Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210120 | sp|Q5EA79|GALM_BOVIN | 43.802 | 121 | 66 | 1 | 34 | 154 | 22 | 140 | 8.49e-27 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210120 | G7JQX4 | 92.638 | 163 | 8 | 1 | 1 | 159 | 1 | 163 | 2.50e-93 | 284 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0663910 | Msa1210120 | 0.822666 | 2.096576e-53 | -8.615850e-47 |
| Msa0126520 | Msa1210120 | 0.817320 | 3.505291e-52 | -8.615850e-47 |
| Msa1070390 | Msa1210120 | 0.805245 | 1.464812e-49 | -8.615850e-47 |
| Msa0262480 | Msa1210120 | 0.821010 | 5.067981e-53 | -8.615850e-47 |
| Msa0300350 | Msa1210120 | 0.800506 | 1.396042e-48 | -8.615850e-47 |
| Msa1210120 | Msa1211750 | 0.817804 | 2.726870e-52 | -8.615850e-47 |
| Msa1210120 | Msa1299570 | 0.834174 | 3.490021e-56 | -8.615850e-47 |
| Msa1210120 | Msa1299630 | 0.830951 | 2.198675e-55 | -8.615850e-47 |
| Msa1210120 | Msa1461570 | 0.814243 | 1.700940e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210120 | MtrunA17_Chr4g0060521 | 92.638 | 163 | 8 | 1 | 1 | 159 | 1 | 163 | 9.57e-97 | 284 |
| Msa1210120 | MtrunA17_Chr7g0217021 | 55.063 | 158 | 66 | 2 | 7 | 159 | 4 | 161 | 5.86e-56 | 180 |
| Msa1210120 | MtrunA17_Chr6g0452991 | 49.057 | 159 | 76 | 3 | 1 | 154 | 1 | 159 | 1.82e-46 | 155 |
| Msa1210120 | MtrunA17_Chr6g0452971 | 47.170 | 159 | 79 | 3 | 1 | 154 | 1 | 159 | 5.44e-44 | 149 |
| Msa1210120 | MtrunA17_Chr6g0478501 | 42.857 | 154 | 81 | 3 | 25 | 171 | 2 | 155 | 1.41e-32 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210120 | AT5G15140.1 | 58.779 | 131 | 51 | 1 | 27 | 154 | 156 | 286 | 5.80e-47 | 160 |
| Msa1210120 | AT3G47800.1 | 54.331 | 127 | 58 | 0 | 28 | 154 | 28 | 154 | 2.40e-44 | 150 |
| Msa1210120 | AT3G17940.1 | 47.887 | 142 | 67 | 4 | 33 | 167 | 11 | 152 | 3.18e-37 | 131 |
| Msa1210120 | AT3G01260.1 | 41.463 | 123 | 57 | 3 | 34 | 152 | 122 | 233 | 7.87e-21 | 88.6 |
Find 48 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTCTAATCTACGTTTA+AGG | 0.102925 | 8_1:-68885121 | None:intergenic |
| TAATCTACGTTTAAGGTTAT+TGG | 0.113160 | 8_1:-68885114 | None:intergenic |
| CGTTATCACCGAACCCTTTC+TGG | 0.147008 | 8_1:-68886017 | None:intergenic |
| GTCTACTTCGGTGGTCTTAT+TGG | 0.151365 | 8_1:+68885778 | Msa1210120:CDS |
| TGTTGCTGCGACTGCGTTTA+AGG | 0.253959 | 8_1:+68886225 | Msa1210120:CDS |
| TAAGGTTATTGGATAAGTTT+AGG | 0.303289 | 8_1:-68885103 | None:intergenic |
| TCTACTTCGGTGGTCTTATT+GGG | 0.313290 | 8_1:+68885779 | Msa1210120:CDS |
| GTTCTACATATATATCTCTA+TGG | 0.335584 | 8_1:+68885178 | Msa1210120:five_prime_UTR |
| TTGTGTCCTCTTGGGGCTCC+TGG | 0.337282 | 8_1:+68885276 | Msa1210120:CDS |
| CAAGAGGACACAAAATAATA+AGG | 0.338110 | 8_1:-68885266 | None:intergenic |
| GAAATTGGCCCCACAAAATT+CGG | 0.350538 | 8_1:-68885147 | None:intergenic |
| CAAGACAAACCATGTTTATC+AGG | 0.353823 | 8_1:-68885424 | None:intergenic |
| GTAGAACTGAAGGAGGAAAT+TGG | 0.358714 | 8_1:-68885162 | None:intergenic |
| AGGGTTAATTTGACAAACTA+TGG | 0.390776 | 8_1:+68885376 | Msa1210120:CDS |
| AGTGAGAAAAGTGAGAAGAT+TGG | 0.391101 | 8_1:+68885325 | Msa1210120:CDS |
| TTATTGGGCGTGTGGCAAAT+AGG | 0.397686 | 8_1:+68885794 | Msa1210120:CDS |
| AAAGTGGCTGATGTTGTTCT+TGG | 0.422078 | 8_1:+68885527 | Msa1210120:CDS |
| GAAATTGCAGGTGGCCAGAA+AGG | 0.457841 | 8_1:+68886003 | Msa1210120:intron |
| AAATTGCCAGCTAATGATCA+TGG | 0.472562 | 8_1:+68885856 | Msa1210120:CDS |
| TGGAGGAGCTCAATTCACTT+TGG | 0.490944 | 8_1:+68885819 | Msa1210120:CDS |
| GCAGGTGGCCAGAAAGGGTT+CGG | 0.495854 | 8_1:+68886009 | Msa1210120:intron |
| GGAGCTCAATTCACTTTGGA+TGG | 0.518150 | 8_1:+68885823 | Msa1210120:CDS |
| GGGCGTGTGGCAAATAGGAT+TGG | 0.526639 | 8_1:+68885799 | Msa1210120:CDS |
| AAGGGTTCGGTGATAACGTA+TGG | 0.530622 | 8_1:+68886022 | Msa1210120:CDS |
| TGATTCCATTGAGCAATATG+AGG | 0.542382 | 8_1:+68885553 | Msa1210120:CDS |
| TATATATGTAGAACTGAAGG+AGG | 0.543464 | 8_1:-68885169 | None:intergenic |
| GTGTTCCCATGATCATTAGC+TGG | 0.546884 | 8_1:-68885862 | None:intergenic |
| AAATTGCAGGTGGCCAGAAA+GGG | 0.548265 | 8_1:+68886004 | Msa1210120:intron |
| TCATACCTCATATTGCTCAA+TGG | 0.551688 | 8_1:-68885558 | None:intergenic |
| CAAAGAATCGTATACAAATG+AGG | 0.553465 | 8_1:-68886257 | None:intergenic |
| TGAAATTTGATGCAGACTGA+TGG | 0.555921 | 8_1:+68885754 | Msa1210120:intron |
| CGGTGGTCTTATTGGGCGTG+TGG | 0.557522 | 8_1:+68885786 | Msa1210120:CDS |
| AGATATATATGTAGAACTGA+AGG | 0.560239 | 8_1:-68885172 | None:intergenic |
| CGTGTGGCAAATAGGATTGG+AGG | 0.564047 | 8_1:+68885802 | Msa1210120:CDS |
| GAGAAATAATTGTTCAACAA+TGG | 0.565502 | 8_1:+68885234 | Msa1210120:exon |
| TAATTGTTCAACAATGGCTA+AGG | 0.569688 | 8_1:+68885240 | Msa1210120:exon |
| GATCATGGGAACACACTCCA+TGG | 0.584348 | 8_1:+68885871 | Msa1210120:CDS |
| GTATACAAATGAGGCTGATG+TGG | 0.589532 | 8_1:-68886248 | None:intergenic |
| AATTGCCAGCTAATGATCAT+GGG | 0.589702 | 8_1:+68885857 | Msa1210120:CDS |
| CAGACTGATGGAGTCTACTT+CGG | 0.614831 | 8_1:+68885766 | Msa1210120:intron |
| GTTTATGTACCTGATAAACA+TGG | 0.622676 | 8_1:+68885415 | Msa1210120:CDS |
| TTCACCATCAAAACTGTGGT+AGG | 0.630989 | 8_1:-68886085 | None:intergenic |
| AATGTGCATAAGTGTGAACC+AGG | 0.665476 | 8_1:-68885294 | None:intergenic |
| ACTGATGGAGTCTACTTCGG+TGG | 0.669276 | 8_1:+68885769 | Msa1210120:CDS |
| CTTGTTCACCATCAAAACTG+TGG | 0.689661 | 8_1:-68886089 | None:intergenic |
| ATGGAAAGTAGCAGTTCACA+AGG | 0.691394 | 8_1:+68886041 | Msa1210120:CDS |
| TGTGAACCAGGAGCCCCAAG+AGG | 0.695938 | 8_1:-68885282 | None:intergenic |
| ATAAGTTTAGGATTTCAACA+AGG | 0.716453 | 8_1:-68885091 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTATATAAATATTAATG+TGG | - | chr8_1:68885483-68885502 | None:intergenic | 10.0% |
| !! | AAGTTATATAAATATTAATG+TGG | - | chr8_1:68885483-68885502 | None:intergenic | 10.0% |
| !! | TAAATATTAATGTGGAATAA+GGG | - | chr8_1:68885475-68885494 | None:intergenic | 15.0% |
| !! | ATAAATATTAATGTGGAATA+AGG | - | chr8_1:68885476-68885495 | None:intergenic | 15.0% |
| !! | TACTATATATAAGAGAAAAT+TGG | + | chr8_1:68885674-68885693 | Msa1210120:intron | 15.0% |
| !! | GAATAGTTAAATTATATATG+TGG | - | chr8_1:68886143-68886162 | None:intergenic | 15.0% |
| !! | TAAATATTAATGTGGAATAA+GGG | - | chr8_1:68885475-68885494 | None:intergenic | 15.0% |
| !! | ATAAATATTAATGTGGAATA+AGG | - | chr8_1:68885476-68885495 | None:intergenic | 15.0% |
| !! | TACTATATATAAGAGAAAAT+TGG | + | chr8_1:68885674-68885693 | Msa1210120:intron | 15.0% |
| !! | GAATAGTTAAATTATATATG+TGG | - | chr8_1:68886143-68886162 | None:intergenic | 15.0% |
| !!! | GGATTTTATGAGTTAAAAAA+AGG | + | chr8_1:68885346-68885365 | Msa1210120:CDS | 20.0% |
| !!! | TTTTTTTTATTCACTTTTCC+AGG | + | chr8_1:68885503-68885522 | Msa1210120:intron | 20.0% |
| !!! | TTTTTTTATTCACTTTTCCA+GGG | + | chr8_1:68885504-68885523 | Msa1210120:intron | 20.0% |
| !! | ATATTAATATTAACGTACCA+TGG | - | chr8_1:68885891-68885910 | None:intergenic | 20.0% |
| !! | GTTTCTGATAAATAATTTAC+AGG | + | chr8_1:68885917-68885936 | Msa1210120:intron | 20.0% |
| !!! | GGATTTTATGAGTTAAAAAA+AGG | + | chr8_1:68885346-68885365 | Msa1210120:CDS | 20.0% |
| !!! | TTTTTTTTATTCACTTTTCC+AGG | + | chr8_1:68885503-68885522 | Msa1210120:intron | 20.0% |
| !!! | TTTTTTTATTCACTTTTCCA+GGG | + | chr8_1:68885504-68885523 | Msa1210120:intron | 20.0% |
| !! | ATATTAATATTAACGTACCA+TGG | - | chr8_1:68885891-68885910 | None:intergenic | 20.0% |
| !! | GTTTCTGATAAATAATTTAC+AGG | + | chr8_1:68885917-68885936 | Msa1210120:intron | 20.0% |
| !! | ATAAGTTTAGGATTTCAACA+AGG | - | chr8_1:68885094-68885113 | None:intergenic | 25.0% |
| ! | TAAGGTTATTGGATAAGTTT+AGG | - | chr8_1:68885106-68885125 | None:intergenic | 25.0% |
| !! | TAATCTACGTTTAAGGTTAT+TGG | - | chr8_1:68885117-68885136 | None:intergenic | 25.0% |
| ! | AACTTTCTAATCTACGTTTA+AGG | - | chr8_1:68885124-68885143 | None:intergenic | 25.0% |
| !! | AAAGTTAATCCGAATTTTGT+GGG | + | chr8_1:68885138-68885157 | Msa1210120:five_prime_UTR | 25.0% |
| ! | AGATATATATGTAGAACTGA+AGG | - | chr8_1:68885175-68885194 | None:intergenic | 25.0% |
| ! | GTTCTACATATATATCTCTA+TGG | + | chr8_1:68885178-68885197 | Msa1210120:five_prime_UTR | 25.0% |
| ! | GAGAAATAATTGTTCAACAA+TGG | + | chr8_1:68885234-68885253 | Msa1210120:exon | 25.0% |
| !!! | TTATTATTTTGTGTCCTCTT+GGG | + | chr8_1:68885268-68885287 | Msa1210120:CDS | 25.0% |
| !! | AGTTAAAAAAAGGAAGTATG+AGG | + | chr8_1:68885356-68885375 | Msa1210120:CDS | 25.0% |
| !! | GTTAAAAAAAGGAAGTATGA+GGG | + | chr8_1:68885357-68885376 | Msa1210120:CDS | 25.0% |
| ! | TTAATCATTGATGAAATTGC+AGG | + | chr8_1:68885991-68886010 | Msa1210120:intron | 25.0% |
| ! | AGTTAAATTATATATGTGGC+AGG | - | chr8_1:68886139-68886158 | None:intergenic | 25.0% |
| !! | ATAAGTTTAGGATTTCAACA+AGG | - | chr8_1:68885094-68885113 | None:intergenic | 25.0% |
| ! | TAAGGTTATTGGATAAGTTT+AGG | - | chr8_1:68885106-68885125 | None:intergenic | 25.0% |
| !! | TAATCTACGTTTAAGGTTAT+TGG | - | chr8_1:68885117-68885136 | None:intergenic | 25.0% |
| ! | AACTTTCTAATCTACGTTTA+AGG | - | chr8_1:68885124-68885143 | None:intergenic | 25.0% |
| !! | AAAGTTAATCCGAATTTTGT+GGG | + | chr8_1:68885138-68885157 | Msa1210120:five_prime_UTR | 25.0% |
| ! | AGATATATATGTAGAACTGA+AGG | - | chr8_1:68885175-68885194 | None:intergenic | 25.0% |
| ! | GTTCTACATATATATCTCTA+TGG | + | chr8_1:68885178-68885197 | Msa1210120:five_prime_UTR | 25.0% |
| ! | GAGAAATAATTGTTCAACAA+TGG | + | chr8_1:68885234-68885253 | Msa1210120:exon | 25.0% |
| !!! | TTATTATTTTGTGTCCTCTT+GGG | + | chr8_1:68885268-68885287 | Msa1210120:CDS | 25.0% |
| !! | AGTTAAAAAAAGGAAGTATG+AGG | + | chr8_1:68885356-68885375 | Msa1210120:CDS | 25.0% |
| !! | GTTAAAAAAAGGAAGTATGA+GGG | + | chr8_1:68885357-68885376 | Msa1210120:CDS | 25.0% |
| ! | TTAATCATTGATGAAATTGC+AGG | + | chr8_1:68885991-68886010 | Msa1210120:intron | 25.0% |
| ! | AGTTAAATTATATATGTGGC+AGG | - | chr8_1:68886139-68886158 | None:intergenic | 25.0% |
| ! | GAAAGTTAATCCGAATTTTG+TGG | + | chr8_1:68885137-68885156 | Msa1210120:five_prime_UTR | 30.0% |
| ! | AAGTTAATCCGAATTTTGTG+GGG | + | chr8_1:68885139-68885158 | Msa1210120:five_prime_UTR | 30.0% |
| TATATATGTAGAACTGAAGG+AGG | - | chr8_1:68885172-68885191 | None:intergenic | 30.0% | |
| TAATTGTTCAACAATGGCTA+AGG | + | chr8_1:68885240-68885259 | Msa1210120:exon | 30.0% | |
| CAAGAGGACACAAAATAATA+AGG | - | chr8_1:68885269-68885288 | None:intergenic | 30.0% | |
| !! | CTTATTATTTTGTGTCCTCT+TGG | + | chr8_1:68885267-68885286 | Msa1210120:CDS | 30.0% |
| !! | TATTATTTTGTGTCCTCTTG+GGG | + | chr8_1:68885269-68885288 | Msa1210120:CDS | 30.0% |
| ! | AGGGTTAATTTGACAAACTA+TGG | + | chr8_1:68885376-68885395 | Msa1210120:CDS | 30.0% |
| GTTTATGTACCTGATAAACA+TGG | + | chr8_1:68885415-68885434 | Msa1210120:CDS | 30.0% | |
| CAAAGAATCGTATACAAATG+AGG | - | chr8_1:68886260-68886279 | None:intergenic | 30.0% | |
| ! | GAAAGTTAATCCGAATTTTG+TGG | + | chr8_1:68885137-68885156 | Msa1210120:five_prime_UTR | 30.0% |
| ! | AAGTTAATCCGAATTTTGTG+GGG | + | chr8_1:68885139-68885158 | Msa1210120:five_prime_UTR | 30.0% |
| TATATATGTAGAACTGAAGG+AGG | - | chr8_1:68885172-68885191 | None:intergenic | 30.0% | |
| TAATTGTTCAACAATGGCTA+AGG | + | chr8_1:68885240-68885259 | Msa1210120:exon | 30.0% | |
| CAAGAGGACACAAAATAATA+AGG | - | chr8_1:68885269-68885288 | None:intergenic | 30.0% | |
| !! | CTTATTATTTTGTGTCCTCT+TGG | + | chr8_1:68885267-68885286 | Msa1210120:CDS | 30.0% |
| !! | TATTATTTTGTGTCCTCTTG+GGG | + | chr8_1:68885269-68885288 | Msa1210120:CDS | 30.0% |
| ! | AGGGTTAATTTGACAAACTA+TGG | + | chr8_1:68885376-68885395 | Msa1210120:CDS | 30.0% |
| GTTTATGTACCTGATAAACA+TGG | + | chr8_1:68885415-68885434 | Msa1210120:CDS | 30.0% | |
| CAAAGAATCGTATACAAATG+AGG | - | chr8_1:68886260-68886279 | None:intergenic | 30.0% | |
| AGTGAGAAAAGTGAGAAGAT+TGG | + | chr8_1:68885325-68885344 | Msa1210120:CDS | 35.0% | |
| CAAGACAAACCATGTTTATC+AGG | - | chr8_1:68885427-68885446 | None:intergenic | 35.0% | |
| TGATTCCATTGAGCAATATG+AGG | + | chr8_1:68885553-68885572 | Msa1210120:CDS | 35.0% | |
| TCATACCTCATATTGCTCAA+TGG | - | chr8_1:68885561-68885580 | None:intergenic | 35.0% | |
| ! | GGATCAATAGTTGATGCATT+TGG | + | chr8_1:68885695-68885714 | Msa1210120:intron | 35.0% |
| ! | ATGCATTTGGTTCAAATCGT+GGG | + | chr8_1:68885708-68885727 | Msa1210120:intron | 35.0% |
| TGAAATTTGATGCAGACTGA+TGG | + | chr8_1:68885754-68885773 | Msa1210120:intron | 35.0% | |
| AAATTGCCAGCTAATGATCA+TGG | + | chr8_1:68885856-68885875 | Msa1210120:CDS | 35.0% | |
| AATTGCCAGCTAATGATCAT+GGG | + | chr8_1:68885857-68885876 | Msa1210120:CDS | 35.0% | |
| ATCATTGATGAAATTGCAGG+TGG | + | chr8_1:68885994-68886013 | Msa1210120:intron | 35.0% | |
| !! | TTTACCTACCACAGTTTTGA+TGG | + | chr8_1:68886081-68886100 | Msa1210120:CDS | 35.0% |
| AGTGAGAAAAGTGAGAAGAT+TGG | + | chr8_1:68885325-68885344 | Msa1210120:CDS | 35.0% | |
| CAAGACAAACCATGTTTATC+AGG | - | chr8_1:68885427-68885446 | None:intergenic | 35.0% | |
| TGATTCCATTGAGCAATATG+AGG | + | chr8_1:68885553-68885572 | Msa1210120:CDS | 35.0% | |
| TCATACCTCATATTGCTCAA+TGG | - | chr8_1:68885561-68885580 | None:intergenic | 35.0% | |
| ! | GGATCAATAGTTGATGCATT+TGG | + | chr8_1:68885695-68885714 | Msa1210120:intron | 35.0% |
| ! | ATGCATTTGGTTCAAATCGT+GGG | + | chr8_1:68885708-68885727 | Msa1210120:intron | 35.0% |
| TGAAATTTGATGCAGACTGA+TGG | + | chr8_1:68885754-68885773 | Msa1210120:intron | 35.0% | |
| AAATTGCCAGCTAATGATCA+TGG | + | chr8_1:68885856-68885875 | Msa1210120:CDS | 35.0% | |
| AATTGCCAGCTAATGATCAT+GGG | + | chr8_1:68885857-68885876 | Msa1210120:CDS | 35.0% | |
| ATCATTGATGAAATTGCAGG+TGG | + | chr8_1:68885994-68886013 | Msa1210120:intron | 35.0% | |
| !! | TTTACCTACCACAGTTTTGA+TGG | + | chr8_1:68886081-68886100 | Msa1210120:CDS | 35.0% |
| GAAATTGGCCCCACAAAATT+CGG | - | chr8_1:68885150-68885169 | None:intergenic | 40.0% | |
| GTAGAACTGAAGGAGGAAAT+TGG | - | chr8_1:68885165-68885184 | None:intergenic | 40.0% | |
| AATGTGCATAAGTGTGAACC+AGG | - | chr8_1:68885297-68885316 | None:intergenic | 40.0% | |
| !! | ATTCACTTTTCCAGGGAAAG+TGG | + | chr8_1:68885511-68885530 | Msa1210120:intron | 40.0% |
| AAAGTGGCTGATGTTGTTCT+TGG | + | chr8_1:68885527-68885546 | Msa1210120:CDS | 40.0% | |
| ! | GATGCATTTGGTTCAAATCG+TGG | + | chr8_1:68885707-68885726 | Msa1210120:intron | 40.0% |
| !! | TCTACTTCGGTGGTCTTATT+GGG | + | chr8_1:68885779-68885798 | Msa1210120:CDS | 40.0% |
| ATGGAAAGTAGCAGTTCACA+AGG | + | chr8_1:68886041-68886060 | Msa1210120:CDS | 40.0% | |
| TTCACCATCAAAACTGTGGT+AGG | - | chr8_1:68886088-68886107 | None:intergenic | 40.0% | |
| CTTGTTCACCATCAAAACTG+TGG | - | chr8_1:68886092-68886111 | None:intergenic | 40.0% | |
| !!! | CACAGTTTTGATGGTGAACA+AGG | + | chr8_1:68886090-68886109 | Msa1210120:CDS | 40.0% |
| GTATACAAATGAGGCTGATG+TGG | - | chr8_1:68886251-68886270 | None:intergenic | 40.0% | |
| GAAATTGGCCCCACAAAATT+CGG | - | chr8_1:68885150-68885169 | None:intergenic | 40.0% | |
| GTAGAACTGAAGGAGGAAAT+TGG | - | chr8_1:68885165-68885184 | None:intergenic | 40.0% | |
| AATGTGCATAAGTGTGAACC+AGG | - | chr8_1:68885297-68885316 | None:intergenic | 40.0% | |
| !! | ATTCACTTTTCCAGGGAAAG+TGG | + | chr8_1:68885511-68885530 | Msa1210120:intron | 40.0% |
| AAAGTGGCTGATGTTGTTCT+TGG | + | chr8_1:68885527-68885546 | Msa1210120:CDS | 40.0% | |
| ! | GATGCATTTGGTTCAAATCG+TGG | + | chr8_1:68885707-68885726 | Msa1210120:intron | 40.0% |
| !! | TCTACTTCGGTGGTCTTATT+GGG | + | chr8_1:68885779-68885798 | Msa1210120:CDS | 40.0% |
| ATGGAAAGTAGCAGTTCACA+AGG | + | chr8_1:68886041-68886060 | Msa1210120:CDS | 40.0% | |
| TTCACCATCAAAACTGTGGT+AGG | - | chr8_1:68886088-68886107 | None:intergenic | 40.0% | |
| CTTGTTCACCATCAAAACTG+TGG | - | chr8_1:68886092-68886111 | None:intergenic | 40.0% | |
| !!! | CACAGTTTTGATGGTGAACA+AGG | + | chr8_1:68886090-68886109 | Msa1210120:CDS | 40.0% |
| GTATACAAATGAGGCTGATG+TGG | - | chr8_1:68886251-68886270 | None:intergenic | 40.0% | |
| CAGACTGATGGAGTCTACTT+CGG | + | chr8_1:68885766-68885785 | Msa1210120:intron | 45.0% | |
| !! | GTCTACTTCGGTGGTCTTAT+TGG | + | chr8_1:68885778-68885797 | Msa1210120:CDS | 45.0% |
| TTATTGGGCGTGTGGCAAAT+AGG | + | chr8_1:68885794-68885813 | Msa1210120:CDS | 45.0% | |
| TGGAGGAGCTCAATTCACTT+TGG | + | chr8_1:68885819-68885838 | Msa1210120:CDS | 45.0% | |
| GGAGCTCAATTCACTTTGGA+TGG | + | chr8_1:68885823-68885842 | Msa1210120:CDS | 45.0% | |
| GTGTTCCCATGATCATTAGC+TGG | - | chr8_1:68885865-68885884 | None:intergenic | 45.0% | |
| AAATTGCAGGTGGCCAGAAA+GGG | + | chr8_1:68886004-68886023 | Msa1210120:intron | 45.0% | |
| !! | AAGGGTTCGGTGATAACGTA+TGG | + | chr8_1:68886022-68886041 | Msa1210120:CDS | 45.0% |
| CAGACTGATGGAGTCTACTT+CGG | + | chr8_1:68885766-68885785 | Msa1210120:intron | 45.0% | |
| !! | GTCTACTTCGGTGGTCTTAT+TGG | + | chr8_1:68885778-68885797 | Msa1210120:CDS | 45.0% |
| TTATTGGGCGTGTGGCAAAT+AGG | + | chr8_1:68885794-68885813 | Msa1210120:CDS | 45.0% | |
| TGGAGGAGCTCAATTCACTT+TGG | + | chr8_1:68885819-68885838 | Msa1210120:CDS | 45.0% | |
| GGAGCTCAATTCACTTTGGA+TGG | + | chr8_1:68885823-68885842 | Msa1210120:CDS | 45.0% | |
| GTGTTCCCATGATCATTAGC+TGG | - | chr8_1:68885865-68885884 | None:intergenic | 45.0% | |
| AAATTGCAGGTGGCCAGAAA+GGG | + | chr8_1:68886004-68886023 | Msa1210120:intron | 45.0% | |
| !! | AAGGGTTCGGTGATAACGTA+TGG | + | chr8_1:68886022-68886041 | Msa1210120:CDS | 45.0% |
| ! | ACAACATCAGCCACTTTCCC+TGG | - | chr8_1:68885524-68885543 | None:intergenic | 50.0% |
| ACTGATGGAGTCTACTTCGG+TGG | + | chr8_1:68885769-68885788 | Msa1210120:CDS | 50.0% | |
| CGTGTGGCAAATAGGATTGG+AGG | + | chr8_1:68885802-68885821 | Msa1210120:CDS | 50.0% | |
| GATCATGGGAACACACTCCA+TGG | + | chr8_1:68885871-68885890 | Msa1210120:CDS | 50.0% | |
| GAAATTGCAGGTGGCCAGAA+AGG | + | chr8_1:68886003-68886022 | Msa1210120:intron | 50.0% | |
| CGTTATCACCGAACCCTTTC+TGG | - | chr8_1:68886020-68886039 | None:intergenic | 50.0% | |
| TGTTGCTGCGACTGCGTTTA+AGG | + | chr8_1:68886225-68886244 | Msa1210120:CDS | 50.0% | |
| ! | ACAACATCAGCCACTTTCCC+TGG | - | chr8_1:68885524-68885543 | None:intergenic | 50.0% |
| ACTGATGGAGTCTACTTCGG+TGG | + | chr8_1:68885769-68885788 | Msa1210120:CDS | 50.0% | |
| CGTGTGGCAAATAGGATTGG+AGG | + | chr8_1:68885802-68885821 | Msa1210120:CDS | 50.0% | |
| GATCATGGGAACACACTCCA+TGG | + | chr8_1:68885871-68885890 | Msa1210120:CDS | 50.0% | |
| GAAATTGCAGGTGGCCAGAA+AGG | + | chr8_1:68886003-68886022 | Msa1210120:intron | 50.0% | |
| CGTTATCACCGAACCCTTTC+TGG | - | chr8_1:68886020-68886039 | None:intergenic | 50.0% | |
| TGTTGCTGCGACTGCGTTTA+AGG | + | chr8_1:68886225-68886244 | Msa1210120:CDS | 50.0% | |
| GGGCGTGTGGCAAATAGGAT+TGG | + | chr8_1:68885799-68885818 | Msa1210120:CDS | 55.0% | |
| GGGCGTGTGGCAAATAGGAT+TGG | + | chr8_1:68885799-68885818 | Msa1210120:CDS | 55.0% | |
| TTGTGTCCTCTTGGGGCTCC+TGG | + | chr8_1:68885276-68885295 | Msa1210120:CDS | 60.0% | |
| TGTGAACCAGGAGCCCCAAG+AGG | - | chr8_1:68885285-68885304 | None:intergenic | 60.0% | |
| !! | CGGTGGTCTTATTGGGCGTG+TGG | + | chr8_1:68885786-68885805 | Msa1210120:CDS | 60.0% |
| GCAGGTGGCCAGAAAGGGTT+CGG | + | chr8_1:68886009-68886028 | Msa1210120:intron | 60.0% | |
| TTGTGTCCTCTTGGGGCTCC+TGG | + | chr8_1:68885276-68885295 | Msa1210120:CDS | 60.0% | |
| TGTGAACCAGGAGCCCCAAG+AGG | - | chr8_1:68885285-68885304 | None:intergenic | 60.0% | |
| !! | CGGTGGTCTTATTGGGCGTG+TGG | + | chr8_1:68885786-68885805 | Msa1210120:CDS | 60.0% |
| GCAGGTGGCCAGAAAGGGTT+CGG | + | chr8_1:68886009-68886028 | Msa1210120:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 68885082 | 68886282 | 68885082 | ID=Msa1210120;Name=Msa1210120 |
| chr8_1 | mRNA | 68885082 | 68886282 | 68885082 | ID=Msa1210120-mRNA-1;Parent=Msa1210120;Name=Msa1210120-mRNA-1;_AED=0.10;_eAED=0.10;_QI=171|0.75|0.8|0.8|1|1|5|0|173 |
| chr8_1 | exon | 68885082 | 68885436 | 68885082 | ID=Msa1210120-mRNA-1:exon:23002;Parent=Msa1210120-mRNA-1 |
| chr8_1 | exon | 68885525 | 68885574 | 68885525 | ID=Msa1210120-mRNA-1:exon:23003;Parent=Msa1210120-mRNA-1 |
| chr8_1 | exon | 68885769 | 68885892 | 68885769 | ID=Msa1210120-mRNA-1:exon:23004;Parent=Msa1210120-mRNA-1 |
| chr8_1 | exon | 68886013 | 68886111 | 68886013 | ID=Msa1210120-mRNA-1:exon:23005;Parent=Msa1210120-mRNA-1 |
| chr8_1 | exon | 68886218 | 68886282 | 68886218 | ID=Msa1210120-mRNA-1:exon:23006;Parent=Msa1210120-mRNA-1 |
| chr8_1 | five_prime_UTR | 68885082 | 68885252 | 68885082 | ID=Msa1210120-mRNA-1:five_prime_utr;Parent=Msa1210120-mRNA-1 |
| chr8_1 | CDS | 68885253 | 68885436 | 68885253 | ID=Msa1210120-mRNA-1:cds;Parent=Msa1210120-mRNA-1 |
| chr8_1 | CDS | 68885525 | 68885574 | 68885525 | ID=Msa1210120-mRNA-1:cds;Parent=Msa1210120-mRNA-1 |
| chr8_1 | CDS | 68885769 | 68885892 | 68885769 | ID=Msa1210120-mRNA-1:cds;Parent=Msa1210120-mRNA-1 |
| chr8_1 | CDS | 68886013 | 68886111 | 68886013 | ID=Msa1210120-mRNA-1:cds;Parent=Msa1210120-mRNA-1 |
| chr8_1 | CDS | 68886218 | 68886282 | 68886218 | ID=Msa1210120-mRNA-1:cds;Parent=Msa1210120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
