Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079560 | XP_013466087.1 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 2.51e-148 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079560 | sp|P41129|RL132_BRANA | 85.437 | 206 | 30 | 0 | 2 | 207 | 1 | 206 | 2.68e-130 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079560 | B7FGS0 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 1.20e-148 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0079560 | 0.854278 | 1.368880e-61 | -8.615850e-47 |
| Msa0003330 | Msa0079560 | 0.841088 | 5.873594e-58 | -8.615850e-47 |
| Msa0020870 | Msa0079560 | 0.803467 | 3.438427e-49 | -8.615850e-47 |
| Msa0026270 | Msa0079560 | 0.817474 | 3.235813e-52 | -8.615850e-47 |
| Msa0042510 | Msa0079560 | 0.993732 | 8.107267e-202 | -8.615850e-47 |
| Msa0079560 | Msa0086160 | 0.844686 | 6.481755e-59 | -8.615850e-47 |
| Msa0079560 | Msa0094210 | 0.808634 | 2.812140e-50 | -8.615850e-47 |
| Msa0079560 | Msa0108750 | 0.801974 | 6.988505e-49 | -8.615850e-47 |
| Msa0079560 | Msa0116600 | 0.825938 | 3.567495e-54 | -8.615850e-47 |
| Msa0079560 | Msa0116690 | 0.811598 | 6.462021e-51 | -8.615850e-47 |
| Msa0079560 | Msa0127230 | 0.998228 | 2.505728e-259 | -8.615850e-47 |
| Msa0079560 | Msa0128330 | 0.807977 | 3.883288e-50 | -8.615850e-47 |
| Msa0079560 | Msa0132460 | 0.800133 | 1.662665e-48 | -8.615850e-47 |
| Msa0079560 | Msa0136220 | 0.804249 | 2.365265e-49 | -8.615850e-47 |
| Msa0079560 | Msa0146910 | 0.851841 | 6.822461e-61 | -8.615850e-47 |
| Msa0079560 | Msa0167860 | 0.829113 | 6.172372e-55 | -8.615850e-47 |
| Msa0079560 | Msa0168320 | 0.841813 | 3.783121e-58 | -8.615850e-47 |
| Msa0079560 | Msa0174580 | 0.801212 | 1.001458e-48 | -8.615850e-47 |
| Msa0079560 | Msa0182050 | 0.805273 | 1.445609e-49 | -8.615850e-47 |
| Msa0079560 | Msa0182100 | 0.835145 | 1.990082e-56 | -8.615850e-47 |
| Msa0079560 | Msa0188740 | 0.828966 | 6.701304e-55 | -8.615850e-47 |
| Msa0079560 | Msa0192300 | 0.874563 | 6.124215e-68 | -8.615850e-47 |
| Msa0079560 | Msa0216200 | 0.805277 | 1.442978e-49 | -8.615850e-47 |
| Msa0079560 | Msa0219090 | 0.849641 | 2.838351e-60 | -8.615850e-47 |
| Msa0079560 | Msa0233550 | 0.855627 | 5.556183e-62 | -8.615850e-47 |
| Msa0079560 | Msa0239420 | 0.838839 | 2.265981e-57 | -8.615850e-47 |
| Msa0079560 | Msa0256350 | 0.838890 | 2.197339e-57 | -8.615850e-47 |
| Msa0079560 | Msa0270160 | 0.876606 | 1.221676e-68 | -8.615850e-47 |
| Msa0079560 | Msa0274940 | 0.815929 | 7.185536e-52 | -8.615850e-47 |
| Msa0079560 | Msa0277600 | 0.800162 | 1.640263e-48 | -8.615850e-47 |
| Msa0079560 | Msa0301250 | 0.881098 | 3.181272e-70 | -8.615850e-47 |
| Msa0079560 | Msa0313060 | 0.862737 | 4.100302e-64 | -8.615850e-47 |
| Msa0079560 | Msa0315430 | 0.817894 | 2.602466e-52 | -8.615850e-47 |
| Msa0079560 | Msa0371490 | 0.810217 | 1.286114e-50 | -8.615850e-47 |
| Msa0079560 | Msa0373350 | 0.881882 | 1.658710e-70 | -8.615850e-47 |
| Msa0079560 | Msa0376850 | 0.849680 | 2.768002e-60 | -8.615850e-47 |
| Msa0079560 | Msa0377370 | 0.810904 | 9.140640e-51 | -8.615850e-47 |
| Msa0079560 | Msa0377610 | 0.842387 | 2.668387e-58 | -8.615850e-47 |
| Msa0079560 | Msa0382670 | 0.825297 | 5.061989e-54 | -8.615850e-47 |
| Msa0079560 | Msa0383240 | 0.804240 | 2.375284e-49 | -8.615850e-47 |
| Msa0079560 | Msa0387290 | 0.860076 | 2.658192e-63 | -8.615850e-47 |
| Msa0079560 | Msa0388520 | 0.875620 | 2.669681e-68 | -8.615850e-47 |
| Msa0079560 | Msa0388540 | 0.815764 | 7.820919e-52 | -8.615850e-47 |
| Msa0079560 | Msa0416470 | 0.843069 | 1.757386e-58 | -8.615850e-47 |
| Msa0079560 | Msa0421920 | 0.848670 | 5.286410e-60 | -8.615850e-47 |
| Msa0079560 | Msa0426090 | 0.807102 | 5.956303e-50 | -8.615850e-47 |
| Msa0079560 | Msa0426820 | 0.858317 | 8.948749e-63 | -8.615850e-47 |
| Msa0079560 | Msa0426940 | 0.802546 | 5.329482e-49 | -8.615850e-47 |
| Msa0079560 | Msa0433010 | 0.811831 | 5.750895e-51 | -8.615850e-47 |
| Msa0079560 | Msa0467740 | 0.874985 | 4.400122e-68 | -8.615850e-47 |
| Msa0079560 | Msa0472480 | 0.806453 | 8.166318e-50 | -8.615850e-47 |
| Msa0079560 | Msa0477670 | 0.849272 | 3.596941e-60 | -8.615850e-47 |
| Msa0079560 | Msa0482560 | 0.828655 | 7.969466e-55 | -8.615850e-47 |
| Msa0079560 | Msa0485220 | 0.844302 | 8.223096e-59 | -8.615850e-47 |
| Msa0079560 | Msa0511760 | 0.874954 | 4.510223e-68 | -8.615850e-47 |
| Msa0079560 | Msa0514130 | 0.868345 | 6.995365e-66 | -8.615850e-47 |
| Msa0079560 | Msa0516830 | 0.849110 | 3.991495e-60 | -8.615850e-47 |
| Msa0079560 | Msa0524340 | 0.808144 | 3.577166e-50 | -8.615850e-47 |
| Msa0079560 | Msa0547920 | 0.833148 | 6.296978e-56 | -8.615850e-47 |
| Msa0079560 | Msa0573550 | 0.858179 | 9.840101e-63 | -8.615850e-47 |
| Msa0079560 | Msa0574780 | 0.892490 | 1.512696e-74 | -8.615850e-47 |
| Msa0079560 | Msa0578010 | 0.884682 | 1.557045e-71 | -8.615850e-47 |
| Msa0079560 | Msa0597240 | 0.829686 | 4.479867e-55 | -8.615850e-47 |
| Msa0079560 | Msa0602900 | 0.851133 | 1.081932e-60 | -8.615850e-47 |
| Msa0079560 | Msa0605600 | 0.800403 | 1.464782e-48 | -8.615850e-47 |
| Msa0079560 | Msa0609120 | 0.804369 | 2.233362e-49 | -8.615850e-47 |
| Msa0079560 | Msa0619230 | 0.895066 | 1.363900e-75 | -8.615850e-47 |
| Msa0079560 | Msa0621190 | 0.910727 | 1.354851e-82 | -8.615850e-47 |
| Msa0079560 | Msa0643960 | 0.838470 | 2.822205e-57 | -8.615850e-47 |
| Msa0079560 | Msa0649890 | 0.802527 | 5.377494e-49 | -8.615850e-47 |
| Msa0079560 | Msa0656450 | 0.909416 | 5.835142e-82 | -8.615850e-47 |
| Msa0079560 | Msa0691760 | 0.828344 | 9.474310e-55 | -8.615850e-47 |
| Msa0079560 | Msa0694400 | 0.838205 | 3.301929e-57 | -8.615850e-47 |
| Msa0079560 | Msa0700370 | 0.904435 | 1.231238e-79 | -8.615850e-47 |
| Msa0079560 | Msa0708630 | 0.801988 | 6.942839e-49 | -8.615850e-47 |
| Msa0079560 | Msa0752240 | 0.804848 | 1.773536e-49 | -8.615850e-47 |
| Msa0079560 | Msa0790450 | 0.831544 | 1.572019e-55 | -8.615850e-47 |
| Msa0079560 | Msa0826610 | 0.813992 | 1.932753e-51 | -8.615850e-47 |
| Msa0079560 | Msa0864660 | 0.811997 | 5.290849e-51 | -8.615850e-47 |
| Msa0079560 | Msa0929700 | 0.841810 | 3.791821e-58 | -8.615850e-47 |
| Msa0079560 | Msa0930100 | 0.813647 | 2.302527e-51 | -8.615850e-47 |
| Msa0079560 | Msa0930360 | 0.893515 | 5.848231e-75 | -8.615850e-47 |
| Msa0079560 | Msa0930790 | 0.852345 | 4.906488e-61 | -8.615850e-47 |
| Msa0079560 | Msa0930890 | 0.850288 | 1.870429e-60 | -8.615850e-47 |
| Msa0079560 | Msa0987570 | 0.856392 | 3.319454e-62 | -8.615850e-47 |
| Msa0079560 | Msa0998890 | 0.883656 | 3.729017e-71 | -8.615850e-47 |
| Msa0079560 | Msa1035040 | 0.801415 | 9.101629e-49 | -8.615850e-47 |
| Msa0079560 | Msa1082050 | 0.856465 | 3.159534e-62 | -8.615850e-47 |
| Msa0079560 | Msa1124980 | 0.821020 | 5.041169e-53 | -8.615850e-47 |
| Msa0079560 | Msa1126690 | 0.840291 | 9.500804e-58 | -8.615850e-47 |
| Msa0079560 | Msa1130680 | 0.800681 | 1.285932e-48 | -8.615850e-47 |
| Msa0079560 | Msa1144630 | 0.877350 | 6.741677e-69 | -8.615850e-47 |
| Msa0079560 | Msa1165210 | 0.801472 | 8.861501e-49 | -8.615850e-47 |
| Msa0079560 | Msa1165700 | 0.899662 | 1.587884e-77 | -8.615850e-47 |
| Msa0079560 | Msa1167360 | 0.803688 | 3.093038e-49 | -8.615850e-47 |
| Msa0079560 | Msa1180000 | 0.806526 | 7.881657e-50 | -8.615850e-47 |
| Msa0079560 | Msa1189540 | 0.824247 | 8.952994e-54 | -8.615850e-47 |
| Msa0079560 | Msa1213850 | 0.832029 | 1.193521e-55 | -8.615850e-47 |
| Msa0079560 | Msa1227350 | 0.869409 | 3.163271e-66 | -8.615850e-47 |
| Msa0079560 | Msa1235950 | 0.841160 | 5.623936e-58 | -8.615850e-47 |
| Msa0079560 | Msa1235980 | 0.846963 | 1.560547e-59 | -8.615850e-47 |
| Msa0079560 | Msa1237040 | 0.839029 | 2.022850e-57 | -8.615850e-47 |
| Msa0079560 | Msa1284800 | 0.882252 | 1.217268e-70 | -8.615850e-47 |
| Msa0079560 | Msa1317390 | 0.857300 | 1.793297e-62 | -8.615850e-47 |
| Msa0079560 | Msa1351020 | 0.851128 | 1.085479e-60 | -8.615850e-47 |
| Msa0079560 | Msa1363930 | 0.878693 | 2.284496e-69 | -8.615850e-47 |
| Msa0079560 | Msa1366540 | 0.907519 | 4.640964e-81 | -8.615850e-47 |
| Msa0079560 | Msa1385480 | 0.829648 | 4.575708e-55 | -8.615850e-47 |
| Msa0079560 | Msa1387750 | 0.928662 | 2.102901e-92 | -8.615850e-47 |
| Msa0079560 | Msa1390760 | 0.896784 | 2.645807e-76 | -8.615850e-47 |
| Msa0079560 | Msa1403520 | 0.861082 | 1.317078e-63 | -8.615850e-47 |
| Msa0079560 | Msa1407550 | 0.900168 | 9.595048e-78 | -8.615850e-47 |
| Msa0079560 | Msa1413570 | 0.905036 | 6.559472e-80 | -8.615850e-47 |
| Msa0079560 | Msa1424570 | 0.807142 | 5.840418e-50 | -8.615850e-47 |
| Msa0079560 | Msa1432310 | 0.844243 | 8.529733e-59 | -8.615850e-47 |
| Msa0079560 | Msa1446510 | 0.861053 | 1.344077e-63 | -8.615850e-47 |
| Msa0079560 | Msa1450560 | 0.834573 | 2.772331e-56 | -8.615850e-47 |
| Msa0079560 | Msa1453530 | 0.832948 | 7.062369e-56 | -8.615850e-47 |
| Msa0079560 | Msa1463510 | 0.866391 | 2.951912e-65 | -8.615850e-47 |
| Msa0079560 | Msa1463570 | 0.800915 | 1.151858e-48 | -8.615850e-47 |
| Msa0079560 | Msa1465700 | 0.840669 | 7.566929e-58 | -8.615850e-47 |
| Msa0079560 | Msa1465890 | 0.859834 | 3.144251e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079560 | MtrunA17_Chr1g0155011 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 2.31e-152 | 420 |
| Msa0079560 | MtrunA17_Chr7g0271401 | 97.585 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 7.32e-150 | 414 |
| Msa0079560 | MtrunA17_Chr5g0409231 | 97.101 | 207 | 6 | 0 | 1 | 207 | 1 | 207 | 2.85e-149 | 412 |
| Msa0079560 | MtrunA17_Chr8g0369561 | 90.196 | 51 | 5 | 0 | 134 | 184 | 7 | 57 | 2.82e-27 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079560 | AT3G49010.3 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0079560 | AT3G49010.6 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0079560 | AT3G49010.1 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0079560 | AT3G49010.2 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0079560 | AT3G49010.7 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 5.83e-126 | 354 |
| Msa0079560 | AT3G49010.4 | 86.911 | 191 | 23 | 1 | 2 | 192 | 1 | 189 | 1.57e-123 | 348 |
| Msa0079560 | AT5G23900.1 | 84.946 | 186 | 28 | 0 | 2 | 187 | 1 | 186 | 1.19e-118 | 335 |
| Msa0079560 | AT3G48960.1 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 9.33e-109 | 310 |
| Msa0079560 | AT3G49010.5 | 62.304 | 191 | 19 | 1 | 2 | 192 | 1 | 138 | 3.84e-79 | 233 |
Find 94 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTAATCACCATAAATT+TGG | 0.073611 | 1_2:+57474480 | Msa0079560:three_prime_UTR |
| TTCTAAAGAACCCAAATTTA+TGG | 0.096605 | 1_2:-57474491 | None:intergenic |
| TGTTCATAAGAAAACTAATT+TGG | 0.216115 | 1_2:-57474348 | None:intergenic |
| TGATTACTGGGCTTAGATAA+TGG | 0.279749 | 1_2:-57472149 | None:intergenic |
| AGTGAAGGAAAATGGCAATT+AGG | 0.291914 | 1_2:-57472218 | None:intergenic |
| GGGTTTGTTGTAGAATTTAA+AGG | 0.293812 | 1_2:-57472197 | None:intergenic |
| AAATCTTCACTGCCTTCTTT+TGG | 0.308723 | 1_2:-57472860 | None:intergenic |
| TTGGTCTTGCGTGCGCGCCT+TGG | 0.314350 | 1_2:-57473909 | None:intergenic |
| TCGCCGCAAGAACCGTTCTT+TGG | 0.319042 | 1_2:+57473827 | Msa0079560:CDS |
| TGCTTACGGAAGTGTTCATT+TGG | 0.319315 | 1_2:-57472383 | None:intergenic |
| ATGGTTGGAGCAAGCTTCTT+GGG | 0.323930 | 1_2:-57473786 | None:intergenic |
| GCGCACCAACAAGCGTCATT+TGG | 0.336081 | 1_2:+57474215 | Msa0079560:CDS |
| ACTTTAATCACCATAAATTT+GGG | 0.346852 | 1_2:+57474481 | Msa0079560:three_prime_UTR |
| GTGAAGGAAAATGGCAATTA+GGG | 0.347621 | 1_2:-57472217 | None:intergenic |
| GATTACTGGGCTTAGATAAT+GGG | 0.348601 | 1_2:-57472148 | None:intergenic |
| GCCAACTGTTGAACTTGTTA+AGG | 0.359245 | 1_2:+57474143 | Msa0079560:CDS |
| GTACTGTCACTTAAGTTTGT+TGG | 0.359666 | 1_2:+57474417 | Msa0079560:three_prime_UTR |
| TGGTCTTGCGTGCGCGCCTT+GGG | 0.368380 | 1_2:-57473908 | None:intergenic |
| AATGGTTGGAGCAAGCTTCT+TGG | 0.375579 | 1_2:-57473787 | None:intergenic |
| CAAAGGTCCAGCGGTTGGCC+GGG | 0.376507 | 1_2:-57472886 | None:intergenic |
| CGCACCAACAAGCGTCATTT+GGG | 0.378501 | 1_2:+57474216 | Msa0079560:CDS |
| TGGCGGCAAGTGAAGGAAAA+TGG | 0.383149 | 1_2:-57472226 | None:intergenic |
| TTCAAGAGAAAATCCTTTCC+CGG | 0.387347 | 1_2:-57472958 | None:intergenic |
| CGTCTCCTGGTCTTCCTAGC+TGG | 0.389013 | 1_2:-57472440 | None:intergenic |
| TCATGAAACAGCTATATGAT+TGG | 0.405835 | 1_2:-57474315 | None:intergenic |
| GCAGTTTGACCGTGAACAAT+TGG | 0.409288 | 1_2:-57472912 | None:intergenic |
| TCAAAGGTCCAGCGGTTGGC+CGG | 0.411486 | 1_2:-57472887 | None:intergenic |
| AAAGGTCCAGCGGTTGGCCG+GGG | 0.418246 | 1_2:-57472885 | None:intergenic |
| CATAGTTCTGCCAATGCTTA+CGG | 0.420637 | 1_2:-57472397 | None:intergenic |
| AGCAAGCTTCTTGGGGATAC+CGG | 0.426394 | 1_2:-57473778 | None:intergenic |
| ACGTGGTGGTAAAACTATTA+CGG | 0.434728 | 1_2:-57474545 | None:intergenic |
| GAGGGCTGCTGAGGCAGAAA+AGG | 0.445694 | 1_2:+57474251 | Msa0079560:CDS |
| GCTTACGGAAGTGTTCATTT+GGG | 0.453054 | 1_2:-57472382 | None:intergenic |
| GGCCAACCGCTGGACCTTTG+AGG | 0.459880 | 1_2:+57472889 | Msa0079560:CDS |
| CGCAAGAACCGTTCTTTGGA+GGG | 0.473099 | 1_2:+57473831 | Msa0079560:CDS |
| CTTGCCGCCACCTCTCTCCC+AGG | 0.474707 | 1_2:+57472239 | Msa0079560:five_prime_UTR |
| AGCACCCAAATGACGCTTGT+TGG | 0.478609 | 1_2:-57474220 | None:intergenic |
| ATTAAAGTAAGCAATTGAAC+AGG | 0.478756 | 1_2:-57474466 | None:intergenic |
| CCTTGGGAAAACAACCAACT+TGG | 0.479943 | 1_2:-57473892 | None:intergenic |
| TAGGAAGACCAGGAGACGCT+TGG | 0.484150 | 1_2:+57472445 | Msa0079560:CDS |
| TTATAGGTATCATATTATAG+AGG | 0.485049 | 1_2:+57472125 | Msa0079560:five_prime_UTR |
| CCTTTGAGGCCAATTGTTCA+CGG | 0.485229 | 1_2:+57472903 | Msa0079560:CDS |
| GGAATCCATGATTTAAGACT+TGG | 0.487015 | 1_2:-57474373 | None:intergenic |
| ACAAGCGTCATTTGGGTGCT+AGG | 0.489744 | 1_2:+57474223 | Msa0079560:CDS |
| AGCACCTGGGAGAGAGGTGG+CGG | 0.492429 | 1_2:-57472243 | None:intergenic |
| CCGCAAGAACCGTTCTTTGG+AGG | 0.494965 | 1_2:+57473830 | Msa0079560:CDS |
| AGGAAGACCAGGAGACGCTT+GGG | 0.497890 | 1_2:+57472446 | Msa0079560:CDS |
| GTAATTACCCAAGCGTCTCC+TGG | 0.500114 | 1_2:-57472453 | None:intergenic |
| GACGCTTGTTGGTGCGCTCA+AGG | 0.500487 | 1_2:-57474209 | None:intergenic |
| TAAGGTTACAGATGAAATGA+AGG | 0.502882 | 1_2:+57474161 | Msa0079560:CDS |
| AAGAAGCTTGCTCCAACCAT+TGG | 0.507390 | 1_2:+57473789 | Msa0079560:CDS |
| CAATCGGCAAGTATGATCCT+TGG | 0.510540 | 1_2:-57474110 | None:intergenic |
| ACATGCCAAGTCTTAAATCA+TGG | 0.510697 | 1_2:+57474368 | Msa0079560:three_prime_UTR |
| GTTGGCTTCTCCCTCACAAT+CGG | 0.511949 | 1_2:-57474126 | None:intergenic |
| GTGGCATTAGCAAGTTCCTC+AGG | 0.518954 | 1_2:-57474081 | None:intergenic |
| AAGAACGGTTCTTGCGGCGA+TGG | 0.520566 | 1_2:-57473824 | None:intergenic |
| ATGAAACTTCGTGCCGGGAA+AGG | 0.523982 | 1_2:+57472945 | Msa0079560:CDS |
| ACCTTAACAAGTTCAACAGT+TGG | 0.524264 | 1_2:-57474144 | None:intergenic |
| CCGTGAACAATTGGCCTCAA+AGG | 0.527396 | 1_2:-57472903 | None:intergenic |
| TTATAAACTCGGACTTCTCA+AGG | 0.536902 | 1_2:-57474291 | None:intergenic |
| ATTTGGGTGCTAGGCTCAAG+AGG | 0.544127 | 1_2:+57474232 | Msa0079560:CDS |
| ATCAACCAGCTAGGAAGACC+AGG | 0.552070 | 1_2:+57472435 | Msa0079560:CDS |
| GGCCTCAAAGGTCCAGCGGT+TGG | 0.553506 | 1_2:-57472891 | None:intergenic |
| GATCATACTTGCCGATTGTG+AGG | 0.555446 | 1_2:+57474115 | Msa0079560:CDS |
| AGAGAGGTGGCGGCAAGTGA+AGG | 0.560745 | 1_2:-57472233 | None:intergenic |
| AACGGCAGCACCTGGGAGAG+AGG | 0.563624 | 1_2:-57472249 | None:intergenic |
| ACAACATGAAACTTCGTGCC+GGG | 0.563845 | 1_2:+57472940 | Msa0079560:CDS |
| TAGGCTCAAGAGGGCTGCTG+AGG | 0.568695 | 1_2:+57474242 | Msa0079560:CDS |
| AAGGTCCAGCGGTTGGCCGG+GGG | 0.569118 | 1_2:-57472884 | None:intergenic |
| TACAACATGAAACTTCGTGC+CGG | 0.570733 | 1_2:+57472939 | Msa0079560:CDS |
| GAAAACATACAAGGCCAAGT+TGG | 0.571763 | 1_2:+57473878 | Msa0079560:CDS |
| ATATGATTGGATTATAAACT+CGG | 0.572859 | 1_2:-57474302 | None:intergenic |
| ATGAACACTTCCGTAAGCAT+TGG | 0.574424 | 1_2:+57472387 | Msa0079560:CDS |
| TCAACAGAAATGCCAATGGT+TGG | 0.577031 | 1_2:-57473801 | None:intergenic |
| CCTCCAAAGAACGGTTCTTG+CGG | 0.586577 | 1_2:-57473830 | None:intergenic |
| CATGGTTCAATCAACCAGCT+AGG | 0.591929 | 1_2:+57472426 | Msa0079560:CDS |
| CTTGCAGACCCTCCAAAGAA+CGG | 0.595271 | 1_2:-57473839 | None:intergenic |
| AACATTGTTGTGCTTCACCA+TGG | 0.595442 | 1_2:-57472357 | None:intergenic |
| ACAGAATAATAGTAAAGCAA+AGG | 0.597306 | 1_2:-57474394 | None:intergenic |
| ATCATACTTGCCGATTGTGA+GGG | 0.601270 | 1_2:+57474116 | Msa0079560:CDS |
| TGGTTGGAGCAAGCTTCTTG+GGG | 0.611973 | 1_2:-57473785 | None:intergenic |
| GGCAGCACCTGGGAGAGAGG+TGG | 0.619523 | 1_2:-57472246 | None:intergenic |
| GCTAATGCCACACAAGTCCA+AGG | 0.623000 | 1_2:+57474093 | Msa0079560:CDS |
| AAGGCGCGCACGCAAGACCA+AGG | 0.626116 | 1_2:+57473911 | Msa0079560:CDS |
| GTCTGCAAGCTAATGTGCAG+AGG | 0.628654 | 1_2:+57473853 | Msa0079560:CDS |
| TTTGGGTGCTAGGCTCAAGA+GGG | 0.631845 | 1_2:+57474233 | Msa0079560:CDS |
| GGCAGAACTATGTCAAAACA+TGG | 0.632555 | 1_2:+57472408 | Msa0079560:CDS |
| GGCTGGGGACTCTACACCTG+AGG | 0.639995 | 1_2:+57474065 | Msa0079560:intron |
| ATTATCAAATTAATACGTGG+TGG | 0.656768 | 1_2:-57474559 | None:intergenic |
| GCAGAGGCTGAAAACATACA+AGG | 0.656774 | 1_2:+57473869 | Msa0079560:CDS |
| ATGGTCAACAGAAATGCCAA+TGG | 0.663073 | 1_2:-57473805 | None:intergenic |
| AATTGGCCTCAAAGGTCCAG+CGG | 0.684475 | 1_2:-57472895 | None:intergenic |
| GTATGATCCTTGGACTTGTG+TGG | 0.704331 | 1_2:-57474100 | None:intergenic |
| TATATTATCAAATTAATACG+TGG | 0.735354 | 1_2:-57474562 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAGTTGTAAAAATAT+AGG | - | chr1_2:57472478-57472497 | None:intergenic | 10.0% |
| !!! | AAAAGAAAGTAGTATTTTAT+AGG | + | chr1_2:57472109-57472128 | Msa0079560:five_prime_UTR | 15.0% |
| !! | AAGTTATAATATGTAGTTTA+TGG | - | chr1_2:57473723-57473742 | None:intergenic | 15.0% |
| !! | TTATAGGTATCATATTATAG+AGG | + | chr1_2:57472125-57472144 | Msa0079560:five_prime_UTR | 20.0% |
| !! | ATATGTTACTCTTAAATGAT+TGG | - | chr1_2:57473407-57473426 | None:intergenic | 20.0% |
| !! | TAACATATAGTTCTTGTAAT+GGG | + | chr1_2:57473419-57473438 | Msa0079560:intron | 20.0% |
| !!! | TAATAATGGGTTTATACATA+TGG | + | chr1_2:57473563-57473582 | Msa0079560:intron | 20.0% |
| !! | ATAAACTAAAATCATCATTG+AGG | - | chr1_2:57473948-57473967 | None:intergenic | 20.0% |
| !!! | TTGAAATAGGAAGTATTAAT+CGG | + | chr1_2:57474010-57474029 | Msa0079560:intron | 20.0% |
| !!! | AATTATTTTTATTTGTCTGC+AGG | + | chr1_2:57474044-57474063 | Msa0079560:intron | 20.0% |
| !! | ATATGATTGGATTATAAACT+CGG | - | chr1_2:57474305-57474324 | None:intergenic | 20.0% |
| !! | TGTTCATAAGAAAACTAATT+TGG | - | chr1_2:57474351-57474370 | None:intergenic | 20.0% |
| !! | TACTTTAATCACCATAAATT+TGG | + | chr1_2:57474480-57474499 | Msa0079560:three_prime_UTR | 20.0% |
| !! | ACTTTAATCACCATAAATTT+GGG | + | chr1_2:57474481-57474500 | Msa0079560:three_prime_UTR | 20.0% |
| !! | ATGCAGTTTTTATGATTACT+GGG | - | chr1_2:57472164-57472183 | None:intergenic | 25.0% |
| !! | AATGCAGTTTTTATGATTAC+TGG | - | chr1_2:57472165-57472184 | None:intergenic | 25.0% |
| !!! | AAGGCTTGTTTTTGATTTTT+AGG | + | chr1_2:57472330-57472349 | Msa0079560:intron | 25.0% |
| !! | TTTTACGCTAAAGACTAAAT+TGG | + | chr1_2:57473104-57473123 | Msa0079560:intron | 25.0% |
| ! | TATTAGATAGAACTAATGCA+GGG | - | chr1_2:57473152-57473171 | None:intergenic | 25.0% |
| ! | ATATTAGATAGAACTAATGC+AGG | - | chr1_2:57473153-57473172 | None:intergenic | 25.0% |
| ! | ATCTAATATAATCATTGTCG+TGG | + | chr1_2:57473164-57473183 | Msa0079560:intron | 25.0% |
| !! | TCATATGACTAATTGATTTC+TGG | + | chr1_2:57473250-57473269 | Msa0079560:intron | 25.0% |
| !! | CATATGACTAATTGATTTCT+GGG | + | chr1_2:57473251-57473270 | Msa0079560:intron | 25.0% |
| !! | CTACAGTTTAATCTATTTTC+GGG | - | chr1_2:57473315-57473334 | None:intergenic | 25.0% |
| !! | CCTACAGTTTAATCTATTTT+CGG | - | chr1_2:57473316-57473335 | None:intergenic | 25.0% |
| ! | TACAGAATTGAAGACTATAT+AGG | - | chr1_2:57473352-57473371 | None:intergenic | 25.0% |
| ! | GTAACATATAGTTCTTGTAA+TGG | + | chr1_2:57473418-57473437 | Msa0079560:intron | 25.0% |
| ! | ACAGAATAATAGTAAAGCAA+AGG | - | chr1_2:57474397-57474416 | None:intergenic | 25.0% |
| ! | ATTAAAGTAAGCAATTGAAC+AGG | - | chr1_2:57474469-57474488 | None:intergenic | 25.0% |
| !! | TTCTAAAGAACCCAAATTTA+TGG | - | chr1_2:57474494-57474513 | None:intergenic | 25.0% |
| !! | GGGTTTGTTGTAGAATTTAA+AGG | - | chr1_2:57472200-57472219 | None:intergenic | 30.0% |
| ACCAGATCAGTTCAATATTT+AGG | + | chr1_2:57472275-57472294 | Msa0079560:intron | 30.0% | |
| CCAGATCAGTTCAATATTTA+GGG | + | chr1_2:57472276-57472295 | Msa0079560:intron | 30.0% | |
| !!! | TTTGATTTTTAGGTAAGCCA+TGG | + | chr1_2:57472340-57472359 | Msa0079560:intron | 30.0% |
| CAAACATGTCAAAAAACATG+AGG | - | chr1_2:57472566-57472585 | None:intergenic | 30.0% | |
| !!! | CTCATGTTTTTTGACATGTT+TGG | + | chr1_2:57472564-57472583 | Msa0079560:intron | 30.0% |
| CAAACAAACAATTTAAGCCA+CGG | - | chr1_2:57472657-57472676 | None:intergenic | 30.0% | |
| ! | ATTTTCTCTTGAAGAGTTGA+AGG | + | chr1_2:57472968-57472987 | Msa0079560:CDS | 30.0% |
| !! | TCTGTGTAGATGTTACTTTA+TGG | + | chr1_2:57473028-57473047 | Msa0079560:intron | 30.0% |
| !! | CTGTGTAGATGTTACTTTAT+GGG | + | chr1_2:57473029-57473048 | Msa0079560:intron | 30.0% |
| CCGAAAATAGATTAAACTGT+AGG | + | chr1_2:57473313-57473332 | Msa0079560:intron | 30.0% | |
| TACTCTCAAGTTACTAAACA+TGG | - | chr1_2:57473383-57473402 | None:intergenic | 30.0% | |
| TGCATATGACACTTAAATGA+TGG | + | chr1_2:57473495-57473514 | Msa0079560:intron | 30.0% | |
| GCATATGACACTTAAATGAT+GGG | + | chr1_2:57473496-57473515 | Msa0079560:intron | 30.0% | |
| !! | AAATGATGGGTTTATACACA+TGG | + | chr1_2:57473509-57473528 | Msa0079560:intron | 30.0% |
| ! | ATGGCTCTACACTTTAATAA+TGG | + | chr1_2:57473549-57473568 | Msa0079560:intron | 30.0% |
| ! | TGGCTCTACACTTTAATAAT+GGG | + | chr1_2:57473550-57473569 | Msa0079560:intron | 30.0% |
| AATAGCCATATGCAAAAACT+TGG | - | chr1_2:57473596-57473615 | None:intergenic | 30.0% | |
| !!! | CTAGAGTTCAAGTTTTATTC+AGG | - | chr1_2:57473665-57473684 | None:intergenic | 30.0% |
| TAGTTGAAGACTATAAAGTC+TGG | - | chr1_2:57473695-57473714 | None:intergenic | 30.0% | |
| CCTGTCATAAAAACAAAAGT+AGG | - | chr1_2:57473755-57473774 | None:intergenic | 30.0% | |
| !!! | CCTACTTTTGTTTTTATGAC+AGG | + | chr1_2:57473752-57473771 | Msa0079560:intron | 30.0% |
| TTGAGGTTCTTATATTACCT+TGG | - | chr1_2:57473931-57473950 | None:intergenic | 30.0% | |
| TAAGGTTACAGATGAAATGA+AGG | + | chr1_2:57474161-57474180 | Msa0079560:CDS | 30.0% | |
| TCATGAAACAGCTATATGAT+TGG | - | chr1_2:57474318-57474337 | None:intergenic | 30.0% | |
| GATTACTGGGCTTAGATAAT+GGG | - | chr1_2:57472151-57472170 | None:intergenic | 35.0% | |
| TGATTACTGGGCTTAGATAA+TGG | - | chr1_2:57472152-57472171 | None:intergenic | 35.0% | |
| GTGAAGGAAAATGGCAATTA+GGG | - | chr1_2:57472220-57472239 | None:intergenic | 35.0% | |
| AGTGAAGGAAAATGGCAATT+AGG | - | chr1_2:57472221-57472240 | None:intergenic | 35.0% | |
| TTGAACTGATCTGGTGAAAA+CGG | - | chr1_2:57472270-57472289 | None:intergenic | 35.0% | |
| CCCTAAATATTGAACTGATC+TGG | - | chr1_2:57472279-57472298 | None:intergenic | 35.0% | |
| !! | ACTATTCTTCGCTGATTCAA+AGG | + | chr1_2:57472311-57472330 | Msa0079560:intron | 35.0% |
| !!! | TTTTTTGACATGTTTGTCCG+TGG | + | chr1_2:57472637-57472656 | Msa0079560:intron | 35.0% |
| ! | TCTGCAGTGTCTTGAATTTT+AGG | + | chr1_2:57472717-57472736 | Msa0079560:intron | 35.0% |
| ! | AAATCTTCACTGCCTTCTTT+TGG | - | chr1_2:57472863-57472882 | None:intergenic | 35.0% |
| TTCAAGAGAAAATCCTTTCC+CGG | - | chr1_2:57472961-57472980 | None:intergenic | 35.0% | |
| !! | AGCTTGTTGAACTTTAACTG+TGG | + | chr1_2:57472997-57473016 | Msa0079560:intron | 35.0% |
| AAACTGTAGGAAAGATCGTA+CGG | + | chr1_2:57473326-57473345 | Msa0079560:intron | 35.0% | |
| GGTTTATACACATGGATGAT+GGG | + | chr1_2:57473517-57473536 | Msa0079560:intron | 35.0% | |
| !!! | GGATGATGGGTTTTTACATA+TGG | + | chr1_2:57473530-57473549 | Msa0079560:intron | 35.0% |
| ! | TGACACCAAGTTTTTGCATA+TGG | + | chr1_2:57473588-57473607 | Msa0079560:intron | 35.0% |
| TTGAAGACTATAAAGTCTGG+AGG | - | chr1_2:57473692-57473711 | None:intergenic | 35.0% | |
| CAATGATGGTATCAAAGCTA+AGG | - | chr1_2:57473981-57474000 | None:intergenic | 35.0% | |
| !! | ATTTTTATTTGTCTGCAGGC+TGG | + | chr1_2:57474048-57474067 | Msa0079560:intron | 35.0% |
| !! | TTTTTATTTGTCTGCAGGCT+GGG | + | chr1_2:57474049-57474068 | Msa0079560:intron | 35.0% |
| ACCTTAACAAGTTCAACAGT+TGG | - | chr1_2:57474147-57474166 | None:intergenic | 35.0% | |
| TTATAAACTCGGACTTCTCA+AGG | - | chr1_2:57474294-57474313 | None:intergenic | 35.0% | |
| ACATGCCAAGTCTTAAATCA+TGG | + | chr1_2:57474368-57474387 | Msa0079560:three_prime_UTR | 35.0% | |
| ! | GGAATCCATGATTTAAGACT+TGG | - | chr1_2:57474376-57474395 | None:intergenic | 35.0% |
| ! | GTACTGTCACTTAAGTTTGT+TGG | + | chr1_2:57474417-57474436 | Msa0079560:three_prime_UTR | 35.0% |
| ACGTGGTGGTAAAACTATTA+CGG | - | chr1_2:57474548-57474567 | None:intergenic | 35.0% | |
| AACATTGTTGTGCTTCACCA+TGG | - | chr1_2:57472360-57472379 | None:intergenic | 40.0% | |
| !! | GCTTACGGAAGTGTTCATTT+GGG | - | chr1_2:57472385-57472404 | None:intergenic | 40.0% |
| !! | TGCTTACGGAAGTGTTCATT+TGG | - | chr1_2:57472386-57472405 | None:intergenic | 40.0% |
| ATGAACACTTCCGTAAGCAT+TGG | + | chr1_2:57472387-57472406 | Msa0079560:CDS | 40.0% | |
| ! | CATAGTTCTGCCAATGCTTA+CGG | - | chr1_2:57472400-57472419 | None:intergenic | 40.0% |
| GGCAGAACTATGTCAAAACA+TGG | + | chr1_2:57472408-57472427 | Msa0079560:CDS | 40.0% | |
| TACAACATGAAACTTCGTGC+CGG | + | chr1_2:57472939-57472958 | Msa0079560:CDS | 40.0% | |
| ATGGGCTTGTAGATTTGTGT+TGG | + | chr1_2:57473047-57473066 | Msa0079560:intron | 40.0% | |
| !! | GCAGGGATGCTTATTTTCAT+AGG | - | chr1_2:57473135-57473154 | None:intergenic | 40.0% |
| GGGTTTATACACATGGATGA+TGG | + | chr1_2:57473516-57473535 | Msa0079560:intron | 40.0% | |
| !!! | TTGTTTTTATGACAGGCTGC+CGG | + | chr1_2:57473759-57473778 | Msa0079560:intron | 40.0% |
| TCAACAGAAATGCCAATGGT+TGG | - | chr1_2:57473804-57473823 | None:intergenic | 40.0% | |
| ATGGTCAACAGAAATGCCAA+TGG | - | chr1_2:57473808-57473827 | None:intergenic | 40.0% | |
| GAAAACATACAAGGCCAAGT+TGG | + | chr1_2:57473878-57473897 | Msa0079560:CDS | 40.0% | |
| TTGATACCATCATTGCTGCT+AGG | + | chr1_2:57473986-57474005 | Msa0079560:intron | 40.0% | |
| TGATACCATCATTGCTGCTA+GGG | + | chr1_2:57473987-57474006 | Msa0079560:intron | 40.0% | |
| ATTGCTGCTAGGGTTGAAAT+AGG | + | chr1_2:57473997-57474016 | Msa0079560:intron | 40.0% | |
| !! | TTTTATTTGTCTGCAGGCTG+GGG | + | chr1_2:57474050-57474069 | Msa0079560:intron | 40.0% |
| ! | ATCATACTTGCCGATTGTGA+GGG | + | chr1_2:57474116-57474135 | Msa0079560:CDS | 40.0% |
| !! | GCCAACTGTTGAACTTGTTA+AGG | + | chr1_2:57474143-57474162 | Msa0079560:CDS | 40.0% |
| CATGGTTCAATCAACCAGCT+AGG | + | chr1_2:57472426-57472445 | Msa0079560:CDS | 45.0% | |
| GGGCTACAAAAATCACAGCA+CGG | - | chr1_2:57472839-57472858 | None:intergenic | 45.0% | |
| ! | TTTTGTAGCCCGCCAAAAGA+AGG | + | chr1_2:57472848-57472867 | Msa0079560:intron | 45.0% |
| ! | TCTTCACTGCCTTCTTTTGG+CGG | - | chr1_2:57472860-57472879 | None:intergenic | 45.0% |
| !! | CCTTTGAGGCCAATTGTTCA+CGG | + | chr1_2:57472903-57472922 | Msa0079560:CDS | 45.0% |
| GCAGTTTGACCGTGAACAAT+TGG | - | chr1_2:57472915-57472934 | None:intergenic | 45.0% | |
| ACAACATGAAACTTCGTGCC+GGG | + | chr1_2:57472940-57472959 | Msa0079560:CDS | 45.0% | |
| ATGGTTGGAGCAAGCTTCTT+GGG | - | chr1_2:57473789-57473808 | None:intergenic | 45.0% | |
| AATGGTTGGAGCAAGCTTCT+TGG | - | chr1_2:57473790-57473809 | None:intergenic | 45.0% | |
| ! | AAGAAGCTTGCTCCAACCAT+TGG | + | chr1_2:57473789-57473808 | Msa0079560:CDS | 45.0% |
| GCAGAGGCTGAAAACATACA+AGG | + | chr1_2:57473869-57473888 | Msa0079560:CDS | 45.0% | |
| CCTTGGGAAAACAACCAACT+TGG | - | chr1_2:57473895-57473914 | None:intergenic | 45.0% | |
| !!! | CCAAGTTGGTTGTTTTCCCA+AGG | + | chr1_2:57473892-57473911 | Msa0079560:CDS | 45.0% |
| TTCAACCCTAGCAGCAATGA+TGG | - | chr1_2:57473995-57474014 | None:intergenic | 45.0% | |
| GTATGATCCTTGGACTTGTG+TGG | - | chr1_2:57474103-57474122 | None:intergenic | 45.0% | |
| CAATCGGCAAGTATGATCCT+TGG | - | chr1_2:57474113-57474132 | None:intergenic | 45.0% | |
| ! | GATCATACTTGCCGATTGTG+AGG | + | chr1_2:57474115-57474134 | Msa0079560:CDS | 45.0% |
| TGGCGGCAAGTGAAGGAAAA+TGG | - | chr1_2:57472229-57472248 | None:intergenic | 50.0% | |
| ATCAACCAGCTAGGAAGACC+AGG | + | chr1_2:57472435-57472454 | Msa0079560:CDS | 50.0% | |
| GTAATTACCCAAGCGTCTCC+TGG | - | chr1_2:57472456-57472475 | None:intergenic | 50.0% | |
| ! | CTTCACTGCCTTCTTTTGGC+GGG | - | chr1_2:57472859-57472878 | None:intergenic | 50.0% |
| ! | AGGCAGTGAAGATTTTCCCC+CGG | + | chr1_2:57472868-57472887 | Msa0079560:CDS | 50.0% |
| ! | AATTGGCCTCAAAGGTCCAG+CGG | - | chr1_2:57472898-57472917 | None:intergenic | 50.0% |
| ! | CCGTGAACAATTGGCCTCAA+AGG | - | chr1_2:57472906-57472925 | None:intergenic | 50.0% |
| ATGAAACTTCGTGCCGGGAA+AGG | + | chr1_2:57472945-57472964 | Msa0079560:CDS | 50.0% | |
| AGCAAGCTTCTTGGGGATAC+CGG | - | chr1_2:57473781-57473800 | None:intergenic | 50.0% | |
| TGGTTGGAGCAAGCTTCTTG+GGG | - | chr1_2:57473788-57473807 | None:intergenic | 50.0% | |
| CCTCCAAAGAACGGTTCTTG+CGG | - | chr1_2:57473833-57473852 | None:intergenic | 50.0% | |
| CGCAAGAACCGTTCTTTGGA+GGG | + | chr1_2:57473831-57473850 | Msa0079560:CDS | 50.0% | |
| CTTGCAGACCCTCCAAAGAA+CGG | - | chr1_2:57473842-57473861 | None:intergenic | 50.0% | |
| GTCTGCAAGCTAATGTGCAG+AGG | + | chr1_2:57473853-57473872 | Msa0079560:CDS | 50.0% | |
| GTGGCATTAGCAAGTTCCTC+AGG | - | chr1_2:57474084-57474103 | None:intergenic | 50.0% | |
| GCTAATGCCACACAAGTCCA+AGG | + | chr1_2:57474093-57474112 | Msa0079560:CDS | 50.0% | |
| ! | GTTGGCTTCTCCCTCACAAT+CGG | - | chr1_2:57474129-57474148 | None:intergenic | 50.0% |
| CGCACCAACAAGCGTCATTT+GGG | + | chr1_2:57474216-57474235 | Msa0079560:CDS | 50.0% | |
| AGCACCCAAATGACGCTTGT+TGG | - | chr1_2:57474223-57474242 | None:intergenic | 50.0% | |
| ACAAGCGTCATTTGGGTGCT+AGG | + | chr1_2:57474223-57474242 | Msa0079560:CDS | 50.0% | |
| ATTTGGGTGCTAGGCTCAAG+AGG | + | chr1_2:57474232-57474251 | Msa0079560:CDS | 50.0% | |
| TTTGGGTGCTAGGCTCAAGA+GGG | + | chr1_2:57474233-57474252 | Msa0079560:CDS | 50.0% | |
| TGGTGAAAACGGCAGCACCT+GGG | - | chr1_2:57472259-57472278 | None:intergenic | 55.0% | |
| TAGGAAGACCAGGAGACGCT+TGG | + | chr1_2:57472445-57472464 | Msa0079560:CDS | 55.0% | |
| AGGAAGACCAGGAGACGCTT+GGG | + | chr1_2:57472446-57472465 | Msa0079560:CDS | 55.0% | |
| AAGAACGGTTCTTGCGGCGA+TGG | - | chr1_2:57473827-57473846 | None:intergenic | 55.0% | |
| TCGCCGCAAGAACCGTTCTT+TGG | + | chr1_2:57473827-57473846 | Msa0079560:CDS | 55.0% | |
| CCGCAAGAACCGTTCTTTGG+AGG | + | chr1_2:57473830-57473849 | Msa0079560:CDS | 55.0% | |
| GCGCACCAACAAGCGTCATT+TGG | + | chr1_2:57474215-57474234 | Msa0079560:CDS | 55.0% | |
| ! | AGAGAGGTGGCGGCAAGTGA+AGG | - | chr1_2:57472236-57472255 | None:intergenic | 60.0% |
| CTGGTGAAAACGGCAGCACC+TGG | - | chr1_2:57472260-57472279 | None:intergenic | 60.0% | |
| ! | CGTCTCCTGGTCTTCCTAGC+TGG | - | chr1_2:57472443-57472462 | None:intergenic | 60.0% |
| TCAAAGGTCCAGCGGTTGGC+CGG | - | chr1_2:57472890-57472909 | None:intergenic | 60.0% | |
| ! | GACGCTTGTTGGTGCGCTCA+AGG | - | chr1_2:57474212-57474231 | None:intergenic | 60.0% |
| TAGGCTCAAGAGGGCTGCTG+AGG | + | chr1_2:57474242-57474261 | Msa0079560:CDS | 60.0% | |
| GAGGGCTGCTGAGGCAGAAA+AGG | + | chr1_2:57474251-57474270 | Msa0079560:CDS | 60.0% | |
| AGCACCTGGGAGAGAGGTGG+CGG | - | chr1_2:57472246-57472265 | None:intergenic | 65.0% | |
| AACGGCAGCACCTGGGAGAG+AGG | - | chr1_2:57472252-57472271 | None:intergenic | 65.0% | |
| ! | ATTTTCCCCCGGCCAACCGC+TGG | + | chr1_2:57472879-57472898 | Msa0079560:CDS | 65.0% |
| ! | AAAGGTCCAGCGGTTGGCCG+GGG | - | chr1_2:57472888-57472907 | None:intergenic | 65.0% |
| ! | CAAAGGTCCAGCGGTTGGCC+GGG | - | chr1_2:57472889-57472908 | None:intergenic | 65.0% |
| GGCCAACCGCTGGACCTTTG+AGG | + | chr1_2:57472889-57472908 | Msa0079560:CDS | 65.0% | |
| GGCCTCAAAGGTCCAGCGGT+TGG | - | chr1_2:57472894-57472913 | None:intergenic | 65.0% | |
| ! | TGGTCTTGCGTGCGCGCCTT+GGG | - | chr1_2:57473911-57473930 | None:intergenic | 65.0% |
| !! | TTGGTCTTGCGTGCGCGCCT+TGG | - | chr1_2:57473912-57473931 | None:intergenic | 65.0% |
| AAGGCGCGCACGCAAGACCA+AGG | + | chr1_2:57473911-57473930 | Msa0079560:CDS | 65.0% | |
| GGCTGGGGACTCTACACCTG+AGG | + | chr1_2:57474065-57474084 | Msa0079560:intron | 65.0% | |
| CTTGCCGCCACCTCTCTCCC+AGG | + | chr1_2:57472239-57472258 | Msa0079560:five_prime_UTR | 70.0% | |
| GGCAGCACCTGGGAGAGAGG+TGG | - | chr1_2:57472249-57472268 | None:intergenic | 70.0% | |
| ! | AAGGTCCAGCGGTTGGCCGG+GGG | - | chr1_2:57472887-57472906 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 57472096 | 57474576 | 57472096 | ID=Msa0079560;Name=Msa0079560 |
| chr1_2 | mRNA | 57472096 | 57474576 | 57472096 | ID=Msa0079560-mRNA-1;Parent=Msa0079560;Name=Msa0079560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=172|1|1|1|0.75|0.6|5|289|207 |
| chr1_2 | exon | 57472096 | 57472260 | 57472096 | ID=Msa0079560-mRNA-1:exon:18160;Parent=Msa0079560-mRNA-1 |
| chr1_2 | exon | 57472352 | 57472467 | 57472352 | ID=Msa0079560-mRNA-1:exon:18161;Parent=Msa0079560-mRNA-1 |
| chr1_2 | exon | 57472856 | 57472989 | 57472856 | ID=Msa0079560-mRNA-1:exon:18162;Parent=Msa0079560-mRNA-1 |
| chr1_2 | exon | 57473774 | 57473932 | 57473774 | ID=Msa0079560-mRNA-1:exon:18163;Parent=Msa0079560-mRNA-1 |
| chr1_2 | exon | 57474066 | 57474576 | 57474066 | ID=Msa0079560-mRNA-1:exon:18164;Parent=Msa0079560-mRNA-1 |
| chr1_2 | five_prime_UTR | 57472096 | 57472260 | 57472096 | ID=Msa0079560-mRNA-1:five_prime_utr;Parent=Msa0079560-mRNA-1 |
| chr1_2 | five_prime_UTR | 57472352 | 57472358 | 57472352 | ID=Msa0079560-mRNA-1:five_prime_utr;Parent=Msa0079560-mRNA-1 |
| chr1_2 | CDS | 57472359 | 57472467 | 57472359 | ID=Msa0079560-mRNA-1:cds;Parent=Msa0079560-mRNA-1 |
| chr1_2 | CDS | 57472856 | 57472989 | 57472856 | ID=Msa0079560-mRNA-1:cds;Parent=Msa0079560-mRNA-1 |
| chr1_2 | CDS | 57473774 | 57473932 | 57473774 | ID=Msa0079560-mRNA-1:cds;Parent=Msa0079560-mRNA-1 |
| chr1_2 | CDS | 57474066 | 57474287 | 57474066 | ID=Msa0079560-mRNA-1:cds;Parent=Msa0079560-mRNA-1 |
| chr1_2 | three_prime_UTR | 57474288 | 57474576 | 57474288 | ID=Msa0079560-mRNA-1:three_prime_utr;Parent=Msa0079560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
