AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0662630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662630 MtrunA17_Chr7g0271761 92.228 193 5 2 1 183 1 193 1.50e-126 353
Msa0662630 MtrunA17_Chr2g0294701 86.528 193 16 2 1 183 1 193 9.51e-122 341
Msa0662630 MtrunA17_Chr4g0068171 82.902 193 23 2 1 183 1 193 3.05e-117 330
Msa0662630 MtrunA17_Chr4g0072861 32.386 176 97 3 18 183 15 178 1.99e-20 83.6
Msa0662630 MtrunA17_Chr5g0401761 31.638 177 95 4 18 182 15 177 4.67e-18 77.4
Msa0662630 MtrunA17_Chr5g0413451 30.508 177 97 4 18 182 15 177 1.02e-16 73.9
Msa0662630 MtrunA17_Chr6g0450081 30.508 177 97 4 18 182 15 177 1.02e-16 73.9
Msa0662630 MtrunA17_Chr7g0270301 30.508 177 97 4 18 182 15 177 1.02e-16 73.9
Msa0662630 MtrunA17_Chr5g0413441 30.508 177 97 4 18 182 15 177 1.02e-16 73.9
Msa0662630 MtrunA17_Chr1g0194261 30.508 177 97 4 18 182 15 177 1.07e-16 73.9
Msa0662630 MtrunA17_Chr4g0012371 35.556 135 70 3 22 142 2 133 1.28e-16 73.2
Msa0662630 MtrunA17_Chr1g0188111 32.749 171 93 3 19 179 16 174 2.82e-16 72.8
Msa0662630 MtrunA17_Chr5g0434561 34.074 135 78 2 18 141 17 151 2.00e-15 70.5
Msa0662630 MtrunA17_Chr5g0395641 32.061 131 77 2 20 138 17 147 2.83e-15 70.5
Msa0662630 MtrunA17_Chr5g0401071 34.641 153 88 4 1 142 1 152 4.24e-15 69.7
Msa0662630 MtrunA17_Chr5g0395631 27.749 191 108 4 3 183 8 178 4.94e-15 69.7
Msa0662630 MtrunA17_Chr4g0039591 28.272 191 107 5 3 183 8 178 1.55e-14 68.6
Msa0662630 MtrunA17_Chr2g0287721 34.899 149 75 5 15 141 7 155 2.48e-14 68.2
Msa0662630 MtrunA17_Chr8g0373271 29.240 171 100 2 22 182 18 177 4.73e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662630 AT4G02080.1 88.083 193 13 2 1 183 1 193 4.94e-123 345
Msa0662630 AT3G62560.1 86.979 192 15 2 1 182 1 192 1.83e-120 338
Msa0662630 AT1G56330.1 84.896 192 19 2 1 182 1 192 9.80e-118 332
Msa0662630 AT1G09180.1 80.829 193 27 2 1 183 1 193 1.04e-111 316
Msa0662630 AT1G02620.1 90.566 106 10 0 78 183 17 122 5.20e-69 206
Msa0662630 AT2G24765.1 32.955 176 96 3 18 183 15 178 5.04e-20 83.2
Msa0662630 AT3G49870.1 36.601 153 85 4 1 142 1 152 1.40e-18 79.3
Msa0662630 AT5G67560.1 36.601 153 85 4 1 142 1 152 1.68e-17 76.6
Msa0662630 AT3G22950.1 32.184 174 96 3 19 182 16 177 4.42e-17 75.5
Msa0662630 AT3G22950.2 32.184 174 96 3 19 182 16 177 4.42e-17 75.5
Msa0662630 AT3G49870.2 37.984 129 69 3 25 142 5 133 5.13e-17 74.7
Msa0662630 AT2G47170.2 30.481 187 104 4 8 182 5 177 5.52e-17 75.1
Msa0662630 AT2G47170.1 30.481 187 104 4 8 182 5 177 5.52e-17 75.1
Msa0662630 AT2G47170.3 30.481 187 104 4 8 182 5 177 5.52e-17 75.1
Msa0662630 AT3G62290.3 30.481 187 104 4 8 182 5 177 7.48e-17 74.7
Msa0662630 AT3G62290.1 30.481 187 104 4 8 182 5 177 7.48e-17 74.7
Msa0662630 AT3G62290.2 30.481 187 104 4 8 182 5 177 7.48e-17 74.7
Msa0662630 AT3G49860.1 35.000 140 80 3 15 143 6 145 1.18e-16 73.9
Msa0662630 AT5G14670.2 30.508 177 97 4 18 182 15 177 1.41e-16 73.9
Msa0662630 AT5G14670.3 30.508 177 97 4 18 182 15 177 1.41e-16 73.9
Msa0662630 AT1G23490.1 30.508 177 97 4 18 182 15 177 1.47e-16 73.9
Msa0662630 AT1G70490.2 30.508 177 97 4 18 182 15 177 1.47e-16 73.9
Msa0662630 AT1G70490.7 30.508 177 97 4 18 182 15 177 1.47e-16 73.9
Msa0662630 AT1G70490.4 30.508 177 97 4 18 182 15 177 1.47e-16 73.9
Msa0662630 AT1G70490.3 30.508 177 97 4 18 182 15 177 1.47e-16 73.9
Msa0662630 AT1G70490.1 30.508 177 97 4 18 182 15 177 1.47e-16 73.9
Msa0662630 AT1G70490.6 30.508 177 97 4 18 182 15 177 1.47e-16 73.9
Msa0662630 AT1G70490.5 30.508 177 97 4 18 182 15 177 1.47e-16 73.9
Msa0662630 AT1G10630.1 30.508 177 97 4 18 182 15 177 1.53e-16 73.9
Msa0662630 AT1G10630.2 30.508 177 97 4 18 182 15 177 1.53e-16 73.9
Msa0662630 AT5G14670.1 30.508 177 97 4 18 182 15 177 1.56e-16 73.9
Msa0662630 AT2G24765.2 38.938 113 59 2 18 120 15 127 3.36e-16 72.0
Msa0662630 AT5G37680.1 33.824 136 79 2 18 142 17 152 5.47e-16 72.4
Msa0662630 AT2G18390.1 29.825 171 99 2 22 182 18 177 1.48e-14 68.6
Msa0662630 AT5G17060.2 27.225 191 109 4 3 183 8 178 4.87e-14 67.4
Msa0662630 AT5G17060.1 27.225 191 109 4 3 183 8 178 4.87e-14 67.4
Msa0662630 AT3G03120.1 30.822 146 83 2 3 138 8 145 1.29e-13 66.2
Msa0662630 AT2G15310.1 28.649 185 110 3 8 182 5 177 1.93e-13 66.2
Msa0662630 AT3G03120.2 30.534 131 73 3 3 123 8 130 9.08e-12 60.1
Msa0662630 AT5G37680.2 35.922 103 56 1 50 142 3 105 9.17e-12 60.1
Msa0662630 AT5G52210.1 33.557 149 71 5 15 138 7 152 2.47e-11 60.5
Msa0662630 AT5G52210.2 33.557 149 71 5 15 138 7 152 2.47e-11 60.5

Find 57 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCTCATCACTGCTTTC+GGG 0.178483 4_4:-380521 Msa0662630:five_prime_UTR
CTCTCTCTCATCACTGCTTT+CGG 0.226129 4_4:-380522 Msa0662630:five_prime_UTR
GTGCAGTATTGTGAAGAAAA+TGG 0.290748 4_4:-378079 Msa0662630:CDS
TCATCACTGCTTTCGGGGTT+AGG 0.311328 4_4:-380515 Msa0662630:five_prime_UTR
TTCTAGCATCGCTTGGATTA+TGG 0.331495 4_4:-380383 Msa0662630:CDS
AGACGAATTGCGTTACCATT+TGG 0.332275 4_4:-378178 Msa0662630:CDS
GACGAATTGCGTTACCATTT+GGG 0.348316 4_4:-378177 Msa0662630:CDS
GAGGCTAAGATCTTATTCTT+AGG 0.351250 4_4:-380354 Msa0662630:CDS
TCTCCTTTCTGATGAATCAT+TGG 0.399431 4_4:-378259 Msa0662630:CDS
AATGTCCCTTTCCTTGTCCT+TGG 0.407599 4_4:-378234 Msa0662630:CDS
ATCAAAAGATGGTGATAAGT+AGG 0.414998 4_4:-380607 None:intergenic
ACTGCTTTCGGGGTTAGGTT+AGG 0.415385 4_4:-380510 Msa0662630:five_prime_UTR
CATCAGAAGAGTTGAGTATT+GGG 0.422638 4_4:-379672 Msa0662630:CDS
TCGTCTTCTGAGGCAGCATA+TGG 0.429799 4_4:+378195 None:intergenic
TTCTTTAGTAAGAGATGGCT+TGG 0.431594 4_4:-378010 Msa0662630:three_prime_UTR
GATACTGAGTCGGCTGATGC+TGG 0.450131 4_4:+379698 None:intergenic
GTTATGGTGATGGTTTCAAA+TGG 0.456424 4_4:-378056 Msa0662630:CDS
TTAAATGTTGGAAGTGTTGT+TGG 0.466848 4_4:-377956 Msa0662630:three_prime_UTR
TACGGGGTTCTAGCATCGCT+TGG 0.473883 4_4:-380390 Msa0662630:CDS
TTATGGTGATGGTTTCAAAT+GGG 0.483238 4_4:-378055 Msa0662630:CDS
ACATCAGAAGAGTTGAGTAT+TGG 0.487462 4_4:-379673 Msa0662630:CDS
GGCTTGAGCAACTTCACCAC+TGG 0.494395 4_4:-378156 Msa0662630:CDS
TGCAGTATTGTGAAGAAAAT+GGG 0.501905 4_4:-378078 Msa0662630:CDS
TGAAGTTGCTCAAGCCCAAA+TGG 0.508916 4_4:+378163 None:intergenic
TAGAGTTCTTTAGTAAGAGA+TGG 0.510913 4_4:-378015 Msa0662630:three_prime_UTR
TGTTTCCAAGGACAAGGAAA+GGG 0.516162 4_4:+378229 None:intergenic
TCAAAAGATGGTGATAAGTA+GGG 0.517128 4_4:-380606 None:intergenic
GGTAGATGCAGTGGTCTACT+TGG 0.525431 4_4:-378334 Msa0662630:CDS
CTTCACCACTGGCAAGGGTA+AGG 0.533342 4_4:-378145 Msa0662630:CDS
TTGTTTCCAAGGACAAGGAA+AGG 0.535849 4_4:+378228 None:intergenic
AGTGATGAGAGAGAGTAGGT+TGG 0.539435 4_4:+380530 None:intergenic
AAGAAAATGGGTTATGGTGA+TGG 0.542914 4_4:-378066 Msa0662630:CDS
TTGCCAATGATTCATCAGAA+AGG 0.547484 4_4:+378256 None:intergenic
GAGACGAATTTCACGTTGTG+AGG 0.551573 4_4:+380477 None:intergenic
TTCTTAGGTCTCGACAACGC+CGG 0.556039 4_4:-380339 Msa0662630:CDS
GAGCAACTTCACCACTGGCA+AGG 0.556603 4_4:-378151 Msa0662630:CDS
AGCAACTTCACCACTGGCAA+GGG 0.561923 4_4:-378150 Msa0662630:CDS
ATTGTGAAGAAAATGGGTTA+TGG 0.564263 4_4:-378072 Msa0662630:CDS
CTTGGTTGATGCTTATGACA+AGG 0.569852 4_4:-378316 Msa0662630:CDS
AGACTCAAATGTCCGACCCA+TGG 0.577020 4_4:-378112 Msa0662630:CDS
CTCTCTCATCACTGCTTTCG+GGG 0.582470 4_4:-380520 Msa0662630:five_prime_UTR
TTTATTTCTATAAAATGACT+GGG 0.586086 4_4:-377894 Msa0662630:three_prime_UTR
TTGTTTCTGTACTTAAATGT+TGG 0.588028 4_4:-377968 Msa0662630:three_prime_UTR
GCTTGGATTATGGCAGAAAG+AGG 0.588367 4_4:-380373 Msa0662630:CDS
ATACTCAACTCTTCTGATGT+CGG 0.590024 4_4:+379676 None:intergenic
TCTGATGTCGGATACTGAGT+CGG 0.590760 4_4:+379688 None:intergenic
ACTGCACATGAATACCTCCA+TGG 0.596081 4_4:+378095 None:intergenic
CTGCACATGAATACCTCCAT+GGG 0.601771 4_4:+378096 None:intergenic
GTCTTTGAGCATATGAAGCA+AGG 0.603316 4_4:+380308 None:intergenic
GCTTCATATGCTCAAAGACG+AGG 0.605146 4_4:-380304 Msa0662630:intron
AAGCAGTGATGAGAGAGAGT+AGG 0.624754 4_4:+380526 None:intergenic
GTAACGCAATTCGTCTTCTG+AGG 0.630635 4_4:+378185 None:intergenic
ATTTACCTTACCCTTGCCAG+TGG 0.635981 4_4:+378140 None:intergenic
TGCAATGCAGGTAGATGCAG+TGG 0.654691 4_4:-378343 Msa0662630:intron
CTCAAATGTCCGACCCATGG+AGG 0.662910 4_4:-378109 Msa0662630:CDS
ACATGAATACCTCCATGGGT+CGG 0.682919 4_4:+378100 None:intergenic
TTTGAGCATATGAAGCAAGG+TGG 0.690241 4_4:+380311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATGATAATAATAAGT+GGG + chr4_4:378162-378181 None:intergenic 10.0%
!! ATAATAATGATAATAATAAG+TGG + chr4_4:378163-378182 None:intergenic 10.0%
!!! TATTTTTCATTTCTAAAATA+CGG - chr4_4:380584-380603 Msa0662630:five_prime_UTR 10.0%
!! ATATCTTAATCATGAAAATT+TGG - chr4_4:378908-378927 Msa0662630:intron 15.0%
!!! TTTTATTTCTATAAAATGAC+TGG - chr4_4:380530-380549 Msa0662630:five_prime_UTR 15.0%
!!! TTTATTTCTATAAAATGACT+GGG - chr4_4:380531-380550 Msa0662630:five_prime_UTR 15.0%
!!! ATAGAATATTTTGTAGTCAA+AGG - chr4_4:378253-378272 Msa0662630:CDS 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG - chr4_4:378782-378801 Msa0662630:intron 20.0%
!! AGACATAATATAATATAGGA+AGG + chr4_4:378945-378964 None:intergenic 20.0%
!! TCCTATATTATATTATGTCT+TGG - chr4_4:378945-378964 Msa0662630:intron 20.0%
!! TCCAAGACATAATATAATAT+AGG + chr4_4:378949-378968 None:intergenic 20.0%
!! TCAAAGTCAAATTAATTCAA+CGG + chr4_4:379506-379525 None:intergenic 20.0%
!! AGCAATAGTATAAAATGAAA+AGG + chr4_4:379933-379952 None:intergenic 20.0%
!! TATTACCGATATTGTTCTTT+TGG - chr4_4:378180-378199 Msa0662630:CDS 25.0%
!!! TTACTGTTGATAATGTTTTG+TGG - chr4_4:378227-378246 Msa0662630:CDS 25.0%
! TAAACATATCTCAACAAAAG+TGG + chr4_4:378463-378482 None:intergenic 25.0%
!! GTTTCTTTTATGATGAGAAT+TGG - chr4_4:378688-378707 Msa0662630:intron 25.0%
!!! CAAGTTTAAAGCTTTTGATT+TGG - chr4_4:378781-378800 Msa0662630:intron 25.0%
!!! AGTTTAAAGCTTTTGATTTG+GGG - chr4_4:378783-378802 Msa0662630:intron 25.0%
! ATTATATTATGTCTTGGACT+TGG - chr4_4:378951-378970 Msa0662630:intron 25.0%
!!! GTAACTTTATTTTGTTTGTG+TGG - chr4_4:378980-378999 Msa0662630:intron 25.0%
! TCTTATGTTCTTTACCATAA+TGG - chr4_4:379112-379131 Msa0662630:intron 25.0%
! ATACAATGGATAGAATAGAA+GGG + chr4_4:379435-379454 None:intergenic 25.0%
! TATACAATGGATAGAATAGA+AGG + chr4_4:379436-379455 None:intergenic 25.0%
! TTATAAGCTACTGTATACAA+TGG + chr4_4:379449-379468 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG + chr4_4:379681-379700 None:intergenic 25.0%
!!! GAATATCAATTTTGTTTCCA+AGG + chr4_4:380211-380230 None:intergenic 25.0%
!!! TTGTTTCTGTACTTAAATGT+TGG - chr4_4:380457-380476 Msa0662630:five_prime_UTR 25.0%
! ATCGTAAAAGACGATGTTTT+TGG - chr4_4:378001-378020 Msa0662630:three_prime_UTR 30.0%
!!! TTTTTGGTGGATTGGTTTTA+CGG - chr4_4:378017-378036 Msa0662630:exon 30.0%
CCATTCCAAAAGAACAATAT+CGG + chr4_4:378188-378207 None:intergenic 30.0%
!!! ATTGTTCTTTTGGAATGGAA+CGG - chr4_4:378190-378209 Msa0662630:CDS 30.0%
TTTACACTTATTACTGTCAG+CGG - chr4_4:378287-378306 Msa0662630:CDS 30.0%
TGAGATATGTTTATCCAAAC+AGG - chr4_4:378470-378489 Msa0662630:intron 30.0%
AACACACCAAAACAAGTTAA+GGG + chr4_4:378496-378515 None:intergenic 30.0%
AGAAACATTATACCAAGACT+CGG + chr4_4:378674-378693 None:intergenic 30.0%
!!! GTTTAAAGCTTTTGATTTGG+GGG - chr4_4:378784-378803 Msa0662630:intron 30.0%
!! ACAAAAAAGTATTGAAGGCA+TGG + chr4_4:378865-378884 None:intergenic 30.0%
!!! ATGCCTTCAATACTTTTTTG+TGG - chr4_4:378864-378883 Msa0662630:intron 30.0%
!! TAGCCACAAAAAAGTATTGA+AGG + chr4_4:378870-378889 None:intergenic 30.0%
TATAGAACTGCCTAAGATAT+TGG - chr4_4:379046-379065 Msa0662630:intron 30.0%
AGATTCTAAGCCAATATCTT+AGG + chr4_4:379059-379078 None:intergenic 30.0%
AAATGACTGTGTTTCCATTA+TGG + chr4_4:379129-379148 None:intergenic 30.0%
TGTAAGAGAAACCATTAGAA+AGG - chr4_4:379205-379224 Msa0662630:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG - chr4_4:379214-379233 Msa0662630:intron 30.0%
! CAATGAGTTGGATTCAAATA+TGG - chr4_4:379238-379257 Msa0662630:intron 30.0%
! GTTTTGCTTATAATAGTGAC+CGG + chr4_4:379716-379735 None:intergenic 30.0%
! GTTTTGCTTATAATAGTGAC+CGG - chr4_4:379716-379735 Msa0662630:intron 30.0%
AAAATACTACTTCATGTTCG+AGG + chr4_4:379789-379808 None:intergenic 30.0%
! AAACCATCAAGTTTGTTTCT+CGG + chr4_4:379846-379865 None:intergenic 30.0%
TCTCAGTTTAATATTGAGCA+GGG + chr4_4:379882-379901 None:intergenic 30.0%
TTCTCAGTTTAATATTGAGC+AGG + chr4_4:379883-379902 None:intergenic 30.0%
AGTACCTTATAAGACATTTC+TGG - chr4_4:379956-379975 Msa0662630:intron 30.0%
!! AAGATTTGCTGAGTCAAAAA+AGG - chr4_4:380133-380152 Msa0662630:intron 30.0%
TGCAGTATTGTGAAGAAAAT+GGG - chr4_4:380347-380366 Msa0662630:CDS 30.0%
!! ATTGTGAAGAAAATGGGTTA+TGG - chr4_4:380353-380372 Msa0662630:CDS 30.0%
!! TTATGGTGATGGTTTCAAAT+GGG - chr4_4:380370-380389 Msa0662630:CDS 30.0%
TAGAGTTCTTTAGTAAGAGA+TGG - chr4_4:380410-380429 Msa0662630:CDS 30.0%
!! TTAAATGTTGGAAGTGTTGT+TGG - chr4_4:380469-380488 Msa0662630:five_prime_UTR 30.0%
CCAAAAATTAACTGAACTGT+AGG + chr4_4:380559-380578 None:intergenic 30.0%
! CCTACAGTTCAGTTAATTTT+TGG - chr4_4:380556-380575 Msa0662630:five_prime_UTR 30.0%
!!! GTAAAAGACGATGTTTTTGG+TGG - chr4_4:378004-378023 Msa0662630:three_prime_UTR 35.0%
!!! TTTTGGTGGATTGGTTTTAC+GGG - chr4_4:378018-378037 Msa0662630:exon 35.0%
GAGGCTAAGATCTTATTCTT+AGG - chr4_4:378071-378090 Msa0662630:CDS 35.0%
!! CCGATATTGTTCTTTTGGAA+TGG - chr4_4:378185-378204 Msa0662630:CDS 35.0%
CAACACACCAAAACAAGTTA+AGG + chr4_4:378497-378516 None:intergenic 35.0%
AGAAACCAGAAAAGATTACG+TGG + chr4_4:378601-378620 None:intergenic 35.0%
ATATCTTTATCTCCGAGTCT+TGG - chr4_4:378659-378678 Msa0662630:intron 35.0%
ATACTCAACTCTTCTGATGT+CGG + chr4_4:378752-378771 None:intergenic 35.0%
ACATCAGAAGAGTTGAGTAT+TGG - chr4_4:378752-378771 Msa0662630:intron 35.0%
CATCAGAAGAGTTGAGTATT+GGG - chr4_4:378753-378772 Msa0662630:intron 35.0%
ATGAAAATTTGGATGCCAGT+AGG - chr4_4:378919-378938 Msa0662630:intron 35.0%
TATAATATAGGAAGGCCTAC+TGG + chr4_4:378937-378956 None:intergenic 35.0%
!!! CTTTATTTTGTTTGTGTGGC+TGG - chr4_4:378984-379003 Msa0662630:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG + chr4_4:379219-379238 None:intergenic 35.0%
! TTGAGTTTGCTTGTTCAACT+AGG - chr4_4:379522-379541 Msa0662630:intron 35.0%
TAATCAGATGTGCACATTCT+AGG - chr4_4:379545-379564 Msa0662630:intron 35.0%
AGATTAATACATACACCCTC+CGG - chr4_4:379585-379604 Msa0662630:intron 35.0%
TAACCGAGAAACAAACTTGA+TGG - chr4_4:379840-379859 Msa0662630:intron 35.0%
! GAGAAACAAACTTGATGGTT+TGG - chr4_4:379845-379864 Msa0662630:intron 35.0%
! AAACTTGATGGTTTGGACTT+TGG - chr4_4:379852-379871 Msa0662630:intron 35.0%
AGAGCCAGAAATGTCTTATA+AGG + chr4_4:379963-379982 None:intergenic 35.0%
TCTCCTTTCTGATGAATCAT+TGG - chr4_4:380166-380185 Msa0662630:intron 35.0%
TTGCCAATGATTCATCAGAA+AGG + chr4_4:380172-380191 None:intergenic 35.0%
!! CAATTTTGTTTCCAAGGACA+AGG + chr4_4:380205-380224 None:intergenic 35.0%
GTGCAGTATTGTGAAGAAAA+TGG - chr4_4:380346-380365 Msa0662630:CDS 35.0%
!! AAGAAAATGGGTTATGGTGA+TGG - chr4_4:380359-380378 Msa0662630:CDS 35.0%
!! GTTATGGTGATGGTTTCAAA+TGG - chr4_4:380369-380388 Msa0662630:CDS 35.0%
TTCTTTAGTAAGAGATGGCT+TGG - chr4_4:380415-380434 Msa0662630:exon 35.0%
!!! AGACGATGTTTTTGGTGGAT+TGG - chr4_4:378009-378028 Msa0662630:three_prime_UTR 40.0%
!!! TTTGGTGGATTGGTTTTACG+GGG - chr4_4:378019-378038 Msa0662630:exon 40.0%
TTCTAGCATCGCTTGGATTA+TGG - chr4_4:378042-378061 Msa0662630:CDS 40.0%
TTTGAGCATATGAAGCAAGG+TGG + chr4_4:378117-378136 None:intergenic 40.0%
GTCTTTGAGCATATGAAGCA+AGG + chr4_4:378120-378139 None:intergenic 40.0%
AAACAAGTTAAGGGCCTGTT+TGG + chr4_4:378487-378506 None:intergenic 40.0%
!!! AACAGGCCCTTAACTTGTTT+TGG - chr4_4:378487-378506 Msa0662630:intron 40.0%
!!! TTGTTTTGGTGTGTTGCTCT+TGG - chr4_4:378501-378520 Msa0662630:intron 40.0%
! TTCGACCACGTAATCTTTTC+TGG - chr4_4:378593-378612 Msa0662630:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG - chr4_4:379226-379245 Msa0662630:intron 40.0%
CAACGGCAGAAATGATTCAA+CGG + chr4_4:379489-379508 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4_4:379720-379739 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4_4:379719-379738 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4_4:379719-379738 Msa0662630:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4_4:379720-379739 Msa0662630:intron 40.0%
GGTGTATACTCTACTTGCTT+TGG - chr4_4:379741-379760 Msa0662630:intron 40.0%
GTATACTCTACTTGCTTTGG+TGG - chr4_4:379744-379763 Msa0662630:intron 40.0%
AACTGAGAAACATTACGTGC+TGG - chr4_4:380020-380039 Msa0662630:intron 40.0%
ATCATGAGTTGTTGCAATGC+AGG - chr4_4:380070-380089 Msa0662630:intron 40.0%
! CTTGGTTGATGCTTATGACA+AGG - chr4_4:380109-380128 Msa0662630:intron 40.0%
TGCTGAGTCAAAAAAGGAGT+TGG - chr4_4:380139-380158 Msa0662630:intron 40.0%
TGTTTCCAAGGACAAGGAAA+GGG + chr4_4:380199-380218 None:intergenic 40.0%
TTGTTTCCAAGGACAAGGAA+AGG + chr4_4:380200-380219 None:intergenic 40.0%
AGACGAATTGCGTTACCATT+TGG - chr4_4:380247-380266 Msa0662630:intron 40.0%
GACGAATTGCGTTACCATTT+GGG - chr4_4:380248-380267 Msa0662630:intron 40.0%
AGTGATGAGAGAGAGTAGGT+TGG + chr4_4:377898-377917 None:intergenic 45.0%
AAGCAGTGATGAGAGAGAGT+AGG + chr4_4:377902-377921 None:intergenic 45.0%
CTCTCTCTCATCACTGCTTT+CGG - chr4_4:377903-377922 Msa0662630:three_prime_UTR 45.0%
TCTCTCTCATCACTGCTTTC+GGG - chr4_4:377904-377923 Msa0662630:three_prime_UTR 45.0%
GAGACGAATTTCACGTTGTG+AGG + chr4_4:377951-377970 None:intergenic 45.0%
GCTTGGATTATGGCAGAAAG+AGG - chr4_4:378052-378071 Msa0662630:CDS 45.0%
!! ATGAAGCAAGGTGGTTTTGC+CGG + chr4_4:378108-378127 None:intergenic 45.0%
GCTTCATATGCTCAAAGACG+AGG - chr4_4:378121-378140 Msa0662630:CDS 45.0%
! TACTGTCAGCGGAGTTTTCT+AGG - chr4_4:378298-378317 Msa0662630:CDS 45.0%
TCTGATGTCGGATACTGAGT+CGG + chr4_4:378740-378759 None:intergenic 45.0%
ATCAGATTGCTCGTAGAGTC+TGG - chr4_4:378809-378828 Msa0662630:intron 45.0%
CTGGAAAGATTACTATGCCC+AGG - chr4_4:378828-378847 Msa0662630:intron 45.0%
GCATGGAAAAAGAGAGACCT+GGG + chr4_4:378848-378867 None:intergenic 45.0%
!! TTTTGTTTGTGTGGCTGGAC+TGG - chr4_4:378989-379008 Msa0662630:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_4:379307-379326 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_4:379308-379327 None:intergenic 45.0%
CAAGTAGAGTATACACCCTC+CGG + chr4_4:379738-379757 None:intergenic 45.0%
AATGTCCCTTTCCTTGTCCT+TGG - chr4_4:380191-380210 Msa0662630:intron 45.0%
GTAACGCAATTCGTCTTCTG+AGG + chr4_4:380243-380262 None:intergenic 45.0%
TGAAGTTGCTCAAGCCCAAA+TGG + chr4_4:380265-380284 None:intergenic 45.0%
ATTTACCTTACCCTTGCCAG+TGG + chr4_4:380288-380307 None:intergenic 45.0%
ACATGAATACCTCCATGGGT+CGG + chr4_4:380328-380347 None:intergenic 45.0%
CTGCACATGAATACCTCCAT+GGG + chr4_4:380332-380351 None:intergenic 45.0%
ACTGCACATGAATACCTCCA+TGG + chr4_4:380333-380352 None:intergenic 45.0%
CTCTCTCATCACTGCTTTCG+GGG - chr4_4:377905-377924 Msa0662630:three_prime_UTR 50.0%
TCATCACTGCTTTCGGGGTT+AGG - chr4_4:377910-377929 Msa0662630:three_prime_UTR 50.0%
ACTGCTTTCGGGGTTAGGTT+AGG - chr4_4:377915-377934 Msa0662630:three_prime_UTR 50.0%
TTCTTAGGTCTCGACAACGC+CGG - chr4_4:378086-378105 Msa0662630:CDS 50.0%
GGCATGGAAAAAGAGAGACC+TGG + chr4_4:378849-378868 None:intergenic 50.0%
ACTAAGTGGGGTCAGGTACA+TGG + chr4_4:379295-379314 None:intergenic 50.0%
ATGTACCTGACCCCACTTAG+TGG - chr4_4:379294-379313 Msa0662630:intron 50.0%
TGTACCTGACCCCACTTAGT+GGG - chr4_4:379295-379314 Msa0662630:intron 50.0%
TTATCCCACTAAGTGGGGTC+AGG + chr4_4:379302-379321 None:intergenic 50.0%
TGACCCCACTTAGTGGGATA+AGG - chr4_4:379301-379320 Msa0662630:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_4:379309-379328 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_4:379306-379325 Msa0662630:intron 50.0%
TGCAATGCAGGTAGATGCAG+TGG - chr4_4:380082-380101 Msa0662630:intron 50.0%
GGTAGATGCAGTGGTCTACT+TGG - chr4_4:380091-380110 Msa0662630:intron 50.0%
!! TCGTCTTCTGAGGCAGCATA+TGG + chr4_4:380233-380252 None:intergenic 50.0%
AGCAACTTCACCACTGGCAA+GGG - chr4_4:380275-380294 Msa0662630:intron 50.0%
AGACTCAAATGTCCGACCCA+TGG - chr4_4:380313-380332 Msa0662630:CDS 50.0%
! TACGGGGTTCTAGCATCGCT+TGG - chr4_4:378035-378054 Msa0662630:CDS 55.0%
GATACTGAGTCGGCTGATGC+TGG + chr4_4:378730-378749 None:intergenic 55.0%
GGCTTGAGCAACTTCACCAC+TGG - chr4_4:380269-380288 Msa0662630:intron 55.0%
GAGCAACTTCACCACTGGCA+AGG - chr4_4:380274-380293 Msa0662630:intron 55.0%
CTTCACCACTGGCAAGGGTA+AGG - chr4_4:380280-380299 Msa0662630:intron 55.0%
CTCAAATGTCCGACCCATGG+AGG - chr4_4:380316-380335 Msa0662630:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 377829 380618 377829 ID=Msa0662630;Name=Msa0662630
chr4_4 mRNA 377829 380618 377829 ID=Msa0662630-mRNA-1;Parent=Msa0662630;Name=Msa0662630-mRNA-1;_AED=0.09;_eAED=0.09;_QI=185|0.5|0.66|1|0.5|0.66|3|206|183
chr4_4 exon 377829 378355 377829 ID=Msa0662630-mRNA-1:exon:149;Parent=Msa0662630-mRNA-1
chr4_4 exon 379627 379728 379627 ID=Msa0662630-mRNA-1:exon:148;Parent=Msa0662630-mRNA-1
chr4_4 exon 380305 380618 380305 ID=Msa0662630-mRNA-1:exon:147;Parent=Msa0662630-mRNA-1
chr4_4 five_prime_UTR 380434 380618 380434 ID=Msa0662630-mRNA-1:five_prime_utr;Parent=Msa0662630-mRNA-1
chr4_4 CDS 380305 380433 380305 ID=Msa0662630-mRNA-1:cds;Parent=Msa0662630-mRNA-1
chr4_4 CDS 379627 379728 379627 ID=Msa0662630-mRNA-1:cds;Parent=Msa0662630-mRNA-1
chr4_4 CDS 378035 378355 378035 ID=Msa0662630-mRNA-1:cds;Parent=Msa0662630-mRNA-1
chr4_4 three_prime_UTR 377829 378034 377829 ID=Msa0662630-mRNA-1:three_prime_utr;Parent=Msa0662630-mRNA-1
Gene Sequence

>Msa0662630

ATGTTTTTGGTGGATTGGTTTTACGGGGTTCTAGCATCGCTTGGATTATGGCAGAAAGAGGCTAAGATCTTATTCTTAGGTCTCGACAACGCCGGCAAAACCACCTTGCTTCATATGCTCAAAGACGAGAGATTAGTCCAGCATCAGCCGACTCAGTATCCGACATCAGAAGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGGGTCATCAGATTGCTCGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTGGATGCTCTCCTTTCTGATGAATCATTGGCAAATGTCCCTTTCCTTGTCCTTGGAAACAAAATTGATATTCCATATGCTGCCTCAGAAGACGAATTGCGTTACCATTTGGGCTTGAGCAACTTCACCACTGGCAAGGGTAAGGTAAATTTGTCAGACTCAAATGTCCGACCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGTGATGGTTTCAAATGGGTTTCTCAGTACATCAAATAG

Protein sequence

>Msa0662630

MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGVIRLLVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK*