Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127230 | sp|P41129|RL132_BRANA | 85.437 | 206 | 30 | 0 | 2 | 207 | 1 | 206 | 2.68e-130 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127230 | B7FGS0 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 1.20e-148 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0127230 | 0.853817 | 1.859007e-61 | -8.615850e-47 |
| Msa0003330 | Msa0127230 | 0.825826 | 3.792962e-54 | -8.615850e-47 |
| Msa0026270 | Msa0127230 | 0.819288 | 1.256458e-52 | -8.615850e-47 |
| Msa0042510 | Msa0127230 | 0.992059 | 4.535867e-191 | -8.615850e-47 |
| Msa0079560 | Msa0127230 | 0.998228 | 2.505728e-259 | -8.615850e-47 |
| Msa0086160 | Msa0127230 | 0.841540 | 4.466219e-58 | -8.615850e-47 |
| Msa0116600 | Msa0127230 | 0.819747 | 9.875690e-53 | -8.615850e-47 |
| Msa0116690 | Msa0127230 | 0.805573 | 1.250340e-49 | -8.615850e-47 |
| Msa0127230 | Msa0146910 | 0.851712 | 7.425426e-61 | -8.615850e-47 |
| Msa0127230 | Msa0167860 | 0.813754 | 2.180902e-51 | -8.615850e-47 |
| Msa0127230 | Msa0168320 | 0.829171 | 5.975910e-55 | -8.615850e-47 |
| Msa0127230 | Msa0182100 | 0.827121 | 1.863769e-54 | -8.615850e-47 |
| Msa0127230 | Msa0188740 | 0.825296 | 5.065463e-54 | -8.615850e-47 |
| Msa0127230 | Msa0192300 | 0.863859 | 1.842406e-64 | -8.615850e-47 |
| Msa0127230 | Msa0219090 | 0.844485 | 7.344126e-59 | -8.615850e-47 |
| Msa0127230 | Msa0233550 | 0.846248 | 2.447026e-59 | -8.615850e-47 |
| Msa0127230 | Msa0239420 | 0.825628 | 4.225541e-54 | -8.615850e-47 |
| Msa0127230 | Msa0256350 | 0.832925 | 7.154611e-56 | -8.615850e-47 |
| Msa0127230 | Msa0270160 | 0.872066 | 4.231515e-67 | -8.615850e-47 |
| Msa0127230 | Msa0274940 | 0.804967 | 1.675313e-49 | -8.615850e-47 |
| Msa0127230 | Msa0301250 | 0.870076 | 1.917842e-66 | -8.615850e-47 |
| Msa0127230 | Msa0313060 | 0.850932 | 1.233170e-60 | -8.615850e-47 |
| Msa0127230 | Msa0315430 | 0.803517 | 3.356728e-49 | -8.615850e-47 |
| Msa0127230 | Msa0371490 | 0.801374 | 9.281797e-49 | -8.615850e-47 |
| Msa0127230 | Msa0373350 | 0.882464 | 1.019512e-70 | -8.615850e-47 |
| Msa0127230 | Msa0376850 | 0.842657 | 2.261528e-58 | -8.615850e-47 |
| Msa0127230 | Msa0377370 | 0.803040 | 4.214520e-49 | -8.615850e-47 |
| Msa0127230 | Msa0377610 | 0.848048 | 7.856387e-60 | -8.615850e-47 |
| Msa0127230 | Msa0382670 | 0.814030 | 1.896018e-51 | -8.615850e-47 |
| Msa0127230 | Msa0383240 | 0.811552 | 6.611187e-51 | -8.615850e-47 |
| Msa0127230 | Msa0387290 | 0.857781 | 1.291873e-62 | -8.615850e-47 |
| Msa0127230 | Msa0388520 | 0.870689 | 1.206921e-66 | -8.615850e-47 |
| Msa0127230 | Msa0388540 | 0.825670 | 4.130746e-54 | -8.615850e-47 |
| Msa0127230 | Msa0416470 | 0.833889 | 4.114550e-56 | -8.615850e-47 |
| Msa0127230 | Msa0421920 | 0.850230 | 1.941716e-60 | -8.615850e-47 |
| Msa0127230 | Msa0426820 | 0.861448 | 1.018456e-63 | -8.615850e-47 |
| Msa0127230 | Msa0433010 | 0.806767 | 7.011781e-50 | -8.615850e-47 |
| Msa0127230 | Msa0467740 | 0.879523 | 1.162662e-69 | -8.615850e-47 |
| Msa0127230 | Msa0477670 | 0.854116 | 1.524983e-61 | -8.615850e-47 |
| Msa0127230 | Msa0482560 | 0.820514 | 6.590670e-53 | -8.615850e-47 |
| Msa0127230 | Msa0485220 | 0.834371 | 3.114969e-56 | -8.615850e-47 |
| Msa0127230 | Msa0511760 | 0.867385 | 1.422526e-65 | -8.615850e-47 |
| Msa0127230 | Msa0514130 | 0.873098 | 1.912180e-67 | -8.615850e-47 |
| Msa0127230 | Msa0516830 | 0.842143 | 3.094770e-58 | -8.615850e-47 |
| Msa0127230 | Msa0524340 | 0.811597 | 6.466924e-51 | -8.615850e-47 |
| Msa0127230 | Msa0547920 | 0.821278 | 4.395742e-53 | -8.615850e-47 |
| Msa0127230 | Msa0573550 | 0.843499 | 1.349913e-58 | -8.615850e-47 |
| Msa0127230 | Msa0574780 | 0.883697 | 3.603720e-71 | -8.615850e-47 |
| Msa0127230 | Msa0578010 | 0.879750 | 9.659499e-70 | -8.615850e-47 |
| Msa0127230 | Msa0597240 | 0.816690 | 4.856382e-52 | -8.615850e-47 |
| Msa0127230 | Msa0602900 | 0.840817 | 6.917857e-58 | -8.615850e-47 |
| Msa0127230 | Msa0610380 | 0.802904 | 4.496365e-49 | -8.615850e-47 |
| Msa0127230 | Msa0619230 | 0.884311 | 2.136525e-71 | -8.615850e-47 |
| Msa0127230 | Msa0621190 | 0.906908 | 8.963899e-81 | -8.615850e-47 |
| Msa0127230 | Msa0643960 | 0.827861 | 1.238021e-54 | -8.615850e-47 |
| Msa0127230 | Msa0656450 | 0.903953 | 2.035235e-79 | -8.615850e-47 |
| Msa0127230 | Msa0691760 | 0.819349 | 1.217234e-52 | -8.615850e-47 |
| Msa0127230 | Msa0694400 | 0.825177 | 5.402739e-54 | -8.615850e-47 |
| Msa0127230 | Msa0700370 | 0.902482 | 9.272330e-79 | -8.615850e-47 |
| Msa0127230 | Msa0790450 | 0.824054 | 9.936215e-54 | -8.615850e-47 |
| Msa0127230 | Msa0826610 | 0.812390 | 4.343048e-51 | -8.615850e-47 |
| Msa0127230 | Msa0864660 | 0.810277 | 1.248860e-50 | -8.615850e-47 |
| Msa0127230 | Msa0929700 | 0.827715 | 1.342285e-54 | -8.615850e-47 |
| Msa0127230 | Msa0930100 | 0.806927 | 6.486614e-50 | -8.615850e-47 |
| Msa0127230 | Msa0930360 | 0.889815 | 1.727046e-73 | -8.615850e-47 |
| Msa0127230 | Msa0930790 | 0.843866 | 1.076296e-58 | -8.615850e-47 |
| Msa0127230 | Msa0930890 | 0.841301 | 5.163544e-58 | -8.615850e-47 |
| Msa0127230 | Msa0987570 | 0.863063 | 3.251930e-64 | -8.615850e-47 |
| Msa0127230 | Msa0998890 | 0.887299 | 1.612410e-72 | -8.615850e-47 |
| Msa0127230 | Msa1035040 | 0.805372 | 1.377860e-49 | -8.615850e-47 |
| Msa0127230 | Msa1082050 | 0.849324 | 3.479809e-60 | -8.615850e-47 |
| Msa0127230 | Msa1124980 | 0.814553 | 1.453321e-51 | -8.615850e-47 |
| Msa0127230 | Msa1126690 | 0.833262 | 5.900704e-56 | -8.615850e-47 |
| Msa0127230 | Msa1144630 | 0.876253 | 1.616946e-68 | -8.615850e-47 |
| Msa0127230 | Msa1165210 | 0.800576 | 1.350629e-48 | -8.615850e-47 |
| Msa0127230 | Msa1165700 | 0.900786 | 5.167073e-78 | -8.615850e-47 |
| Msa0127230 | Msa1189540 | 0.825449 | 4.658584e-54 | -8.615850e-47 |
| Msa0127230 | Msa1213850 | 0.821871 | 3.206013e-53 | -8.615850e-47 |
| Msa0127230 | Msa1227350 | 0.866868 | 2.081241e-65 | -8.615850e-47 |
| Msa0127230 | Msa1235950 | 0.831975 | 1.230864e-55 | -8.615850e-47 |
| Msa0127230 | Msa1235980 | 0.837334 | 5.528000e-57 | -8.615850e-47 |
| Msa0127230 | Msa1237040 | 0.829370 | 5.346236e-55 | -8.615850e-47 |
| Msa0127230 | Msa1284800 | 0.878218 | 3.354568e-69 | -8.615850e-47 |
| Msa0127230 | Msa1317390 | 0.849244 | 3.661390e-60 | -8.615850e-47 |
| Msa0127230 | Msa1351020 | 0.836961 | 6.884844e-57 | -8.615850e-47 |
| Msa0127230 | Msa1363930 | 0.877476 | 6.094177e-69 | -8.615850e-47 |
| Msa0127230 | Msa1366540 | 0.910181 | 2.497231e-82 | -8.615850e-47 |
| Msa0127230 | Msa1385480 | 0.817278 | 3.582747e-52 | -8.615850e-47 |
| Msa0127230 | Msa1387750 | 0.927021 | 2.098392e-91 | -8.615850e-47 |
| Msa0127230 | Msa1390760 | 0.886389 | 3.567737e-72 | -8.615850e-47 |
| Msa0127230 | Msa1403520 | 0.860625 | 1.813273e-63 | -8.615850e-47 |
| Msa0127230 | Msa1407550 | 0.893717 | 4.846216e-75 | -8.615850e-47 |
| Msa0127230 | Msa1413570 | 0.898708 | 4.070361e-77 | -8.615850e-47 |
| Msa0127230 | Msa1432310 | 0.832297 | 1.024430e-55 | -8.615850e-47 |
| Msa0127230 | Msa1446510 | 0.856307 | 3.514173e-62 | -8.615850e-47 |
| Msa0127230 | Msa1450560 | 0.826933 | 2.066703e-54 | -8.615850e-47 |
| Msa0127230 | Msa1453530 | 0.821588 | 3.728263e-53 | -8.615850e-47 |
| Msa0127230 | Msa1463510 | 0.866872 | 2.075480e-65 | -8.615850e-47 |
| Msa0127230 | Msa1465700 | 0.829310 | 5.530817e-55 | -8.615850e-47 |
| Msa0127230 | Msa1465890 | 0.863702 | 2.062119e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127230 | MtrunA17_Chr1g0155011 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 2.31e-152 | 420 |
| Msa0127230 | MtrunA17_Chr7g0271401 | 97.585 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 7.32e-150 | 414 |
| Msa0127230 | MtrunA17_Chr5g0409231 | 97.101 | 207 | 6 | 0 | 1 | 207 | 1 | 207 | 2.85e-149 | 412 |
| Msa0127230 | MtrunA17_Chr8g0369561 | 90.196 | 51 | 5 | 0 | 134 | 184 | 7 | 57 | 2.82e-27 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127230 | AT3G49010.3 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0127230 | AT3G49010.6 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0127230 | AT3G49010.1 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0127230 | AT3G49010.2 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0127230 | AT3G49010.7 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0127230 | AT3G49010.4 | 86.911 | 191 | 23 | 1 | 2 | 192 | 1 | 189 | 1.57e-123 | 348 |
| Msa0127230 | AT5G23900.1 | 84.946 | 186 | 28 | 0 | 2 | 187 | 1 | 186 | 1.19e-118 | 335 |
| Msa0127230 | AT3G48960.1 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 9.33e-109 | 310 |
| Msa0127230 | AT3G49010.5 | 62.304 | 191 | 19 | 1 | 2 | 192 | 1 | 138 | 3.84e-79 | 233 |
Find 94 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTAATCACCATAAATT+TGG | 0.073611 | 1_3:+56487331 | Msa0127230:three_prime_UTR |
| TTCTAAAGAACCCAAATTTA+TGG | 0.096605 | 1_3:-56487342 | None:intergenic |
| TGTTCATAAGAAAACTAATT+TGG | 0.216115 | 1_3:-56487201 | None:intergenic |
| TGATTACTGGGCTTAGATAA+TGG | 0.279749 | 1_3:-56484908 | None:intergenic |
| GGGTTTGTTGTAGAATTTAA+AGG | 0.293812 | 1_3:-56484951 | None:intergenic |
| CAAGTGAAGGAATGGCAATT+AGG | 0.307836 | 1_3:-56484972 | None:intergenic |
| AAATCTTCACTGCCTTCTTT+TGG | 0.308723 | 1_3:-56485596 | None:intergenic |
| TTGGTCTTGCGTGCGCGCCT+TGG | 0.314350 | 1_3:-56486762 | None:intergenic |
| TCGCCGCAAGAACCGTTCTT+TGG | 0.319042 | 1_3:+56486680 | Msa0127230:CDS |
| TGCTTACGGAAGTGTTCATT+TGG | 0.319315 | 1_3:-56485135 | None:intergenic |
| ATGGTTGGAGCAAGCTTCTT+GGG | 0.323930 | 1_3:-56486639 | None:intergenic |
| GCGCACCAACAAGCGTCATT+TGG | 0.336081 | 1_3:+56487068 | Msa0127230:CDS |
| ACTTTAATCACCATAAATTT+GGG | 0.346852 | 1_3:+56487332 | Msa0127230:three_prime_UTR |
| GATTACTGGGCTTAGATAAT+GGG | 0.348601 | 1_3:-56484907 | None:intergenic |
| GCCAACTGTTGAACTTGTTA+AGG | 0.359245 | 1_3:+56486996 | Msa0127230:CDS |
| GTACTGTCACTTAAGTTTGT+TGG | 0.359666 | 1_3:+56487270 | Msa0127230:three_prime_UTR |
| TGGTCTTGCGTGCGCGCCTT+GGG | 0.368380 | 1_3:-56486761 | None:intergenic |
| AAGTGAAGGAATGGCAATTA+GGG | 0.375512 | 1_3:-56484971 | None:intergenic |
| AATGGTTGGAGCAAGCTTCT+TGG | 0.375579 | 1_3:-56486640 | None:intergenic |
| CAAAGGTCCAGCGGTTGGCC+GGG | 0.376507 | 1_3:-56485622 | None:intergenic |
| CGCACCAACAAGCGTCATTT+GGG | 0.378501 | 1_3:+56487069 | Msa0127230:CDS |
| TTCAAGAGAAAATCCTTTCC+CGG | 0.387347 | 1_3:-56485694 | None:intergenic |
| CGTCTCCTGGTCTTCCTAGC+TGG | 0.389013 | 1_3:-56485192 | None:intergenic |
| TCATGAAACAGCTATATGAT+TGG | 0.405835 | 1_3:-56487168 | None:intergenic |
| GCAGTTTGACCGTGAACAAT+TGG | 0.409288 | 1_3:-56485648 | None:intergenic |
| TCAAAGGTCCAGCGGTTGGC+CGG | 0.411486 | 1_3:-56485623 | None:intergenic |
| AAAGGTCCAGCGGTTGGCCG+GGG | 0.418246 | 1_3:-56485621 | None:intergenic |
| CATAGTTCTGCCAATGCTTA+CGG | 0.420637 | 1_3:-56485149 | None:intergenic |
| AGCAAGCTTCTTGGGGATAC+CGG | 0.426394 | 1_3:-56486631 | None:intergenic |
| ACGTGGTGGTAAAACTATTA+CGG | 0.434728 | 1_3:-56487396 | None:intergenic |
| GAGGGCTGCTGAGGCAGAAA+AGG | 0.445694 | 1_3:+56487104 | Msa0127230:CDS |
| GCTTACGGAAGTGTTCATTT+GGG | 0.453054 | 1_3:-56485134 | None:intergenic |
| GGCCAACCGCTGGACCTTTG+AGG | 0.459880 | 1_3:+56485625 | Msa0127230:CDS |
| TTATAGGTATGATGTTATAG+AGG | 0.468819 | 1_3:+56484884 | Msa0127230:five_prime_UTR |
| CGCAAGAACCGTTCTTTGGA+GGG | 0.473099 | 1_3:+56486684 | Msa0127230:CDS |
| AGCACCCAAATGACGCTTGT+TGG | 0.478609 | 1_3:-56487073 | None:intergenic |
| ATTAAAGTAAGCAATTGAAC+AGG | 0.478756 | 1_3:-56487317 | None:intergenic |
| CCTTGGGAAAACAACCAACT+TGG | 0.479943 | 1_3:-56486745 | None:intergenic |
| TAGGAAGACCAGGAGACGCT+TGG | 0.484150 | 1_3:+56485197 | Msa0127230:CDS |
| CCTTTGAGGCCAATTGTTCA+CGG | 0.485229 | 1_3:+56485639 | Msa0127230:CDS |
| GGAATCCATGATTTAAGACT+TGG | 0.487015 | 1_3:-56487226 | None:intergenic |
| ACAAGCGTCATTTGGGTGCT+AGG | 0.489744 | 1_3:+56487076 | Msa0127230:CDS |
| GGTACCTGGGAGAGAGGTGG+CGG | 0.493912 | 1_3:-56484995 | None:intergenic |
| CCGCAAGAACCGTTCTTTGG+AGG | 0.494965 | 1_3:+56486683 | Msa0127230:CDS |
| AGGAAGACCAGGAGACGCTT+GGG | 0.497890 | 1_3:+56485198 | Msa0127230:CDS |
| GTAATTACCCAAGCGTCTCC+TGG | 0.500114 | 1_3:-56485205 | None:intergenic |
| GACGCTTGTTGGTGCGCTCA+AGG | 0.500487 | 1_3:-56487062 | None:intergenic |
| TAAGGTTACAGATGAAATGA+AGG | 0.502882 | 1_3:+56487014 | Msa0127230:CDS |
| AAGAAGCTTGCTCCAACCAT+TGG | 0.507390 | 1_3:+56486642 | Msa0127230:CDS |
| CAATCGGCAAGTATGATCCT+TGG | 0.510540 | 1_3:-56486963 | None:intergenic |
| ACATGCCAAGTCTTAAATCA+TGG | 0.510697 | 1_3:+56487221 | Msa0127230:three_prime_UTR |
| GTTGGCTTCTCCCTCACAAT+CGG | 0.511949 | 1_3:-56486979 | None:intergenic |
| GTGGCATTAGCAAGTTCCTC+AGG | 0.518954 | 1_3:-56486934 | None:intergenic |
| AAGAACGGTTCTTGCGGCGA+TGG | 0.520566 | 1_3:-56486677 | None:intergenic |
| ATGAAACTTCGTGCCGGGAA+AGG | 0.523982 | 1_3:+56485681 | Msa0127230:CDS |
| ACCTTAACAAGTTCAACAGT+TGG | 0.524264 | 1_3:-56486997 | None:intergenic |
| CCGTGAACAATTGGCCTCAA+AGG | 0.527396 | 1_3:-56485639 | None:intergenic |
| TTATAAACTCGGACTTCTCA+AGG | 0.536902 | 1_3:-56487144 | None:intergenic |
| ATTTGGGTGCTAGGCTCAAG+AGG | 0.544127 | 1_3:+56487085 | Msa0127230:CDS |
| ATCAACCAGCTAGGAAGACC+AGG | 0.552070 | 1_3:+56485187 | Msa0127230:CDS |
| GGCCTCAAAGGTCCAGCGGT+TGG | 0.553506 | 1_3:-56485627 | None:intergenic |
| GATCATACTTGCCGATTGTG+AGG | 0.555446 | 1_3:+56486968 | Msa0127230:CDS |
| CTTGCCGCCACCTCTCTCCC+AGG | 0.559256 | 1_3:+56484991 | Msa0127230:five_prime_UTR |
| AGAGAGGTGGCGGCAAGTGA+AGG | 0.560745 | 1_3:-56484985 | None:intergenic |
| ACAACATGAAACTTCGTGCC+GGG | 0.563845 | 1_3:+56485676 | Msa0127230:CDS |
| TAGGCTCAAGAGGGCTGCTG+AGG | 0.568695 | 1_3:+56487095 | Msa0127230:CDS |
| AAGGTCCAGCGGTTGGCCGG+GGG | 0.569118 | 1_3:-56485620 | None:intergenic |
| TACAACATGAAACTTCGTGC+CGG | 0.570733 | 1_3:+56485675 | Msa0127230:CDS |
| GAAAACATACAAGGCCAAGT+TGG | 0.571763 | 1_3:+56486731 | Msa0127230:CDS |
| ATATGATTGGATTATAAACT+CGG | 0.572859 | 1_3:-56487155 | None:intergenic |
| ATGAACACTTCCGTAAGCAT+TGG | 0.574424 | 1_3:+56485139 | Msa0127230:CDS |
| TCAACAGAAATGCCAATGGT+TGG | 0.577031 | 1_3:-56486654 | None:intergenic |
| GGTGGCGGCAAGTGAAGGAA+TGG | 0.579827 | 1_3:-56484980 | None:intergenic |
| CCTCCAAAGAACGGTTCTTG+CGG | 0.586577 | 1_3:-56486683 | None:intergenic |
| CATGGTTCAATCAACCAGCT+AGG | 0.591929 | 1_3:+56485178 | Msa0127230:CDS |
| AACGGCGGTACCTGGGAGAG+AGG | 0.594400 | 1_3:-56485001 | None:intergenic |
| CTTGCAGACCCTCCAAAGAA+CGG | 0.595271 | 1_3:-56486692 | None:intergenic |
| AACATTGTTGTGCTTCACCA+TGG | 0.595442 | 1_3:-56485109 | None:intergenic |
| ACAGAATAATAGTAAAGCAA+AGG | 0.597306 | 1_3:-56487247 | None:intergenic |
| ATCATACTTGCCGATTGTGA+GGG | 0.601270 | 1_3:+56486969 | Msa0127230:CDS |
| GGCGGTACCTGGGAGAGAGG+TGG | 0.603024 | 1_3:-56484998 | None:intergenic |
| TGGTTGGAGCAAGCTTCTTG+GGG | 0.611973 | 1_3:-56486638 | None:intergenic |
| GCTAATGCCACACAAGTCCA+AGG | 0.623000 | 1_3:+56486946 | Msa0127230:CDS |
| AAGGCGCGCACGCAAGACCA+AGG | 0.626116 | 1_3:+56486764 | Msa0127230:CDS |
| GTCTGCAAGCTAATGTGCAG+AGG | 0.628654 | 1_3:+56486706 | Msa0127230:CDS |
| TTTGGGTGCTAGGCTCAAGA+GGG | 0.631845 | 1_3:+56487086 | Msa0127230:CDS |
| GGCAGAACTATGTCAAAACA+TGG | 0.632555 | 1_3:+56485160 | Msa0127230:CDS |
| GGCTGGGGACTCTACACCTG+AGG | 0.639995 | 1_3:+56486918 | Msa0127230:intron |
| ATTATCAAATTAATACGTGG+TGG | 0.656768 | 1_3:-56487410 | None:intergenic |
| GCAGAGGCTGAAAACATACA+AGG | 0.656774 | 1_3:+56486722 | Msa0127230:CDS |
| ATGGTCAACAGAAATGCCAA+TGG | 0.663073 | 1_3:-56486658 | None:intergenic |
| AATTGGCCTCAAAGGTCCAG+CGG | 0.684475 | 1_3:-56485631 | None:intergenic |
| GTATGATCCTTGGACTTGTG+TGG | 0.704331 | 1_3:-56486953 | None:intergenic |
| TATATTATCAAATTAATACG+TGG | 0.735354 | 1_3:-56487413 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAGTTGTAAAAATAT+AGG | - | chr1_3:56485230-56485249 | None:intergenic | 10.0% |
| !!! | AAAAGAAAGTAGTATTTTAT+AGG | + | chr1_3:56484868-56484887 | Msa0127230:five_prime_UTR | 15.0% |
| !! | AAGTTATAATATGTAGTTTA+TGG | - | chr1_3:56486576-56486595 | None:intergenic | 15.0% |
| !! | ATATGTTACTCTTAAATGAT+TGG | - | chr1_3:56486141-56486160 | None:intergenic | 20.0% |
| !! | TAACATATAGTTCTTGTAAT+GGG | + | chr1_3:56486153-56486172 | Msa0127230:intron | 20.0% |
| !!! | TAATAATGGGTTTATACATA+TGG | + | chr1_3:56486416-56486435 | Msa0127230:intron | 20.0% |
| !! | ATAAACTAAAATCATCATTG+AGG | - | chr1_3:56486801-56486820 | None:intergenic | 20.0% |
| !!! | TTGAAATAGGAAGTATTAAT+CGG | + | chr1_3:56486863-56486882 | Msa0127230:intron | 20.0% |
| !!! | AATTATTTTTATTTGTCTGC+AGG | + | chr1_3:56486897-56486916 | Msa0127230:intron | 20.0% |
| !! | ATATGATTGGATTATAAACT+CGG | - | chr1_3:56487158-56487177 | None:intergenic | 20.0% |
| !! | TGTTCATAAGAAAACTAATT+TGG | - | chr1_3:56487204-56487223 | None:intergenic | 20.0% |
| !! | TACTTTAATCACCATAAATT+TGG | + | chr1_3:56487331-56487350 | Msa0127230:three_prime_UTR | 20.0% |
| !! | ACTTTAATCACCATAAATTT+GGG | + | chr1_3:56487332-56487351 | Msa0127230:three_prime_UTR | 20.0% |
| ! | TTATAGGTATGATGTTATAG+AGG | + | chr1_3:56484884-56484903 | Msa0127230:five_prime_UTR | 25.0% |
| !! | ATGCAGTTTTTATGATTACT+GGG | - | chr1_3:56484923-56484942 | None:intergenic | 25.0% |
| !! | TATGCAGTTTTTATGATTAC+TGG | - | chr1_3:56484924-56484943 | None:intergenic | 25.0% |
| !!! | AAGGCTTGTTTTTGATTTTT+AGG | + | chr1_3:56485082-56485101 | Msa0127230:intron | 25.0% |
| !! | TTTTACGCTAAAGACTAAAT+TGG | + | chr1_3:56485840-56485859 | Msa0127230:intron | 25.0% |
| ! | TATTAGATAGAACTAATGCA+GGG | - | chr1_3:56485888-56485907 | None:intergenic | 25.0% |
| ! | ATATTAGATAGAACTAATGC+AGG | - | chr1_3:56485889-56485908 | None:intergenic | 25.0% |
| ! | ATCTAATATAATCATTGTCG+TGG | + | chr1_3:56485900-56485919 | Msa0127230:intron | 25.0% |
| !! | TCATATGACTAATTGATTTC+TGG | + | chr1_3:56485984-56486003 | Msa0127230:intron | 25.0% |
| !! | CATATGACTAATTGATTTCT+GGG | + | chr1_3:56485985-56486004 | Msa0127230:intron | 25.0% |
| !! | CTACAGTTTAATCTATTTTC+GGG | - | chr1_3:56486049-56486068 | None:intergenic | 25.0% |
| !! | CCTACAGTTTAATCTATTTT+CGG | - | chr1_3:56486050-56486069 | None:intergenic | 25.0% |
| ! | TACAGAATTGAAGACTATAT+AGG | - | chr1_3:56486086-56486105 | None:intergenic | 25.0% |
| ! | GTAACATATAGTTCTTGTAA+TGG | + | chr1_3:56486152-56486171 | Msa0127230:intron | 25.0% |
| !! | TAATGATCGGTTTATACATA+TGG | + | chr1_3:56486363-56486382 | Msa0127230:intron | 25.0% |
| ! | ACAGAATAATAGTAAAGCAA+AGG | - | chr1_3:56487250-56487269 | None:intergenic | 25.0% |
| ! | ATTAAAGTAAGCAATTGAAC+AGG | - | chr1_3:56487320-56487339 | None:intergenic | 25.0% |
| !! | TTCTAAAGAACCCAAATTTA+TGG | - | chr1_3:56487345-56487364 | None:intergenic | 25.0% |
| !! | GGGTTTGTTGTAGAATTTAA+AGG | - | chr1_3:56484954-56484973 | None:intergenic | 30.0% |
| ACCAGATCAGTTCAATATTT+AGG | + | chr1_3:56485027-56485046 | Msa0127230:intron | 30.0% | |
| CCAGATCAGTTCAATATTTA+GGG | + | chr1_3:56485028-56485047 | Msa0127230:intron | 30.0% | |
| !!! | TTTGATTTTTAGGTAAGCCA+TGG | + | chr1_3:56485092-56485111 | Msa0127230:intron | 30.0% |
| CAAACATGTCAAAAAACATG+AGG | - | chr1_3:56485303-56485322 | None:intergenic | 30.0% | |
| !!! | CTCATGTTTTTTGACATGTT+TGG | + | chr1_3:56485301-56485320 | Msa0127230:intron | 30.0% |
| CAAACAAACAATTTAAGCCA+CGG | - | chr1_3:56485394-56485413 | None:intergenic | 30.0% | |
| ! | ATTTTCTCTTGAAGAGTTGA+AGG | + | chr1_3:56485704-56485723 | Msa0127230:CDS | 30.0% |
| !! | TCTGTGTAGATGTTACTTTA+TGG | + | chr1_3:56485764-56485783 | Msa0127230:intron | 30.0% |
| !! | CTGTGTAGATGTTACTTTAT+GGG | + | chr1_3:56485765-56485784 | Msa0127230:intron | 30.0% |
| CCGAAAATAGATTAAACTGT+AGG | + | chr1_3:56486047-56486066 | Msa0127230:intron | 30.0% | |
| TACTCTCAAGTTACTAAACA+TGG | - | chr1_3:56486117-56486136 | None:intergenic | 30.0% | |
| TGCATATGACACTTAAATGA+TGG | + | chr1_3:56486229-56486248 | Msa0127230:intron | 30.0% | |
| GCATATGACACTTAAATGAT+GGG | + | chr1_3:56486230-56486249 | Msa0127230:intron | 30.0% | |
| !! | AAATGATGGGTTTATACACA+TGG | + | chr1_3:56486243-56486262 | Msa0127230:intron | 30.0% |
| !! | AAACGATGGGTTTTTACATA+TGG | + | chr1_3:56486297-56486316 | Msa0127230:intron | 30.0% |
| !! | TGGATGATGGTTTTTACATA+TGG | + | chr1_3:56486383-56486402 | Msa0127230:intron | 30.0% |
| ! | ATGGCTCTACACTTTAATAA+TGG | + | chr1_3:56486402-56486421 | Msa0127230:intron | 30.0% |
| ! | TGGCTCTACACTTTAATAAT+GGG | + | chr1_3:56486403-56486422 | Msa0127230:intron | 30.0% |
| AATAGCCATATGCAAAAACT+TGG | - | chr1_3:56486449-56486468 | None:intergenic | 30.0% | |
| ! | CTAGAGTTCAACTTTTATTC+AGG | - | chr1_3:56486518-56486537 | None:intergenic | 30.0% |
| TAGTTGAAGACTATAAAGTC+TGG | - | chr1_3:56486548-56486567 | None:intergenic | 30.0% | |
| CCTGTCATAAAAACAAAAGT+AGG | - | chr1_3:56486608-56486627 | None:intergenic | 30.0% | |
| !!! | CCTACTTTTGTTTTTATGAC+AGG | + | chr1_3:56486605-56486624 | Msa0127230:intron | 30.0% |
| TTGAGGTTCTTATATTACCT+TGG | - | chr1_3:56486784-56486803 | None:intergenic | 30.0% | |
| TAAGGTTACAGATGAAATGA+AGG | + | chr1_3:56487014-56487033 | Msa0127230:CDS | 30.0% | |
| TCATGAAACAGCTATATGAT+TGG | - | chr1_3:56487171-56487190 | None:intergenic | 30.0% | |
| GATTACTGGGCTTAGATAAT+GGG | - | chr1_3:56484910-56484929 | None:intergenic | 35.0% | |
| TGATTACTGGGCTTAGATAA+TGG | - | chr1_3:56484911-56484930 | None:intergenic | 35.0% | |
| AAGTGAAGGAATGGCAATTA+GGG | - | chr1_3:56484974-56484993 | None:intergenic | 35.0% | |
| TTGAACTGATCTGGTGAAAA+CGG | - | chr1_3:56485022-56485041 | None:intergenic | 35.0% | |
| CCCTAAATATTGAACTGATC+TGG | - | chr1_3:56485031-56485050 | None:intergenic | 35.0% | |
| !! | ACTATTCTTCGCTGATTCAA+AGG | + | chr1_3:56485063-56485082 | Msa0127230:intron | 35.0% |
| !!! | TTTTTTGACATGTTTGTCCG+TGG | + | chr1_3:56485374-56485393 | Msa0127230:intron | 35.0% |
| TCTGCAGTGTCTTGAATTAT+AGG | + | chr1_3:56485454-56485473 | Msa0127230:intron | 35.0% | |
| ! | AAATCTTCACTGCCTTCTTT+TGG | - | chr1_3:56485599-56485618 | None:intergenic | 35.0% |
| TTCAAGAGAAAATCCTTTCC+CGG | - | chr1_3:56485697-56485716 | None:intergenic | 35.0% | |
| !! | AGCTTGTTGAACTTTAACTG+TGG | + | chr1_3:56485733-56485752 | Msa0127230:intron | 35.0% |
| AAACTGTAGGAAAGATCGTA+CGG | + | chr1_3:56486060-56486079 | Msa0127230:intron | 35.0% | |
| GGTTTATACACATGGATGAT+GGG | + | chr1_3:56486251-56486270 | Msa0127230:intron | 35.0% | |
| !!! | GGATGATGGGTTTTTACATA+TGG | + | chr1_3:56486264-56486283 | Msa0127230:intron | 35.0% |
| AAAACCCATCGTTTAAGTGT+CGG | - | chr1_3:56486291-56486310 | None:intergenic | 35.0% | |
| TGGCTAGACACTTTAATGAT+CGG | + | chr1_3:56486350-56486369 | Msa0127230:intron | 35.0% | |
| CGGTTTATACATATGGATGA+TGG | + | chr1_3:56486370-56486389 | Msa0127230:intron | 35.0% | |
| ! | TGACACCAAGTTTTTGCATA+TGG | + | chr1_3:56486441-56486460 | Msa0127230:intron | 35.0% |
| TTGAAGACTATAAAGTCTGG+AGG | - | chr1_3:56486545-56486564 | None:intergenic | 35.0% | |
| CAATGATGGTATCAAAGCTA+AGG | - | chr1_3:56486834-56486853 | None:intergenic | 35.0% | |
| !! | ATTTTTATTTGTCTGCAGGC+TGG | + | chr1_3:56486901-56486920 | Msa0127230:intron | 35.0% |
| !! | TTTTTATTTGTCTGCAGGCT+GGG | + | chr1_3:56486902-56486921 | Msa0127230:intron | 35.0% |
| ACCTTAACAAGTTCAACAGT+TGG | - | chr1_3:56487000-56487019 | None:intergenic | 35.0% | |
| TTATAAACTCGGACTTCTCA+AGG | - | chr1_3:56487147-56487166 | None:intergenic | 35.0% | |
| ACATGCCAAGTCTTAAATCA+TGG | + | chr1_3:56487221-56487240 | Msa0127230:three_prime_UTR | 35.0% | |
| ! | GGAATCCATGATTTAAGACT+TGG | - | chr1_3:56487229-56487248 | None:intergenic | 35.0% |
| ! | GTACTGTCACTTAAGTTTGT+TGG | + | chr1_3:56487270-56487289 | Msa0127230:three_prime_UTR | 35.0% |
| ACGTGGTGGTAAAACTATTA+CGG | - | chr1_3:56487399-56487418 | None:intergenic | 35.0% | |
| CAAGTGAAGGAATGGCAATT+AGG | - | chr1_3:56484975-56484994 | None:intergenic | 40.0% | |
| AACATTGTTGTGCTTCACCA+TGG | - | chr1_3:56485112-56485131 | None:intergenic | 40.0% | |
| !! | GCTTACGGAAGTGTTCATTT+GGG | - | chr1_3:56485137-56485156 | None:intergenic | 40.0% |
| !! | TGCTTACGGAAGTGTTCATT+TGG | - | chr1_3:56485138-56485157 | None:intergenic | 40.0% |
| ATGAACACTTCCGTAAGCAT+TGG | + | chr1_3:56485139-56485158 | Msa0127230:CDS | 40.0% | |
| ! | CATAGTTCTGCCAATGCTTA+CGG | - | chr1_3:56485152-56485171 | None:intergenic | 40.0% |
| GGCAGAACTATGTCAAAACA+TGG | + | chr1_3:56485160-56485179 | Msa0127230:CDS | 40.0% | |
| TACAACATGAAACTTCGTGC+CGG | + | chr1_3:56485675-56485694 | Msa0127230:CDS | 40.0% | |
| ATGGGCTTGTAGATTTGTGT+TGG | + | chr1_3:56485783-56485802 | Msa0127230:intron | 40.0% | |
| !! | GCAGGGATGCTTATTTTCAT+AGG | - | chr1_3:56485871-56485890 | None:intergenic | 40.0% |
| GGGTTTATACACATGGATGA+TGG | + | chr1_3:56486250-56486269 | Msa0127230:intron | 40.0% | |
| ATGGCTCAACACTTAAACGA+TGG | + | chr1_3:56486283-56486302 | Msa0127230:intron | 40.0% | |
| TGGCTCAACACTTAAACGAT+GGG | + | chr1_3:56486284-56486303 | Msa0127230:intron | 40.0% | |
| AAACCCATCGTTTAAGTGTC+GGG | - | chr1_3:56486323-56486342 | None:intergenic | 40.0% | |
| !!! | TTGTTTTTATGACAGGCTGC+CGG | + | chr1_3:56486612-56486631 | Msa0127230:intron | 40.0% |
| TCAACAGAAATGCCAATGGT+TGG | - | chr1_3:56486657-56486676 | None:intergenic | 40.0% | |
| ATGGTCAACAGAAATGCCAA+TGG | - | chr1_3:56486661-56486680 | None:intergenic | 40.0% | |
| GAAAACATACAAGGCCAAGT+TGG | + | chr1_3:56486731-56486750 | Msa0127230:CDS | 40.0% | |
| TTGATACCATCATTGCTGCT+AGG | + | chr1_3:56486839-56486858 | Msa0127230:intron | 40.0% | |
| TGATACCATCATTGCTGCTA+GGG | + | chr1_3:56486840-56486859 | Msa0127230:intron | 40.0% | |
| ATTGCTGCTAGGGTTGAAAT+AGG | + | chr1_3:56486850-56486869 | Msa0127230:intron | 40.0% | |
| !! | TTTTATTTGTCTGCAGGCTG+GGG | + | chr1_3:56486903-56486922 | Msa0127230:intron | 40.0% |
| ! | ATCATACTTGCCGATTGTGA+GGG | + | chr1_3:56486969-56486988 | Msa0127230:CDS | 40.0% |
| !! | GCCAACTGTTGAACTTGTTA+AGG | + | chr1_3:56486996-56487015 | Msa0127230:CDS | 40.0% |
| AACTGATCTGGTGAAAACGG+CGG | - | chr1_3:56485019-56485038 | None:intergenic | 45.0% | |
| CATGGTTCAATCAACCAGCT+AGG | + | chr1_3:56485178-56485197 | Msa0127230:CDS | 45.0% | |
| GGGCTACAAAAATCACAGCA+CGG | - | chr1_3:56485575-56485594 | None:intergenic | 45.0% | |
| ! | TTTTGTAGCCCGCCAAAAGA+AGG | + | chr1_3:56485584-56485603 | Msa0127230:intron | 45.0% |
| ! | TCTTCACTGCCTTCTTTTGG+CGG | - | chr1_3:56485596-56485615 | None:intergenic | 45.0% |
| !! | CCTTTGAGGCCAATTGTTCA+CGG | + | chr1_3:56485639-56485658 | Msa0127230:CDS | 45.0% |
| GCAGTTTGACCGTGAACAAT+TGG | - | chr1_3:56485651-56485670 | None:intergenic | 45.0% | |
| ACAACATGAAACTTCGTGCC+GGG | + | chr1_3:56485676-56485695 | Msa0127230:CDS | 45.0% | |
| ATGACCCGACACTTAAACGA+TGG | + | chr1_3:56486316-56486335 | Msa0127230:intron | 45.0% | |
| TGACCCGACACTTAAACGAT+GGG | + | chr1_3:56486317-56486336 | Msa0127230:intron | 45.0% | |
| ATGGTTGGAGCAAGCTTCTT+GGG | - | chr1_3:56486642-56486661 | None:intergenic | 45.0% | |
| AATGGTTGGAGCAAGCTTCT+TGG | - | chr1_3:56486643-56486662 | None:intergenic | 45.0% | |
| ! | AAGAAGCTTGCTCCAACCAT+TGG | + | chr1_3:56486642-56486661 | Msa0127230:CDS | 45.0% |
| GCAGAGGCTGAAAACATACA+AGG | + | chr1_3:56486722-56486741 | Msa0127230:CDS | 45.0% | |
| CCTTGGGAAAACAACCAACT+TGG | - | chr1_3:56486748-56486767 | None:intergenic | 45.0% | |
| !!! | CCAAGTTGGTTGTTTTCCCA+AGG | + | chr1_3:56486745-56486764 | Msa0127230:CDS | 45.0% |
| TTCAACCCTAGCAGCAATGA+TGG | - | chr1_3:56486848-56486867 | None:intergenic | 45.0% | |
| GTATGATCCTTGGACTTGTG+TGG | - | chr1_3:56486956-56486975 | None:intergenic | 45.0% | |
| CAATCGGCAAGTATGATCCT+TGG | - | chr1_3:56486966-56486985 | None:intergenic | 45.0% | |
| ! | GATCATACTTGCCGATTGTG+AGG | + | chr1_3:56486968-56486987 | Msa0127230:CDS | 45.0% |
| ATCAACCAGCTAGGAAGACC+AGG | + | chr1_3:56485187-56485206 | Msa0127230:CDS | 50.0% | |
| GTAATTACCCAAGCGTCTCC+TGG | - | chr1_3:56485208-56485227 | None:intergenic | 50.0% | |
| ! | CTTCACTGCCTTCTTTTGGC+GGG | - | chr1_3:56485595-56485614 | None:intergenic | 50.0% |
| ! | AGGCAGTGAAGATTTTCCCC+CGG | + | chr1_3:56485604-56485623 | Msa0127230:CDS | 50.0% |
| ! | AATTGGCCTCAAAGGTCCAG+CGG | - | chr1_3:56485634-56485653 | None:intergenic | 50.0% |
| ! | CCGTGAACAATTGGCCTCAA+AGG | - | chr1_3:56485642-56485661 | None:intergenic | 50.0% |
| ATGAAACTTCGTGCCGGGAA+AGG | + | chr1_3:56485681-56485700 | Msa0127230:CDS | 50.0% | |
| AGCAAGCTTCTTGGGGATAC+CGG | - | chr1_3:56486634-56486653 | None:intergenic | 50.0% | |
| TGGTTGGAGCAAGCTTCTTG+GGG | - | chr1_3:56486641-56486660 | None:intergenic | 50.0% | |
| CCTCCAAAGAACGGTTCTTG+CGG | - | chr1_3:56486686-56486705 | None:intergenic | 50.0% | |
| CGCAAGAACCGTTCTTTGGA+GGG | + | chr1_3:56486684-56486703 | Msa0127230:CDS | 50.0% | |
| CTTGCAGACCCTCCAAAGAA+CGG | - | chr1_3:56486695-56486714 | None:intergenic | 50.0% | |
| GTCTGCAAGCTAATGTGCAG+AGG | + | chr1_3:56486706-56486725 | Msa0127230:CDS | 50.0% | |
| GTGGCATTAGCAAGTTCCTC+AGG | - | chr1_3:56486937-56486956 | None:intergenic | 50.0% | |
| GCTAATGCCACACAAGTCCA+AGG | + | chr1_3:56486946-56486965 | Msa0127230:CDS | 50.0% | |
| ! | GTTGGCTTCTCCCTCACAAT+CGG | - | chr1_3:56486982-56487001 | None:intergenic | 50.0% |
| CGCACCAACAAGCGTCATTT+GGG | + | chr1_3:56487069-56487088 | Msa0127230:CDS | 50.0% | |
| AGCACCCAAATGACGCTTGT+TGG | - | chr1_3:56487076-56487095 | None:intergenic | 50.0% | |
| ACAAGCGTCATTTGGGTGCT+AGG | + | chr1_3:56487076-56487095 | Msa0127230:CDS | 50.0% | |
| ATTTGGGTGCTAGGCTCAAG+AGG | + | chr1_3:56487085-56487104 | Msa0127230:CDS | 50.0% | |
| TTTGGGTGCTAGGCTCAAGA+GGG | + | chr1_3:56487086-56487105 | Msa0127230:CDS | 50.0% | |
| TGGTGAAAACGGCGGTACCT+GGG | - | chr1_3:56485011-56485030 | None:intergenic | 55.0% | |
| TAGGAAGACCAGGAGACGCT+TGG | + | chr1_3:56485197-56485216 | Msa0127230:CDS | 55.0% | |
| AGGAAGACCAGGAGACGCTT+GGG | + | chr1_3:56485198-56485217 | Msa0127230:CDS | 55.0% | |
| AAGAACGGTTCTTGCGGCGA+TGG | - | chr1_3:56486680-56486699 | None:intergenic | 55.0% | |
| TCGCCGCAAGAACCGTTCTT+TGG | + | chr1_3:56486680-56486699 | Msa0127230:CDS | 55.0% | |
| CCGCAAGAACCGTTCTTTGG+AGG | + | chr1_3:56486683-56486702 | Msa0127230:CDS | 55.0% | |
| GCGCACCAACAAGCGTCATT+TGG | + | chr1_3:56487068-56487087 | Msa0127230:CDS | 55.0% | |
| ! | GGTGGCGGCAAGTGAAGGAA+TGG | - | chr1_3:56484983-56485002 | None:intergenic | 60.0% |
| ! | AGAGAGGTGGCGGCAAGTGA+AGG | - | chr1_3:56484988-56485007 | None:intergenic | 60.0% |
| CTGGTGAAAACGGCGGTACC+TGG | - | chr1_3:56485012-56485031 | None:intergenic | 60.0% | |
| ! | CGTCTCCTGGTCTTCCTAGC+TGG | - | chr1_3:56485195-56485214 | None:intergenic | 60.0% |
| TCAAAGGTCCAGCGGTTGGC+CGG | - | chr1_3:56485626-56485645 | None:intergenic | 60.0% | |
| ! | GACGCTTGTTGGTGCGCTCA+AGG | - | chr1_3:56487065-56487084 | None:intergenic | 60.0% |
| TAGGCTCAAGAGGGCTGCTG+AGG | + | chr1_3:56487095-56487114 | Msa0127230:CDS | 60.0% | |
| GAGGGCTGCTGAGGCAGAAA+AGG | + | chr1_3:56487104-56487123 | Msa0127230:CDS | 60.0% | |
| GGTACCTGGGAGAGAGGTGG+CGG | - | chr1_3:56484998-56485017 | None:intergenic | 65.0% | |
| AACGGCGGTACCTGGGAGAG+AGG | - | chr1_3:56485004-56485023 | None:intergenic | 65.0% | |
| ! | ATTTTCCCCCGGCCAACCGC+TGG | + | chr1_3:56485615-56485634 | Msa0127230:CDS | 65.0% |
| ! | AAAGGTCCAGCGGTTGGCCG+GGG | - | chr1_3:56485624-56485643 | None:intergenic | 65.0% |
| ! | CAAAGGTCCAGCGGTTGGCC+GGG | - | chr1_3:56485625-56485644 | None:intergenic | 65.0% |
| GGCCAACCGCTGGACCTTTG+AGG | + | chr1_3:56485625-56485644 | Msa0127230:CDS | 65.0% | |
| GGCCTCAAAGGTCCAGCGGT+TGG | - | chr1_3:56485630-56485649 | None:intergenic | 65.0% | |
| ! | TGGTCTTGCGTGCGCGCCTT+GGG | - | chr1_3:56486764-56486783 | None:intergenic | 65.0% |
| !! | TTGGTCTTGCGTGCGCGCCT+TGG | - | chr1_3:56486765-56486784 | None:intergenic | 65.0% |
| AAGGCGCGCACGCAAGACCA+AGG | + | chr1_3:56486764-56486783 | Msa0127230:CDS | 65.0% | |
| GGCTGGGGACTCTACACCTG+AGG | + | chr1_3:56486918-56486937 | Msa0127230:intron | 65.0% | |
| CTTGCCGCCACCTCTCTCCC+AGG | + | chr1_3:56484991-56485010 | Msa0127230:five_prime_UTR | 70.0% | |
| GGCGGTACCTGGGAGAGAGG+TGG | - | chr1_3:56485001-56485020 | None:intergenic | 70.0% | |
| ! | AAGGTCCAGCGGTTGGCCGG+GGG | - | chr1_3:56485623-56485642 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 56484855 | 56487427 | 56484855 | ID=Msa0127230;Name=Msa0127230 |
| chr1_3 | mRNA | 56484855 | 56487427 | 56484855 | ID=Msa0127230-mRNA-1;Parent=Msa0127230;Name=Msa0127230-mRNA-1;_AED=0.12;_eAED=0.12;_QI=165|1|1|1|0.75|0.6|5|287|207 |
| chr1_3 | exon | 56484855 | 56485012 | 56484855 | ID=Msa0127230-mRNA-1:exon:17784;Parent=Msa0127230-mRNA-1 |
| chr1_3 | exon | 56485104 | 56485219 | 56485104 | ID=Msa0127230-mRNA-1:exon:17785;Parent=Msa0127230-mRNA-1 |
| chr1_3 | exon | 56485592 | 56485725 | 56485592 | ID=Msa0127230-mRNA-1:exon:17786;Parent=Msa0127230-mRNA-1 |
| chr1_3 | exon | 56486627 | 56486785 | 56486627 | ID=Msa0127230-mRNA-1:exon:17787;Parent=Msa0127230-mRNA-1 |
| chr1_3 | exon | 56486919 | 56487427 | 56486919 | ID=Msa0127230-mRNA-1:exon:17788;Parent=Msa0127230-mRNA-1 |
| chr1_3 | five_prime_UTR | 56484855 | 56485012 | 56484855 | ID=Msa0127230-mRNA-1:five_prime_utr;Parent=Msa0127230-mRNA-1 |
| chr1_3 | five_prime_UTR | 56485104 | 56485110 | 56485104 | ID=Msa0127230-mRNA-1:five_prime_utr;Parent=Msa0127230-mRNA-1 |
| chr1_3 | CDS | 56485111 | 56485219 | 56485111 | ID=Msa0127230-mRNA-1:cds;Parent=Msa0127230-mRNA-1 |
| chr1_3 | CDS | 56485592 | 56485725 | 56485592 | ID=Msa0127230-mRNA-1:cds;Parent=Msa0127230-mRNA-1 |
| chr1_3 | CDS | 56486627 | 56486785 | 56486627 | ID=Msa0127230-mRNA-1:cds;Parent=Msa0127230-mRNA-1 |
| chr1_3 | CDS | 56486919 | 56487140 | 56486919 | ID=Msa0127230-mRNA-1:cds;Parent=Msa0127230-mRNA-1 |
| chr1_3 | three_prime_UTR | 56487141 | 56487427 | 56487141 | ID=Msa0127230-mRNA-1:three_prime_utr;Parent=Msa0127230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
