Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461570 | XP_039689393.1 | 98.603 | 358 | 5 | 0 | 1 | 358 | 1 | 358 | 0.0 | 726 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461570 | sp|Q5EA79|GALM_BOVIN | 41.284 | 327 | 184 | 6 | 34 | 358 | 22 | 342 | 9.24e-78 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461570 | A0A396IH88 | 98.603 | 358 | 5 | 0 | 1 | 358 | 1 | 358 | 0.0 | 726 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031510 | Msa1461570 | 0.815067 | 1.117856e-51 | -8.615850e-47 |
| Msa0052350 | Msa1461570 | -0.830946 | 2.204799e-55 | -8.615850e-47 |
| Msa0097360 | Msa1461570 | -0.808623 | 2.827681e-50 | -8.615850e-47 |
| Msa1349570 | Msa1461570 | 0.818343 | 2.059890e-52 | -8.615850e-47 |
| Msa1369190 | Msa1461570 | 0.813024 | 3.154878e-51 | -8.615850e-47 |
| Msa1418960 | Msa1461570 | -0.836666 | 8.184794e-57 | -8.615850e-47 |
| Msa0654870 | Msa1461570 | 0.809544 | 1.795884e-50 | -8.615850e-47 |
| Msa0666230 | Msa1461570 | 0.810436 | 1.153619e-50 | -8.615850e-47 |
| Msa0818770 | Msa1461570 | 0.814638 | 1.391605e-51 | -8.615850e-47 |
| Msa0126520 | Msa1461570 | 0.823722 | 1.188493e-53 | -8.615850e-47 |
| Msa1299570 | Msa1461570 | 0.926936 | 2.358948e-91 | -8.615850e-47 |
| Msa1299630 | Msa1461570 | 0.921555 | 3.078490e-88 | -8.615850e-47 |
| Msa1070390 | Msa1461570 | 0.807180 | 5.732801e-50 | -8.615850e-47 |
| Msa0262480 | Msa1461570 | 0.825903 | 3.635967e-54 | -8.615850e-47 |
| Msa0300350 | Msa1461570 | 0.815847 | 7.495583e-52 | -8.615850e-47 |
| Msa1166870 | Msa1461570 | 0.823344 | 1.456959e-53 | -8.615850e-47 |
| Msa1210120 | Msa1461570 | 0.814243 | 1.700940e-51 | -8.615850e-47 |
| Msa1211750 | Msa1461570 | 0.922749 | 6.556449e-89 | -8.615850e-47 |
| Msa0960830 | Msa1461570 | 0.820125 | 8.093152e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461570 | MtrunA17_Chr4g0060521 | 98.603 | 358 | 5 | 0 | 1 | 358 | 1 | 358 | 0.0 | 726 |
| Msa1461570 | MtrunA17_Chr7g0217021 | 55.367 | 354 | 153 | 2 | 7 | 355 | 4 | 357 | 9.38e-139 | 398 |
| Msa1461570 | MtrunA17_Chr6g0452991 | 51.781 | 365 | 165 | 6 | 1 | 355 | 1 | 364 | 5.17e-126 | 367 |
| Msa1461570 | MtrunA17_Chr6g0452971 | 50.137 | 365 | 171 | 6 | 1 | 355 | 1 | 364 | 8.48e-121 | 353 |
| Msa1461570 | MtrunA17_Chr6g0478501 | 46.269 | 335 | 176 | 3 | 25 | 355 | 2 | 336 | 6.77e-106 | 314 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461570 | AT3G47800.1 | 59.697 | 330 | 133 | 0 | 28 | 357 | 28 | 357 | 5.62e-149 | 424 |
| Msa1461570 | AT5G15140.1 | 57.530 | 332 | 137 | 2 | 27 | 355 | 156 | 486 | 1.80e-135 | 395 |
| Msa1461570 | AT3G17940.1 | 47.130 | 331 | 169 | 3 | 33 | 357 | 11 | 341 | 1.98e-108 | 321 |
| Msa1461570 | AT3G01260.1 | 42.331 | 326 | 159 | 7 | 34 | 355 | 122 | 422 | 3.71e-74 | 236 |
Find 102 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTCTAATCTACGTTTA+AGG | 0.102925 | tig0041587:-9801 | None:intergenic |
| TAATCTACGTTTAAGGTTAT+TGG | 0.113160 | tig0041587:-9794 | None:intergenic |
| CGTTATCACCGAACCCTTTC+TGG | 0.147008 | tig0041587:-10693 | None:intergenic |
| ACTGGTGTGGGTTTGTTTAC+TGG | 0.147997 | tig0041587:-11311 | None:intergenic |
| GTCTACTTCGGTGGTCTTAT+TGG | 0.151365 | tig0041587:+10459 | Msa1461570:CDS |
| AAGGAAATGTCTGTTATATT+TGG | 0.171677 | tig0041587:-9752 | None:intergenic |
| TTAGGCTTATTCACAGAATC+TGG | 0.255239 | tig0041587:-11755 | None:intergenic |
| AATCACACCGTTCAAATCTT+TGG | 0.273898 | tig0041587:+11392 | Msa1461570:CDS |
| GCATGTTGTGCTAGATTTAC+TGG | 0.284935 | tig0041587:-11329 | None:intergenic |
| ATTTGACTTCCAACTTGTTT+TGG | 0.291351 | tig0041587:-11500 | None:intergenic |
| TAAGGTTATTGGATAAGTTT+AGG | 0.303289 | tig0041587:-9783 | None:intergenic |
| ACCTGTCTCAGGAAGGAAAA+TGG | 0.309640 | tig0041587:+11610 | Msa1461570:CDS |
| TCTACTTCGGTGGTCTTATT+GGG | 0.313290 | tig0041587:+10460 | Msa1461570:CDS |
| CGGATTCGAGTTTGCCTGTT+GGG | 0.319058 | tig0041587:-11448 | None:intergenic |
| ACACTTACGTCAAGCTTTCC+AGG | 0.329020 | tig0041587:-11236 | None:intergenic |
| GTTCTACATATATATCTCTA+TGG | 0.335584 | tig0041587:+9858 | Msa1461570:five_prime_UTR |
| TTGTGTCCTCTTGGGGCTCC+TGG | 0.337282 | tig0041587:+9956 | Msa1461570:CDS |
| CAAGAGGACACAAAATAATA+AGG | 0.338110 | tig0041587:-9946 | None:intergenic |
| GAAATTGACCCCACAAAATT+CGG | 0.339629 | tig0041587:-9827 | None:intergenic |
| GAATAAAATTATATCGTGTT+TGG | 0.351335 | tig0041587:-11981 | None:intergenic |
| ACAATCTGAGATGGAAAGTT+AGG | 0.353204 | tig0041587:-11773 | None:intergenic |
| CAAGACAAACCATGTTTATC+AGG | 0.353823 | tig0041587:-10104 | None:intergenic |
| GTTGCTTGAAAAGAACATAT+TGG | 0.382460 | tig0041587:+11268 | Msa1461570:CDS |
| TATCATGGTTTATCGATTCA+TGG | 0.386506 | tig0041587:+11820 | Msa1461570:CDS |
| AGGGTTAATTTGACAAACTA+TGG | 0.390776 | tig0041587:+10056 | Msa1461570:CDS |
| TTATTGGGCGTGTGGCAAAT+AGG | 0.397686 | tig0041587:+10475 | Msa1461570:CDS |
| CAAGTATGGTGGCATTGCTT+TGG | 0.405496 | tig0041587:+11718 | Msa1461570:CDS |
| TGTGGGTTTGTTTACTGGCT+TGG | 0.409918 | tig0041587:-11306 | None:intergenic |
| AGTCAAATTAATGACCTTCC+TGG | 0.412379 | tig0041587:+11515 | Msa1461570:CDS |
| TTGCTTGAAAAGAACATATT+GGG | 0.414739 | tig0041587:+11269 | Msa1461570:CDS |
| AGTGAGAAAAGTGAGAAGAT+TGG | 0.420991 | tig0041587:+10005 | Msa1461570:CDS |
| AAAGTGGCTGATGTTGTTCT+TGG | 0.422078 | tig0041587:+10208 | Msa1461570:CDS |
| ATCTAGCACAACATGCATAC+TGG | 0.440235 | tig0041587:+11336 | Msa1461570:CDS |
| CACCACTGTTGTGGCCTCCT+AGG | 0.441891 | tig0041587:-11361 | None:intergenic |
| CAACATGCATACTGGAACCT+AGG | 0.444782 | tig0041587:+11344 | Msa1461570:CDS |
| AATGATAACATTGTGTATAC+TGG | 0.450709 | tig0041587:+11956 | Msa1461570:three_prime_UTR |
| GGAGCTACATATCACAAGTA+TGG | 0.454827 | tig0041587:+11704 | Msa1461570:CDS |
| TTTGGTTTAAGGAAATCATA+TGG | 0.455507 | tig0041587:-11482 | None:intergenic |
| GAAATTGCAGGTGGCCAGAA+AGG | 0.457841 | tig0041587:+10679 | Msa1461570:intron |
| AAATTGCCAGCTAATGATCA+TGG | 0.472562 | tig0041587:+10537 | Msa1461570:CDS |
| ATCATATGGCGTGTTCTTCA+CGG | 0.473462 | tig0041587:-11468 | None:intergenic |
| GATGATAAACTCATCCCAAC+AGG | 0.473597 | tig0041587:+11434 | Msa1461570:CDS |
| TTCTTTCACTATACAAACCT+TGG | 0.474623 | tig0041587:-11588 | None:intergenic |
| TTCCTTAAACCAAAACAAGT+TGG | 0.480970 | tig0041587:+11491 | Msa1461570:CDS |
| CCATCTCAGATTGTGAAGCC+TGG | 0.483704 | tig0041587:+11782 | Msa1461570:CDS |
| TGGAGGAGCTCAATTCACTT+TGG | 0.490944 | tig0041587:+10500 | Msa1461570:CDS |
| ATATGCTTGTATGTCTCTCC+AGG | 0.492010 | tig0041587:-11800 | None:intergenic |
| GCAGGTGGCCAGAAAGGGTT+CGG | 0.495854 | tig0041587:+10685 | Msa1461570:intron |
| TGTGCTAGATTTACTGGTGT+GGG | 0.510614 | tig0041587:-11323 | None:intergenic |
| GGAGCTCAATTCACTTTGGA+TGG | 0.518150 | tig0041587:+10504 | Msa1461570:CDS |
| TATAGTATTGCAATCCAACT+TGG | 0.523209 | tig0041587:-11646 | None:intergenic |
| CCAGGCTTCACAATCTGAGA+TGG | 0.524924 | tig0041587:-11782 | None:intergenic |
| GGGCGTGTGGCAAATAGGAT+TGG | 0.526639 | tig0041587:+10480 | Msa1461570:CDS |
| AAGGGTTCGGTGATAACGTA+TGG | 0.530622 | tig0041587:+10698 | Msa1461570:CDS |
| AACTACGCAATTGACGTGAA+TGG | 0.533501 | tig0041587:+11551 | Msa1461570:CDS |
| TAGGCTTATTCACAGAATCT+GGG | 0.535737 | tig0041587:-11754 | None:intergenic |
| AGCTAAATGATGAACAAGAA+AGG | 0.538781 | tig0041587:-11902 | None:intergenic |
| TGATTCCATTGAGCAATATG+AGG | 0.542382 | tig0041587:+10234 | Msa1461570:CDS |
| GGGATGAGTTTATCATCTAC+CGG | 0.542823 | tig0041587:-11428 | None:intergenic |
| TATATATGTAGAACTGAAGG+AGG | 0.543464 | tig0041587:-9849 | None:intergenic |
| ATAGTGAAAGAACCTGTCTC+AGG | 0.544121 | tig0041587:+11599 | Msa1461570:CDS |
| GTGTTCCCATGATCATTAGC+TGG | 0.546884 | tig0041587:-10543 | None:intergenic |
| TTGTGCTAGATTTACTGGTG+TGG | 0.547703 | tig0041587:-11324 | None:intergenic |
| AAATTGCAGGTGGCCAGAAA+GGG | 0.548265 | tig0041587:+10680 | Msa1461570:intron |
| TCATACCTCATATTGCTCAA+TGG | 0.551688 | tig0041587:-10239 | None:intergenic |
| TGAAATTTGATGCAGACTGA+TGG | 0.555921 | tig0041587:+10435 | Msa1461570:intron |
| ACTGATACTAAAGGAAAGGA+TGG | 0.557269 | tig0041587:+11683 | Msa1461570:CDS |
| CGGTGGTCTTATTGGGCGTG+TGG | 0.557522 | tig0041587:+10467 | Msa1461570:CDS |
| AGATATATATGTAGAACTGA+AGG | 0.560239 | tig0041587:-9852 | None:intergenic |
| CGTGTGGCAAATAGGATTGG+AGG | 0.564047 | tig0041587:+10483 | Msa1461570:CDS |
| GAGAAATAATTGTTCAACAA+TGG | 0.565502 | tig0041587:+9914 | Msa1461570:exon |
| ACGGATTCGAGTTTGCCTGT+TGG | 0.566013 | tig0041587:-11449 | None:intergenic |
| TAATTGTTCAACAATGGCTA+AGG | 0.569688 | tig0041587:+9920 | Msa1461570:exon |
| GTTGACTGATACTAAAGGAA+AGG | 0.576122 | tig0041587:+11679 | Msa1461570:CDS |
| TTTATCATCTACCGGTGTGA+TGG | 0.578356 | tig0041587:-11420 | None:intergenic |
| GATCATGGGAACACACTCCA+TGG | 0.584348 | tig0041587:+10552 | Msa1461570:CDS |
| GGCATTGCTTTGGAGACACA+AGG | 0.585444 | tig0041587:+11728 | Msa1461570:CDS |
| AATTGCCAGCTAATGATCAT+GGG | 0.589702 | tig0041587:+10538 | Msa1461570:CDS |
| GAGTTGTGGTCAAACCAAGT+TGG | 0.590032 | tig0041587:+11632 | Msa1461570:CDS |
| AGAGACATACAAGCATATCA+TGG | 0.596154 | tig0041587:+11805 | Msa1461570:CDS |
| TGGTCAAAATCATTTAACCA+AGG | 0.602850 | tig0041587:+11571 | Msa1461570:CDS |
| CAGACTGATGGAGTCTACTT+CGG | 0.614831 | tig0041587:+10447 | Msa1461570:intron |
| TGAAAGAACCTGTCTCAGGA+AGG | 0.620515 | tig0041587:+11603 | Msa1461570:CDS |
| GTTTATGTACCTGATAAACA+TGG | 0.622676 | tig0041587:+10095 | Msa1461570:CDS |
| TTCACCATCAAAACTGTGGT+AGG | 0.630989 | tig0041587:-10761 | None:intergenic |
| GGAATGTTGACTGATACTAA+AGG | 0.631864 | tig0041587:+11674 | Msa1461570:CDS |
| TAAGAATGTCACCACTGTTG+TGG | 0.637458 | tig0041587:-11370 | None:intergenic |
| CAGGAAGGAAAATGGAGTTG+TGG | 0.640117 | tig0041587:+11618 | Msa1461570:CDS |
| GGATTGCAATACTATACTAG+TGG | 0.642698 | tig0041587:+11653 | Msa1461570:CDS |
| TAATGTCGTATAAACCAGGA+AGG | 0.653054 | tig0041587:-11529 | None:intergenic |
| TAGTTAATGTCGTATAAACC+AGG | 0.656726 | tig0041587:-11533 | None:intergenic |
| CATGCATACTGGAACCTAGG+AGG | 0.665406 | tig0041587:+11347 | Msa1461570:CDS |
| AATGTGCATAAGTGTGAACC+AGG | 0.665476 | tig0041587:-9974 | None:intergenic |
| ACTGATGGAGTCTACTTCGG+TGG | 0.669276 | tig0041587:+10450 | Msa1461570:CDS |
| GCTACATATCACAAGTATGG+TGG | 0.672659 | tig0041587:+11707 | Msa1461570:CDS |
| AACCTAGGAGGCCACAACAG+TGG | 0.673482 | tig0041587:+11359 | Msa1461570:CDS |
| CTTTGGTTCATCCATCACAC+CGG | 0.680058 | tig0041587:+11409 | Msa1461570:CDS |
| CTTGTTCACCATCAAAACTG+TGG | 0.689661 | tig0041587:-10765 | None:intergenic |
| ATGGAAAGTAGCAGTTCACA+AGG | 0.691394 | tig0041587:+10717 | Msa1461570:CDS |
| TGTGAACCAGGAGCCCCAAG+AGG | 0.695938 | tig0041587:-9962 | None:intergenic |
| GGATGAACCAAAGATTTGAA+CGG | 0.710916 | tig0041587:-11399 | None:intergenic |
| ATAAGTTTAGGATTTCAACA+AGG | 0.716453 | tig0041587:-9771 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTATTTCATATCT+AGG | + | tig0041587:10127-10146 | Msa1461570:intron | 10.0% |
| !! | AAGTTATATAAATATTAATG+TGG | - | tig0041587:10163-10182 | None:intergenic | 10.0% |
| !! | GAATATTTAAATTATATATG+TGG | - | tig0041587:10819-10838 | None:intergenic | 10.0% |
| !!! | TTCAAAATTTAAAATCAAAA+CGG | - | tig0041587:11102-11121 | None:intergenic | 10.0% |
| !!! | TTTTATTTTATTTCATATCT+AGG | + | tig0041587:10127-10146 | Msa1461570:intron | 10.0% |
| !! | AAGTTATATAAATATTAATG+TGG | - | tig0041587:10163-10182 | None:intergenic | 10.0% |
| !! | GAATATTTAAATTATATATG+TGG | - | tig0041587:10819-10838 | None:intergenic | 10.0% |
| !!! | TTCAAAATTTAAAATCAAAA+CGG | - | tig0041587:11102-11121 | None:intergenic | 10.0% |
| !! | TAAATATTAATGTGGAATAA+GGG | - | tig0041587:10155-10174 | None:intergenic | 15.0% |
| !! | ATAAATATTAATGTGGAATA+AGG | - | tig0041587:10156-10175 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATTTACTTTTCC+AGG | + | tig0041587:10184-10203 | Msa1461570:intron | 15.0% |
| !!! | TTTTTTTATTTACTTTTCCA+GGG | + | tig0041587:10185-10204 | Msa1461570:intron | 15.0% |
| !! | TACTATATATAAGAGAAAAT+TGG | + | tig0041587:10355-10374 | Msa1461570:intron | 15.0% |
| !! | TAAATATTAATGTGGAATAA+GGG | - | tig0041587:10155-10174 | None:intergenic | 15.0% |
| !! | ATAAATATTAATGTGGAATA+AGG | - | tig0041587:10156-10175 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATTTACTTTTCC+AGG | + | tig0041587:10184-10203 | Msa1461570:intron | 15.0% |
| !!! | TTTTTTTATTTACTTTTCCA+GGG | + | tig0041587:10185-10204 | Msa1461570:intron | 15.0% |
| !! | TACTATATATAAGAGAAAAT+TGG | + | tig0041587:10355-10374 | Msa1461570:intron | 15.0% |
| !!! | GGATTTTATGAGTTAAAAAA+AGG | + | tig0041587:10026-10045 | Msa1461570:CDS | 20.0% |
| !! | ATATTAATATTAACGTACCA+TGG | - | tig0041587:10572-10591 | None:intergenic | 20.0% |
| !! | ATTTAAATTATATATGTGGC+AGG | - | tig0041587:10815-10834 | None:intergenic | 20.0% |
| !! | TACGATTCTTTGTAATATTA+AGG | + | tig0041587:10944-10963 | Msa1461570:intron | 20.0% |
| !! | GAATAAAATTATATCGTGTT+TGG | - | tig0041587:11984-12003 | None:intergenic | 20.0% |
| !!! | GGATTTTATGAGTTAAAAAA+AGG | + | tig0041587:10026-10045 | Msa1461570:CDS | 20.0% |
| !! | ATATTAATATTAACGTACCA+TGG | - | tig0041587:10572-10591 | None:intergenic | 20.0% |
| !! | ATTTAAATTATATATGTGGC+AGG | - | tig0041587:10815-10834 | None:intergenic | 20.0% |
| !! | TACGATTCTTTGTAATATTA+AGG | + | tig0041587:10944-10963 | Msa1461570:intron | 20.0% |
| !! | GAATAAAATTATATCGTGTT+TGG | - | tig0041587:11984-12003 | None:intergenic | 20.0% |
| ! | AAGGAAATGTCTGTTATATT+TGG | - | tig0041587:9755-9774 | None:intergenic | 25.0% |
| !! | ATAAGTTTAGGATTTCAACA+AGG | - | tig0041587:9774-9793 | None:intergenic | 25.0% |
| ! | TAAGGTTATTGGATAAGTTT+AGG | - | tig0041587:9786-9805 | None:intergenic | 25.0% |
| !! | TAATCTACGTTTAAGGTTAT+TGG | - | tig0041587:9797-9816 | None:intergenic | 25.0% |
| ! | AACTTTCTAATCTACGTTTA+AGG | - | tig0041587:9804-9823 | None:intergenic | 25.0% |
| !! | AAAGTTAATCCGAATTTTGT+GGG | + | tig0041587:9818-9837 | Msa1461570:five_prime_UTR | 25.0% |
| ! | AGATATATATGTAGAACTGA+AGG | - | tig0041587:9855-9874 | None:intergenic | 25.0% |
| ! | GTTCTACATATATATCTCTA+TGG | + | tig0041587:9858-9877 | Msa1461570:five_prime_UTR | 25.0% |
| ! | GAGAAATAATTGTTCAACAA+TGG | + | tig0041587:9914-9933 | Msa1461570:exon | 25.0% |
| !!! | TTATTATTTTGTGTCCTCTT+GGG | + | tig0041587:9948-9967 | Msa1461570:CDS | 25.0% |
| !! | AGTTAAAAAAAGGAAGTATG+AGG | + | tig0041587:10036-10055 | Msa1461570:CDS | 25.0% |
| !! | GTTAAAAAAAGGAAGTATGA+GGG | + | tig0041587:10037-10056 | Msa1461570:CDS | 25.0% |
| ! | TTAATCATTGATGAAATTGC+AGG | + | tig0041587:10667-10686 | Msa1461570:intron | 25.0% |
| !!! | AGTTTTATTGCTACAAACAT+GGG | - | tig0041587:11170-11189 | None:intergenic | 25.0% |
| !!! | TAGTTTTATTGCTACAAACA+TGG | - | tig0041587:11171-11190 | None:intergenic | 25.0% |
| ! | TTTGCAAAATAAAACTCAAC+AGG | + | tig0041587:11209-11228 | Msa1461570:intron | 25.0% |
| ! | TTGCTTGAAAAGAACATATT+GGG | + | tig0041587:11269-11288 | Msa1461570:CDS | 25.0% |
| !! | TTTGGTTTAAGGAAATCATA+TGG | - | tig0041587:11485-11504 | None:intergenic | 25.0% |
| ! | AATGATAACATTGTGTATAC+TGG | + | tig0041587:11956-11975 | Msa1461570:three_prime_UTR | 25.0% |
| ! | AAGGAAATGTCTGTTATATT+TGG | - | tig0041587:9755-9774 | None:intergenic | 25.0% |
| !! | ATAAGTTTAGGATTTCAACA+AGG | - | tig0041587:9774-9793 | None:intergenic | 25.0% |
| ! | TAAGGTTATTGGATAAGTTT+AGG | - | tig0041587:9786-9805 | None:intergenic | 25.0% |
| !! | TAATCTACGTTTAAGGTTAT+TGG | - | tig0041587:9797-9816 | None:intergenic | 25.0% |
| ! | AACTTTCTAATCTACGTTTA+AGG | - | tig0041587:9804-9823 | None:intergenic | 25.0% |
| !! | AAAGTTAATCCGAATTTTGT+GGG | + | tig0041587:9818-9837 | Msa1461570:five_prime_UTR | 25.0% |
| ! | AGATATATATGTAGAACTGA+AGG | - | tig0041587:9855-9874 | None:intergenic | 25.0% |
| ! | GTTCTACATATATATCTCTA+TGG | + | tig0041587:9858-9877 | Msa1461570:five_prime_UTR | 25.0% |
| ! | GAGAAATAATTGTTCAACAA+TGG | + | tig0041587:9914-9933 | Msa1461570:exon | 25.0% |
| !!! | TTATTATTTTGTGTCCTCTT+GGG | + | tig0041587:9948-9967 | Msa1461570:CDS | 25.0% |
| !! | AGTTAAAAAAAGGAAGTATG+AGG | + | tig0041587:10036-10055 | Msa1461570:CDS | 25.0% |
| !! | GTTAAAAAAAGGAAGTATGA+GGG | + | tig0041587:10037-10056 | Msa1461570:CDS | 25.0% |
| ! | TTAATCATTGATGAAATTGC+AGG | + | tig0041587:10667-10686 | Msa1461570:intron | 25.0% |
| !!! | AGTTTTATTGCTACAAACAT+GGG | - | tig0041587:11170-11189 | None:intergenic | 25.0% |
| !!! | TAGTTTTATTGCTACAAACA+TGG | - | tig0041587:11171-11190 | None:intergenic | 25.0% |
| ! | TTTGCAAAATAAAACTCAAC+AGG | + | tig0041587:11209-11228 | Msa1461570:intron | 25.0% |
| ! | TTGCTTGAAAAGAACATATT+GGG | + | tig0041587:11269-11288 | Msa1461570:CDS | 25.0% |
| !! | TTTGGTTTAAGGAAATCATA+TGG | - | tig0041587:11485-11504 | None:intergenic | 25.0% |
| ! | AATGATAACATTGTGTATAC+TGG | + | tig0041587:11956-11975 | Msa1461570:three_prime_UTR | 25.0% |
| ! | GAAAGTTAATCCGAATTTTG+TGG | + | tig0041587:9817-9836 | Msa1461570:five_prime_UTR | 30.0% |
| ! | AAGTTAATCCGAATTTTGTG+GGG | + | tig0041587:9819-9838 | Msa1461570:five_prime_UTR | 30.0% |
| TATATATGTAGAACTGAAGG+AGG | - | tig0041587:9852-9871 | None:intergenic | 30.0% | |
| TAATTGTTCAACAATGGCTA+AGG | + | tig0041587:9920-9939 | Msa1461570:exon | 30.0% | |
| CAAGAGGACACAAAATAATA+AGG | - | tig0041587:9949-9968 | None:intergenic | 30.0% | |
| !! | CTTATTATTTTGTGTCCTCT+TGG | + | tig0041587:9947-9966 | Msa1461570:CDS | 30.0% |
| !! | TATTATTTTGTGTCCTCTTG+GGG | + | tig0041587:9949-9968 | Msa1461570:CDS | 30.0% |
| ! | AGGGTTAATTTGACAAACTA+TGG | + | tig0041587:10056-10075 | Msa1461570:CDS | 30.0% |
| GTTTATGTACCTGATAAACA+TGG | + | tig0041587:10095-10114 | Msa1461570:CDS | 30.0% | |
| ! | ATGCATTTGGTTCAAATTGT+GGG | + | tig0041587:10389-10408 | Msa1461570:intron | 30.0% |
| CAAAGAATCGTATACAAATG+AGG | - | tig0041587:10936-10955 | None:intergenic | 30.0% | |
| !! | GTTTTATTGCTACAAACATG+GGG | - | tig0041587:11169-11188 | None:intergenic | 30.0% |
| GTTGCTTGAAAAGAACATAT+TGG | + | tig0041587:11268-11287 | Msa1461570:CDS | 30.0% | |
| TTCCTTAAACCAAAACAAGT+TGG | + | tig0041587:11491-11510 | Msa1461570:CDS | 30.0% | |
| !!! | TTCCAACTTGTTTTGGTTTA+AGG | - | tig0041587:11496-11515 | None:intergenic | 30.0% |
| !! | ATTTGACTTCCAACTTGTTT+TGG | - | tig0041587:11503-11522 | None:intergenic | 30.0% |
| TAGTTAATGTCGTATAAACC+AGG | - | tig0041587:11536-11555 | None:intergenic | 30.0% | |
| TGGTCAAAATCATTTAACCA+AGG | + | tig0041587:11571-11590 | Msa1461570:CDS | 30.0% | |
| TTCTTTCACTATACAAACCT+TGG | - | tig0041587:11591-11610 | None:intergenic | 30.0% | |
| TATAGTATTGCAATCCAACT+TGG | - | tig0041587:11649-11668 | None:intergenic | 30.0% | |
| !! | TATCATGGTTTATCGATTCA+TGG | + | tig0041587:11820-11839 | Msa1461570:CDS | 30.0% |
| AGCTAAATGATGAACAAGAA+AGG | - | tig0041587:11905-11924 | None:intergenic | 30.0% | |
| ! | GAAAGTTAATCCGAATTTTG+TGG | + | tig0041587:9817-9836 | Msa1461570:five_prime_UTR | 30.0% |
| ! | AAGTTAATCCGAATTTTGTG+GGG | + | tig0041587:9819-9838 | Msa1461570:five_prime_UTR | 30.0% |
| TATATATGTAGAACTGAAGG+AGG | - | tig0041587:9852-9871 | None:intergenic | 30.0% | |
| TAATTGTTCAACAATGGCTA+AGG | + | tig0041587:9920-9939 | Msa1461570:exon | 30.0% | |
| CAAGAGGACACAAAATAATA+AGG | - | tig0041587:9949-9968 | None:intergenic | 30.0% | |
| !! | CTTATTATTTTGTGTCCTCT+TGG | + | tig0041587:9947-9966 | Msa1461570:CDS | 30.0% |
| !! | TATTATTTTGTGTCCTCTTG+GGG | + | tig0041587:9949-9968 | Msa1461570:CDS | 30.0% |
| ! | AGGGTTAATTTGACAAACTA+TGG | + | tig0041587:10056-10075 | Msa1461570:CDS | 30.0% |
| GTTTATGTACCTGATAAACA+TGG | + | tig0041587:10095-10114 | Msa1461570:CDS | 30.0% | |
| ! | ATGCATTTGGTTCAAATTGT+GGG | + | tig0041587:10389-10408 | Msa1461570:intron | 30.0% |
| CAAAGAATCGTATACAAATG+AGG | - | tig0041587:10936-10955 | None:intergenic | 30.0% | |
| !! | GTTTTATTGCTACAAACATG+GGG | - | tig0041587:11169-11188 | None:intergenic | 30.0% |
| GTTGCTTGAAAAGAACATAT+TGG | + | tig0041587:11268-11287 | Msa1461570:CDS | 30.0% | |
| TTCCTTAAACCAAAACAAGT+TGG | + | tig0041587:11491-11510 | Msa1461570:CDS | 30.0% | |
| !!! | TTCCAACTTGTTTTGGTTTA+AGG | - | tig0041587:11496-11515 | None:intergenic | 30.0% |
| !! | ATTTGACTTCCAACTTGTTT+TGG | - | tig0041587:11503-11522 | None:intergenic | 30.0% |
| TAGTTAATGTCGTATAAACC+AGG | - | tig0041587:11536-11555 | None:intergenic | 30.0% | |
| TGGTCAAAATCATTTAACCA+AGG | + | tig0041587:11571-11590 | Msa1461570:CDS | 30.0% | |
| TTCTTTCACTATACAAACCT+TGG | - | tig0041587:11591-11610 | None:intergenic | 30.0% | |
| TATAGTATTGCAATCCAACT+TGG | - | tig0041587:11649-11668 | None:intergenic | 30.0% | |
| !! | TATCATGGTTTATCGATTCA+TGG | + | tig0041587:11820-11839 | Msa1461570:CDS | 30.0% |
| AGCTAAATGATGAACAAGAA+AGG | - | tig0041587:11905-11924 | None:intergenic | 30.0% | |
| GAAATTGACCCCACAAAATT+CGG | - | tig0041587:9830-9849 | None:intergenic | 35.0% | |
| AGTGAGAAAAGTGAGAAGAT+TGG | + | tig0041587:10005-10024 | Msa1461570:CDS | 35.0% | |
| CAAGACAAACCATGTTTATC+AGG | - | tig0041587:10107-10126 | None:intergenic | 35.0% | |
| !! | ATTTACTTTTCCAGGGAAAG+TGG | + | tig0041587:10192-10211 | Msa1461570:intron | 35.0% |
| TGATTCCATTGAGCAATATG+AGG | + | tig0041587:10234-10253 | Msa1461570:CDS | 35.0% | |
| TCATACCTCATATTGCTCAA+TGG | - | tig0041587:10242-10261 | None:intergenic | 35.0% | |
| ! | GGATCAATAGTTGATGCATT+TGG | + | tig0041587:10376-10395 | Msa1461570:intron | 35.0% |
| ! | GATGCATTTGGTTCAAATTG+TGG | + | tig0041587:10388-10407 | Msa1461570:intron | 35.0% |
| TGAAATTTGATGCAGACTGA+TGG | + | tig0041587:10435-10454 | Msa1461570:intron | 35.0% | |
| AAATTGCCAGCTAATGATCA+TGG | + | tig0041587:10537-10556 | Msa1461570:CDS | 35.0% | |
| AATTGCCAGCTAATGATCAT+GGG | + | tig0041587:10538-10557 | Msa1461570:CDS | 35.0% | |
| ATCATTGATGAAATTGCAGG+TGG | + | tig0041587:10670-10689 | Msa1461570:intron | 35.0% | |
| !! | TTTACCTACCACAGTTTTGA+TGG | + | tig0041587:10757-10776 | Msa1461570:CDS | 35.0% |
| ! | CTTGGTTGTTCGTTTTATCA+CGG | + | tig0041587:11000-11019 | Msa1461570:intron | 35.0% |
| ! | TAAAACTCAACAGGTTTTCC+TGG | + | tig0041587:11218-11237 | Msa1461570:intron | 35.0% |
| AATCACACCGTTCAAATCTT+TGG | + | tig0041587:11392-11411 | Msa1461570:CDS | 35.0% | |
| GGATGAACCAAAGATTTGAA+CGG | - | tig0041587:11402-11421 | None:intergenic | 35.0% | |
| AGTCAAATTAATGACCTTCC+TGG | + | tig0041587:11515-11534 | Msa1461570:CDS | 35.0% | |
| TAATGTCGTATAAACCAGGA+AGG | - | tig0041587:11532-11551 | None:intergenic | 35.0% | |
| GGATTGCAATACTATACTAG+TGG | + | tig0041587:11653-11672 | Msa1461570:CDS | 35.0% | |
| ! | GGAATGTTGACTGATACTAA+AGG | + | tig0041587:11674-11693 | Msa1461570:CDS | 35.0% |
| GTTGACTGATACTAAAGGAA+AGG | + | tig0041587:11679-11698 | Msa1461570:CDS | 35.0% | |
| ACTGATACTAAAGGAAAGGA+TGG | + | tig0041587:11683-11702 | Msa1461570:CDS | 35.0% | |
| TAGGCTTATTCACAGAATCT+GGG | - | tig0041587:11757-11776 | None:intergenic | 35.0% | |
| TTAGGCTTATTCACAGAATC+TGG | - | tig0041587:11758-11777 | None:intergenic | 35.0% | |
| ! | ACAATCTGAGATGGAAAGTT+AGG | - | tig0041587:11776-11795 | None:intergenic | 35.0% |
| AGAGACATACAAGCATATCA+TGG | + | tig0041587:11805-11824 | Msa1461570:CDS | 35.0% | |
| GAAATTGACCCCACAAAATT+CGG | - | tig0041587:9830-9849 | None:intergenic | 35.0% | |
| AGTGAGAAAAGTGAGAAGAT+TGG | + | tig0041587:10005-10024 | Msa1461570:CDS | 35.0% | |
| CAAGACAAACCATGTTTATC+AGG | - | tig0041587:10107-10126 | None:intergenic | 35.0% | |
| !! | ATTTACTTTTCCAGGGAAAG+TGG | + | tig0041587:10192-10211 | Msa1461570:intron | 35.0% |
| TGATTCCATTGAGCAATATG+AGG | + | tig0041587:10234-10253 | Msa1461570:CDS | 35.0% | |
| TCATACCTCATATTGCTCAA+TGG | - | tig0041587:10242-10261 | None:intergenic | 35.0% | |
| ! | GGATCAATAGTTGATGCATT+TGG | + | tig0041587:10376-10395 | Msa1461570:intron | 35.0% |
| ! | GATGCATTTGGTTCAAATTG+TGG | + | tig0041587:10388-10407 | Msa1461570:intron | 35.0% |
| TGAAATTTGATGCAGACTGA+TGG | + | tig0041587:10435-10454 | Msa1461570:intron | 35.0% | |
| AAATTGCCAGCTAATGATCA+TGG | + | tig0041587:10537-10556 | Msa1461570:CDS | 35.0% | |
| AATTGCCAGCTAATGATCAT+GGG | + | tig0041587:10538-10557 | Msa1461570:CDS | 35.0% | |
| ATCATTGATGAAATTGCAGG+TGG | + | tig0041587:10670-10689 | Msa1461570:intron | 35.0% | |
| !! | TTTACCTACCACAGTTTTGA+TGG | + | tig0041587:10757-10776 | Msa1461570:CDS | 35.0% |
| ! | CTTGGTTGTTCGTTTTATCA+CGG | + | tig0041587:11000-11019 | Msa1461570:intron | 35.0% |
| ! | TAAAACTCAACAGGTTTTCC+TGG | + | tig0041587:11218-11237 | Msa1461570:intron | 35.0% |
| AATCACACCGTTCAAATCTT+TGG | + | tig0041587:11392-11411 | Msa1461570:CDS | 35.0% | |
| GGATGAACCAAAGATTTGAA+CGG | - | tig0041587:11402-11421 | None:intergenic | 35.0% | |
| AGTCAAATTAATGACCTTCC+TGG | + | tig0041587:11515-11534 | Msa1461570:CDS | 35.0% | |
| TAATGTCGTATAAACCAGGA+AGG | - | tig0041587:11532-11551 | None:intergenic | 35.0% | |
| GGATTGCAATACTATACTAG+TGG | + | tig0041587:11653-11672 | Msa1461570:CDS | 35.0% | |
| ! | GGAATGTTGACTGATACTAA+AGG | + | tig0041587:11674-11693 | Msa1461570:CDS | 35.0% |
| GTTGACTGATACTAAAGGAA+AGG | + | tig0041587:11679-11698 | Msa1461570:CDS | 35.0% | |
| ACTGATACTAAAGGAAAGGA+TGG | + | tig0041587:11683-11702 | Msa1461570:CDS | 35.0% | |
| TAGGCTTATTCACAGAATCT+GGG | - | tig0041587:11757-11776 | None:intergenic | 35.0% | |
| TTAGGCTTATTCACAGAATC+TGG | - | tig0041587:11758-11777 | None:intergenic | 35.0% | |
| ! | ACAATCTGAGATGGAAAGTT+AGG | - | tig0041587:11776-11795 | None:intergenic | 35.0% |
| AGAGACATACAAGCATATCA+TGG | + | tig0041587:11805-11824 | Msa1461570:CDS | 35.0% | |
| AATGTGCATAAGTGTGAACC+AGG | - | tig0041587:9977-9996 | None:intergenic | 40.0% | |
| AAAGTGGCTGATGTTGTTCT+TGG | + | tig0041587:10208-10227 | Msa1461570:CDS | 40.0% | |
| !! | TCTACTTCGGTGGTCTTATT+GGG | + | tig0041587:10460-10479 | Msa1461570:CDS | 40.0% |
| ATGGAAAGTAGCAGTTCACA+AGG | + | tig0041587:10717-10736 | Msa1461570:CDS | 40.0% | |
| TTCACCATCAAAACTGTGGT+AGG | - | tig0041587:10764-10783 | None:intergenic | 40.0% | |
| CTTGTTCACCATCAAAACTG+TGG | - | tig0041587:10768-10787 | None:intergenic | 40.0% | |
| !!! | CACAGTTTTGATGGTGAACA+AGG | + | tig0041587:10766-10785 | Msa1461570:CDS | 40.0% |
| GTATACAAATGAGGCTGATG+TGG | - | tig0041587:10927-10946 | None:intergenic | 40.0% | |
| GTTACCACAATCGAAAACCT+TGG | + | tig0041587:10982-11001 | Msa1461570:intron | 40.0% | |
| ! | ACAACCAAGGTTTTCGATTG+TGG | - | tig0041587:10989-11008 | None:intergenic | 40.0% |
| CGTGATAAAACGAACAACCA+AGG | - | tig0041587:11002-11021 | None:intergenic | 40.0% | |
| GCACTAACGGTGTGAATTTA+GGG | - | tig0041587:11057-11076 | None:intergenic | 40.0% | |
| TGCACTAACGGTGTGAATTT+AGG | - | tig0041587:11058-11077 | None:intergenic | 40.0% | |
| TGTGCTAGATTTACTGGTGT+GGG | - | tig0041587:11326-11345 | None:intergenic | 40.0% | |
| TTGTGCTAGATTTACTGGTG+TGG | - | tig0041587:11327-11346 | None:intergenic | 40.0% | |
| GCATGTTGTGCTAGATTTAC+TGG | - | tig0041587:11332-11351 | None:intergenic | 40.0% | |
| ATCTAGCACAACATGCATAC+TGG | + | tig0041587:11336-11355 | Msa1461570:CDS | 40.0% | |
| TAAGAATGTCACCACTGTTG+TGG | - | tig0041587:11373-11392 | None:intergenic | 40.0% | |
| TTTATCATCTACCGGTGTGA+TGG | - | tig0041587:11423-11442 | None:intergenic | 40.0% | |
| GGGATGAGTTTATCATCTAC+CGG | - | tig0041587:11431-11450 | None:intergenic | 40.0% | |
| GATGATAAACTCATCCCAAC+AGG | + | tig0041587:11434-11453 | Msa1461570:CDS | 40.0% | |
| ATCATATGGCGTGTTCTTCA+CGG | - | tig0041587:11471-11490 | None:intergenic | 40.0% | |
| AACTACGCAATTGACGTGAA+TGG | + | tig0041587:11551-11570 | Msa1461570:CDS | 40.0% | |
| ATAGTGAAAGAACCTGTCTC+AGG | + | tig0041587:11599-11618 | Msa1461570:CDS | 40.0% | |
| GGAGCTACATATCACAAGTA+TGG | + | tig0041587:11704-11723 | Msa1461570:CDS | 40.0% | |
| GCTACATATCACAAGTATGG+TGG | + | tig0041587:11707-11726 | Msa1461570:CDS | 40.0% | |
| ATATGCTTGTATGTCTCTCC+AGG | - | tig0041587:11803-11822 | None:intergenic | 40.0% | |
| AATGTGCATAAGTGTGAACC+AGG | - | tig0041587:9977-9996 | None:intergenic | 40.0% | |
| AAAGTGGCTGATGTTGTTCT+TGG | + | tig0041587:10208-10227 | Msa1461570:CDS | 40.0% | |
| !! | TCTACTTCGGTGGTCTTATT+GGG | + | tig0041587:10460-10479 | Msa1461570:CDS | 40.0% |
| ATGGAAAGTAGCAGTTCACA+AGG | + | tig0041587:10717-10736 | Msa1461570:CDS | 40.0% | |
| TTCACCATCAAAACTGTGGT+AGG | - | tig0041587:10764-10783 | None:intergenic | 40.0% | |
| CTTGTTCACCATCAAAACTG+TGG | - | tig0041587:10768-10787 | None:intergenic | 40.0% | |
| !!! | CACAGTTTTGATGGTGAACA+AGG | + | tig0041587:10766-10785 | Msa1461570:CDS | 40.0% |
| GTATACAAATGAGGCTGATG+TGG | - | tig0041587:10927-10946 | None:intergenic | 40.0% | |
| GTTACCACAATCGAAAACCT+TGG | + | tig0041587:10982-11001 | Msa1461570:intron | 40.0% | |
| ! | ACAACCAAGGTTTTCGATTG+TGG | - | tig0041587:10989-11008 | None:intergenic | 40.0% |
| CGTGATAAAACGAACAACCA+AGG | - | tig0041587:11002-11021 | None:intergenic | 40.0% | |
| GCACTAACGGTGTGAATTTA+GGG | - | tig0041587:11057-11076 | None:intergenic | 40.0% | |
| TGCACTAACGGTGTGAATTT+AGG | - | tig0041587:11058-11077 | None:intergenic | 40.0% | |
| TGTGCTAGATTTACTGGTGT+GGG | - | tig0041587:11326-11345 | None:intergenic | 40.0% | |
| TTGTGCTAGATTTACTGGTG+TGG | - | tig0041587:11327-11346 | None:intergenic | 40.0% | |
| GCATGTTGTGCTAGATTTAC+TGG | - | tig0041587:11332-11351 | None:intergenic | 40.0% | |
| ATCTAGCACAACATGCATAC+TGG | + | tig0041587:11336-11355 | Msa1461570:CDS | 40.0% | |
| TAAGAATGTCACCACTGTTG+TGG | - | tig0041587:11373-11392 | None:intergenic | 40.0% | |
| TTTATCATCTACCGGTGTGA+TGG | - | tig0041587:11423-11442 | None:intergenic | 40.0% | |
| GGGATGAGTTTATCATCTAC+CGG | - | tig0041587:11431-11450 | None:intergenic | 40.0% | |
| GATGATAAACTCATCCCAAC+AGG | + | tig0041587:11434-11453 | Msa1461570:CDS | 40.0% | |
| ATCATATGGCGTGTTCTTCA+CGG | - | tig0041587:11471-11490 | None:intergenic | 40.0% | |
| AACTACGCAATTGACGTGAA+TGG | + | tig0041587:11551-11570 | Msa1461570:CDS | 40.0% | |
| ATAGTGAAAGAACCTGTCTC+AGG | + | tig0041587:11599-11618 | Msa1461570:CDS | 40.0% | |
| GGAGCTACATATCACAAGTA+TGG | + | tig0041587:11704-11723 | Msa1461570:CDS | 40.0% | |
| GCTACATATCACAAGTATGG+TGG | + | tig0041587:11707-11726 | Msa1461570:CDS | 40.0% | |
| ATATGCTTGTATGTCTCTCC+AGG | - | tig0041587:11803-11822 | None:intergenic | 40.0% | |
| CAGACTGATGGAGTCTACTT+CGG | + | tig0041587:10447-10466 | Msa1461570:intron | 45.0% | |
| !! | GTCTACTTCGGTGGTCTTAT+TGG | + | tig0041587:10459-10478 | Msa1461570:CDS | 45.0% |
| TTATTGGGCGTGTGGCAAAT+AGG | + | tig0041587:10475-10494 | Msa1461570:CDS | 45.0% | |
| TGGAGGAGCTCAATTCACTT+TGG | + | tig0041587:10500-10519 | Msa1461570:CDS | 45.0% | |
| GGAGCTCAATTCACTTTGGA+TGG | + | tig0041587:10504-10523 | Msa1461570:CDS | 45.0% | |
| GTGTTCCCATGATCATTAGC+TGG | - | tig0041587:10546-10565 | None:intergenic | 45.0% | |
| AAATTGCAGGTGGCCAGAAA+GGG | + | tig0041587:10680-10699 | Msa1461570:intron | 45.0% | |
| !! | AAGGGTTCGGTGATAACGTA+TGG | + | tig0041587:10698-10717 | Msa1461570:CDS | 45.0% |
| GACAGTCATCGATGCACTAA+CGG | - | tig0041587:11070-11089 | None:intergenic | 45.0% | |
| ACACTTACGTCAAGCTTTCC+AGG | - | tig0041587:11239-11258 | None:intergenic | 45.0% | |
| ! | TGTGGGTTTGTTTACTGGCT+TGG | - | tig0041587:11309-11328 | None:intergenic | 45.0% |
| ! | ACTGGTGTGGGTTTGTTTAC+TGG | - | tig0041587:11314-11333 | None:intergenic | 45.0% |
| CAACATGCATACTGGAACCT+AGG | + | tig0041587:11344-11363 | Msa1461570:CDS | 45.0% | |
| ! | CTTTGGTTCATCCATCACAC+CGG | + | tig0041587:11409-11428 | Msa1461570:CDS | 45.0% |
| TGAAAGAACCTGTCTCAGGA+AGG | + | tig0041587:11603-11622 | Msa1461570:CDS | 45.0% | |
| ACCTGTCTCAGGAAGGAAAA+TGG | + | tig0041587:11610-11629 | Msa1461570:CDS | 45.0% | |
| ! | TCCATTTTCCTTCCTGAGAC+AGG | - | tig0041587:11614-11633 | None:intergenic | 45.0% |
| CAGGAAGGAAAATGGAGTTG+TGG | + | tig0041587:11618-11637 | Msa1461570:CDS | 45.0% | |
| GAGTTGTGGTCAAACCAAGT+TGG | + | tig0041587:11632-11651 | Msa1461570:CDS | 45.0% | |
| CAAGTATGGTGGCATTGCTT+TGG | + | tig0041587:11718-11737 | Msa1461570:CDS | 45.0% | |
| CAGACTGATGGAGTCTACTT+CGG | + | tig0041587:10447-10466 | Msa1461570:intron | 45.0% | |
| !! | GTCTACTTCGGTGGTCTTAT+TGG | + | tig0041587:10459-10478 | Msa1461570:CDS | 45.0% |
| TTATTGGGCGTGTGGCAAAT+AGG | + | tig0041587:10475-10494 | Msa1461570:CDS | 45.0% | |
| TGGAGGAGCTCAATTCACTT+TGG | + | tig0041587:10500-10519 | Msa1461570:CDS | 45.0% | |
| GGAGCTCAATTCACTTTGGA+TGG | + | tig0041587:10504-10523 | Msa1461570:CDS | 45.0% | |
| GTGTTCCCATGATCATTAGC+TGG | - | tig0041587:10546-10565 | None:intergenic | 45.0% | |
| AAATTGCAGGTGGCCAGAAA+GGG | + | tig0041587:10680-10699 | Msa1461570:intron | 45.0% | |
| !! | AAGGGTTCGGTGATAACGTA+TGG | + | tig0041587:10698-10717 | Msa1461570:CDS | 45.0% |
| GACAGTCATCGATGCACTAA+CGG | - | tig0041587:11070-11089 | None:intergenic | 45.0% | |
| ACACTTACGTCAAGCTTTCC+AGG | - | tig0041587:11239-11258 | None:intergenic | 45.0% | |
| ! | TGTGGGTTTGTTTACTGGCT+TGG | - | tig0041587:11309-11328 | None:intergenic | 45.0% |
| ! | ACTGGTGTGGGTTTGTTTAC+TGG | - | tig0041587:11314-11333 | None:intergenic | 45.0% |
| CAACATGCATACTGGAACCT+AGG | + | tig0041587:11344-11363 | Msa1461570:CDS | 45.0% | |
| ! | CTTTGGTTCATCCATCACAC+CGG | + | tig0041587:11409-11428 | Msa1461570:CDS | 45.0% |
| TGAAAGAACCTGTCTCAGGA+AGG | + | tig0041587:11603-11622 | Msa1461570:CDS | 45.0% | |
| ACCTGTCTCAGGAAGGAAAA+TGG | + | tig0041587:11610-11629 | Msa1461570:CDS | 45.0% | |
| ! | TCCATTTTCCTTCCTGAGAC+AGG | - | tig0041587:11614-11633 | None:intergenic | 45.0% |
| CAGGAAGGAAAATGGAGTTG+TGG | + | tig0041587:11618-11637 | Msa1461570:CDS | 45.0% | |
| GAGTTGTGGTCAAACCAAGT+TGG | + | tig0041587:11632-11651 | Msa1461570:CDS | 45.0% | |
| CAAGTATGGTGGCATTGCTT+TGG | + | tig0041587:11718-11737 | Msa1461570:CDS | 45.0% | |
| ! | ACAACATCAGCCACTTTCCC+TGG | - | tig0041587:10205-10224 | None:intergenic | 50.0% |
| ACTGATGGAGTCTACTTCGG+TGG | + | tig0041587:10450-10469 | Msa1461570:CDS | 50.0% | |
| CGTGTGGCAAATAGGATTGG+AGG | + | tig0041587:10483-10502 | Msa1461570:CDS | 50.0% | |
| GATCATGGGAACACACTCCA+TGG | + | tig0041587:10552-10571 | Msa1461570:CDS | 50.0% | |
| GAAATTGCAGGTGGCCAGAA+AGG | + | tig0041587:10679-10698 | Msa1461570:intron | 50.0% | |
| CGTTATCACCGAACCCTTTC+TGG | - | tig0041587:10696-10715 | None:intergenic | 50.0% | |
| TGTTGCTGCGACTGCGTTTA+AGG | + | tig0041587:10901-10920 | Msa1461570:intron | 50.0% | |
| CATGCATACTGGAACCTAGG+AGG | + | tig0041587:11347-11366 | Msa1461570:CDS | 50.0% | |
| ! | CGGATTCGAGTTTGCCTGTT+GGG | - | tig0041587:11451-11470 | None:intergenic | 50.0% |
| ! | ACGGATTCGAGTTTGCCTGT+TGG | - | tig0041587:11452-11471 | None:intergenic | 50.0% |
| !! | GGCATTGCTTTGGAGACACA+AGG | + | tig0041587:11728-11747 | Msa1461570:CDS | 50.0% |
| CCAGGCTTCACAATCTGAGA+TGG | - | tig0041587:11785-11804 | None:intergenic | 50.0% | |
| CCATCTCAGATTGTGAAGCC+TGG | + | tig0041587:11782-11801 | Msa1461570:CDS | 50.0% | |
| ! | ACAACATCAGCCACTTTCCC+TGG | - | tig0041587:10205-10224 | None:intergenic | 50.0% |
| ACTGATGGAGTCTACTTCGG+TGG | + | tig0041587:10450-10469 | Msa1461570:CDS | 50.0% | |
| CGTGTGGCAAATAGGATTGG+AGG | + | tig0041587:10483-10502 | Msa1461570:CDS | 50.0% | |
| GATCATGGGAACACACTCCA+TGG | + | tig0041587:10552-10571 | Msa1461570:CDS | 50.0% | |
| GAAATTGCAGGTGGCCAGAA+AGG | + | tig0041587:10679-10698 | Msa1461570:intron | 50.0% | |
| CGTTATCACCGAACCCTTTC+TGG | - | tig0041587:10696-10715 | None:intergenic | 50.0% | |
| TGTTGCTGCGACTGCGTTTA+AGG | + | tig0041587:10901-10920 | Msa1461570:intron | 50.0% | |
| CATGCATACTGGAACCTAGG+AGG | + | tig0041587:11347-11366 | Msa1461570:CDS | 50.0% | |
| ! | CGGATTCGAGTTTGCCTGTT+GGG | - | tig0041587:11451-11470 | None:intergenic | 50.0% |
| ! | ACGGATTCGAGTTTGCCTGT+TGG | - | tig0041587:11452-11471 | None:intergenic | 50.0% |
| !! | GGCATTGCTTTGGAGACACA+AGG | + | tig0041587:11728-11747 | Msa1461570:CDS | 50.0% |
| CCAGGCTTCACAATCTGAGA+TGG | - | tig0041587:11785-11804 | None:intergenic | 50.0% | |
| CCATCTCAGATTGTGAAGCC+TGG | + | tig0041587:11782-11801 | Msa1461570:CDS | 50.0% | |
| GGGCGTGTGGCAAATAGGAT+TGG | + | tig0041587:10480-10499 | Msa1461570:CDS | 55.0% | |
| AACCTAGGAGGCCACAACAG+TGG | + | tig0041587:11359-11378 | Msa1461570:CDS | 55.0% | |
| GGGCGTGTGGCAAATAGGAT+TGG | + | tig0041587:10480-10499 | Msa1461570:CDS | 55.0% | |
| AACCTAGGAGGCCACAACAG+TGG | + | tig0041587:11359-11378 | Msa1461570:CDS | 55.0% | |
| TTGTGTCCTCTTGGGGCTCC+TGG | + | tig0041587:9956-9975 | Msa1461570:CDS | 60.0% | |
| TGTGAACCAGGAGCCCCAAG+AGG | - | tig0041587:9965-9984 | None:intergenic | 60.0% | |
| !! | CGGTGGTCTTATTGGGCGTG+TGG | + | tig0041587:10467-10486 | Msa1461570:CDS | 60.0% |
| GCAGGTGGCCAGAAAGGGTT+CGG | + | tig0041587:10685-10704 | Msa1461570:intron | 60.0% | |
| CACCACTGTTGTGGCCTCCT+AGG | - | tig0041587:11364-11383 | None:intergenic | 60.0% | |
| TTGTGTCCTCTTGGGGCTCC+TGG | + | tig0041587:9956-9975 | Msa1461570:CDS | 60.0% | |
| TGTGAACCAGGAGCCCCAAG+AGG | - | tig0041587:9965-9984 | None:intergenic | 60.0% | |
| !! | CGGTGGTCTTATTGGGCGTG+TGG | + | tig0041587:10467-10486 | Msa1461570:CDS | 60.0% |
| GCAGGTGGCCAGAAAGGGTT+CGG | + | tig0041587:10685-10704 | Msa1461570:intron | 60.0% | |
| CACCACTGTTGTGGCCTCCT+AGG | - | tig0041587:11364-11383 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041587 | gene | 9742 | 12008 | 9742 | ID=Msa1461570;Name=Msa1461570 |
| tig0041587 | mRNA | 9742 | 12008 | 9742 | ID=Msa1461570-mRNA-1;Parent=Msa1461570;Name=Msa1461570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=191|1|1|1|1|1|5|158|358 |
| tig0041587 | exon | 9742 | 10116 | 9742 | ID=Msa1461570-mRNA-1:exon:23226;Parent=Msa1461570-mRNA-1 |
| tig0041587 | exon | 10206 | 10255 | 10206 | ID=Msa1461570-mRNA-1:exon:23227;Parent=Msa1461570-mRNA-1 |
| tig0041587 | exon | 10450 | 10573 | 10450 | ID=Msa1461570-mRNA-1:exon:23228;Parent=Msa1461570-mRNA-1 |
| tig0041587 | exon | 10689 | 10787 | 10689 | ID=Msa1461570-mRNA-1:exon:23229;Parent=Msa1461570-mRNA-1 |
| tig0041587 | exon | 11231 | 12008 | 11231 | ID=Msa1461570-mRNA-1:exon:23230;Parent=Msa1461570-mRNA-1 |
| tig0041587 | five_prime_UTR | 9742 | 9932 | 9742 | ID=Msa1461570-mRNA-1:five_prime_utr;Parent=Msa1461570-mRNA-1 |
| tig0041587 | CDS | 9933 | 10116 | 9933 | ID=Msa1461570-mRNA-1:cds;Parent=Msa1461570-mRNA-1 |
| tig0041587 | CDS | 10206 | 10255 | 10206 | ID=Msa1461570-mRNA-1:cds;Parent=Msa1461570-mRNA-1 |
| tig0041587 | CDS | 10450 | 10573 | 10450 | ID=Msa1461570-mRNA-1:cds;Parent=Msa1461570-mRNA-1 |
| tig0041587 | CDS | 10689 | 10787 | 10689 | ID=Msa1461570-mRNA-1:cds;Parent=Msa1461570-mRNA-1 |
| tig0041587 | CDS | 11231 | 11850 | 11231 | ID=Msa1461570-mRNA-1:cds;Parent=Msa1461570-mRNA-1 |
| tig0041587 | three_prime_UTR | 11851 | 12008 | 11851 | ID=Msa1461570-mRNA-1:three_prime_utr;Parent=Msa1461570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
