Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042510 | sp|P41129|RL132_BRANA | 85.437 | 206 | 30 | 0 | 2 | 207 | 1 | 206 | 2.68e-130 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0042510 | 0.849203 | 3.760210e-60 | -8.615850e-47 |
| Msa0003330 | Msa0042510 | 0.852101 | 5.758042e-61 | -8.615850e-47 |
| Msa0020870 | Msa0042510 | 0.827933 | 1.189763e-54 | -8.615850e-47 |
| Msa0026270 | Msa0042510 | 0.821962 | 3.054693e-53 | -8.615850e-47 |
| Msa0042510 | Msa0079560 | 0.993732 | 8.107267e-202 | -8.615850e-47 |
| Msa0042510 | Msa0086160 | 0.814660 | 1.376143e-51 | -8.615850e-47 |
| Msa0042510 | Msa0094210 | 0.822549 | 2.232420e-53 | -8.615850e-47 |
| Msa0042510 | Msa0108750 | 0.829247 | 5.728916e-55 | -8.615850e-47 |
| Msa0042510 | Msa0116600 | 0.834664 | 2.630564e-56 | -8.615850e-47 |
| Msa0042510 | Msa0116690 | 0.818756 | 1.660539e-52 | -8.615850e-47 |
| Msa0042510 | Msa0127230 | 0.992059 | 4.535867e-191 | -8.615850e-47 |
| Msa0042510 | Msa0128330 | 0.800976 | 1.119562e-48 | -8.615850e-47 |
| Msa0042510 | Msa0146910 | 0.847099 | 1.432245e-59 | -8.615850e-47 |
| Msa0042510 | Msa0167860 | 0.823914 | 1.071561e-53 | -8.615850e-47 |
| Msa0042510 | Msa0168320 | 0.861598 | 9.166099e-64 | -8.615850e-47 |
| Msa0042510 | Msa0182100 | 0.819263 | 1.273168e-52 | -8.615850e-47 |
| Msa0042510 | Msa0188740 | 0.825272 | 5.131914e-54 | -8.615850e-47 |
| Msa0042510 | Msa0192300 | 0.876893 | 9.717374e-69 | -8.615850e-47 |
| Msa0042510 | Msa0195030 | 0.811117 | 8.219890e-51 | -8.615850e-47 |
| Msa0042510 | Msa0216200 | 0.825161 | 5.451097e-54 | -8.615850e-47 |
| Msa0042510 | Msa0219090 | 0.856699 | 2.696343e-62 | -8.615850e-47 |
| Msa0042510 | Msa0233550 | 0.874743 | 5.318905e-68 | -8.615850e-47 |
| Msa0042510 | Msa0239420 | 0.855199 | 7.404926e-62 | -8.615850e-47 |
| Msa0042510 | Msa0256350 | 0.835706 | 1.435145e-56 | -8.615850e-47 |
| Msa0042510 | Msa0270160 | 0.862122 | 6.335801e-64 | -8.615850e-47 |
| Msa0042510 | Msa0274940 | 0.828203 | 1.024612e-54 | -8.615850e-47 |
| Msa0042510 | Msa0301250 | 0.882665 | 8.608487e-71 | -8.615850e-47 |
| Msa0042510 | Msa0313060 | 0.861612 | 9.077205e-64 | -8.615850e-47 |
| Msa0042510 | Msa0315430 | 0.812477 | 4.157264e-51 | -8.615850e-47 |
| Msa0042510 | Msa0371490 | 0.811584 | 6.507821e-51 | -8.615850e-47 |
| Msa0042510 | Msa0373350 | 0.859763 | 3.301893e-63 | -8.615850e-47 |
| Msa0042510 | Msa0376850 | 0.860723 | 1.693047e-63 | -8.615850e-47 |
| Msa0042510 | Msa0377370 | 0.804840 | 1.781074e-49 | -8.615850e-47 |
| Msa0042510 | Msa0377610 | 0.847715 | 9.701953e-60 | -8.615850e-47 |
| Msa0042510 | Msa0382670 | 0.841996 | 3.385348e-58 | -8.615850e-47 |
| Msa0042510 | Msa0387290 | 0.862908 | 3.630649e-64 | -8.615850e-47 |
| Msa0042510 | Msa0388520 | 0.868795 | 5.006783e-66 | -8.615850e-47 |
| Msa0042510 | Msa0388540 | 0.809474 | 1.858438e-50 | -8.615850e-47 |
| Msa0042510 | Msa0416470 | 0.850463 | 1.670371e-60 | -8.615850e-47 |
| Msa0042510 | Msa0421920 | 0.830481 | 2.866663e-55 | -8.615850e-47 |
| Msa0042510 | Msa0426090 | 0.818811 | 1.613331e-52 | -8.615850e-47 |
| Msa0042510 | Msa0426820 | 0.866879 | 2.064006e-65 | -8.615850e-47 |
| Msa0042510 | Msa0426940 | 0.800729 | 1.257343e-48 | -8.615850e-47 |
| Msa0042510 | Msa0467740 | 0.874134 | 8.563981e-68 | -8.615850e-47 |
| Msa0042510 | Msa0472480 | 0.821512 | 3.881188e-53 | -8.615850e-47 |
| Msa0042510 | Msa0477670 | 0.857288 | 1.807181e-62 | -8.615850e-47 |
| Msa0042510 | Msa0482560 | 0.826679 | 2.377080e-54 | -8.615850e-47 |
| Msa0042510 | Msa0485220 | 0.861987 | 6.968141e-64 | -8.615850e-47 |
| Msa0042510 | Msa0511760 | 0.874656 | 5.693479e-68 | -8.615850e-47 |
| Msa0042510 | Msa0514130 | 0.866280 | 3.200822e-65 | -8.615850e-47 |
| Msa0042510 | Msa0516830 | 0.860072 | 2.665182e-63 | -8.615850e-47 |
| Msa0042510 | Msa0547920 | 0.823249 | 1.533283e-53 | -8.615850e-47 |
| Msa0042510 | Msa0573550 | 0.856003 | 4.316286e-62 | -8.615850e-47 |
| Msa0042510 | Msa0574780 | 0.885803 | 5.935442e-72 | -8.615850e-47 |
| Msa0042510 | Msa0578010 | 0.873447 | 1.459870e-67 | -8.615850e-47 |
| Msa0042510 | Msa0597240 | 0.843450 | 1.391316e-58 | -8.615850e-47 |
| Msa0042510 | Msa0602900 | 0.840261 | 9.675123e-58 | -8.615850e-47 |
| Msa0042510 | Msa0610380 | 0.805895 | 1.070289e-49 | -8.615850e-47 |
| Msa0042510 | Msa0619230 | 0.900160 | 9.667652e-78 | -8.615850e-47 |
| Msa0042510 | Msa0621190 | 0.919917 | 2.468035e-87 | -8.615850e-47 |
| Msa0042510 | Msa0643960 | 0.827896 | 1.214079e-54 | -8.615850e-47 |
| Msa0042510 | Msa0650910 | 0.802449 | 5.580516e-49 | -8.615850e-47 |
| Msa0042510 | Msa0656450 | 0.902420 | 9.876154e-79 | -8.615850e-47 |
| Msa0042510 | Msa0691760 | 0.835486 | 1.631801e-56 | -8.615850e-47 |
| Msa0042510 | Msa0694400 | 0.832908 | 7.227177e-56 | -8.615850e-47 |
| Msa0042510 | Msa0700370 | 0.908202 | 2.211870e-81 | -8.615850e-47 |
| Msa0042510 | Msa0709380 | 0.810638 | 1.043628e-50 | -8.615850e-47 |
| Msa0042510 | Msa0752240 | 0.828881 | 7.024116e-55 | -8.615850e-47 |
| Msa0042510 | Msa0758420 | 0.813112 | 3.018698e-51 | -8.615850e-47 |
| Msa0042510 | Msa0790450 | 0.826022 | 3.406550e-54 | -8.615850e-47 |
| Msa0042510 | Msa0880050 | 0.814221 | 1.720236e-51 | -8.615850e-47 |
| Msa0042510 | Msa0929700 | 0.840057 | 1.093736e-57 | -8.615850e-47 |
| Msa0042510 | Msa0930100 | 0.800938 | 1.139640e-48 | -8.615850e-47 |
| Msa0042510 | Msa0930360 | 0.901028 | 4.051824e-78 | -8.615850e-47 |
| Msa0042510 | Msa0930790 | 0.856882 | 2.382420e-62 | -8.615850e-47 |
| Msa0042510 | Msa0930890 | 0.832268 | 1.041483e-55 | -8.615850e-47 |
| Msa0042510 | Msa0987570 | 0.860681 | 1.742918e-63 | -8.615850e-47 |
| Msa0042510 | Msa0998890 | 0.892981 | 9.605756e-75 | -8.615850e-47 |
| Msa0042510 | Msa1035900 | 0.800392 | 1.472329e-48 | -8.615850e-47 |
| Msa0042510 | Msa1037030 | 0.802196 | 6.292194e-49 | -8.615850e-47 |
| Msa0042510 | Msa1041830 | 0.810172 | 1.315389e-50 | -8.615850e-47 |
| Msa0042510 | Msa1082050 | 0.853147 | 2.895130e-61 | -8.615850e-47 |
| Msa0042510 | Msa1124980 | 0.840298 | 9.457712e-58 | -8.615850e-47 |
| Msa0042510 | Msa1126690 | 0.829941 | 3.884236e-55 | -8.615850e-47 |
| Msa0042510 | Msa1144630 | 0.882762 | 7.934571e-71 | -8.615850e-47 |
| Msa0042510 | Msa1165700 | 0.900636 | 6.005574e-78 | -8.615850e-47 |
| Msa0042510 | Msa1167360 | 0.823598 | 1.270779e-53 | -8.615850e-47 |
| Msa0042510 | Msa1180000 | 0.814408 | 1.564584e-51 | -8.615850e-47 |
| Msa0042510 | Msa1189540 | 0.823094 | 1.666394e-53 | -8.615850e-47 |
| Msa0042510 | Msa1209560 | -0.810026 | 1.414362e-50 | -8.615850e-47 |
| Msa0042510 | Msa1213850 | 0.850033 | 2.205856e-60 | -8.615850e-47 |
| Msa0042510 | Msa1227350 | 0.849602 | 2.910467e-60 | -8.615850e-47 |
| Msa0042510 | Msa1235950 | 0.842345 | 2.736935e-58 | -8.615850e-47 |
| Msa0042510 | Msa1235980 | 0.849579 | 2.953169e-60 | -8.615850e-47 |
| Msa0042510 | Msa1237040 | 0.845343 | 4.309635e-59 | -8.615850e-47 |
| Msa0042510 | Msa1246040 | -0.807051 | 6.104731e-50 | -8.615850e-47 |
| Msa0042510 | Msa1270710 | 0.804401 | 2.198546e-49 | -8.615850e-47 |
| Msa0042510 | Msa1284800 | 0.879173 | 1.546897e-69 | -8.615850e-47 |
| Msa0042510 | Msa1298910 | -0.802510 | 5.421519e-49 | -8.615850e-47 |
| Msa0042510 | Msa1317390 | 0.866057 | 3.766017e-65 | -8.615850e-47 |
| Msa0042510 | Msa1330530 | -0.804277 | 2.333096e-49 | -8.615850e-47 |
| Msa0042510 | Msa1351020 | 0.843099 | 1.725105e-58 | -8.615850e-47 |
| Msa0042510 | Msa1363930 | 0.884578 | 1.700877e-71 | -8.615850e-47 |
| Msa0042510 | Msa1366540 | 0.897509 | 1.312243e-76 | -8.615850e-47 |
| Msa0042510 | Msa1385480 | 0.816726 | 4.765667e-52 | -8.615850e-47 |
| Msa0042510 | Msa1387750 | 0.932910 | 4.182794e-95 | -8.615850e-47 |
| Msa0042510 | Msa1390760 | 0.901284 | 3.131194e-78 | -8.615850e-47 |
| Msa0042510 | Msa1403520 | 0.844562 | 7.002730e-59 | -8.615850e-47 |
| Msa0042510 | Msa1407550 | 0.894154 | 3.219733e-75 | -8.615850e-47 |
| Msa0042510 | Msa1413570 | 0.897730 | 1.059341e-76 | -8.615850e-47 |
| Msa0042510 | Msa1423050 | 0.812287 | 4.574524e-51 | -8.615850e-47 |
| Msa0042510 | Msa1432310 | 0.839926 | 1.183211e-57 | -8.615850e-47 |
| Msa0042510 | Msa1446510 | 0.844805 | 6.022630e-59 | -8.615850e-47 |
| Msa0042510 | Msa1450560 | 0.829884 | 4.009751e-55 | -8.615850e-47 |
| Msa0042510 | Msa1453530 | 0.856222 | 3.723341e-62 | -8.615850e-47 |
| Msa0042510 | Msa1463510 | 0.878328 | 3.070405e-69 | -8.615850e-47 |
| Msa0042510 | Msa1465700 | 0.848452 | 6.074427e-60 | -8.615850e-47 |
| Msa0042510 | Msa1465890 | 0.870000 | 2.030123e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042510 | MtrunA17_Chr1g0155011 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 2.31e-152 | 420 |
| Msa0042510 | MtrunA17_Chr7g0271401 | 97.585 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 7.32e-150 | 414 |
| Msa0042510 | MtrunA17_Chr5g0409231 | 97.101 | 207 | 6 | 0 | 1 | 207 | 1 | 207 | 2.85e-149 | 412 |
| Msa0042510 | MtrunA17_Chr8g0369561 | 90.196 | 51 | 5 | 0 | 134 | 184 | 7 | 57 | 2.82e-27 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042510 | AT3G49010.3 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0042510 | AT3G49010.6 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0042510 | AT3G49010.1 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0042510 | AT3G49010.2 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0042510 | AT3G49010.7 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0042510 | AT3G49010.4 | 86.911 | 191 | 23 | 1 | 2 | 192 | 1 | 189 | 1.57e-123 | 348 |
| Msa0042510 | AT5G23900.1 | 84.946 | 186 | 28 | 0 | 2 | 187 | 1 | 186 | 1.19e-118 | 335 |
| Msa0042510 | AT3G48960.1 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 9.33e-109 | 310 |
| Msa0042510 | AT3G49010.5 | 62.304 | 191 | 19 | 1 | 2 | 192 | 1 | 138 | 3.84e-79 | 233 |
Find 94 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTAATCACCATAAATT+TGG | 0.073611 | 1_1:-73397105 | Msa0042510:three_prime_UTR |
| TTCTAAAGAACCCAAATTTA+TGG | 0.096605 | 1_1:+73397094 | None:intergenic |
| TGTTCATAAGAAAACTAATT+TGG | 0.216115 | 1_1:+73397237 | None:intergenic |
| TGATTACTGGGCTTAGATAA+TGG | 0.279749 | 1_1:+73399534 | None:intergenic |
| GGGTTTGTTGTAGAATTTAA+AGG | 0.293812 | 1_1:+73399486 | None:intergenic |
| CAAGTGAAGGAATGGCAATT+AGG | 0.307836 | 1_1:+73399465 | None:intergenic |
| AAATCTTCACTGCCTTCTTT+TGG | 0.308723 | 1_1:+73398842 | None:intergenic |
| TTGGTCTTGCGTGCGCGCCT+TGG | 0.314350 | 1_1:+73397676 | None:intergenic |
| TCGCCGCAAGAACCGTTCTT+TGG | 0.319042 | 1_1:-73397758 | Msa0042510:CDS |
| TGCTTACGGAAGTGTTCATT+TGG | 0.319315 | 1_1:+73399303 | None:intergenic |
| ATGGTTGGAGCAAGCTTCTT+GGG | 0.323930 | 1_1:+73397799 | None:intergenic |
| GCGCACCAACAAGCGTCATT+TGG | 0.336081 | 1_1:-73397370 | Msa0042510:CDS |
| ACTTTAATCACCATAAATTT+GGG | 0.346852 | 1_1:-73397104 | Msa0042510:three_prime_UTR |
| GATTACTGGGCTTAGATAAT+GGG | 0.348601 | 1_1:+73399535 | None:intergenic |
| GCCAACTGTTGAACTTGTTA+AGG | 0.359245 | 1_1:-73397442 | Msa0042510:CDS |
| GTACTGTCACTTAAGTTTGT+TGG | 0.359666 | 1_1:-73397168 | Msa0042510:three_prime_UTR |
| TGGTCTTGCGTGCGCGCCTT+GGG | 0.368380 | 1_1:+73397677 | None:intergenic |
| AAGTGAAGGAATGGCAATTA+GGG | 0.375512 | 1_1:+73399466 | None:intergenic |
| AATGGTTGGAGCAAGCTTCT+TGG | 0.375579 | 1_1:+73397798 | None:intergenic |
| CAAAGGTCCAGCGGTTGGCC+GGG | 0.376507 | 1_1:+73398816 | None:intergenic |
| CGCACCAACAAGCGTCATTT+GGG | 0.378501 | 1_1:-73397369 | Msa0042510:CDS |
| TTCAAGAGAAAATCCTTTCC+CGG | 0.387347 | 1_1:+73398744 | None:intergenic |
| CGTCTCCTGGTCTTCCTAGC+TGG | 0.389013 | 1_1:+73399246 | None:intergenic |
| TCATGAAACAGCTATATGAT+TGG | 0.405835 | 1_1:+73397270 | None:intergenic |
| GCAGTTTGACCGTGAACAAT+TGG | 0.409288 | 1_1:+73398790 | None:intergenic |
| TCAAAGGTCCAGCGGTTGGC+CGG | 0.411486 | 1_1:+73398815 | None:intergenic |
| AAAGGTCCAGCGGTTGGCCG+GGG | 0.418246 | 1_1:+73398817 | None:intergenic |
| CATAGTTCTGCCAATGCTTA+CGG | 0.420637 | 1_1:+73399289 | None:intergenic |
| AGCAAGCTTCTTGGGGATAC+CGG | 0.426394 | 1_1:+73397807 | None:intergenic |
| ACGTGGTGGTAAAACTATTA+CGG | 0.434728 | 1_1:+73397040 | None:intergenic |
| GAGGGCTGCTGAGGCAGAAA+AGG | 0.445694 | 1_1:-73397334 | Msa0042510:CDS |
| GCTTACGGAAGTGTTCATTT+GGG | 0.453054 | 1_1:+73399304 | None:intergenic |
| GGCCAACCGCTGGACCTTTG+AGG | 0.459880 | 1_1:-73398813 | Msa0042510:CDS |
| CGCAAGAACCGTTCTTTGGA+GGG | 0.473099 | 1_1:-73397754 | Msa0042510:CDS |
| AGCACCCAAATGACGCTTGT+TGG | 0.478609 | 1_1:+73397365 | None:intergenic |
| ATTAAAGTAAGCAATTGAAC+AGG | 0.478756 | 1_1:+73397119 | None:intergenic |
| CCTTGGGAAAACAACCAACT+TGG | 0.479943 | 1_1:+73397693 | None:intergenic |
| TAGGAAGACCAGGAGACGCT+TGG | 0.484150 | 1_1:-73399241 | Msa0042510:CDS |
| TTATAGGTATCATATTATAG+AGG | 0.485049 | 1_1:-73399558 | Msa0042510:five_prime_UTR |
| CCTTTGAGGCCAATTGTTCA+CGG | 0.485229 | 1_1:-73398799 | Msa0042510:CDS |
| GGAATCCATGATTTAAGACT+TGG | 0.487015 | 1_1:+73397212 | None:intergenic |
| ACAAGCGTCATTTGGGTGCT+AGG | 0.489744 | 1_1:-73397362 | Msa0042510:CDS |
| GGTACCTGGGAGAGAGGTGG+CGG | 0.493912 | 1_1:+73399442 | None:intergenic |
| CCGCAAGAACCGTTCTTTGG+AGG | 0.494965 | 1_1:-73397755 | Msa0042510:CDS |
| AGGAAGACCAGGAGACGCTT+GGG | 0.497890 | 1_1:-73399240 | Msa0042510:intron |
| GTAATTACCCAAGCGTCTCC+TGG | 0.500114 | 1_1:+73399233 | None:intergenic |
| GACGCTTGTTGGTGCGCTCA+AGG | 0.500487 | 1_1:+73397376 | None:intergenic |
| TAAGGTTACAGATGAAATGA+AGG | 0.502882 | 1_1:-73397424 | Msa0042510:CDS |
| AAGAAGCTTGCTCCAACCAT+TGG | 0.507390 | 1_1:-73397796 | Msa0042510:CDS |
| CAATCGGCAAGTATGATCCT+TGG | 0.510540 | 1_1:+73397475 | None:intergenic |
| ACATGCCAAGTCTTAAATCA+TGG | 0.510697 | 1_1:-73397217 | Msa0042510:three_prime_UTR |
| GTTGGCTTCTCCCTCACAAT+CGG | 0.511949 | 1_1:+73397459 | None:intergenic |
| GTGGCATTAGCAAGTTCCTC+AGG | 0.518954 | 1_1:+73397504 | None:intergenic |
| AAGAACGGTTCTTGCGGCGA+TGG | 0.520566 | 1_1:+73397761 | None:intergenic |
| ATGAAACTTCGTGCCGGGAA+AGG | 0.523982 | 1_1:-73398757 | Msa0042510:CDS |
| ACCTTAACAAGTTCAACAGT+TGG | 0.524264 | 1_1:+73397441 | None:intergenic |
| CCGTGAACAATTGGCCTCAA+AGG | 0.527396 | 1_1:+73398799 | None:intergenic |
| TTATAAACTCGGACTTCTCA+AGG | 0.536902 | 1_1:+73397294 | None:intergenic |
| ATTTGGGTGCTAGGCTCAAG+AGG | 0.544127 | 1_1:-73397353 | Msa0042510:CDS |
| ATCAACCAGCTAGGAAGACC+AGG | 0.552070 | 1_1:-73399251 | Msa0042510:CDS |
| GGCCTCAAAGGTCCAGCGGT+TGG | 0.553506 | 1_1:+73398811 | None:intergenic |
| GATCATACTTGCCGATTGTG+AGG | 0.555446 | 1_1:-73397470 | Msa0042510:CDS |
| CTTGCCGCCACCTCTCTCCC+AGG | 0.559256 | 1_1:-73399446 | Msa0042510:intron |
| AGAGAGGTGGCGGCAAGTGA+AGG | 0.560745 | 1_1:+73399452 | None:intergenic |
| ACAACATGAAACTTCGTGCC+GGG | 0.563845 | 1_1:-73398762 | Msa0042510:CDS |
| TAGGCTCAAGAGGGCTGCTG+AGG | 0.568695 | 1_1:-73397343 | Msa0042510:CDS |
| AAGGTCCAGCGGTTGGCCGG+GGG | 0.569118 | 1_1:+73398818 | None:intergenic |
| TACAACATGAAACTTCGTGC+CGG | 0.570733 | 1_1:-73398763 | Msa0042510:CDS |
| GAAAACATACAAGGCCAAGT+TGG | 0.571763 | 1_1:-73397707 | Msa0042510:CDS |
| ATATGATTGGATTATAAACT+CGG | 0.572859 | 1_1:+73397283 | None:intergenic |
| ATGAACACTTCCGTAAGCAT+TGG | 0.574424 | 1_1:-73399299 | Msa0042510:CDS |
| TCAACAGAAATGCCAATGGT+TGG | 0.577031 | 1_1:+73397784 | None:intergenic |
| GGTGGCGGCAAGTGAAGGAA+TGG | 0.579827 | 1_1:+73399457 | None:intergenic |
| CCTCCAAAGAACGGTTCTTG+CGG | 0.586577 | 1_1:+73397755 | None:intergenic |
| CATGGTTCAATCAACCAGCT+AGG | 0.591929 | 1_1:-73399260 | Msa0042510:CDS |
| AACGGCGGTACCTGGGAGAG+AGG | 0.594400 | 1_1:+73399436 | None:intergenic |
| CTTGCAGACCCTCCAAAGAA+CGG | 0.595271 | 1_1:+73397746 | None:intergenic |
| AACATTGTTGTGCTTCACCA+TGG | 0.595442 | 1_1:+73399329 | None:intergenic |
| ACAGAATAATAGTAAAGCAA+AGG | 0.597306 | 1_1:+73397191 | None:intergenic |
| ATCATACTTGCCGATTGTGA+GGG | 0.601270 | 1_1:-73397469 | Msa0042510:CDS |
| GGCGGTACCTGGGAGAGAGG+TGG | 0.603024 | 1_1:+73399439 | None:intergenic |
| TGGTTGGAGCAAGCTTCTTG+GGG | 0.611973 | 1_1:+73397800 | None:intergenic |
| GCTAATGCCACACAAGTCCA+AGG | 0.623000 | 1_1:-73397492 | Msa0042510:CDS |
| AAGGCGCGCACGCAAGACCA+AGG | 0.626116 | 1_1:-73397674 | Msa0042510:intron |
| GTCTGCAAGCTAATGTGCAG+AGG | 0.628654 | 1_1:-73397732 | Msa0042510:CDS |
| TTTGGGTGCTAGGCTCAAGA+GGG | 0.631845 | 1_1:-73397352 | Msa0042510:CDS |
| GGCAGAACTATGTCAAAACA+TGG | 0.632555 | 1_1:-73399278 | Msa0042510:CDS |
| GGCTGGGGACTCTACACCTG+AGG | 0.639995 | 1_1:-73397520 | Msa0042510:CDS |
| ATTATCAAATTAATACGTGG+TGG | 0.656768 | 1_1:+73397026 | None:intergenic |
| GCAGAGGCTGAAAACATACA+AGG | 0.656774 | 1_1:-73397716 | Msa0042510:CDS |
| ATGGTCAACAGAAATGCCAA+TGG | 0.663073 | 1_1:+73397780 | None:intergenic |
| AATTGGCCTCAAAGGTCCAG+CGG | 0.684475 | 1_1:+73398807 | None:intergenic |
| GTATGATCCTTGGACTTGTG+TGG | 0.704331 | 1_1:+73397485 | None:intergenic |
| TATATTATCAAATTAATACG+TGG | 0.735354 | 1_1:+73397023 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAGTTGTAAAAATAT+AGG | + | chr1_1:73397410-73397429 | None:intergenic | 10.0% |
| !!! | AAAAGAAAGTAGTATTTTAT+AGG | - | chr1_1:73397044-73397063 | Msa0042510:three_prime_UTR | 15.0% |
| !! | AAGTTATAATATGTAGTTTA+TGG | + | chr1_1:73398756-73398775 | None:intergenic | 15.0% |
| !! | TTATAGGTATCATATTATAG+AGG | - | chr1_1:73397060-73397079 | Msa0042510:three_prime_UTR | 20.0% |
| !! | ATATGTTACTCTTAAATGAT+TGG | + | chr1_1:73398321-73398340 | None:intergenic | 20.0% |
| !! | TAACATATAGTTCTTGTAAT+GGG | - | chr1_1:73398333-73398352 | Msa0042510:intron | 20.0% |
| !!! | TAATAATGGGTTTATACATA+TGG | - | chr1_1:73398596-73398615 | Msa0042510:intron | 20.0% |
| !! | ATAAACTAAAATCATCATTG+AGG | + | chr1_1:73398981-73399000 | None:intergenic | 20.0% |
| !!! | TTGAAATAGGAAGTATTAAT+CGG | - | chr1_1:73399043-73399062 | Msa0042510:intron | 20.0% |
| !!! | AATTATTTTTATTTGTCTGC+AGG | - | chr1_1:73399077-73399096 | Msa0042510:intron | 20.0% |
| !! | ATATGATTGGATTATAAACT+CGG | + | chr1_1:73399338-73399357 | None:intergenic | 20.0% |
| !! | TGTTCATAAGAAAACTAATT+TGG | + | chr1_1:73399384-73399403 | None:intergenic | 20.0% |
| !! | TACTTTAATCACCATAAATT+TGG | - | chr1_1:73399513-73399532 | Msa0042510:five_prime_UTR | 20.0% |
| !! | ACTTTAATCACCATAAATTT+GGG | - | chr1_1:73399514-73399533 | Msa0042510:five_prime_UTR | 20.0% |
| !! | ATGCAGTTTTTATGATTACT+GGG | + | chr1_1:73397099-73397118 | None:intergenic | 25.0% |
| !! | AATGCAGTTTTTATGATTAC+TGG | + | chr1_1:73397100-73397119 | None:intergenic | 25.0% |
| !! | TTTTACGCTAAAGACTAAAT+TGG | - | chr1_1:73398020-73398039 | Msa0042510:intron | 25.0% |
| ! | TATTAGATAGAACTAATGCA+GGG | + | chr1_1:73398068-73398087 | None:intergenic | 25.0% |
| ! | ATATTAGATAGAACTAATGC+AGG | + | chr1_1:73398069-73398088 | None:intergenic | 25.0% |
| ! | ATCTAATATAATCATTGTCG+TGG | - | chr1_1:73398080-73398099 | Msa0042510:intron | 25.0% |
| !! | TCATATGACTAATTGATTTC+TGG | - | chr1_1:73398164-73398183 | Msa0042510:intron | 25.0% |
| !! | CATATGACTAATTGATTTCT+GGG | - | chr1_1:73398165-73398184 | Msa0042510:intron | 25.0% |
| !! | CTACAGTTTAATCTATTTTC+GGG | + | chr1_1:73398229-73398248 | None:intergenic | 25.0% |
| !! | CCTACAGTTTAATCTATTTT+CGG | + | chr1_1:73398230-73398249 | None:intergenic | 25.0% |
| ! | TACAGAATTGAAGACTATAT+AGG | + | chr1_1:73398266-73398285 | None:intergenic | 25.0% |
| ! | GTAACATATAGTTCTTGTAA+TGG | - | chr1_1:73398332-73398351 | Msa0042510:intron | 25.0% |
| !! | TAATGATCGGTTTATACATA+TGG | - | chr1_1:73398543-73398562 | Msa0042510:intron | 25.0% |
| ! | ACAGAATAATAGTAAAGCAA+AGG | + | chr1_1:73399430-73399449 | None:intergenic | 25.0% |
| ! | ATTAAAGTAAGCAATTGAAC+AGG | + | chr1_1:73399502-73399521 | None:intergenic | 25.0% |
| !! | TTCTAAAGAACCCAAATTTA+TGG | + | chr1_1:73399527-73399546 | None:intergenic | 25.0% |
| !! | GGGTTTGTTGTAGAATTTAA+AGG | + | chr1_1:73397135-73397154 | None:intergenic | 30.0% |
| ACCAGATCAGTTCAATATTT+AGG | - | chr1_1:73397208-73397227 | Msa0042510:three_prime_UTR | 30.0% | |
| CCAGATCAGTTCAATATTTA+GGG | - | chr1_1:73397209-73397228 | Msa0042510:three_prime_UTR | 30.0% | |
| !!! | AAAGGCTTGTTGTGATTTTT+AGG | - | chr1_1:73397262-73397281 | Msa0042510:three_prime_UTR | 30.0% |
| CAAACATGTCAAAAAACATG+AGG | + | chr1_1:73397483-73397502 | None:intergenic | 30.0% | |
| !!! | CTCATGTTTTTTGACATGTT+TGG | - | chr1_1:73397481-73397500 | Msa0042510:CDS | 30.0% |
| CAAACAAACAATTTAAGCCA+CGG | + | chr1_1:73397573-73397592 | None:intergenic | 30.0% | |
| ! | ATTTTCTCTTGAAGAGTTGA+AGG | - | chr1_1:73397884-73397903 | Msa0042510:intron | 30.0% |
| !! | TCTGTGTAGATGTTACTTTA+TGG | - | chr1_1:73397944-73397963 | Msa0042510:intron | 30.0% |
| !! | CTGTGTAGATGTTACTTTAT+GGG | - | chr1_1:73397945-73397964 | Msa0042510:intron | 30.0% |
| CCGAAAATAGATTAAACTGT+AGG | - | chr1_1:73398227-73398246 | Msa0042510:intron | 30.0% | |
| TACTCTCAAGTTACTAAACA+TGG | + | chr1_1:73398297-73398316 | None:intergenic | 30.0% | |
| TGCATATGACACTTAAATGA+TGG | - | chr1_1:73398409-73398428 | Msa0042510:intron | 30.0% | |
| GCATATGACACTTAAATGAT+GGG | - | chr1_1:73398410-73398429 | Msa0042510:intron | 30.0% | |
| !! | AAATGATGGGTTTATACACA+TGG | - | chr1_1:73398423-73398442 | Msa0042510:intron | 30.0% |
| !! | AAACGATGGGTTTTTACATA+TGG | - | chr1_1:73398477-73398496 | Msa0042510:intron | 30.0% |
| !! | TGGATGATGGTTTTTACATA+TGG | - | chr1_1:73398563-73398582 | Msa0042510:intron | 30.0% |
| ! | ATGGCTCTACACTTTAATAA+TGG | - | chr1_1:73398582-73398601 | Msa0042510:intron | 30.0% |
| ! | TGGCTCTACACTTTAATAAT+GGG | - | chr1_1:73398583-73398602 | Msa0042510:intron | 30.0% |
| AATAGCCATATGCAAAAACT+TGG | + | chr1_1:73398629-73398648 | None:intergenic | 30.0% | |
| ! | CTAGAGTTCAACTTTTATTC+AGG | + | chr1_1:73398698-73398717 | None:intergenic | 30.0% |
| TAGTTGAAGACTATAAAGTC+TGG | + | chr1_1:73398728-73398747 | None:intergenic | 30.0% | |
| CCTGTCATAAAAACAAAAGT+AGG | + | chr1_1:73398788-73398807 | None:intergenic | 30.0% | |
| !!! | CCTACTTTTGTTTTTATGAC+AGG | - | chr1_1:73398785-73398804 | Msa0042510:CDS | 30.0% |
| TTGAGGTTCTTATATTACCT+TGG | + | chr1_1:73398964-73398983 | None:intergenic | 30.0% | |
| TAAGGTTACAGATGAAATGA+AGG | - | chr1_1:73399194-73399213 | Msa0042510:intron | 30.0% | |
| TCATGAAACAGCTATATGAT+TGG | + | chr1_1:73399351-73399370 | None:intergenic | 30.0% | |
| GATTACTGGGCTTAGATAAT+GGG | + | chr1_1:73397086-73397105 | None:intergenic | 35.0% | |
| TGATTACTGGGCTTAGATAA+TGG | + | chr1_1:73397087-73397106 | None:intergenic | 35.0% | |
| AAGTGAAGGAATGGCAATTA+GGG | + | chr1_1:73397155-73397174 | None:intergenic | 35.0% | |
| TTGAACTGATCTGGTGAAAA+CGG | + | chr1_1:73397203-73397222 | None:intergenic | 35.0% | |
| CCCTAAATATTGAACTGATC+TGG | + | chr1_1:73397212-73397231 | None:intergenic | 35.0% | |
| !! | ACTATTCTTCGCTGATTCAA+AGG | - | chr1_1:73397244-73397263 | Msa0042510:three_prime_UTR | 35.0% |
| !!! | TGTGATTTTTAGGTAAGCCA+TGG | - | chr1_1:73397272-73397291 | Msa0042510:three_prime_UTR | 35.0% |
| !!! | TTTTTTGACATGTTTGTCCG+TGG | - | chr1_1:73397553-73397572 | Msa0042510:intron | 35.0% |
| TCTGCAGTGTCTTGAATTAT+AGG | - | chr1_1:73397633-73397652 | Msa0042510:intron | 35.0% | |
| ! | AAATCTTCACTGCCTTCTTT+TGG | + | chr1_1:73397779-73397798 | None:intergenic | 35.0% |
| TTCAAGAGAAAATCCTTTCC+CGG | + | chr1_1:73397877-73397896 | None:intergenic | 35.0% | |
| !! | AGCTTGTTGAACTTTAACTG+TGG | - | chr1_1:73397913-73397932 | Msa0042510:intron | 35.0% |
| AAACTGTAGGAAAGATCGTA+CGG | - | chr1_1:73398240-73398259 | Msa0042510:intron | 35.0% | |
| GGTTTATACACATGGATGAT+GGG | - | chr1_1:73398431-73398450 | Msa0042510:intron | 35.0% | |
| !!! | GGATGATGGGTTTTTACATA+TGG | - | chr1_1:73398444-73398463 | Msa0042510:intron | 35.0% |
| AAAACCCATCGTTTAAGTGT+CGG | + | chr1_1:73398471-73398490 | None:intergenic | 35.0% | |
| TGGCTAGACACTTTAATGAT+CGG | - | chr1_1:73398530-73398549 | Msa0042510:intron | 35.0% | |
| CGGTTTATACATATGGATGA+TGG | - | chr1_1:73398550-73398569 | Msa0042510:intron | 35.0% | |
| ! | TGACACCAAGTTTTTGCATA+TGG | - | chr1_1:73398621-73398640 | Msa0042510:intron | 35.0% |
| TTGAAGACTATAAAGTCTGG+AGG | + | chr1_1:73398725-73398744 | None:intergenic | 35.0% | |
| CAATGATGGTATCAAAGCTA+AGG | + | chr1_1:73399014-73399033 | None:intergenic | 35.0% | |
| !! | ATTTTTATTTGTCTGCAGGC+TGG | - | chr1_1:73399081-73399100 | Msa0042510:intron | 35.0% |
| !! | TTTTTATTTGTCTGCAGGCT+GGG | - | chr1_1:73399082-73399101 | Msa0042510:intron | 35.0% |
| ACCTTAACAAGTTCAACAGT+TGG | + | chr1_1:73399180-73399199 | None:intergenic | 35.0% | |
| TTATAAACTCGGACTTCTCA+AGG | + | chr1_1:73399327-73399346 | None:intergenic | 35.0% | |
| ACATGCCAAGTCTTAAATCA+TGG | - | chr1_1:73399401-73399420 | Msa0042510:intron | 35.0% | |
| ! | GGAATCCATGATTTAAGACT+TGG | + | chr1_1:73399409-73399428 | None:intergenic | 35.0% |
| ! | GTACTGTCACTTAAGTTTGT+TGG | - | chr1_1:73399450-73399469 | Msa0042510:five_prime_UTR | 35.0% |
| ACGTGGTGGTAAAACTATTA+CGG | + | chr1_1:73399581-73399600 | None:intergenic | 35.0% | |
| CAAGTGAAGGAATGGCAATT+AGG | + | chr1_1:73397156-73397175 | None:intergenic | 40.0% | |
| AACATTGTTGTGCTTCACCA+TGG | + | chr1_1:73397292-73397311 | None:intergenic | 40.0% | |
| !! | GCTTACGGAAGTGTTCATTT+GGG | + | chr1_1:73397317-73397336 | None:intergenic | 40.0% |
| !! | TGCTTACGGAAGTGTTCATT+TGG | + | chr1_1:73397318-73397337 | None:intergenic | 40.0% |
| ATGAACACTTCCGTAAGCAT+TGG | - | chr1_1:73397319-73397338 | Msa0042510:exon | 40.0% | |
| ! | CATAGTTCTGCCAATGCTTA+CGG | + | chr1_1:73397332-73397351 | None:intergenic | 40.0% |
| GGCAGAACTATGTCAAAACA+TGG | - | chr1_1:73397340-73397359 | Msa0042510:CDS | 40.0% | |
| TACAACATGAAACTTCGTGC+CGG | - | chr1_1:73397855-73397874 | Msa0042510:intron | 40.0% | |
| ATGGGCTTGTAGATTTGTGT+TGG | - | chr1_1:73397963-73397982 | Msa0042510:intron | 40.0% | |
| !! | GCAGGGATGCTTATTTTCAT+AGG | + | chr1_1:73398051-73398070 | None:intergenic | 40.0% |
| GGGTTTATACACATGGATGA+TGG | - | chr1_1:73398430-73398449 | Msa0042510:intron | 40.0% | |
| ATGGCTCAACACTTAAACGA+TGG | - | chr1_1:73398463-73398482 | Msa0042510:intron | 40.0% | |
| TGGCTCAACACTTAAACGAT+GGG | - | chr1_1:73398464-73398483 | Msa0042510:intron | 40.0% | |
| AAACCCATCGTTTAAGTGTC+GGG | + | chr1_1:73398503-73398522 | None:intergenic | 40.0% | |
| !!! | TTGTTTTTATGACAGGCTGC+CGG | - | chr1_1:73398792-73398811 | Msa0042510:CDS | 40.0% |
| TCAACAGAAATGCCAATGGT+TGG | + | chr1_1:73398837-73398856 | None:intergenic | 40.0% | |
| ATGGTCAACAGAAATGCCAA+TGG | + | chr1_1:73398841-73398860 | None:intergenic | 40.0% | |
| GAAAACATACAAGGCCAAGT+TGG | - | chr1_1:73398911-73398930 | Msa0042510:intron | 40.0% | |
| TTGATACCATCATTGCTGCT+AGG | - | chr1_1:73399019-73399038 | Msa0042510:intron | 40.0% | |
| TGATACCATCATTGCTGCTA+GGG | - | chr1_1:73399020-73399039 | Msa0042510:intron | 40.0% | |
| ATTGCTGCTAGGGTTGAAAT+AGG | - | chr1_1:73399030-73399049 | Msa0042510:intron | 40.0% | |
| !! | TTTTATTTGTCTGCAGGCTG+GGG | - | chr1_1:73399083-73399102 | Msa0042510:intron | 40.0% |
| ! | ATCATACTTGCCGATTGTGA+GGG | - | chr1_1:73399149-73399168 | Msa0042510:intron | 40.0% |
| !! | GCCAACTGTTGAACTTGTTA+AGG | - | chr1_1:73399176-73399195 | Msa0042510:intron | 40.0% |
| AACTGATCTGGTGAAAACGG+CGG | + | chr1_1:73397200-73397219 | None:intergenic | 45.0% | |
| CATGGTTCAATCAACCAGCT+AGG | - | chr1_1:73397358-73397377 | Msa0042510:CDS | 45.0% | |
| GGGCTACAAAAATCACAGCA+CGG | + | chr1_1:73397755-73397774 | None:intergenic | 45.0% | |
| ! | TTTTGTAGCCCGCCAAAAGA+AGG | - | chr1_1:73397764-73397783 | Msa0042510:CDS | 45.0% |
| ! | TCTTCACTGCCTTCTTTTGG+CGG | + | chr1_1:73397776-73397795 | None:intergenic | 45.0% |
| !! | CCTTTGAGGCCAATTGTTCA+CGG | - | chr1_1:73397819-73397838 | Msa0042510:intron | 45.0% |
| GCAGTTTGACCGTGAACAAT+TGG | + | chr1_1:73397831-73397850 | None:intergenic | 45.0% | |
| ACAACATGAAACTTCGTGCC+GGG | - | chr1_1:73397856-73397875 | Msa0042510:intron | 45.0% | |
| ATGACCCGACACTTAAACGA+TGG | - | chr1_1:73398496-73398515 | Msa0042510:intron | 45.0% | |
| TGACCCGACACTTAAACGAT+GGG | - | chr1_1:73398497-73398516 | Msa0042510:intron | 45.0% | |
| ATGGTTGGAGCAAGCTTCTT+GGG | + | chr1_1:73398822-73398841 | None:intergenic | 45.0% | |
| AATGGTTGGAGCAAGCTTCT+TGG | + | chr1_1:73398823-73398842 | None:intergenic | 45.0% | |
| ! | AAGAAGCTTGCTCCAACCAT+TGG | - | chr1_1:73398822-73398841 | Msa0042510:CDS | 45.0% |
| GCAGAGGCTGAAAACATACA+AGG | - | chr1_1:73398902-73398921 | Msa0042510:intron | 45.0% | |
| CCTTGGGAAAACAACCAACT+TGG | + | chr1_1:73398928-73398947 | None:intergenic | 45.0% | |
| !!! | CCAAGTTGGTTGTTTTCCCA+AGG | - | chr1_1:73398925-73398944 | Msa0042510:intron | 45.0% |
| TTCAACCCTAGCAGCAATGA+TGG | + | chr1_1:73399028-73399047 | None:intergenic | 45.0% | |
| GTATGATCCTTGGACTTGTG+TGG | + | chr1_1:73399136-73399155 | None:intergenic | 45.0% | |
| CAATCGGCAAGTATGATCCT+TGG | + | chr1_1:73399146-73399165 | None:intergenic | 45.0% | |
| ! | GATCATACTTGCCGATTGTG+AGG | - | chr1_1:73399148-73399167 | Msa0042510:intron | 45.0% |
| ATCAACCAGCTAGGAAGACC+AGG | - | chr1_1:73397367-73397386 | Msa0042510:CDS | 50.0% | |
| GTAATTACCCAAGCGTCTCC+TGG | + | chr1_1:73397388-73397407 | None:intergenic | 50.0% | |
| ! | CTTCACTGCCTTCTTTTGGC+GGG | + | chr1_1:73397775-73397794 | None:intergenic | 50.0% |
| ! | AGGCAGTGAAGATTTTCCCC+CGG | - | chr1_1:73397784-73397803 | Msa0042510:CDS | 50.0% |
| ! | AATTGGCCTCAAAGGTCCAG+CGG | + | chr1_1:73397814-73397833 | None:intergenic | 50.0% |
| ! | CCGTGAACAATTGGCCTCAA+AGG | + | chr1_1:73397822-73397841 | None:intergenic | 50.0% |
| ATGAAACTTCGTGCCGGGAA+AGG | - | chr1_1:73397861-73397880 | Msa0042510:intron | 50.0% | |
| AGCAAGCTTCTTGGGGATAC+CGG | + | chr1_1:73398814-73398833 | None:intergenic | 50.0% | |
| TGGTTGGAGCAAGCTTCTTG+GGG | + | chr1_1:73398821-73398840 | None:intergenic | 50.0% | |
| CCTCCAAAGAACGGTTCTTG+CGG | + | chr1_1:73398866-73398885 | None:intergenic | 50.0% | |
| CGCAAGAACCGTTCTTTGGA+GGG | - | chr1_1:73398864-73398883 | Msa0042510:intron | 50.0% | |
| CTTGCAGACCCTCCAAAGAA+CGG | + | chr1_1:73398875-73398894 | None:intergenic | 50.0% | |
| GTCTGCAAGCTAATGTGCAG+AGG | - | chr1_1:73398886-73398905 | Msa0042510:intron | 50.0% | |
| GTGGCATTAGCAAGTTCCTC+AGG | + | chr1_1:73399117-73399136 | None:intergenic | 50.0% | |
| GCTAATGCCACACAAGTCCA+AGG | - | chr1_1:73399126-73399145 | Msa0042510:intron | 50.0% | |
| ! | GTTGGCTTCTCCCTCACAAT+CGG | + | chr1_1:73399162-73399181 | None:intergenic | 50.0% |
| CGCACCAACAAGCGTCATTT+GGG | - | chr1_1:73399249-73399268 | Msa0042510:CDS | 50.0% | |
| AGCACCCAAATGACGCTTGT+TGG | + | chr1_1:73399256-73399275 | None:intergenic | 50.0% | |
| ACAAGCGTCATTTGGGTGCT+AGG | - | chr1_1:73399256-73399275 | Msa0042510:CDS | 50.0% | |
| ATTTGGGTGCTAGGCTCAAG+AGG | - | chr1_1:73399265-73399284 | Msa0042510:CDS | 50.0% | |
| TTTGGGTGCTAGGCTCAAGA+GGG | - | chr1_1:73399266-73399285 | Msa0042510:CDS | 50.0% | |
| TGGTGAAAACGGCGGTACCT+GGG | + | chr1_1:73397192-73397211 | None:intergenic | 55.0% | |
| TAGGAAGACCAGGAGACGCT+TGG | - | chr1_1:73397377-73397396 | Msa0042510:CDS | 55.0% | |
| AGGAAGACCAGGAGACGCTT+GGG | - | chr1_1:73397378-73397397 | Msa0042510:CDS | 55.0% | |
| AAGAACGGTTCTTGCGGCGA+TGG | + | chr1_1:73398860-73398879 | None:intergenic | 55.0% | |
| TCGCCGCAAGAACCGTTCTT+TGG | - | chr1_1:73398860-73398879 | Msa0042510:intron | 55.0% | |
| CCGCAAGAACCGTTCTTTGG+AGG | - | chr1_1:73398863-73398882 | Msa0042510:intron | 55.0% | |
| GCGCACCAACAAGCGTCATT+TGG | - | chr1_1:73399248-73399267 | Msa0042510:CDS | 55.0% | |
| ! | GGTGGCGGCAAGTGAAGGAA+TGG | + | chr1_1:73397164-73397183 | None:intergenic | 60.0% |
| ! | AGAGAGGTGGCGGCAAGTGA+AGG | + | chr1_1:73397169-73397188 | None:intergenic | 60.0% |
| CTGGTGAAAACGGCGGTACC+TGG | + | chr1_1:73397193-73397212 | None:intergenic | 60.0% | |
| ! | CGTCTCCTGGTCTTCCTAGC+TGG | + | chr1_1:73397375-73397394 | None:intergenic | 60.0% |
| TCAAAGGTCCAGCGGTTGGC+CGG | + | chr1_1:73397806-73397825 | None:intergenic | 60.0% | |
| ! | GACGCTTGTTGGTGCGCTCA+AGG | + | chr1_1:73399245-73399264 | None:intergenic | 60.0% |
| TAGGCTCAAGAGGGCTGCTG+AGG | - | chr1_1:73399275-73399294 | Msa0042510:CDS | 60.0% | |
| GAGGGCTGCTGAGGCAGAAA+AGG | - | chr1_1:73399284-73399303 | Msa0042510:CDS | 60.0% | |
| GGTACCTGGGAGAGAGGTGG+CGG | + | chr1_1:73397179-73397198 | None:intergenic | 65.0% | |
| AACGGCGGTACCTGGGAGAG+AGG | + | chr1_1:73397185-73397204 | None:intergenic | 65.0% | |
| ! | ATTTTCCCCCGGCCAACCGC+TGG | - | chr1_1:73397795-73397814 | Msa0042510:CDS | 65.0% |
| ! | AAAGGTCCAGCGGTTGGCCG+GGG | + | chr1_1:73397804-73397823 | None:intergenic | 65.0% |
| ! | CAAAGGTCCAGCGGTTGGCC+GGG | + | chr1_1:73397805-73397824 | None:intergenic | 65.0% |
| GGCCAACCGCTGGACCTTTG+AGG | - | chr1_1:73397805-73397824 | Msa0042510:CDS | 65.0% | |
| GGCCTCAAAGGTCCAGCGGT+TGG | + | chr1_1:73397810-73397829 | None:intergenic | 65.0% | |
| ! | TGGTCTTGCGTGCGCGCCTT+GGG | + | chr1_1:73398944-73398963 | None:intergenic | 65.0% |
| !! | TTGGTCTTGCGTGCGCGCCT+TGG | + | chr1_1:73398945-73398964 | None:intergenic | 65.0% |
| AAGGCGCGCACGCAAGACCA+AGG | - | chr1_1:73398944-73398963 | Msa0042510:intron | 65.0% | |
| GGCTGGGGACTCTACACCTG+AGG | - | chr1_1:73399098-73399117 | Msa0042510:intron | 65.0% | |
| CTTGCCGCCACCTCTCTCCC+AGG | - | chr1_1:73397172-73397191 | Msa0042510:three_prime_UTR | 70.0% | |
| GGCGGTACCTGGGAGAGAGG+TGG | + | chr1_1:73397182-73397201 | None:intergenic | 70.0% | |
| ! | AAGGTCCAGCGGTTGGCCGG+GGG | + | chr1_1:73397803-73397822 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 73397031 | 73399609 | 73397031 | ID=Msa0042510;Name=Msa0042510 |
| chr1_1 | mRNA | 73397031 | 73399609 | 73397031 | ID=Msa0042510-mRNA-1;Parent=Msa0042510;Name=Msa0042510-mRNA-1;_AED=0.12;_eAED=0.12;_QI=170|1|1|1|0.75|0.6|5|289|207 |
| chr1_1 | exon | 73397031 | 73397541 | 73397031 | ID=Msa0042510-mRNA-1:exon:24619;Parent=Msa0042510-mRNA-1 |
| chr1_1 | exon | 73397675 | 73397833 | 73397675 | ID=Msa0042510-mRNA-1:exon:24618;Parent=Msa0042510-mRNA-1 |
| chr1_1 | exon | 73398735 | 73398868 | 73398735 | ID=Msa0042510-mRNA-1:exon:24617;Parent=Msa0042510-mRNA-1 |
| chr1_1 | exon | 73399241 | 73399356 | 73399241 | ID=Msa0042510-mRNA-1:exon:24616;Parent=Msa0042510-mRNA-1 |
| chr1_1 | exon | 73399447 | 73399609 | 73399447 | ID=Msa0042510-mRNA-1:exon:24615;Parent=Msa0042510-mRNA-1 |
| chr1_1 | five_prime_UTR | 73399447 | 73399609 | 73399447 | ID=Msa0042510-mRNA-1:five_prime_utr;Parent=Msa0042510-mRNA-1 |
| chr1_1 | five_prime_UTR | 73399350 | 73399356 | 73399350 | ID=Msa0042510-mRNA-1:five_prime_utr;Parent=Msa0042510-mRNA-1 |
| chr1_1 | CDS | 73399241 | 73399349 | 73399241 | ID=Msa0042510-mRNA-1:cds;Parent=Msa0042510-mRNA-1 |
| chr1_1 | CDS | 73398735 | 73398868 | 73398735 | ID=Msa0042510-mRNA-1:cds;Parent=Msa0042510-mRNA-1 |
| chr1_1 | CDS | 73397675 | 73397833 | 73397675 | ID=Msa0042510-mRNA-1:cds;Parent=Msa0042510-mRNA-1 |
| chr1_1 | CDS | 73397320 | 73397541 | 73397320 | ID=Msa0042510-mRNA-1:cds;Parent=Msa0042510-mRNA-1 |
| chr1_1 | three_prime_UTR | 73397031 | 73397319 | 73397031 | ID=Msa0042510-mRNA-1:three_prime_utr;Parent=Msa0042510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
