AlfalfaGEDB | Msa0663910

M. sativa cultivar zhongmu-4 / Msa0663910

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896
PFAM: PF00226.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663910	XP_003604269.1	92.547	161	7	2	1	156	1	161	4.68e-103	302

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663910	sp\|Q9SAG8\|DNAJ8_ARATH	62.727	110	40	1	46	155	54	162	7.83e-47	152

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663910	B7FGF7	92.547	161	7	2	1	156	1	161	2.24e-103	302

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017320	Msa0663910	0.805780	1.131525e-49	-8.615850e-47
Msa0020390	Msa0663910	0.831759	1.391433e-55	-8.615850e-47
Msa0081650	Msa0663910	0.802981	4.334963e-49	-8.615850e-47
Msa0090570	Msa0663910	0.808507	2.993635e-50	-8.615850e-47
Msa0109590	Msa0663910	0.805172	1.517807e-49	-8.615850e-47
Msa0118540	Msa0663910	0.867061	1.806686e-65	-8.615850e-47
Msa0609220	Msa0663910	0.806263	8.955945e-50	-8.615850e-47
Msa0615680	Msa0663910	0.822717	2.039833e-53	-8.615850e-47
Msa0626020	Msa0663910	0.935698	5.624885e-97	-8.615850e-47
Msa0626850	Msa0663910	0.811319	7.428203e-51	-8.615850e-47
Msa0663910	Msa0664970	0.806710	7.207768e-50	-8.615850e-47
Msa0663910	Msa0669720	0.831646	1.483836e-55	-8.615850e-47
Msa0663910	Msa0669760	0.814139	1.793895e-51	-8.615850e-47
Msa0663910	Msa0748920	0.840144	1.038029e-57	-8.615850e-47
Msa0663910	Msa0794050	0.804639	1.961081e-49	-8.615850e-47
Msa0663910	Msa0901110	0.845042	5.196901e-59	-8.615850e-47
Msa0663910	Msa0944610	0.803673	3.115735e-49	-8.615850e-47
Msa0663910	Msa0974810	0.806410	8.338358e-50	-8.615850e-47
Msa0663910	Msa0994370	0.815925	7.200441e-52	-8.615850e-47
Msa0663910	Msa1000930	0.835484	1.633196e-56	-8.615850e-47
Msa0663910	Msa1037420	0.803696	3.081888e-49	-8.615850e-47
Msa0663910	Msa1070390	0.806015	1.010046e-49	-8.615850e-47
Msa0663910	Msa1107160	0.813000	3.193064e-51	-8.615850e-47
Msa0663910	Msa1123810	0.800850	1.187884e-48	-8.615850e-47
Msa0663910	Msa1150710	0.801204	1.005627e-48	-8.615850e-47
Msa0663910	Msa1206270	0.837612	4.690707e-57	-8.615850e-47
Msa0663910	Msa1206290	0.834334	3.183326e-56	-8.615850e-47
Msa0663910	Msa1210120	0.822666	2.096576e-53	-8.615850e-47
Msa0663910	Msa1256810	0.817328	3.490434e-52	-8.615850e-47
Msa0663910	Msa1265590	0.801054	1.079167e-48	-8.615850e-47
Msa0663910	Msa1355890	0.809093	2.244030e-50	-8.615850e-47
Msa0663910	Msa1359270	0.816887	4.386899e-52	-8.615850e-47
Msa0663910	Msa1454450	0.807426	5.085360e-50	-8.615850e-47
Msa0663910	Msa1460320	-0.809848	1.544400e-50	-8.615850e-47
Msa0145150	Msa0663910	0.801799	7.591769e-49	-8.615850e-47
Msa0167980	Msa0663910	0.811778	5.905400e-51	-8.615850e-47
Msa0183850	Msa0663910	0.827525	1.491101e-54	-8.615850e-47
Msa0233370	Msa0663910	0.812977	3.231256e-51	-8.615850e-47
Msa0379570	Msa0663910	0.803161	3.978687e-49	-8.615850e-47
Msa0436190	Msa0663910	0.800162	1.640263e-48	-8.615850e-47
Msa0296820	Msa0663910	0.805103	1.569082e-49	-8.615850e-47
Msa0320430	Msa0663910	0.818744	1.670634e-52	-8.615850e-47
Msa0518960	Msa0663910	0.802521	5.393533e-49	-8.615850e-47
Msa0524600	Msa0663910	0.801542	8.571400e-49	-8.615850e-47
Msa0585970	Msa0663910	0.848584	5.583305e-60	-8.615850e-47
Msa0587030	Msa0663910	0.807623	4.617716e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663910	MtrunA17_Chr4g0001611	92.547	161	7	2	1	156	1	161	4.31e-107	302

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663910	AT1G80920.1	62.727	110	40	1	46	155	54	162	7.96e-48	152
Msa0663910	AT5G59610.1	29.167	144	86	3	11	144	43	180	5.43e-13	65.1
Msa0663910	AT5G59610.4	29.167	144	86	3	11	144	43	180	5.43e-13	65.1

Find 70 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTTGTAACCAAACCTATTC+TGG	0.118254	4_4:-2837465	Msa0663910:five_prime_UTR
ACTACTGCTGTTGGTGTTAT+TGG	0.156544	4_4:-2837222	Msa0663910:CDS
ATTGAAGTTGAGAGGATATT+TGG	0.182627	4_4:-2835955	Msa0663910:three_prime_UTR
CCTTTAAGACAAAACTCTTC+TGG	0.231115	4_4:-2837405	Msa0663910:five_prime_UTR
CAAAGAGCACCAACCAAATT+TGG	0.237220	4_4:+2836021	None:intergenic
GTGTTAAATATTTCAAAGTT+TGG	0.284170	4_4:-2837368	Msa0663910:five_prime_UTR
ATGATCCAGATTGGGGCTAT+TGG	0.284504	4_4:-2836194	Msa0663910:CDS
GGATTTGTATTTATAGAAAT+AGG	0.284802	4_4:+2837698	None:intergenic
TGAATTCTCAAAGTCTTATA+AGG	0.285846	4_4:+2837090	None:intergenic
AATAAAACCACCTCAAAGTT+TGG	0.298635	4_4:-2837490	Msa0663910:five_prime_UTR
AAAATAAGATGAATAAAGTT+AGG	0.311546	4_4:-2837152	Msa0663910:CDS
AATCATTATTTATTAGTGTT+TGG	0.330931	4_4:-2837589	Msa0663910:five_prime_UTR
CATAAACTTTATTAAATGTA+AGG	0.334186	4_4:+2836114	None:intergenic
TGTGTTCTTATCTTAAAGTT+TGG	0.337765	4_4:-2837429	Msa0663910:five_prime_UTR
CTTGTTTATAAGATTCCATT+TGG	0.340253	4_4:+2835864	None:intergenic
GTAATGGATCTTGTGTTTCA+TGG	0.354259	4_4:-2837197	Msa0663910:CDS
TCTCTTCCTTTGCACACATC+TGG	0.358215	4_4:+2836849	None:intergenic
TTAGTTATTATGTGTGAAAT+CGG	0.370612	4_4:+2837744	None:intergenic
TGATCCAGATTGGGGCTATT+GGG	0.375755	4_4:-2836193	Msa0663910:CDS
GTTGGTGTTATTGGTGGTAA+TGG	0.380315	4_4:-2837213	Msa0663910:CDS
CTGTTTCTTCTTTATCCAAA+TGG	0.386265	4_4:-2835879	Msa0663910:three_prime_UTR
GACAATGATGAGTCATTTAG+AGG	0.388181	4_4:-2836222	Msa0663910:CDS
CTTTAAGACAAAACTCTTCT+GGG	0.391008	4_4:-2837404	Msa0663910:five_prime_UTR
TGTTTCATGGATTGGAAGAA+AGG	0.400791	4_4:-2837184	Msa0663910:CDS
TCTTCCCAATAGCCCCAATC+TGG	0.418268	4_4:+2836189	None:intergenic
TTTGTAACCAAACCTATTCT+GGG	0.422263	4_4:-2837464	Msa0663910:five_prime_UTR
GGGCTATTGGGAAGAATGGA+TGG	0.423463	4_4:-2836181	Msa0663910:CDS
GAGGAATGAATGATCCAGAT+TGG	0.426354	4_4:-2836203	Msa0663910:CDS
ACAATGACCCAGAATAGGTT+TGG	0.430276	4_4:+2837457	None:intergenic
AGGAATGAATGATCCAGATT+GGG	0.438090	4_4:-2836202	Msa0663910:CDS
AATTCACAATGACCCAGAAT+AGG	0.445431	4_4:+2837452	None:intergenic
GATTGAAGAGATTGAAGAAA+GGG	0.453780	4_4:+2837677	None:intergenic
ATCATTGTCTTCATTATATG+TGG	0.460660	4_4:+2836236	None:intergenic
GGATCTTGTGTTTCATGGAT+TGG	0.460943	4_4:-2837192	Msa0663910:CDS
ATTGGGGCTATTGGGAAGAA+TGG	0.464008	4_4:-2836185	Msa0663910:CDS
TTCTGAATCTGATGTTAGAA+AGG	0.473384	4_4:-2837058	Msa0663910:CDS
AAATAAGATGAATAAAGTTA+GGG	0.476392	4_4:-2837151	Msa0663910:CDS
ATCTAAATCTTCTTCTGTGA+TGG	0.478827	4_4:-2837115	Msa0663910:CDS
TTGGGAAGAATGGATGGGTT+GGG	0.486704	4_4:-2836175	Msa0663910:CDS
ATTGGGAAGAATGGATGGGT+TGG	0.503999	4_4:-2836176	Msa0663910:CDS
TTCCTTTGCACACATCTGGA+TGG	0.515608	4_4:+2836853	None:intergenic
TTACAAAGAACCAAACTTTG+AGG	0.519100	4_4:+2837480	None:intergenic
GTCACGTTTGCATCAATCAA+TGG	0.519392	4_4:-2837774	Msa0663910:five_prime_UTR
ACTGCTGTTGGTGTTATTGG+TGG	0.520448	4_4:-2837219	Msa0663910:CDS
GGCTATTGGGAAGAATGGAT+GGG	0.528910	4_4:-2836180	Msa0663910:CDS
GTGTGCAAAGGAAGAGATTG+TGG	0.529500	4_4:-2836843	Msa0663910:CDS
GAGCACCAACCAAATTTGGA+TGG	0.537248	4_4:+2836025	None:intergenic
AGATATGACATACATTAACT+TGG	0.538717	4_4:+2835988	None:intergenic
TGATTGAAGAGATTGAAGAA+AGG	0.546658	4_4:+2837676	None:intergenic
AGCACCAACCAAATTTGGAT+GGG	0.548146	4_4:+2836026	None:intergenic
GAAGAATGGATGGGTTGGGA+AGG	0.548816	4_4:-2836171	Msa0663910:CDS
TGGATGGGTTGGGAAGGAGC+AGG	0.559751	4_4:-2836165	Msa0663910:CDS
TCTCAACTTCAATTATGTTG+AGG	0.560994	4_4:+2835965	None:intergenic
TGTGCAAAGGAAGAGATTGT+GGG	0.575497	4_4:-2836842	Msa0663910:CDS
GCAGTTTCACTTAATCAATG+AGG	0.585631	4_4:-2836817	Msa0663910:CDS
AATGGAATCTTATAAACAAG+AGG	0.587710	4_4:-2835861	Msa0663910:three_prime_UTR
ATGGCTGCTACTACTGCTGT+TGG	0.598684	4_4:-2837231	Msa0663910:CDS
TCAACATAATTGAAGTTGAG+AGG	0.598925	4_4:-2835963	Msa0663910:three_prime_UTR
GCACCAACCAAATTTGGATG+GGG	0.605222	4_4:+2836027	None:intergenic
CAAAGAACCAAACTTTGAGG+TGG	0.605813	4_4:+2837483	None:intergenic
GGTTGAAGAACAAAATAGAG+TGG	0.607277	4_4:+2837631	None:intergenic
TACCATCCAGATGTGTGCAA+AGG	0.620033	4_4:-2836855	Msa0663910:CDS
TAATATGAGAAGAGTAGTCA+CGG	0.620194	4_4:+2836139	None:intergenic
TAGAATTGGAACAATGGGCA+CGG	0.629877	4_4:+2837534	None:intergenic
GGAATGAATGATCCAGATTG+GGG	0.639140	4_4:-2836201	Msa0663910:CDS
TGATTGATGCAAACGTGACG+TGG	0.641491	4_4:+2837778	None:intergenic
ACATCAGATTCAGAAGCACC+AGG	0.654245	4_4:+2837066	None:intergenic
CACCAACCAAATTTGGATGG+GGG	0.668622	4_4:+2836028	None:intergenic
AAGACTTTGAGAATTCAACC+TGG	0.677099	4_4:-2837084	Msa0663910:CDS
GTGCAAAGGAAGAGATTGTG+GGG	0.740567	4_4:-2836841	Msa0663910:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTAACAAAAAAAAATTC+TGG	-	chr4_4:2836303-2836322	Msa0663910:intron	10.0%
!!!	TTTTAACAAAAAAAAATTCT+GGG	-	chr4_4:2836304-2836323	Msa0663910:intron	10.0%
!!	ATGTATTAATATTGAATATT+TGG	-	chr4_4:2836748-2836767	Msa0663910:intron	10.0%
!!	TGTATTAATATTGAATATTT+GGG	-	chr4_4:2836749-2836768	Msa0663910:intron	10.0%
!!	AATTTATTGTTATAATTGTT+TGG	-	chr4_4:2836912-2836931	Msa0663910:intron	10.0%
!!	ATTTATTGTTATAATTGTTT+GGG	-	chr4_4:2836913-2836932	Msa0663910:intron	10.0%
!!!	TTTTAGATCATAAAAATATA+TGG	-	chr4_4:2836947-2836966	Msa0663910:intron	10.0%
!!!	TTTTTAACAAAAAAAAATTC+TGG	-	chr4_4:2836303-2836322	Msa0663910:intron	10.0%
!!!	TTTTAACAAAAAAAAATTCT+GGG	-	chr4_4:2836304-2836323	Msa0663910:intron	10.0%
!!	ATGTATTAATATTGAATATT+TGG	-	chr4_4:2836748-2836767	Msa0663910:intron	10.0%
!!	TGTATTAATATTGAATATTT+GGG	-	chr4_4:2836749-2836768	Msa0663910:intron	10.0%
!!	AATTTATTGTTATAATTGTT+TGG	-	chr4_4:2836912-2836931	Msa0663910:intron	10.0%
!!	ATTTATTGTTATAATTGTTT+GGG	-	chr4_4:2836913-2836932	Msa0663910:intron	10.0%
!!!	TTTTAGATCATAAAAATATA+TGG	-	chr4_4:2836947-2836966	Msa0663910:intron	10.0%
!!	AATCATTATTTATTAGTGTT+TGG	-	chr4_4:2836056-2836075	Msa0663910:three_prime_UTR	15.0%
!!!	TTTATAACAAAGAGTTTTTT+GGG	-	chr4_4:2836366-2836385	Msa0663910:intron	15.0%
!!	AAAATAAGATGAATAAAGTT+AGG	-	chr4_4:2836493-2836512	Msa0663910:intron	15.0%
!!	AAATAAGATGAATAAAGTTA+GGG	-	chr4_4:2836494-2836513	Msa0663910:intron	15.0%
!!!	TTTTTTATTGTTTATGGTTT+TGG	-	chr4_4:2837115-2837134	Msa0663910:CDS	15.0%
!!!	AATTTGTTTTTATCTTCTTA+TGG	-	chr4_4:2837248-2837267	Msa0663910:exon	15.0%
!!!	ATTTGTTTTTATCTTCTTAT+GGG	-	chr4_4:2837249-2837268	Msa0663910:exon	15.0%
!!	CATAAATTTCAATTAGATAA+TGG	+	chr4_4:2837316-2837335	None:intergenic	15.0%
!!	CATAAACTTTATTAAATGTA+AGG	+	chr4_4:2837534-2837553	None:intergenic	15.0%
!!	AATCATTATTTATTAGTGTT+TGG	-	chr4_4:2836056-2836075	Msa0663910:three_prime_UTR	15.0%
!!!	TTTATAACAAAGAGTTTTTT+GGG	-	chr4_4:2836366-2836385	Msa0663910:intron	15.0%
!!	AAAATAAGATGAATAAAGTT+AGG	-	chr4_4:2836493-2836512	Msa0663910:intron	15.0%
!!	AAATAAGATGAATAAAGTTA+GGG	-	chr4_4:2836494-2836513	Msa0663910:intron	15.0%
!!!	TTTTTTATTGTTTATGGTTT+TGG	-	chr4_4:2837115-2837134	Msa0663910:CDS	15.0%
!!!	AATTTGTTTTTATCTTCTTA+TGG	-	chr4_4:2837248-2837267	Msa0663910:exon	15.0%
!!!	ATTTGTTTTTATCTTCTTAT+GGG	-	chr4_4:2837249-2837268	Msa0663910:exon	15.0%
!!	CATAAATTTCAATTAGATAA+TGG	+	chr4_4:2837316-2837335	None:intergenic	15.0%
!!	CATAAACTTTATTAAATGTA+AGG	+	chr4_4:2837534-2837553	None:intergenic	15.0%
!!	TTAGTTATTATGTGTGAAAT+CGG	+	chr4_4:2835904-2835923	None:intergenic	20.0%
!!	GGATTTGTATTTATAGAAAT+AGG	+	chr4_4:2835950-2835969	None:intergenic	20.0%
!!!	GAAGATATTGTTTTTAGAAT+TGG	+	chr4_4:2836128-2836147	None:intergenic	20.0%
!!	GTGTTAAATATTTCAAAGTT+TGG	-	chr4_4:2836277-2836296	Msa0663910:CDS	20.0%
!!	GAGTTAGATATAAAAAAGTT+TGG	-	chr4_4:2836340-2836359	Msa0663910:intron	20.0%
!!!	CTTTATAACAAAGAGTTTTT+TGG	-	chr4_4:2836365-2836384	Msa0663910:intron	20.0%
!!!	AGAATTTGTGATTTTAAGAA+TGG	-	chr4_4:2836395-2836414	Msa0663910:intron	20.0%
!!!	ACTAATTTGATTGATGATTT+TGG	-	chr4_4:2836659-2836678	Msa0663910:intron	20.0%
!!	AACTATGCAATGAAAATTAA+AGG	+	chr4_4:2836892-2836911	None:intergenic	20.0%
!!!	GTTGTTTTATTTCAAATCAA+TGG	+	chr4_4:2837048-2837067	None:intergenic	20.0%
!!	ACAATAAAAAAAACTGGATT+TGG	+	chr4_4:2837106-2837125	None:intergenic	20.0%
!!	CCATAAACAATAAAAAAAAC+TGG	+	chr4_4:2837112-2837131	None:intergenic	20.0%
!!!	CCAGTTTTTTTTATTGTTTA+TGG	-	chr4_4:2837109-2837128	Msa0663910:CDS	20.0%
!!	GTTTATCAAGTTATAAATCT+TGG	+	chr4_4:2837152-2837171	None:intergenic	20.0%
!!	TCAAACAAATCATTAAACTA+TGG	+	chr4_4:2837276-2837295	None:intergenic	20.0%
!!!	AATTTATGTGTTGCTTATAT+TGG	-	chr4_4:2837328-2837347	Msa0663910:five_prime_UTR	20.0%
!!!	TTTTACATTTTCTCTCAAAT+TGG	+	chr4_4:2837373-2837392	None:intergenic	20.0%
!!	TTAGTTATTATGTGTGAAAT+CGG	+	chr4_4:2835904-2835923	None:intergenic	20.0%
!!	GGATTTGTATTTATAGAAAT+AGG	+	chr4_4:2835950-2835969	None:intergenic	20.0%
!!!	GAAGATATTGTTTTTAGAAT+TGG	+	chr4_4:2836128-2836147	None:intergenic	20.0%
!!	GTGTTAAATATTTCAAAGTT+TGG	-	chr4_4:2836277-2836296	Msa0663910:CDS	20.0%
!!	GAGTTAGATATAAAAAAGTT+TGG	-	chr4_4:2836340-2836359	Msa0663910:intron	20.0%
!!!	CTTTATAACAAAGAGTTTTT+TGG	-	chr4_4:2836365-2836384	Msa0663910:intron	20.0%
!!!	AGAATTTGTGATTTTAAGAA+TGG	-	chr4_4:2836395-2836414	Msa0663910:intron	20.0%
!!!	ACTAATTTGATTGATGATTT+TGG	-	chr4_4:2836659-2836678	Msa0663910:intron	20.0%
!!	AACTATGCAATGAAAATTAA+AGG	+	chr4_4:2836892-2836911	None:intergenic	20.0%
!!!	GTTGTTTTATTTCAAATCAA+TGG	+	chr4_4:2837048-2837067	None:intergenic	20.0%
!!	ACAATAAAAAAAACTGGATT+TGG	+	chr4_4:2837106-2837125	None:intergenic	20.0%
!!	CCATAAACAATAAAAAAAAC+TGG	+	chr4_4:2837112-2837131	None:intergenic	20.0%
!!!	CCAGTTTTTTTTATTGTTTA+TGG	-	chr4_4:2837109-2837128	Msa0663910:CDS	20.0%
!!	GTTTATCAAGTTATAAATCT+TGG	+	chr4_4:2837152-2837171	None:intergenic	20.0%
!!	TCAAACAAATCATTAAACTA+TGG	+	chr4_4:2837276-2837295	None:intergenic	20.0%
!!!	AATTTATGTGTTGCTTATAT+TGG	-	chr4_4:2837328-2837347	Msa0663910:five_prime_UTR	20.0%
!!!	TTTTACATTTTCTCTCAAAT+TGG	+	chr4_4:2837373-2837392	None:intergenic	20.0%
!!!	AGTTGATTTTGATTTTGATG+TGG	+	chr4_4:2836089-2836108	None:intergenic	25.0%
!!!	GTTTTTAGAATTGGAACAAT+GGG	+	chr4_4:2836119-2836138	None:intergenic	25.0%
!!!	TGTTTTTAGAATTGGAACAA+TGG	+	chr4_4:2836120-2836139	None:intergenic	25.0%
!	TGTGTTCTTATCTTAAAGTT+TGG	-	chr4_4:2836216-2836235	Msa0663910:CDS	25.0%
!!	TGAATTCTCAAAGTCTTATA+AGG	+	chr4_4:2836558-2836577	None:intergenic	25.0%
!!	TGGATTTGTAATCTTGATTT+TGG	-	chr4_4:2836679-2836698	Msa0663910:intron	25.0%
!	CATTATACATGAAGAAAGAA+AGG	+	chr4_4:2836731-2836750	None:intergenic	25.0%
!!	ATATGGATATTGATTGACAT+TGG	-	chr4_4:2836964-2836983	Msa0663910:intron	25.0%
!	ATTGGAGATATAAGATCAAT+GGG	-	chr4_4:2836982-2837001	Msa0663910:intron	25.0%
!	ATCATTGTCTTCATTATATG+TGG	+	chr4_4:2837412-2837431	None:intergenic	25.0%
!	AGATATGACATACATTAACT+TGG	+	chr4_4:2837660-2837679	None:intergenic	25.0%
!	CTTGTTTATAAGATTCCATT+TGG	+	chr4_4:2837784-2837803	None:intergenic	25.0%
!	AATGGAATCTTATAAACAAG+AGG	-	chr4_4:2837784-2837803	Msa0663910:five_prime_UTR	25.0%
!!!	AGTTGATTTTGATTTTGATG+TGG	+	chr4_4:2836089-2836108	None:intergenic	25.0%
!!!	GTTTTTAGAATTGGAACAAT+GGG	+	chr4_4:2836119-2836138	None:intergenic	25.0%
!!!	TGTTTTTAGAATTGGAACAA+TGG	+	chr4_4:2836120-2836139	None:intergenic	25.0%
!	TGTGTTCTTATCTTAAAGTT+TGG	-	chr4_4:2836216-2836235	Msa0663910:CDS	25.0%
!!	TGAATTCTCAAAGTCTTATA+AGG	+	chr4_4:2836558-2836577	None:intergenic	25.0%
!!	TGGATTTGTAATCTTGATTT+TGG	-	chr4_4:2836679-2836698	Msa0663910:intron	25.0%
!	CATTATACATGAAGAAAGAA+AGG	+	chr4_4:2836731-2836750	None:intergenic	25.0%
!!	ATATGGATATTGATTGACAT+TGG	-	chr4_4:2836964-2836983	Msa0663910:intron	25.0%
!	ATTGGAGATATAAGATCAAT+GGG	-	chr4_4:2836982-2837001	Msa0663910:intron	25.0%
!	ATCATTGTCTTCATTATATG+TGG	+	chr4_4:2837412-2837431	None:intergenic	25.0%
!	AGATATGACATACATTAACT+TGG	+	chr4_4:2837660-2837679	None:intergenic	25.0%
!	CTTGTTTATAAGATTCCATT+TGG	+	chr4_4:2837784-2837803	None:intergenic	25.0%
!	AATGGAATCTTATAAACAAG+AGG	-	chr4_4:2837784-2837803	Msa0663910:five_prime_UTR	25.0%
	GATTGAAGAGATTGAAGAAA+GGG	+	chr4_4:2835971-2835990	None:intergenic	30.0%
	TGATTGAAGAGATTGAAGAA+AGG	+	chr4_4:2835972-2835991	None:intergenic	30.0%
!!!	ACTTTGAGGTGGTTTTATTA+AGG	+	chr4_4:2836154-2836173	None:intergenic	30.0%
	AATAAAACCACCTCAAAGTT+TGG	-	chr4_4:2836155-2836174	Msa0663910:CDS	30.0%
	TTACAAAGAACCAAACTTTG+AGG	+	chr4_4:2836168-2836187	None:intergenic	30.0%
	TTTGTAACCAAACCTATTCT+GGG	-	chr4_4:2836181-2836200	Msa0663910:CDS	30.0%
!!	CTTTAAGACAAAACTCTTCT+GGG	-	chr4_4:2836241-2836260	Msa0663910:CDS	30.0%
	ATCTAAATCTTCTTCTGTGA+TGG	-	chr4_4:2836530-2836549	Msa0663910:intron	30.0%
	TTCTGAATCTGATGTTAGAA+AGG	-	chr4_4:2836587-2836606	Msa0663910:intron	30.0%
!	GGATAGCTTAGAGAAATTTT+AGG	+	chr4_4:2836871-2836890	None:intergenic	30.0%
	CATTGGAGATATAAGATCAA+TGG	-	chr4_4:2836981-2837000	Msa0663910:intron	30.0%
	TGTGACACAATTATTGATCT+TGG	+	chr4_4:2837070-2837089	None:intergenic	30.0%
	TAATATGAGAAGAGTAGTCA+CGG	+	chr4_4:2837509-2837528	None:intergenic	30.0%
	TCTCAACTTCAATTATGTTG+AGG	+	chr4_4:2837683-2837702	None:intergenic	30.0%
	TCAACATAATTGAAGTTGAG+AGG	-	chr4_4:2837682-2837701	Msa0663910:five_prime_UTR	30.0%
	ATTGAAGTTGAGAGGATATT+TGG	-	chr4_4:2837690-2837709	Msa0663910:five_prime_UTR	30.0%
!	CTGTTTCTTCTTTATCCAAA+TGG	-	chr4_4:2837766-2837785	Msa0663910:five_prime_UTR	30.0%
	GATTGAAGAGATTGAAGAAA+GGG	+	chr4_4:2835971-2835990	None:intergenic	30.0%
	TGATTGAAGAGATTGAAGAA+AGG	+	chr4_4:2835972-2835991	None:intergenic	30.0%
!!!	ACTTTGAGGTGGTTTTATTA+AGG	+	chr4_4:2836154-2836173	None:intergenic	30.0%
	AATAAAACCACCTCAAAGTT+TGG	-	chr4_4:2836155-2836174	Msa0663910:CDS	30.0%
	TTACAAAGAACCAAACTTTG+AGG	+	chr4_4:2836168-2836187	None:intergenic	30.0%
	TTTGTAACCAAACCTATTCT+GGG	-	chr4_4:2836181-2836200	Msa0663910:CDS	30.0%
!!	CTTTAAGACAAAACTCTTCT+GGG	-	chr4_4:2836241-2836260	Msa0663910:CDS	30.0%
	ATCTAAATCTTCTTCTGTGA+TGG	-	chr4_4:2836530-2836549	Msa0663910:intron	30.0%
	TTCTGAATCTGATGTTAGAA+AGG	-	chr4_4:2836587-2836606	Msa0663910:intron	30.0%
!	GGATAGCTTAGAGAAATTTT+AGG	+	chr4_4:2836871-2836890	None:intergenic	30.0%
	CATTGGAGATATAAGATCAA+TGG	-	chr4_4:2836981-2837000	Msa0663910:intron	30.0%
	TGTGACACAATTATTGATCT+TGG	+	chr4_4:2837070-2837089	None:intergenic	30.0%
	TAATATGAGAAGAGTAGTCA+CGG	+	chr4_4:2837509-2837528	None:intergenic	30.0%
	TCTCAACTTCAATTATGTTG+AGG	+	chr4_4:2837683-2837702	None:intergenic	30.0%
	TCAACATAATTGAAGTTGAG+AGG	-	chr4_4:2837682-2837701	Msa0663910:five_prime_UTR	30.0%
	ATTGAAGTTGAGAGGATATT+TGG	-	chr4_4:2837690-2837709	Msa0663910:five_prime_UTR	30.0%
!	CTGTTTCTTCTTTATCCAAA+TGG	-	chr4_4:2837766-2837785	Msa0663910:five_prime_UTR	30.0%
	GGTTGAAGAACAAAATAGAG+TGG	+	chr4_4:2836017-2836036	None:intergenic	35.0%
	CTTTGTAACCAAACCTATTC+TGG	-	chr4_4:2836180-2836199	Msa0663910:CDS	35.0%
	AATTCACAATGACCCAGAAT+AGG	+	chr4_4:2836196-2836215	None:intergenic	35.0%
!!	CCAGAAGAGTTTTGTCTTAA+AGG	+	chr4_4:2836243-2836262	None:intergenic	35.0%
!!	CCTTTAAGACAAAACTCTTC+TGG	-	chr4_4:2836240-2836259	Msa0663910:CDS	35.0%
!!	GTAATGGATCTTGTGTTTCA+TGG	-	chr4_4:2836448-2836467	Msa0663910:intron	35.0%
!!	TGTTTCATGGATTGGAAGAA+AGG	-	chr4_4:2836461-2836480	Msa0663910:intron	35.0%
!	AAGACTTTGAGAATTCAACC+TGG	-	chr4_4:2836561-2836580	Msa0663910:intron	35.0%
!!	TTTTAGACAACTTGCTTTGC+AGG	-	chr4_4:2836611-2836630	Msa0663910:intron	35.0%
	GCAGTTTCACTTAATCAATG+AGG	-	chr4_4:2836828-2836847	Msa0663910:CDS	35.0%
	CTTCTCATCTATGGTTTCAT+TGG	+	chr4_4:2837218-2837237	None:intergenic	35.0%
!!	CTTTTGTTGCTTCTCATCTA+TGG	+	chr4_4:2837227-2837246	None:intergenic	35.0%
	GACAATGATGAGTCATTTAG+AGG	-	chr4_4:2837423-2837442	Msa0663910:five_prime_UTR	35.0%
	AGGAATGAATGATCCAGATT+GGG	-	chr4_4:2837443-2837462	Msa0663910:five_prime_UTR	35.0%
	GGTTGAAGAACAAAATAGAG+TGG	+	chr4_4:2836017-2836036	None:intergenic	35.0%
	CTTTGTAACCAAACCTATTC+TGG	-	chr4_4:2836180-2836199	Msa0663910:CDS	35.0%
	AATTCACAATGACCCAGAAT+AGG	+	chr4_4:2836196-2836215	None:intergenic	35.0%
!!	CCAGAAGAGTTTTGTCTTAA+AGG	+	chr4_4:2836243-2836262	None:intergenic	35.0%
!!	CCTTTAAGACAAAACTCTTC+TGG	-	chr4_4:2836240-2836259	Msa0663910:CDS	35.0%
!!	GTAATGGATCTTGTGTTTCA+TGG	-	chr4_4:2836448-2836467	Msa0663910:intron	35.0%
!!	TGTTTCATGGATTGGAAGAA+AGG	-	chr4_4:2836461-2836480	Msa0663910:intron	35.0%
!	AAGACTTTGAGAATTCAACC+TGG	-	chr4_4:2836561-2836580	Msa0663910:intron	35.0%
!!	TTTTAGACAACTTGCTTTGC+AGG	-	chr4_4:2836611-2836630	Msa0663910:intron	35.0%
	GCAGTTTCACTTAATCAATG+AGG	-	chr4_4:2836828-2836847	Msa0663910:CDS	35.0%
	CTTCTCATCTATGGTTTCAT+TGG	+	chr4_4:2837218-2837237	None:intergenic	35.0%
!!	CTTTTGTTGCTTCTCATCTA+TGG	+	chr4_4:2837227-2837246	None:intergenic	35.0%
	GACAATGATGAGTCATTTAG+AGG	-	chr4_4:2837423-2837442	Msa0663910:five_prime_UTR	35.0%
	AGGAATGAATGATCCAGATT+GGG	-	chr4_4:2837443-2837462	Msa0663910:five_prime_UTR	35.0%
	GTCACGTTTGCATCAATCAA+TGG	-	chr4_4:2835871-2835890	Msa0663910:three_prime_UTR	40.0%
	TAGAATTGGAACAATGGGCA+CGG	+	chr4_4:2836114-2836133	None:intergenic	40.0%
!	CAAAGAACCAAACTTTGAGG+TGG	+	chr4_4:2836165-2836184	None:intergenic	40.0%
	ACAATGACCCAGAATAGGTT+TGG	+	chr4_4:2836191-2836210	None:intergenic	40.0%
!!	ACTACTGCTGTTGGTGTTAT+TGG	-	chr4_4:2836423-2836442	Msa0663910:intron	40.0%
!!	GTTGGTGTTATTGGTGGTAA+TGG	-	chr4_4:2836432-2836451	Msa0663910:intron	40.0%
	GGATCTTGTGTTTCATGGAT+TGG	-	chr4_4:2836453-2836472	Msa0663910:intron	40.0%
	TGTGCAAAGGAAGAGATTGT+GGG	-	chr4_4:2836803-2836822	Msa0663910:intron	40.0%
	GAGGAATGAATGATCCAGAT+TGG	-	chr4_4:2837442-2837461	Msa0663910:five_prime_UTR	40.0%
	GGAATGAATGATCCAGATTG+GGG	-	chr4_4:2837444-2837463	Msa0663910:five_prime_UTR	40.0%
	AGCACCAACCAAATTTGGAT+GGG	+	chr4_4:2837622-2837641	None:intergenic	40.0%
!!	CAAAGAGCACCAACCAAATT+TGG	+	chr4_4:2837627-2837646	None:intergenic	40.0%
	GTCACGTTTGCATCAATCAA+TGG	-	chr4_4:2835871-2835890	Msa0663910:three_prime_UTR	40.0%
	TAGAATTGGAACAATGGGCA+CGG	+	chr4_4:2836114-2836133	None:intergenic	40.0%
!	CAAAGAACCAAACTTTGAGG+TGG	+	chr4_4:2836165-2836184	None:intergenic	40.0%
	ACAATGACCCAGAATAGGTT+TGG	+	chr4_4:2836191-2836210	None:intergenic	40.0%
!!	ACTACTGCTGTTGGTGTTAT+TGG	-	chr4_4:2836423-2836442	Msa0663910:intron	40.0%
!!	GTTGGTGTTATTGGTGGTAA+TGG	-	chr4_4:2836432-2836451	Msa0663910:intron	40.0%
	GGATCTTGTGTTTCATGGAT+TGG	-	chr4_4:2836453-2836472	Msa0663910:intron	40.0%
	TGTGCAAAGGAAGAGATTGT+GGG	-	chr4_4:2836803-2836822	Msa0663910:intron	40.0%
	GAGGAATGAATGATCCAGAT+TGG	-	chr4_4:2837442-2837461	Msa0663910:five_prime_UTR	40.0%
	GGAATGAATGATCCAGATTG+GGG	-	chr4_4:2837444-2837463	Msa0663910:five_prime_UTR	40.0%
	AGCACCAACCAAATTTGGAT+GGG	+	chr4_4:2837622-2837641	None:intergenic	40.0%
!!	CAAAGAGCACCAACCAAATT+TGG	+	chr4_4:2837627-2837646	None:intergenic	40.0%
	TGATTGATGCAAACGTGACG+TGG	+	chr4_4:2835870-2835889	None:intergenic	45.0%
!!	ACTGCTGTTGGTGTTATTGG+TGG	-	chr4_4:2836426-2836445	Msa0663910:intron	45.0%
!!	ACATCAGATTCAGAAGCACC+AGG	+	chr4_4:2836582-2836601	None:intergenic	45.0%
	TACCATCCAGATGTGTGCAA+AGG	-	chr4_4:2836790-2836809	Msa0663910:intron	45.0%
	TTCCTTTGCACACATCTGGA+TGG	+	chr4_4:2836795-2836814	None:intergenic	45.0%
	TCTCTTCCTTTGCACACATC+TGG	+	chr4_4:2836799-2836818	None:intergenic	45.0%
	GTGTGCAAAGGAAGAGATTG+TGG	-	chr4_4:2836802-2836821	Msa0663910:intron	45.0%
	GTGCAAAGGAAGAGATTGTG+GGG	-	chr4_4:2836804-2836823	Msa0663910:intron	45.0%
	ATGATCCAGATTGGGGCTAT+TGG	-	chr4_4:2837451-2837470	Msa0663910:five_prime_UTR	45.0%
	TGATCCAGATTGGGGCTATT+GGG	-	chr4_4:2837452-2837471	Msa0663910:five_prime_UTR	45.0%
	ATTGGGGCTATTGGGAAGAA+TGG	-	chr4_4:2837460-2837479	Msa0663910:five_prime_UTR	45.0%
	GGCTATTGGGAAGAATGGAT+GGG	-	chr4_4:2837465-2837484	Msa0663910:five_prime_UTR	45.0%
	ATTGGGAAGAATGGATGGGT+TGG	-	chr4_4:2837469-2837488	Msa0663910:five_prime_UTR	45.0%
!	TTGGGAAGAATGGATGGGTT+GGG	-	chr4_4:2837470-2837489	Msa0663910:five_prime_UTR	45.0%
	AGTTGTCCCCCATCCAAATT+TGG	-	chr4_4:2837611-2837630	Msa0663910:five_prime_UTR	45.0%
	CACCAACCAAATTTGGATGG+GGG	+	chr4_4:2837620-2837639	None:intergenic	45.0%
	GCACCAACCAAATTTGGATG+GGG	+	chr4_4:2837621-2837640	None:intergenic	45.0%
	GAGCACCAACCAAATTTGGA+TGG	+	chr4_4:2837623-2837642	None:intergenic	45.0%
	TGATTGATGCAAACGTGACG+TGG	+	chr4_4:2835870-2835889	None:intergenic	45.0%
!!	ACTGCTGTTGGTGTTATTGG+TGG	-	chr4_4:2836426-2836445	Msa0663910:intron	45.0%
!!	ACATCAGATTCAGAAGCACC+AGG	+	chr4_4:2836582-2836601	None:intergenic	45.0%
	TACCATCCAGATGTGTGCAA+AGG	-	chr4_4:2836790-2836809	Msa0663910:intron	45.0%
	TTCCTTTGCACACATCTGGA+TGG	+	chr4_4:2836795-2836814	None:intergenic	45.0%
	TCTCTTCCTTTGCACACATC+TGG	+	chr4_4:2836799-2836818	None:intergenic	45.0%
	GTGTGCAAAGGAAGAGATTG+TGG	-	chr4_4:2836802-2836821	Msa0663910:intron	45.0%
	GTGCAAAGGAAGAGATTGTG+GGG	-	chr4_4:2836804-2836823	Msa0663910:intron	45.0%
	ATGATCCAGATTGGGGCTAT+TGG	-	chr4_4:2837451-2837470	Msa0663910:five_prime_UTR	45.0%
	TGATCCAGATTGGGGCTATT+GGG	-	chr4_4:2837452-2837471	Msa0663910:five_prime_UTR	45.0%
	ATTGGGGCTATTGGGAAGAA+TGG	-	chr4_4:2837460-2837479	Msa0663910:five_prime_UTR	45.0%
	GGCTATTGGGAAGAATGGAT+GGG	-	chr4_4:2837465-2837484	Msa0663910:five_prime_UTR	45.0%
	ATTGGGAAGAATGGATGGGT+TGG	-	chr4_4:2837469-2837488	Msa0663910:five_prime_UTR	45.0%
!	TTGGGAAGAATGGATGGGTT+GGG	-	chr4_4:2837470-2837489	Msa0663910:five_prime_UTR	45.0%
	AGTTGTCCCCCATCCAAATT+TGG	-	chr4_4:2837611-2837630	Msa0663910:five_prime_UTR	45.0%
	CACCAACCAAATTTGGATGG+GGG	+	chr4_4:2837620-2837639	None:intergenic	45.0%
	GCACCAACCAAATTTGGATG+GGG	+	chr4_4:2837621-2837640	None:intergenic	45.0%
	GAGCACCAACCAAATTTGGA+TGG	+	chr4_4:2837623-2837642	None:intergenic	45.0%
!!!	TTTTGATTTTTTTTAAAAAT+AGG	+	chr4_4:2836038-2836057	None:intergenic	5.0%
!!!	TTTTGATTTTTTTTAAAAAT+AGG	+	chr4_4:2836038-2836057	None:intergenic	5.0%
	ATGGCTGCTACTACTGCTGT+TGG	-	chr4_4:2836414-2836433	Msa0663910:intron	50.0%
	TCTTCCCAATAGCCCCAATC+TGG	+	chr4_4:2837459-2837478	None:intergenic	50.0%
	GGGCTATTGGGAAGAATGGA+TGG	-	chr4_4:2837464-2837483	Msa0663910:five_prime_UTR	50.0%
!!	GAAGAATGGATGGGTTGGGA+AGG	-	chr4_4:2837474-2837493	Msa0663910:five_prime_UTR	50.0%
	TTGGATGGGGGACAACTAGT+AGG	+	chr4_4:2837608-2837627	None:intergenic	50.0%
	GTCCCCCATCCAAATTTGGT+TGG	-	chr4_4:2837615-2837634	Msa0663910:five_prime_UTR	50.0%
	GCAAACGTGACGTGGAATCT+CGG	+	chr4_4:2835862-2835881	None:intergenic	50.0%
	ATGGCTGCTACTACTGCTGT+TGG	-	chr4_4:2836414-2836433	Msa0663910:intron	50.0%
	TCTTCCCAATAGCCCCAATC+TGG	+	chr4_4:2837459-2837478	None:intergenic	50.0%
	GGGCTATTGGGAAGAATGGA+TGG	-	chr4_4:2837464-2837483	Msa0663910:five_prime_UTR	50.0%
!!	GAAGAATGGATGGGTTGGGA+AGG	-	chr4_4:2837474-2837493	Msa0663910:five_prime_UTR	50.0%
	TTGGATGGGGGACAACTAGT+AGG	+	chr4_4:2837608-2837627	None:intergenic	50.0%
	GTCCCCCATCCAAATTTGGT+TGG	-	chr4_4:2837615-2837634	Msa0663910:five_prime_UTR	50.0%
!!	TGGATGGGTTGGGAAGGAGC+AGG	-	chr4_4:2837480-2837499	Msa0663910:five_prime_UTR	60.0%
!!	TGGATGGGTTGGGAAGGAGC+AGG	-	chr4_4:2837480-2837499	Msa0663910:five_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	2835860	2837807	2835860	ID=Msa0663910;Name=Msa0663910
chr4_4	mRNA	2835860	2837807	2835860	ID=Msa0663910-mRNA-1;Parent=Msa0663910;Name=Msa0663910-mRNA-1;_AED=0.14;_eAED=0.14;_QI=554\|1\|1\|1\|1\|1\|3\|265\|156
chr4_4	exon	2835860	2836307	2835860	ID=Msa0663910-mRNA-1:exon:824;Parent=Msa0663910-mRNA-1
chr4_4	exon	2836809	2836877	2836809	ID=Msa0663910-mRNA-1:exon:823;Parent=Msa0663910-mRNA-1
chr4_4	exon	2837035	2837807	2837035	ID=Msa0663910-mRNA-1:exon:822;Parent=Msa0663910-mRNA-1
chr4_4	five_prime_UTR	2837254	2837807	2837254	ID=Msa0663910-mRNA-1:five_prime_utr;Parent=Msa0663910-mRNA-1
chr4_4	CDS	2837035	2837253	2837035	ID=Msa0663910-mRNA-1:cds;Parent=Msa0663910-mRNA-1
chr4_4	CDS	2836809	2836877	2836809	ID=Msa0663910-mRNA-1:cds;Parent=Msa0663910-mRNA-1
chr4_4	CDS	2836125	2836307	2836125	ID=Msa0663910-mRNA-1:cds;Parent=Msa0663910-mRNA-1
chr4_4	three_prime_UTR	2835860	2836124	2835860	ID=Msa0663910-mRNA-1:three_prime_utr;Parent=Msa0663910-mRNA-1

Gene Sequence

>Msa0663910

ATGGCTGCTACTACTGCTGTTGGTGTTATTGGTGGTAATGGATCTTGTGTTTCATGGATTGGAAGAAAGGAAAAGAAACAAAATAAGATGAATAAAGTTAGGGTTTGTTGCTCTAAATCTAAATCTTCTTCTGTGATGGATCCTTATAAGACTTTGAGAATTCAACCTGGTGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAACTTGCTTTGCAGTACCATCCAGATGTGTGCAAAGGAAGAGATTGTGGGGTGCAGTTTCACTTAATCAATGAGGCTTATGATATTGTGATGTCCAATTTGAGAGAAAATGTAAAAGAAACTTATGAGACGACCACATATAATGAAGACAATGATGAGTCATTTAGAGGAATGAATGATCCAGATTGGGGCTATTGGGAAGAATGGATGGGTTGGGAAGGAGCAGGAATCCGTGACTACTCTTCTCATATTAATCCTTACATTTAA

Protein sequence

>Msa0663910

MAATTAVGVIGGNGSCVSWIGRKEKKQNKMNKVRVCCSKSKSSSVMDPYKTLRIQPGASESDVRKAFRQLALQYHPDVCKGRDCGVQFHLINEAYDIVMSNLRENVKETYETTTYNEDNDESFRGMNDPDWGYWEEWMGWEGAGIRDYSSHINPYI*