940:CDS 35.0%
ATGGTTATGTGTATGAGGAA+GGG + tig0031250:27658-27677 Msa1445940:CDS 35.0%
GTTCGAATTTGAAGAAGAAG+AGG + tig0031250:27691-27710 Msa1445940:CDS 35.0%
GAATTTGAAGAAGAAGAGGA+AGG + tig0031250:27695-27714 Msa1445940:CDS 35.0%
GGAGAAGGAAAATGAAGATA+AGG + tig0031250:27956-27975 Msa1445940:CDS 35.0%
TAAGGAAAGGAAAAGAAGAG+AGG + tig0031250:27974-27993 Msa1445940:CDS 35.0%
CATTGTTCATGAAGACACTA+GGG + tig0031250:28265-28284 Msa1445940:CDS 35.0%
AAAACCCTAATCGACAAGTA+TGG + tig0031250:27042-27061 Msa1445940:CDS 35.0%
! TTCACCATACTTGTCGATTA+GGG - tig0031250:27049-27068 None:intergenic 35.0%
! TTTCACCATACTTGTCGATT+AGG - tig0031250:27050-27069 None:intergenic 35.0%
AATCGACAAGTATGGTGAAA+TGG + tig0031250:27050-27069 Msa1445940:CDS 35.0%
! TATGAGGCATCAGTATTTGT+TGG + tig0031250:27221-27240 Msa1445940:CDS 35.0%
TGAAGCAGAAGATCAAGAAA+GGG + tig0031250:27244-27263 Msa1445940:CDS 35.0%
GGTGGAAATAATGAGTTGTT+AGG + tig0031250:27405-27424 Msa1445940:CDS 35.0%
!! TATGGATGGAGTTGATAATG+AGG + tig0031250:27551-27570 Msa1445940:CDS 35.0%
GATAATGAGGTGATAGGTTT+AGG + tig0031250:27564-27583 Msa1445940:CDS 35.0%
!! ATGGGGAGGTGAATTTTAAT+GGG + tig0031250:27607-27626 Msa1445940:CDS 35.0%
!! GAGGTGAATTTTAATGGGAA+TGG + tig0031250:27612-27631 Msa1445940:CDS 35.0%
!! GTGAATTTTAATGGGAATGG+AGG + tig0031250:27615-27634 Msa1445940:CDS 35.0%
CTCATACACATAACCATTCT+CGG - tig0031250:27655-27674 None:intergenic 35.0%
AATGGTTATGTGTATGAGGA+AGG + tig0031250:27657-27676 Msa1445940:CDS 35.0%
ATGGTTATGTGTATGAGGAA+GGG + tig0031250:27658-27677 Msa1445940:CDS 35.0%
GTTCGAATTTGAAGAAGAAG+AGG + tig0031250:27691-27710 Msa1445940:CDS 35.0%
GAATTTGAAGAAGAAGAGGA+AGG + tig0031250:27695-27714 Msa1445940:CDS 35.0%
GGAGAAGGAAAATGAAGATA+AGG + tig0031250:27956-27975 Msa1445940:CDS 35.0%
TAAGGAAAGGAAAAGAAGAG+AGG + tig0031250:27974-27993 Msa1445940:CDS 35.0%
CATTGTTCATGAAGACACTA+GGG + tig0031250:28265-28284 Msa1445940:CDS 35.0%
TTCCTCCAAGAAGGAAGAAA+TGG + tig0031250:27004-27023 Msa1445940:CDS 40.0%
TCAGTCCATTTCTTCCTTCT+TGG - tig0031250:27012-27031 None:intergenic 40.0%
TATGGTGAAATGGTTACCGA+TGG + tig0031250:27060-27079 Msa1445940:CDS 40.0%
TTTATCCTTGGCAATGGAGT+TGG + tig0031250:27172-27191 Msa1445940:CDS 40.0%
! CTACAAAGGTGCAGAATATG+AGG + tig0031250:27205-27224 Msa1445940:CDS 40.0%
GTGAAGCAGAAGATCAAGAA+AGG + tig0031250:27243-27262 Msa1445940:CDS 40.0%
GAAGCAGAAGATCAAGAAAG+GGG + tig0031250:27245-27264 Msa1445940:CDS 40.0%
! ATCAAGAAAGGGGAGTTTTC+TGG + tig0031250:27255-27274 Msa1445940:CDS 40.0%
ATGGGAGTAGTGAGTTTGAT+TGG + tig0031250:27289-27308 Msa1445940:CDS 40.0%
GAGTAGTGAGTTTGATTGGA+TGG + tig0031250:27293-27312 Msa1445940:CDS 40.0%
TAGTGAGTTTGATTGGATGG+AGG + tig0031250:27296-27315 Msa1445940:CDS 40.0%
AGTGAGTTTGATTGGATGGA+GGG + tig0031250:27297-27316 Msa1445940:CDS 40.0%
GAATGGATATGGCTGAGTTT+GGG + tig0031250:27484-27503 Msa1445940:CDS 40.0%
!! GGAGTTGATAATGAGGTGAT+AGG + tig0031250:27558-27577 Msa1445940:CDS 40.0%
! AGGTTTAGGGTTTGAGTATG+AGG + tig0031250:27578-27597 Msa1445940:CDS 40.0%
TTTGAGTATGAGGCTGAAGA+TGG + tig0031250:27588-27607 Msa1445940:CDS 40.0%
TTGAGTATGAGGCTGAAGAT+GGG + tig0031250:27589-27608 Msa1445940:CDS 40.0%
! GATGGGGAGGTGAATTTTAA+TGG + tig0031250:27606-27625 Msa1445940:CDS 40.0%
CGAGAATGGTTATGTGTATG+AGG + tig0031250:27653-27672 Msa1445940:CDS 40.0%
TGGTTATGTGTATGAGGAAG+GGG + tig0031250:27659-27678 Msa1445940:CDS 40.0%
AAGAAGAGGAAGGTTGTGAA+GGG + tig0031250:27705-27724 Msa1445940:CDS 40.0%
GATGGAAAAGAAGATGTGGA+GGG + tig0031250:27728-27747 Msa1445940:CDS 40.0%
! AGGGTTTTTGCTAACCAGTT+GGG + tig0031250:27747-27766 Msa1445940:CDS 40.0%
AGTTGAGAGAAATGGAGGTT+CGG + tig0031250:27772-27791 Msa1445940:CDS 40.0%
AGAGTGGGAAAAGAGATTTG+AGG + tig0031250:27854-27873 Msa1445940:CDS 40.0%
GGAAAAGAGATTTGAGGAGA+GGG + tig0031250:27860-27879 Msa1445940:CDS 40.0%
AAGAGAGAATGAATTGCAGG+AGG + tig0031250:28024-28043 Msa1445940:CDS 40.0%
AATCTTAGCAGCCAATTGCT+CGG + tig0031250:28137-28156 Msa1445940:CDS 40.0%
TAGCACTAGTATGATCCGAT+AGG - tig0031250:28196-28215 None:intergenic 40.0%
GCATTGTTCATGAAGACACT+AGG + tig0031250:28264-28283 Msa1445940:CDS 40.0%
TTCCTCCAAGAAGGAAGAAA+TGG + tig0031250:27004-27023 Msa1445940:CDS 40.0%
TCAGTCCATTTCTTCCTTCT+TGG - tig0031250:27012-27031 None:intergenic 40.0%
TATGGTGAAATGGTTACCGA+TGG + tig0031250:27060-27079 Msa1445940:CDS 40.0%
TTTATCCTTGGCAATGGAGT+TGG + tig0031250:27172-27191 Msa1445940:CDS 40.0%
! CTACAAAGGTGCAGAATATG+AGG + tig0031250:27205-27224 Msa1445940:CDS 40.0%
GTGAAGCAGAAGATCAAGAA+AGG + tig0031250:27243-27262 Msa1445940:CDS 40.0%
GAAGCAGAAGATCAAGAAAG+GGG + tig0031250:27245-27264 Msa1445940:CDS 40.0%
! ATCAAGAAAGGGGAGTTTTC+TGG + tig0031250:27255-27274 Msa1445940:CDS 40.0%
ATGGGAGTAGTGAGTTTGAT+TGG + tig0031250:27289-27308 Msa1445940:CDS 40.0%
GAGTAGTGAGTTTGATTGGA+TGG + tig0031250:27293-27312 Msa1445940:CDS 40.0%
TAGTGAGTTTGATTGGATGG+AGG + tig0031250:27296-27315 Msa1445940:CDS 40.0%
AGTGAGTTTGATTGGATGGA+GGG + tig0031250:27297-27316 Msa1445940:CDS 40.0%
GAATGGATATGGCTGAGTTT+GGG + tig0031250:27484-27503 Msa1445940:CDS 40.0%
!! GGAGTTGATAATGAGGTGAT+AGG + tig0031250:27558-27577 Msa1445940:CDS 40.0%
! AGGTTTAGGGTTTGAGTATG+AGG + tig0031250:27578-27597 Msa1445940:CDS 40.0%
TTTGAGTATGAGGCTGAAGA+TGG + tig0031250:27588-27607 Msa1445940:CDS 40.0%
TTGAGTATGAGGCTGAAGAT+GGG + tig0031250:27589-27608 Msa1445940:CDS 40.0%
! GATGGGGAGGTGAATTTTAA+TGG + tig0031250:27606-27625 Msa1445940:CDS 40.0%
CGAGAATGGTTATGTGTATG+AGG + tig0031250:27653-27672 Msa1445940:CDS 40.0%
TGGTTATGTGTATGAGGAAG+GGG + tig0031250:27659-27678 Msa1445940:CDS 40.0%
AAGAAGAGGAAGGTTGTGAA+GGG + tig0031250:27705-27724 Msa1445940:CDS 40.0%
GATGGAAAAGAAGATGTGGA+GGG + tig0031250:27728-27747 Msa1445940:CDS 40.0%
! AGGGTTTTTGCTAACCAGTT+GGG + tig0031250:27747-27766 Msa1445940:CDS 40.0%
AGTTGAGAGAAATGGAGGTT+CGG + tig0031250:27772-27791 Msa1445940:CDS 40.0%
AGAGTGGGAAAAGAGATTTG+AGG + tig0031250:27854-27873 Msa1445940:CDS 40.0%
GGAAAAGAGATTTGAGGAGA+GGG + tig0031250:27860-27879 Msa1445940:CDS 40.0%
AAGAGAGAATGAATTGCAGG+AGG + tig0031250:28024-28043 Msa1445940:CDS 40.0%
AATCTTAGCAGCCAATTGCT+CGG + tig0031250:28137-28156 Msa1445940:CDS 40.0%
TAGCACTAGTATGATCCGAT+AGG - tig0031250:28196-28215 None:intergenic 40.0%
GCATTGTTCATGAAGACACT+AGG + tig0031250:28264-28283 Msa1445940:CDS 40.0%
GTCCATTTCTTCCTTCTTGG+AGG - tig0031250:27009-27028 None:intergenic 45.0%
CATTGCCAAGGATAAACCAC+CGG - tig0031250:27168-27187 None:intergenic 45.0%
TCTTTCCAACTCCATTGCCA+AGG - tig0031250:27180-27199 None:intergenic 45.0%
! AAGAAAGGGGAGTTTTCTGG+TGG + tig0031250:27258-27277 Msa1445940:CDS 45.0%
!! TTTTCTGGTGGAGAGTGTGA+TGG + tig0031250:27270-27289 Msa1445940:CDS 45.0%
! TTTCTGGTGGAGAGTGTGAT+GGG + tig0031250:27271-27290 Msa1445940:CDS 45.0%
GTGAGTTTGATTGGATGGAG+GGG + tig0031250:27298-27317 Msa1445940:CDS 45.0%
!! GGTGATGTTGCACTTGTTGT+TGG + tig0031250:27363-27382 Msa1445940:CDS 45.0%
!! GATGTTGCACTTGTTGTTGG+TGG + tig0031250:27366-27385 Msa1445940:CDS 45.0%
GAGTTGTTAGGATTTGGGGA+CGG + tig0031250:27417-27436 Msa1445940:CDS 45.0%
GGAATGGATATGGCTGAGTT+TGG + tig0031250:27483-27502 Msa1445940:CDS 45.0%
TATGGCTGAGTTTGGGCATA+TGG + tig0031250:27491-27510 Msa1445940:CDS 45.0%
ATGGCTGAGTTTGGGCATAT+GGG + tig0031250:27492-27511 Msa1445940:CDS 45.0%
TTTGGGCATATGGGTCATTC+AGG + tig0031250:27501-27520 Msa1445940:CDS 45.0%
TTGGGCATATGGGTCATTCA+GGG + tig0031250:27502-27521 Msa1445940:CDS 45.0%
ATATGGGTCATTCAGGGGAT+GGG + tig0031250:27508-27527 Msa1445940:CDS 45.0%
! TGGTGATTTTGCGGTTGCTA+TGG + tig0031250:27533-27552 Msa1445940:CDS 45.0%
! GATTTTGCGGTTGCTATGGA+TGG + tig0031250:27537-27556 Msa1445940:CDS 45.0%
TGAGTATGAGGCTGAAGATG+GGG + tig0031250:27590-27609 Msa1445940:CDS 45.0%
ATGAGAGAAGATGCCGAGAA+TGG + tig0031250:27639-27658 Msa1445940:CDS 45.0%
GAAGAAGAGGAAGGTTGTGA+AGG + tig0031250:27704-27723 Msa1445940:CDS 45.0%
AGAAGAGGAAGGTTGTGAAG+GGG + tig0031250:27706-27725 Msa1445940:CDS 45.0%
AGGGGATGGAAAAGAAGATG+TGG + tig0031250:27724-27743 Msa1445940:CDS 45.0%
GGATGGAAAAGAAGATGTGG+AGG + tig0031250:27727-27746 Msa1445940:CDS 45.0%
! GAGGGTTTTTGCTAACCAGT+TGG + tig0031250:27746-27765 Msa1445940:CDS 45.0%
! GGGTTTTTGCTAACCAGTTG+GGG + tig0031250:27748-27767 Msa1445940:CDS 45.0%
GGGAAAAGAGATTTGAGGAG+AGG + tig0031250:27859-27878 Msa1445940:CDS 45.0%
GAGATTTGAGGAGAGGGAAA+AGG + tig0031250:27866-27885 Msa1445940:CDS 45.0%
AGAAGGAGAGGGAAAAGGTT+AGG + tig0031250:27904-27923 Msa1445940:CDS 45.0%
GGAAAGGAAAAGAAGAGAGG+AGG + tig0031250:27977-27996 Msa1445940:CDS 45.0%
!! AGTTGATTCGTGAGAGGGAA+CGG + tig0031250:28000-28019 Msa1445940:CDS 45.0%
GGGAAGAGAGAATGAATTGC+AGG + tig0031250:28021-28040 Msa1445940:CDS 45.0%
! AAATCAGCACCGAGCAGAAA+TGG + tig0031250:28079-28098 Msa1445940:CDS 45.0%
! AATCAGCACCGAGCAGAAAT+GGG + tig0031250:28080-28099 Msa1445940:CDS 45.0%
AAATGGGACAAGTGCAGACT+CGG + tig0031250:28096-28115 Msa1445940:CDS 45.0%
GCGAGAATATACCGAGCAAT+TGG - tig0031250:28151-28170 None:intergenic 45.0%
TCATGAAGACACTAGGGTTG+AGG + tig0031250:28271-28290 Msa1445940:CDS 45.0%
CATGAAGACACTAGGGTTGA+GGG + tig0031250:28272-28291 Msa1445940:CDS 45.0%
ATGAAGACACTAGGGTTGAG+GGG + tig0031250:28273-28292 Msa1445940:CDS 45.0%
GTCCATTTCTTCCTTCTTGG+AGG - tig0031250:27009-27028 None:intergenic 45.0%
CATTGCCAAGGATAAACCAC+CGG - tig0031250:27168-27187 None:intergenic 45.0%
TCTTTCCAACTCCATTGCCA+AGG - tig0031250:27180-27199 None:intergenic 45.0%
! AAGAAAGGGGAGTTTTCTGG+TGG + tig0031250:27258-27277 Msa1445940:CDS 45.0%
!! TTTTCTGGTGGAGAGTGTGA+TGG + tig0031250:27270-27289 Msa1445940:CDS 45.0%
! TTTCTGGTGGAGAGTGTGAT+GGG + tig0031250:27271-27290 Msa1445940:CDS 45.0%
GTGAGTTTGATTGGATGGAG+GGG + tig0031250:27298-27317 Msa1445940:CDS 45.0%
!! GGTGATGTTGCACTTGTTGT+TGG + tig0031250:27363-27382 Msa1445940:CDS 45.0%
!! GATGTTGCACTTGTTGTTGG+TGG + tig0031250:27366-27385 Msa1445940:CDS 45.0%
GAGTTGTTAGGATTTGGGGA+CGG + tig0031250:27417-27436 Msa1445940:CDS 45.0%
GGAATGGATATGGCTGAGTT+TGG + tig0031250:27483-27502 Msa1445940:CDS 45.0%
TATGGCTGAGTTTGGGCATA+TGG + tig0031250:27491-27510 Msa1445940:CDS 45.0%
ATGGCTGAGTTTGGGCATAT+GGG + tig0031250:27492-27511 Msa1445940:CDS 45.0%
TTTGGGCATATGGGTCATTC+AGG + tig0031250:27501-27520 Msa1445940:CDS 45.0%
TTGGGCATATGGGTCATTCA+GGG + tig0031250:27502-27521 Msa1445940:CDS 45.0%
ATATGGGTCATTCAGGGGAT+GGG + tig0031250:27508-27527 Msa1445940:CDS 45.0%
! TGGTGATTTTGCGGTTGCTA+TGG + tig0031250:27533-27552 Msa1445940:CDS 45.0%
! GATTTTGCGGTTGCTATGGA+TGG + tig0031250:27537-27556 Msa1445940:CDS 45.0%
TGAGTATGAGGCTGAAGATG+GGG + tig0031250:27590-27609 Msa1445940:CDS 45.0%
ATGAGAGAAGATGCCGAGAA+TGG + tig0031250:27639-27658 Msa1445940:CDS 45.0%
GAAGAAGAGGAAGGTTGTGA+AGG + tig0031250:27704-27723 Msa1445940:CDS 45.0%
AGAAGAGGAAGGTTGTGAAG+GGG + tig0031250:27706-27725 Msa1445940:CDS 45.0%
AGGGGATGGAAAAGAAGATG+TGG + tig0031250:27724-27743 Msa1445940:CDS 45.0%
GGATGGAAAAGAAGATGTGG+AGG + tig0031250:27727-27746 Msa1445940:CDS 45.0%
! GAGGGTTTTTGCTAACCAGT+TGG + tig0031250:27746-27765 Msa1445940:CDS 45.0%
! GGGTTTTTGCTAACCAGTTG+GGG + tig0031250:27748-27767 Msa1445940:CDS 45.0%
GGGAAAAGAGATTTGAGGAG+AGG + tig0031250:27859-27878 Msa1445940:CDS 45.0%
GAGATTTGAGGAGAGGGAAA+AGG + tig0031250:27866-27885 Msa1445940:CDS 45.0%
AGAAGGAGAGGGAAAAGGTT+AGG + tig0031250:27904-27923 Msa1445940:CDS 45.0%
GGAAAGGAAAAGAAGAGAGG+AGG + tig0031250:27977-27996 Msa1445940:CDS 45.0%
!! AGTTGATTCGTGAGAGGGAA+CGG + tig0031250:28000-28019 Msa1445940:CDS 45.0%
GGGAAGAGAGAATGAATTGC+AGG + tig0031250:28021-28040 Msa1445940:CDS 45.0%
! AAATCAGCACCGAGCAGAAA+TGG + tig0031250:28079-28098 Msa1445940:CDS 45.0%
! AATCAGCACCGAGCAGAAAT+GGG + tig0031250:28080-28099 Msa1445940:CDS 45.0%
AAATGGGACAAGTGCAGACT+CGG + tig0031250:28096-28115 Msa1445940:CDS 45.0%
GCGAGAATATACCGAGCAAT+TGG - tig0031250:28151-28170 None:intergenic 45.0%
TCATGAAGACACTAGGGTTG+AGG + tig0031250:28271-28290 Msa1445940:CDS 45.0%
CATGAAGACACTAGGGTTGA+GGG + tig0031250:28272-28291 Msa1445940:CDS 45.0%
ATGAAGACACTAGGGTTGAG+GGG + tig0031250:28273-28292 Msa1445940:CDS 45.0%
CATCTTCGCGAGAGAACCAT+CGG - tig0031250:27079-27098 None:intergenic 50.0%
GGTTCATCATGTTCGCGATC+CGG + tig0031250:27146-27165 Msa1445940:CDS 50.0%
CGGTGGTTTATCCTTGGCAA+TGG + tig0031250:27166-27185 Msa1445940:CDS 50.0%
GGATGGAGGGGTTAACTCAT+TGG + tig0031250:27310-27329 Msa1445940:CDS 50.0%
!! GTTGCACTTGTTGTTGGTGG+TGG + tig0031250:27369-27388 Msa1445940:CDS 50.0%
! GGAGATCGAGATGGGTTTCT+TGG + tig0031250:27447-27466 Msa1445940:CDS 50.0%
! CGAGATGGGTTTCTTGGTAG+TGG + tig0031250:27453-27472 Msa1445940:CDS 50.0%
!! GATGGGTTTCTTGGTAGTGG+TGG + tig0031250:27456-27475 Msa1445940:CDS 50.0%
!! TTTCTTGGTAGTGGTGGTGG+AGG + tig0031250:27462-27481 Msa1445940:CDS 50.0%
!! TGGTGGTGGAGGAATGGATA+TGG + tig0031250:27473-27492 Msa1445940:CDS 50.0%
TGGGCATATGGGTCATTCAG+GGG + tig0031250:27503-27522 Msa1445940:CDS 50.0%
CATATGGGTCATTCAGGGGA+TGG + tig0031250:27507-27526 Msa1445940:CDS 50.0%
TATGGGTCATTCAGGGGATG+GGG + tig0031250:27509-27528 Msa1445940:CDS 50.0%
! GGATGGGGATGGTGATTTTG+CGG + tig0031250:27524-27543 Msa1445940:CDS 50.0%
GTATGAGGAAGGGGAAGTGA+CGG + tig0031250:27668-27687 Msa1445940:CDS 50.0%
TATGAGGAAGGGGAAGTGAC+GGG + tig0031250:27669-27688 Msa1445940:CDS 50.0%
TTTCTCTCAACTGCCCCAAC+TGG - tig0031250:27764-27783 None:intergenic 50.0%
GTTGGGGCAGTTGAGAGAAA+TGG + tig0031250:27764-27783 Msa1445940:CDS 50.0%
TTGAGGAGAGGGAAAAGGAG+AGG + tig0031250:27871-27890 Msa1445940:CDS 50.0%
TGAGGAGAGGGAAAAGGAGA+GGG + tig0031250:27872-27891 Msa1445940:CDS 50.0%
GGAAAAGGAGAGGGAGGAAA+GGG + tig0031250:27881-27900 Msa1445940:CDS 50.0%
AAGGGAGAAGGAGAGGGAAA+AGG + tig0031250:27899-27918 Msa1445940:CDS 50.0%
AGGAGAGGGAAAAGGTTAGG+AGG + tig0031250:27907-27926 Msa1445940:CDS 50.0%
GGAAAAGGTTAGGAGGCAGA+GGG + tig0031250:27914-27933 Msa1445940:CDS 50.0%
TGAGTGGGAAGCTATGGAGA+AGG + tig0031250:27941-27960 Msa1445940:CDS 50.0%
!! AGGAGGAGTTGATTCGTGAG+AGG + tig0031250:27994-28013 Msa1445940:CDS 50.0%
!! GGAGGAGTTGATTCGTGAGA+GGG + tig0031250:27995-28014 Msa1445940:CDS 50.0%
!! GTTGATTCGTGAGAGGGAAC+GGG + tig0031250:28001-28020 Msa1445940:CDS 50.0%
GAGAATGAATTGCAGGAGGC+TGG + tig0031250:28028-28047 Msa1445940:CDS 50.0%
TGAATTGCAGGAGGCTGGAA+TGG + tig0031250:28033-28052 Msa1445940:CDS 50.0%
GCACTTGTCCCATTTCTGCT+CGG - tig0031250:28091-28110 None:intergenic 50.0%
TGCTCGGTATATTCTCGCAG+TGG + tig0031250:28153-28172 Msa1445940:CDS 50.0%
TGAAGACACTAGGGTTGAGG+GGG + tig0031250:28274-28293 Msa1445940:CDS 50.0%
CATCTTCGCGAGAGAACCAT+CGG - tig0031250:27079-27098 None:intergenic 50.0%
GGTTCATCATGTTCGCGATC+CGG + tig0031250:27146-27165 Msa1445940:CDS 50.0%
CGGTGGTTTATCCTTGGCAA+TGG + tig0031250:27166-27185 Msa1445940:CDS 50.0%
GGATGGAGGGGTTAACTCAT+TGG + tig0031250:27310-27329 Msa1445940:CDS 50.0%
!! GTTGCACTTGTTGTTGGTGG+TGG + tig0031250:27369-27388 Msa1445940:CDS 50.0%
! GGAGATCGAGATGGGTTTCT+TGG + tig0031250:27447-27466 Msa1445940:CDS 50.0%
! CGAGATGGGTTTCTTGGTAG+TGG + tig0031250:27453-27472 Msa1445940:CDS 50.0%
!! GATGGGTTTCTTGGTAGTGG+TGG + tig0031250:27456-27475 Msa1445940:CDS 50.0%
!! TTTCTTGGTAGTGGTGGTGG+AGG + tig0031250:27462-27481 Msa1445940:CDS 50.0%
!! TGGTGGTGGAGGAATGGATA+TGG + tig0031250:27473-27492 Msa1445940:CDS 50.0%
TGGGCATATGGGTCATTCAG+GGG + tig0031250:27503-27522 Msa1445940:CDS 50.0%
CATATGGGTCATTCAGGGGA+TGG + tig0031250:27507-27526 Msa1445940:CDS 50.0%
TATGGGTCATTCAGGGGATG+GGG + tig0031250:27509-27528 Msa1445940:CDS 50.0%
! GGATGGGGATGGTGATTTTG+CGG + tig0031250:27524-27543 Msa1445940:CDS 50.0%
GTATGAGGAAGGGGAAGTGA+CGG + tig0031250:27668-27687 Msa1445940:CDS 50.0%
TATGAGGAAGGGGAAGTGAC+GGG + tig0031250:27669-27688 Msa1445940:CDS 50.0%
TTTCTCTCAACTGCCCCAAC+TGG - tig0031250:27764-27783 None:intergenic 50.0%
GTTGGGGCAGTTGAGAGAAA+TGG + tig0031250:27764-27783 Msa1445940:CDS 50.0%
TTGAGGAGAGGGAAAAGGAG+AGG + tig0031250:27871-27890 Msa1445940:CDS 50.0%
TGAGGAGAGGGAAAAGGAGA+GGG + tig0031250:27872-27891 Msa1445940:CDS 50.0%
GGAAAAGGAGAGGGAGGAAA+GGG + tig0031250:27881-27900 Msa1445940:CDS 50.0%
AAGGGAGAAGGAGAGGGAAA+AGG + tig0031250:27899-27918 Msa1445940:CDS 50.0%
AGGAGAGGGAAAAGGTTAGG+AGG + tig0031250:27907-27926 Msa1445940:CDS 50.0%
GGAAAAGGTTAGGAGGCAGA+GGG + tig0031250:27914-27933 Msa1445940:CDS 50.0%
TGAGTGGGAAGCTATGGAGA+AGG + tig0031250:27941-27960 Msa1445940:CDS 50.0%
!! AGGAGGAGTTGATTCGTGAG+AGG + tig0031250:27994-28013 Msa1445940:CDS 50.0%
!! GGAGGAGTTGATTCGTGAGA+GGG + tig0031250:27995-28014 Msa1445940:CDS 50.0%
!! GTTGATTCGTGAGAGGGAAC+GGG + tig0031250:28001-28020 Msa1445940:CDS 50.0%
GAGAATGAATTGCAGGAGGC+TGG + tig0031250:28028-28047 Msa1445940:CDS 50.0%
TGAATTGCAGGAGGCTGGAA+TGG + tig0031250:28033-28052 Msa1445940:CDS 50.0%
GCACTTGTCCCATTTCTGCT+CGG - tig0031250:28091-28110 None:intergenic 50.0%
TGCTCGGTATATTCTCGCAG+TGG + tig0031250:28153-28172 Msa1445940:CDS 50.0%
TGAAGACACTAGGGTTGAGG+GGG + tig0031250:28274-28293 Msa1445940:CDS 50.0%
TCATCATGTTCGCGATCCGG+TGG + tig0031250:27149-27168 Msa1445940:CDS 55.0%
GCGATCCGGTGGTTTATCCT+TGG + tig0031250:27160-27179 Msa1445940:CDS 55.0%
!! GCACTTGTTGTTGGTGGTGG+TGG + tig0031250:27372-27391 Msa1445940:CDS 55.0%
TAGGATTTGGGGACGGCGAT+CGG + tig0031250:27424-27443 Msa1445940:CDS 55.0%
!! GGGTTTCTTGGTAGTGGTGG+TGG + tig0031250:27459-27478 Msa1445940:CDS 55.0%
!! TGGTAGTGGTGGTGGAGGAA+TGG + tig0031250:27467-27486 Msa1445940:CDS 55.0%
GTATGAGGCTGAAGATGGGG+AGG + tig0031250:27593-27612 Msa1445940:CDS 55.0%
GAGGAAGGTTGTGAAGGGGA+TGG + tig0031250:27710-27729 Msa1445940:CDS 55.0%
GGGGCAGTTGAGAGAAATGG+AGG + tig0031250:27767-27786 Msa1445940:CDS 55.0%
TTGAGCAGCGCGAGATGGAA+AGG + tig0031250:27796-27815 Msa1445940:CDS 55.0%
TGAGCAGCGCGAGATGGAAA+GGG + tig0031250:27797-27816 Msa1445940:CDS 55.0%
GGAGAGTTTGCGAGCAGAGT+GGG + tig0031250:27839-27858 Msa1445940:CDS 55.0%
GGGAAAAGGAGAGGGAGGAA+AGG + tig0031250:27880-27899 Msa1445940:CDS 55.0%
GGAGGAAAGGGAGAAGGAGA+GGG + tig0031250:27893-27912 Msa1445940:CDS 55.0%
GGGAAAAGGTTAGGAGGCAG+AGG + tig0031250:27913-27932 Msa1445940:CDS 55.0%
GGTGTCTGAGTGGGAAGCTA+TGG + tig0031250:27935-27954 Msa1445940:CDS 55.0%
GGAGGCTGGAATGGAAGAAG+AGG + tig0031250:28042-28061 Msa1445940:CDS 55.0%
ATCCGATAGGCCAGCAGGTT+GGG - tig0031250:28183-28202 None:intergenic 55.0%
GTATGATCCGATAGGCCAGC+AGG - tig0031250:28188-28207 None:intergenic 55.0%
TCATCATGTTCGCGATCCGG+TGG + tig0031250:27149-27168 Msa1445940:CDS 55.0%
GCGATCCGGTGGTTTATCCT+TGG + tig0031250:27160-27179 Msa1445940:CDS 55.0%
!! GCACTTGTTGTTGGTGGTGG+TGG + tig0031250:27372-27391 Msa1445940:CDS 55.0%
TAGGATTTGGGGACGGCGAT+CGG + tig0031250:27424-27443 Msa1445940:CDS 55.0%
!! GGGTTTCTTGGTAGTGGTGG+TGG + tig0031250:27459-27478 Msa1445940:CDS 55.0%
!! TGGTAGTGGTGGTGGAGGAA+TGG + tig0031250:27467-27486 Msa1445940:CDS 55.0%
GTATGAGGCTGAAGATGGGG+AGG + tig0031250:27593-27612 Msa1445940:CDS 55.0%
GAGGAAGGTTGTGAAGGGGA+TGG + tig0031250:27710-27729 Msa1445940:CDS 55.0%
GGGGCAGTTGAGAGAAATGG+AGG + tig0031250:27767-27786 Msa1445940:CDS 55.0%
TTGAGCAGCGCGAGATGGAA+AGG + tig0031250:27796-27815 Msa1445940:CDS 55.0%
TGAGCAGCGCGAGATGGAAA+GGG + tig0031250:27797-27816 Msa1445940:CDS 55.0%
GGAGAGTTTGCGAGCAGAGT+GGG + tig0031250:27839-27858 Msa1445940:CDS 55.0%
GGGAAAAGGAGAGGGAGGAA+AGG + tig0031250:27880-27899 Msa1445940:CDS 55.0%
GGAGGAAAGGGAGAAGGAGA+GGG + tig0031250:27893-27912 Msa1445940:CDS 55.0%
GGGAAAAGGTTAGGAGGCAG+AGG + tig0031250:27913-27932 Msa1445940:CDS 55.0%
GGTGTCTGAGTGGGAAGCTA+TGG + tig0031250:27935-27954 Msa1445940:CDS 55.0%
GGAGGCTGGAATGGAAGAAG+AGG + tig0031250:28042-28061 Msa1445940:CDS 55.0%
ATCCGATAGGCCAGCAGGTT+GGG - tig0031250:28183-28202 None:intergenic 55.0%
GTATGATCCGATAGGCCAGC+AGG - tig0031250:28188-28207 None:intergenic 55.0%
!! GGTGGTGGTGGTACTGAGCA+CGG + tig0031250:27384-27403 Msa1445940:CDS 60.0%
AGGATTTGGGGACGGCGATC+GGG + tig0031250:27425-27444 Msa1445940:CDS 60.0%
GCGATCGGGGAGATCGAGAT+GGG + tig0031250:27439-27458 Msa1445940:CDS 60.0%
GGTCATTCAGGGGATGGGGA+TGG + tig0031250:27513-27532 Msa1445940:CDS 60.0%
! TCGGTTTGAGCAGCGCGAGA+TGG + tig0031250:27791-27810 Msa1445940:CDS 60.0%
! AGATGGAAAGGGAGCGCGAG+AGG + tig0031250:27808-27827 Msa1445940:CDS 60.0%
GGGAGAGTTTGCGAGCAGAG+TGG + tig0031250:27838-27857 Msa1445940:CDS 60.0%
GGAGAGGGAAAAGGAGAGGG+AGG + tig0031250:27875-27894 Msa1445940:CDS 60.0%
GGAGAGGGAGGAAAGGGAGA+AGG + tig0031250:27887-27906 Msa1445940:CDS 60.0%
GGGAGGAAAGGGAGAAGGAG+AGG + tig0031250:27892-27911 Msa1445940:CDS 60.0%
!! GAGGCAGAGGGTGTCTGAGT+GGG + tig0031250:27926-27945 Msa1445940:CDS 60.0%
! TGCCCAACCTGCTGGCCTAT+CGG + tig0031250:28178-28197 Msa1445940:CDS 60.0%
GATCCGATAGGCCAGCAGGT+TGG - tig0031250:28184-28203 None:intergenic 60.0%
!! GGTGGTGGTGGTACTGAGCA+CGG + tig0031250:27384-27403 Msa1445940:CDS 60.0%
AGGATTTGGGGACGGCGATC+GGG + tig0031250:27425-27444 Msa1445940:CDS 60.0%
GCGATCGGGGAGATCGAGAT+GGG + tig0031250:27439-27458 Msa1445940:CDS 60.0%
GGTCATTCAGGGGATGGGGA+TGG + tig0031250:27513-27532 Msa1445940:CDS 60.0%
! TCGGTTTGAGCAGCGCGAGA+TGG + tig0031250:27791-27810 Msa1445940:CDS 60.0%
! AGATGGAAAGGGAGCGCGAG+AGG + tig0031250:27808-27827 Msa1445940:CDS 60.0%
GGGAGAGTTTGCGAGCAGAG+TGG + tig0031250:27838-27857 Msa1445940:CDS 60.0%
GGAGAGGGAAAAGGAGAGGG+AGG + tig0031250:27875-27894 Msa1445940:CDS 60.0%
GGAGAGGGAGGAAAGGGAGA+AGG + tig0031250:27887-27906 Msa1445940:CDS 60.0%
GGGAGGAAAGGGAGAAGGAG+AGG + tig0031250:27892-27911 Msa1445940:CDS 60.0%
!! GAGGCAGAGGGTGTCTGAGT+GGG + tig0031250:27926-27945 Msa1445940:CDS 60.0%
! TGCCCAACCTGCTGGCCTAT+CGG + tig0031250:28178-28197 Msa1445940:CDS 60.0%
GATCCGATAGGCCAGCAGGT+TGG - tig0031250:28184-28203 None:intergenic 60.0%
! GGTGGTGGTACTGAGCACGG+TGG + tig0031250:27387-27406 Msa1445940:CDS 65.0%
GGATTTGGGGACGGCGATCG+GGG + tig0031250:27426-27445 Msa1445940:CDS 65.0%
GGCGATCGGGGAGATCGAGA+TGG + tig0031250:27438-27457 Msa1445940:CDS 65.0%
! AAAGGGAGCGCGAGAGGCAG+AGG + tig0031250:27814-27833 Msa1445940:CDS 65.0%
!! GGAGGCAGAGGGTGTCTGAG+TGG + tig0031250:27925-27944 Msa1445940:CDS 65.0%
!! CAGTGGACTGCCCAACCTGC+TGG + tig0031250:28170-28189 Msa1445940:CDS 65.0%
! GGTGGTGGTACTGAGCACGG+TGG + tig0031250:27387-27406 Msa1445940:CDS 65.0%
GGATTTGGGGACGGCGATCG+GGG + tig0031250:27426-27445 Msa1445940:CDS 65.0%
GGCGATCGGGGAGATCGAGA+TGG + tig0031250:27438-27457 Msa1445940:CDS 65.0%
! AAAGGGAGCGCGAGAGGCAG+AGG + tig0031250:27814-27833 Msa1445940:CDS 65.0%
!! GGAGGCAGAGGGTGTCTGAG+TGG + tig0031250:27925-27944 Msa1445940:CDS 65.0%
!! CAGTGGACTGCCCAACCTGC+TGG + tig0031250:28170-28189 Msa1445940:CDS 65.0%
GGAGCGCGAGAGGCAGAGGA+GGG + tig0031250:27818-27837 Msa1445940:CDS 70.0%
GGAGCGCGAGAGGCAGAGGA+GGG + tig0031250:27818-27837 Msa1445940:CDS 70.0%
! GGGAGCGCGAGAGGCAGAGG+AGG + tig0031250:27817-27836 Msa1445940:CDS 75.0%
! GGGAGCGCGAGAGGCAGAGG+AGG + tig0031250:27817-27836 Msa1445940:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0031250 gene 27000 28331 27000 ID=Msa1445940;Name=Msa1445940
tig0031250 mRNA 27000 28331 27000 ID=Msa1445940-mRNA-1;Parent=Msa1445940;Name=Msa1445940-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|443
tig0031250 exon 27000 28331 27000 ID=Msa1445940-mRNA-1:exon:15198;Parent=Msa1445940-mRNA-1
tig0031250 CDS 27000 28331 27000 ID=Msa1445940-mRNA-1:cds;Parent=Msa1445940-mRNA-1
Gene Sequence

>Msa1445940

ATGATTCCTCCAAGAAGGAAGAAATGGACTGAAGCAGAAGAGAAAACCCTAATCGACAAGTATGGTGAAATGGTTACCGATGGTTCTCTCGCGAAGATGAGAACTCGCGAGAAGAAGTTTAAACCGATTGCTTGTTATGTGAATTCGGTTCATCATGTTCGCGATCCGGTGGTTTATCCTTGGCAATGGAGTTGGAAAGATGTTTCTACAAAGGTGCAGAATATGAGGCATCAGTATTTGTTGGTGAAGCAGAAGATCAAGAAAGGGGAGTTTTCTGGTGGAGAGTGTGATGGGAGTAGTGAGTTTGATTGGATGGAGGGGTTAACTCATTGGTCTAATTTTCTTAGGTATAAGGAAGTTTTTGGTGATGTTGCACTTGTTGTTGGTGGTGGTGGTACTGAGCACGGTGGAAATAATGAGTTGTTAGGATTTGGGGACGGCGATCGGGGAGATCGAGATGGGTTTCTTGGTAGTGGTGGTGGAGGAATGGATATGGCTGAGTTTGGGCATATGGGTCATTCAGGGGATGGGGATGGTGATTTTGCGGTTGCTATGGATGGAGTTGATAATGAGGTGATAGGTTTAGGGTTTGAGTATGAGGCTGAAGATGGGGAGGTGAATTTTAATGGGAATGGAGGGATGAGAGAAGATGCCGAGAATGGTTATGTGTATGAGGAAGGGGAAGTGACGGGTTCGAATTTGAAGAAGAAGAGGAAGGTTGTGAAGGGGATGGAAAAGAAGATGTGGAGGGTTTTTGCTAACCAGTTGGGGCAGTTGAGAGAAATGGAGGTTCGGTTTGAGCAGCGCGAGATGGAAAGGGAGCGCGAGAGGCAGAGGAGGGAGAGTTTGCGAGCAGAGTGGGAAAAGAGATTTGAGGAGAGGGAAAAGGAGAGGGAGGAAAGGGAGAAGGAGAGGGAAAAGGTTAGGAGGCAGAGGGTGTCTGAGTGGGAAGCTATGGAGAAGGAAAATGAAGATAAGGAAAGGAAAAGAAGAGAGGAGGAGTTGATTCGTGAGAGGGAACGGGAAGAGAGAATGAATTGCAGGAGGCTGGAATGGAAGAAGAGGATTGACGATATGCTAAATCAGCACCGAGCAGAAATGGGACAAGTGCAGACTCGGATTCTTCACGAACAACAGAATCTTAGCAGCCAATTGCTCGGTATATTCTCGCAGTGGACTGCCCAACCTGCTGGCCTATCGGATCATACTAGTGCTAGCAACCATTATCTTTCACAAATGATGCAAAATTTGCATCATGTAAATGGCATTGTTCATGAAGACACTAGGGTTGAGGGGGATAATCAAGAAGATCAATTCATTGTTGATGGATAA

Protein sequence

>Msa1445940

MIPPRRKKWTEAEEKTLIDKYGEMVTDGSLAKMRTREKKFKPIACYVNSVHHVRDPVVYPWQWSWKDVSTKVQNMRHQYLLVKQKIKKGEFSGGECDGSSEFDWMEGLTHWSNFLRYKEVFGDVALVVGGGGTEHGGNNELLGFGDGDRGDRDGFLGSGGGGMDMAEFGHMGHSGDGDGDFAVAMDGVDNEVIGLGFEYEAEDGEVNFNGNGGMREDAENGYVYEEGEVTGSNLKKKRKVVKGMEKKMWRVFANQLGQLREMEVRFEQREMERERERQRRESLRAEWEKRFEEREKEREEREKEREKVRRQRVSEWEAMEKENEDKERKRREEELIREREREERMNCRRLEWKKRIDDMLNQHRAEMGQVQTRILHEQQNLSSQLLGIFSQWTAQPAGLSDHTSASNHYLSQMMQNLHHVNGIVHEDTRVEGDNQEDQFIVDG*