AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1217420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217420 MtrunA17_Chr4g0066911 99.579 475 2 0 1 475 1 475 0.0 985
Msa1217420 MtrunA17_Chr1g0187531 25.982 331 228 8 150 472 177 498 1.67e-22 100
Msa1217420 MtrunA17_Chr1g0190151 25.982 331 227 9 150 472 176 496 1.45e-20 94.7
Msa1217420 MtrunA17_Chr7g0274671 26.446 242 167 5 234 472 265 498 4.99e-19 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217420 AT5G18580.1 89.462 465 48 1 3 467 6 469 0.0 867
Msa1217420 AT5G28850.2 25.602 332 228 9 150 472 173 494 1.38e-21 98.2
Msa1217420 AT5G28900.1 25.301 332 229 9 150 472 173 494 2.66e-21 97.4
Msa1217420 AT1G03960.7 27.132 258 176 5 218 472 39 287 1.01e-20 93.6
Msa1217420 AT5G44090.1 28.077 260 171 7 218 472 249 497 1.45e-20 95.1
Msa1217420 AT5G28850.1 26.829 246 169 5 230 472 45 282 1.70e-20 92.8
Msa1217420 AT1G03960.4 25.071 351 243 9 132 472 8 348 1.71e-20 93.6
Msa1217420 AT1G03960.2 25.071 351 243 9 132 472 8 348 1.71e-20 93.6
Msa1217420 AT1G03960.3 25.071 351 243 9 132 472 8 348 1.71e-20 93.6
Msa1217420 AT5G44090.2 29.457 258 170 7 218 472 284 532 2.26e-20 94.7
Msa1217420 AT1G03960.6 25.071 351 243 9 132 472 86 426 2.45e-20 94.0
Msa1217420 AT1G54450.1 24.847 326 232 6 150 470 173 490 2.58e-20 94.4
Msa1217420 AT1G03960.1 25.071 351 243 9 132 472 148 488 2.92e-20 94.0
Msa1217420 AT1G03960.5 24.490 343 241 8 132 466 148 480 5.43e-19 90.1

Find 143 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATAGATGTGCGGGGTTTC+TGG 0.015632 8_1:-79675217 Msa1217420:CDS
GTTGAAATGTATTAAATTTA+AGG 0.146417 8_1:+79675103 None:intergenic
TGCCACCATCAATCCATTTA+TGG 0.164869 8_1:+79675366 None:intergenic
AACAAATATGTCAAGCCTTC+TGG 0.172392 8_1:+79675830 None:intergenic
ACAGAGACGTACACCATAAA+TGG 0.257192 8_1:-79675379 Msa1217420:intron
AGAATATAAGCTAATAATAT+TGG 0.268539 8_1:-79674918 Msa1217420:three_prime_UTR
ACATGCCTTCTTGTAGAAAC+TGG 0.282567 8_1:+79681902 None:intergenic
CGCGGGTTTCGATTAGAGTT+AGG 0.286178 8_1:-79682264 Msa1217420:five_prime_UTR
TGACTGATTGATCCCTCTTC+AGG 0.291840 8_1:+79681367 None:intergenic
TACAGTACCACCTTGTTTGC+AGG 0.300753 8_1:+79675250 None:intergenic
CATAGATGTGCGGGGTTTCT+GGG 0.302117 8_1:-79675216 Msa1217420:CDS
TTACAACATTTGAGAATTCT+AGG 0.308577 8_1:+79675081 None:intergenic
AAGATGTACGGGATGAAATC+TGG 0.319681 8_1:-79675325 Msa1217420:CDS
CTAAAGAATCGTCGGCATTT+AGG 0.331185 8_1:+79679037 None:intergenic
TCTCGGATCCGAAGCTTTGA+TGG 0.336437 8_1:-79682099 Msa1217420:CDS
GAGTTTCTTGGACTTTAATC+TGG 0.338671 8_1:-79675873 Msa1217420:CDS
CGCATCACGTAAAGGTAAAA+TGG 0.341167 8_1:+79678959 None:intergenic
TCAAACTTCATAAAGTTAGA+AGG 0.342405 8_1:+79679013 None:intergenic
CTTGGCACAATTACGTACTA+TGG 0.343771 8_1:-79677936 Msa1217420:CDS
ACAAATATGTCAAGCCTTCT+GGG 0.348319 8_1:+79675831 None:intergenic
TTTGTTGAATGCCGATGATT+TGG 0.354002 8_1:-79681207 Msa1217420:CDS
ATCGGATCCGGTGCCGGTCT+CGG 0.355652 8_1:-79682116 Msa1217420:CDS
ATAATCTGATTAGGACAAAT+AGG 0.356488 8_1:-79682428 None:intergenic
TCAATCACATTACAAACATT+TGG 0.360452 8_1:+79674940 None:intergenic
ACGGGATGAAATCTGGGATA+TGG 0.389280 8_1:-79675318 Msa1217420:CDS
GCTGCTGAGTAATTGTCTTC+AGG 0.399176 8_1:-79676943 Msa1217420:CDS
TTTCGTTGCCTTGATCTTCA+AGG 0.399828 8_1:-79675809 Msa1217420:CDS
AACGATACTTGGCCAATCTC+TGG 0.409291 8_1:+79681338 None:intergenic
GAAGTTTGAGAAGGATGAGC+AGG 0.413563 8_1:-79678999 Msa1217420:CDS
CCCTGCATCCTCCATGCTGT+GGG 0.419674 8_1:-79682159 Msa1217420:CDS
AACTTTGTATTGAAGATGTA+CGG 0.423478 8_1:-79675337 Msa1217420:CDS
GATCACATTGGCTGATCTAC+TGG 0.423557 8_1:-79675273 Msa1217420:CDS
TAATTGTCTTCAGGAACTAA+TGG 0.427270 8_1:-79676934 Msa1217420:CDS
ACCCACAGCATGGAGGATGC+AGG 0.431811 8_1:+79682158 None:intergenic
CTGGGTTTGAGGAGCGTCAT+GGG 0.441576 8_1:+79682193 None:intergenic
TGCCTTGATCTTCAAGGGAG+GGG 0.443199 8_1:-79675803 Msa1217420:CDS
TAATATTGGTTTGTTGTCGA+TGG 0.445687 8_1:-79674904 Msa1217420:three_prime_UTR
CGCAATCTCCGTCGTTTCAT+CGG 0.447105 8_1:-79682134 Msa1217420:CDS
GCGGGTTTCGATTAGAGTTA+GGG 0.450924 8_1:-79682263 Msa1217420:five_prime_UTR
CAGTCAGAGAGTCCAGAGAT+TGG 0.451193 8_1:-79681350 Msa1217420:CDS
ACACAGAACAGGCTGAAAAC+TGG 0.454575 8_1:-79676582 Msa1217420:CDS
CCCCTGCATCCTCCATGCTG+TGG 0.459542 8_1:-79682160 Msa1217420:CDS
GAGCAGATCTATTCTTCCTC+TGG 0.459652 8_1:+79675152 None:intergenic
GAGGAAGAATAGATCTGCTC+CGG 0.459739 8_1:-79675149 Msa1217420:exon
AAGTTTGAGAAGGATGAGCA+GGG 0.462952 8_1:-79678998 Msa1217420:CDS
AGAAGTCACAGACACAGAAC+AGG 0.463244 8_1:-79676593 Msa1217420:CDS
GGAACTAATGGAGCTTCATC+AGG 0.467348 8_1:-79676922 Msa1217420:intron
CGTTTCATCGGATCCGGTGC+CGG 0.473905 8_1:-79682122 Msa1217420:CDS
TCTGTATGTACAGAACAAAT+AGG 0.473976 8_1:-79679061 Msa1217420:CDS
CTCCGTCGTTTCATCGGATC+CGG 0.475832 8_1:-79682128 Msa1217420:CDS
TCTGGGTTTGAGGAGCGTCA+TGG 0.475855 8_1:+79682192 None:intergenic
TTCGGATCCGAGACCGGCAC+CGG 0.480160 8_1:+79682109 None:intergenic
TAGCATGCTCATAGATGTGC+GGG 0.483960 8_1:-79675225 Msa1217420:CDS
TTGCCTTGATCTTCAAGGGA+GGG 0.497256 8_1:-79675804 Msa1217420:CDS
AGTACGTAATTGTGCCAAGT+TGG 0.498410 8_1:+79677940 None:intergenic
GTACACCATAAATGGATTGA+TGG 0.499781 8_1:-79675371 Msa1217420:CDS
TGATGCTACTGGTGCAGAAA+AGG 0.502959 8_1:-79681144 Msa1217420:intron
GACAAATAGGTGTAGGAGGT+TGG 0.504888 8_1:-79682415 Msa1217420:five_prime_UTR
AAGAAAGAAAGAAAGAACAG+TGG 0.506675 8_1:-79682362 Msa1217420:five_prime_UTR
TTCGTTGCCTTGATCTTCAA+GGG 0.506827 8_1:-79675808 Msa1217420:CDS
AGTGAATATCTGCTGTAGTA+AGG 0.507664 8_1:+79675777 None:intergenic
CCCACAGCATGGAGGATGCA+GGG 0.507937 8_1:+79682159 None:intergenic
GTTATTGTATATCTAGCCAT+TGG 0.508151 8_1:-79674995 Msa1217420:three_prime_UTR
CAGAAGAAAAGCGCTGAAGC+TGG 0.509459 8_1:-79681933 Msa1217420:CDS
GATCTACTGGCCTGCAAACA+AGG 0.510356 8_1:-79675260 Msa1217420:CDS
CTCGGATCCGAAGCTTTGAT+GGG 0.511430 8_1:-79682098 Msa1217420:intron
GTACGTAATTGTGCCAAGTT+GGG 0.518298 8_1:+79677941 None:intergenic
CAAAGCTTCGGATCCGAGAC+CGG 0.518896 8_1:+79682103 None:intergenic
TAACTTTATGAAGTTTGAGA+AGG 0.521882 8_1:-79679008 Msa1217420:CDS
AATTCCCAGTTTCTACAAGA+AGG 0.521965 8_1:-79681907 Msa1217420:intron
TCATCCAAACCTCGTCTATG+AGG 0.526337 8_1:+79677851 None:intergenic
TGGTGGAAAGACAAGGGAGA+TGG 0.526463 8_1:-79675903 Msa1217420:CDS
ACCCGCGAGAGATATATGAT+TGG 0.528013 8_1:+79682280 None:intergenic
AGAGTTGTGGTGGAAAGACA+AGG 0.529670 8_1:-79675910 Msa1217420:CDS
CGTTGGCTCCGATAAGCAAC+CGG 0.536263 8_1:+79682314 None:intergenic
CATGCCTTCTTGTAGAAACT+GGG 0.536301 8_1:+79681903 None:intergenic
GTAAAGGTAAAATGGTAGAA+TGG 0.536646 8_1:+79678967 None:intergenic
CAACAGAGAAAATCTTCTAC+AGG 0.537600 8_1:-79675186 Msa1217420:CDS
ATACGAACCCATCAAAGCTT+CGG 0.541549 8_1:+79682091 None:intergenic
CTACCGTGCGCATCACGTAA+AGG 0.541937 8_1:+79678951 None:intergenic
AACCCCTCCCTTGAAGATCA+AGG 0.541976 8_1:+79675801 None:intergenic
GTGATCTTGAGGTCATCTGC+TGG 0.549058 8_1:+79675290 None:intergenic
TGATTAGGACAAATAGGTGT+AGG 0.549565 8_1:-79682422 Msa1217420:five_prime_UTR
AGCTTTCTGTTAGCATGACC+CGG 0.552985 8_1:+79675130 None:intergenic
AGATGTACGGGATGAAATCT+GGG 0.554056 8_1:-79675324 Msa1217420:CDS
ACTTCTGCCCGACGTGTATG+TGG 0.559250 8_1:-79676550 Msa1217420:intron
CAATTACGTACTATGGATGC+AGG 0.560142 8_1:-79677929 Msa1217420:CDS
CCACAGCATGGAGGATGCAG+GGG 0.560303 8_1:+79682160 None:intergenic
ATACCCACCACATACACGTC+GGG 0.570402 8_1:+79676543 None:intergenic
TTGTATATCTAGCCATTGGT+TGG 0.574289 8_1:-79674991 Msa1217420:three_prime_UTR
CACAGCATGGAGGATGCAGG+GGG 0.579017 8_1:+79682161 None:intergenic
GAGCTGCGAGAATATGCAGA+TGG 0.579437 8_1:-79676231 Msa1217420:CDS
CGATGATTTGGATGCAATGT+GGG 0.583046 8_1:-79681195 Msa1217420:CDS
ACGAGGTCTTATACCCAACT+TGG 0.584602 8_1:-79677954 Msa1217420:CDS
ATCCAATCATATATCTCTCG+CGG 0.585624 8_1:-79682282 Msa1217420:five_prime_UTR
TAGAAGGACTAAAGAATCGT+CGG 0.586744 8_1:+79679029 None:intergenic
CGCCGCGGAAAGAGTTGTGG+TGG 0.589233 8_1:-79675920 Msa1217420:CDS
CCACATTGCATCCAAATCAT+CGG 0.595437 8_1:+79681196 None:intergenic
TCCAATCATATATCTCTCGC+GGG 0.596990 8_1:-79682281 Msa1217420:five_prime_UTR
CGATGAAACGACGGAGATTG+CGG 0.597769 8_1:+79682135 None:intergenic
CTTCTTCTAGAAACCTGAAG+AGG 0.597788 8_1:-79681380 Msa1217420:intron
GAGCTTGATGAGGATTCTGA+TGG 0.600586 8_1:-79678705 Msa1217420:CDS
GAGATTGCGGACCCACAGCA+TGG 0.604791 8_1:+79682148 None:intergenic
ACTTTGTATTGAAGATGTAC+GGG 0.606242 8_1:-79675336 Msa1217420:CDS
GCTCTTGATAAAGATTCAAG+CGG 0.606728 8_1:-79676270 Msa1217420:CDS
GTTGCCTTGATCTTCAAGGG+AGG 0.607519 8_1:-79675805 Msa1217420:CDS
AGGAAGAATAGATCTGCTCC+GGG 0.608456 8_1:-79675148 Msa1217420:exon
AGCTGCGAGAATATGCAGAT+GGG 0.609717 8_1:-79676230 Msa1217420:CDS
TTCTTCTAGAAACCTGAAGA+GGG 0.610376 8_1:-79681379 Msa1217420:intron
GTAACCCGTGTCATTGTATG+TGG 0.611821 8_1:-79675062 Msa1217420:three_prime_UTR
GATTGGATCTGAGATACCGT+TGG 0.612954 8_1:+79682297 None:intergenic
GAGTTGTGGTGGAAAGACAA+GGG 0.614206 8_1:-79675909 Msa1217420:CDS
GTTCGCCGCGGAAAGAGTTG+TGG 0.614666 8_1:-79675923 Msa1217420:CDS
ACAGGAAGAAGAAGAACCAG+AGG 0.614776 8_1:-79675168 Msa1217420:CDS
GATCAGCCAATGTGATCTTG+AGG 0.615588 8_1:+79675279 None:intergenic
TTAGGACAAATAGGTGTAGG+AGG 0.617452 8_1:-79682419 Msa1217420:five_prime_UTR
GCTAGATATACAATAACCTA+CGG 0.621194 8_1:+79675001 None:intergenic
TTCCACCACAACTCTTTCCG+CGG 0.622417 8_1:+79675918 None:intergenic
CACCATAAATGGATTGATGG+TGG 0.628066 8_1:-79675368 Msa1217420:CDS
CACCGGATCCGATGAAACGA+CGG 0.631083 8_1:+79682126 None:intergenic
TAATTCCACATACAATGACA+CGG 0.637601 8_1:+79675057 None:intergenic
CGGTTGCTTATCGGAGCCAA+CGG 0.638617 8_1:-79682313 Msa1217420:five_prime_UTR
CAAATATGTCAAGCCTTCTG+GGG 0.638698 8_1:+79675832 None:intergenic
GAAAACAAAGACACCCCAGA+AGG 0.642493 8_1:-79675845 Msa1217420:CDS
TGATATGAGTGAGCTTGATG+AGG 0.644452 8_1:-79678715 Msa1217420:CDS
TGTGTGATTGATGATGCTAC+TGG 0.649443 8_1:-79681155 Msa1217420:CDS
TTACCTTTACGTGATGCGCA+CGG 0.650553 8_1:-79678954 Msa1217420:intron
CTAGCATGCTCATAGATGTG+CGG 0.651577 8_1:-79675226 Msa1217420:CDS
GCAGCAATACGACAATACAT+TGG 0.652854 8_1:+79677899 None:intergenic
AATTCCACATACAATGACAC+GGG 0.655214 8_1:+79675058 None:intergenic
AGATGACCTCAAGATCACAT+TGG 0.674350 8_1:-79675285 Msa1217420:CDS
CCGATGATTTGGATGCAATG+TGG 0.676057 8_1:-79681196 Msa1217420:CDS
CAACCGGCGATGTACAGCGA+CGG 0.677187 8_1:-79682221 Msa1217420:exon
TATTTGTTCTGTACATACAG+AGG 0.679593 8_1:+79679063 None:intergenic
CTGTACATACAGAGGCAATG+TGG 0.681429 8_1:+79679071 None:intergenic
ACAGCATGGAGGATGCAGGG+GGG 0.693428 8_1:+79682162 None:intergenic
GATACCCACCACATACACGT+CGG 0.704023 8_1:+79676542 None:intergenic
ATTGCGGACCCACAGCATGG+AGG 0.723040 8_1:+79682151 None:intergenic
CTACTGGCCTGCAAACAAGG+TGG 0.734069 8_1:-79675257 Msa1217420:CDS
TTCGACGAACATGTTCGCCG+CGG 0.749858 8_1:-79675935 Msa1217420:CDS
GAAATGGAAGCGTATATACG+AGG 0.750462 8_1:-79677971 Msa1217420:CDS
ATGACGCTCCTCAAACCCAG+AGG 0.752891 8_1:-79682190 Msa1217420:CDS
AGCATGCTCATAGATGTGCG+GGG 0.760397 8_1:-79675224 Msa1217420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTATTTATTTAATTT+TGG + chr8_1:79681341-79681360 None:intergenic 0.0%
!! ATGCATAATAATAAAATTAA+TGG + chr8_1:79675444-79675463 None:intergenic 10.0%
!! AAAATATATATGATTCTAAA+AGG - chr8_1:79677106-79677125 Msa1217420:intron 10.0%
!! GAAAAAATAAATAAATAACA+TGG + chr8_1:79680821-79680840 None:intergenic 10.0%
!! CAAATTAGTATATTAAATTA+TGG - chr8_1:79681800-79681819 Msa1217420:intron 10.0%
!! TAGCCTATATATTAAAATAT+AGG + chr8_1:79676449-79676468 None:intergenic 15.0%
!! TTAATTGTAATAATAAGTGT+TGG + chr8_1:79676672-79676691 None:intergenic 15.0%
!! ATTTATACCAAAAAAAAAAG+AGG - chr8_1:79677225-79677244 Msa1217420:intron 15.0%
!!! ATTTTAGCCTAATATATATT+TGG - chr8_1:79677490-79677509 Msa1217420:intron 15.0%
!! ATAAAATATTTCCTGTTAAA+TGG - chr8_1:79678008-79678027 Msa1217420:intron 15.0%
!! TAAAATATTTCCTGTTAAAT+GGG - chr8_1:79678009-79678028 Msa1217420:intron 15.0%
!!! TCTTTTATTGAATTGTTAAT+TGG - chr8_1:79678133-79678152 Msa1217420:intron 15.0%
!! TGCAAAATATTCAAAATAAA+TGG + chr8_1:79679682-79679701 None:intergenic 15.0%
!! GTTGAAATGTATTAAATTTA+AGG + chr8_1:79682216-79682235 None:intergenic 15.0%
!! AGAATATAAGCTAATAATAT+TGG - chr8_1:79682398-79682417 Msa1217420:five_prime_UTR 15.0%
!! ATAAAAGGCTAAAACAATAT+TGG + chr8_1:79675502-79675521 None:intergenic 20.0%
!!! GTTTGTTTTTTCATTTGTTA+CGG - chr8_1:79675654-79675673 Msa1217420:intron 20.0%
!! CTAATATATGTTTGAAGATT+AGG - chr8_1:79675848-79675867 Msa1217420:CDS 20.0%
!!! TTTTTGAAGGTATTATTTCT+TGG - chr8_1:79676000-79676019 Msa1217420:intron 20.0%
!!! AGGCCTATATTTTAATATAT+AGG - chr8_1:79676443-79676462 Msa1217420:intron 20.0%
!!! AAAGTGCTATTTTCAAAATA+GGG + chr8_1:79677423-79677442 None:intergenic 20.0%
!!! TAAAGTGCTATTTTCAAAAT+AGG + chr8_1:79677422-79677441 None:intergenic 20.0%
!!! ACGTTTCTTTTTTTTTTTGT+TGG - chr8_1:79676614-79676633 Msa1217420:intron 20.0%
!!! AATTTTAATAATATCCAGCA+TGG + chr8_1:79676640-79676659 None:intergenic 20.0%
!!! TCTTTTATTTTGTCTTAATC+TGG - chr8_1:79676892-79676911 Msa1217420:intron 20.0%
!!! TTTTTTTGCGAAAATTCAAA+AGG - chr8_1:79677181-79677200 Msa1217420:intron 20.0%
!!! ATCTTTTCCTCTTTTTTTTT+TGG + chr8_1:79677235-79677254 None:intergenic 20.0%
!! GGAAAAGATATATTAAATCA+CGG - chr8_1:79677246-79677265 Msa1217420:intron 20.0%
!!! TTTTTTTCAAAAATCCACAT+AGG - chr8_1:79677299-79677318 Msa1217420:intron 20.0%
!!! TAAAGTGCTATTTTCAAAAT+AGG - chr8_1:79677422-79677441 Msa1217420:intron 20.0%
!!! AAAGTGCTATTTTCAAAATA+GGG - chr8_1:79677423-79677442 Msa1217420:intron 20.0%
!! TTCAGTACCAAATATATATT+AGG + chr8_1:79677500-79677519 None:intergenic 20.0%
!!! AGGAAATATTTTATCTTGAT+AGG + chr8_1:79678002-79678021 None:intergenic 20.0%
!! ATAAAATAAAAACATACGTG+TGG + chr8_1:79678647-79678666 None:intergenic 20.0%
!!! TTTATTTTTTTATCTCTGCT+TGG - chr8_1:79678681-79678700 Msa1217420:intron 20.0%
!! ATTGAATTGAACTATTTGTT+AGG - chr8_1:79678720-79678739 Msa1217420:CDS 20.0%
!! TAAACAGAGATTAGATAATA+AGG + chr8_1:79678927-79678946 None:intergenic 20.0%
!! AATAAGATAGTTGAGAATAA+AGG + chr8_1:79678951-79678970 None:intergenic 20.0%
!! GAAAAAAAGATTAGATGATA+AGG + chr8_1:79679075-79679094 None:intergenic 20.0%
!! ATAGTCAGAAATTTATAACA+AGG + chr8_1:79679112-79679131 None:intergenic 20.0%
!! TATGCATGTCAATAAAATAA+AGG + chr8_1:79679139-79679158 None:intergenic 20.0%
!!! TATTTACGAATTTGTTTTTC+AGG - chr8_1:79679323-79679342 Msa1217420:intron 20.0%
!!! AAACATATGTTATTTTCAAC+AGG + chr8_1:79679713-79679732 None:intergenic 20.0%
!!! TTTTTGTTAACTATGTTAAG+AGG - chr8_1:79680073-79680092 Msa1217420:intron 20.0%
!!! AATTATTCTTTTTACGTTAC+AGG - chr8_1:79680329-79680348 Msa1217420:intron 20.0%
!!! TTAGAACAAAATTTTGTTCA+TGG + chr8_1:79680635-79680654 None:intergenic 20.0%
!!! AAACAACAGTTTTTTTCTTT+AGG + chr8_1:79681732-79681751 None:intergenic 20.0%
!!! GTTTTTCAATTTTACTCAAC+CGG - chr8_1:79675079-79675098 Msa1217420:three_prime_UTR 25.0%
!! TCATTTGTTACGGATTATAT+AGG - chr8_1:79675664-79675683 Msa1217420:intron 25.0%
! GGATTATATAGGATAGTTAA+TGG - chr8_1:79675675-79675694 Msa1217420:intron 25.0%
! AAAAACAATATAGAGAGAGA+GGG - chr8_1:79675762-79675781 Msa1217420:intron 25.0%
!! GATATTTGTACAACCATTTT+GGG + chr8_1:79675818-79675837 None:intergenic 25.0%
!! TGATATTTGTACAACCATTT+TGG + chr8_1:79675819-79675838 None:intergenic 25.0%
! ATATGTTTGAAGATTAGGAT+TGG - chr8_1:79675853-79675872 Msa1217420:CDS 25.0%
! TATGTTTGAAGATTAGGATT+GGG - chr8_1:79675854-79675873 Msa1217420:CDS 25.0%
! TATTTGAATTGCAGATAGAT+AGG + chr8_1:79675902-79675921 None:intergenic 25.0%
!!! ATCTTTTTTCCAAAAACCAA+GGG + chr8_1:79676364-79676383 None:intergenic 25.0%
!!! AAGTGCTATTTTCAAAATAG+GGG + chr8_1:79677424-79677443 None:intergenic 25.0%
! AACCAGATTAACACAAAATA+AGG + chr8_1:79676847-79676866 None:intergenic 25.0%
!! TATTTTGTGCTATCTAAATG+TGG - chr8_1:79676937-79676956 Msa1217420:CDS 25.0%
!! ATTCTAAAAGGAAAAGATAG+AGG - chr8_1:79677118-79677137 Msa1217420:intron 25.0%
! AAAAAATTAAAACCCTCAAG+TGG + chr8_1:79677164-79677183 None:intergenic 25.0%
! AATTCAAAAGGAAAAGATAG+AGG - chr8_1:79677193-79677212 Msa1217420:intron 25.0%
!!! AAGTGCTATTTTCAAAATAG+GGG - chr8_1:79677424-79677443 Msa1217420:intron 25.0%
! TCTATTTCACTAGACATATT+TGG - chr8_1:79677856-79677875 Msa1217420:intron 25.0%
! GAACAAATTAGATTATCTCA+GGG + chr8_1:79677936-79677955 None:intergenic 25.0%
! TGAACAAATTAGATTATCTC+AGG + chr8_1:79677937-79677956 None:intergenic 25.0%
! ATACATAACAAACAAAGTTG+TGG + chr8_1:79678109-79678128 None:intergenic 25.0%
! GAAACAAATTAAAGTACGTA+AGG + chr8_1:79678199-79678218 None:intergenic 25.0%
! TCAAACTTCATAAAGTTAGA+AGG + chr8_1:79678306-79678325 None:intergenic 25.0%
! TAACTTTATGAAGTTTGAGA+AGG - chr8_1:79678308-79678327 Msa1217420:intron 25.0%
!!! TCCAACTTGAACTAATTTTT+TGG - chr8_1:79678394-79678413 Msa1217420:intron 25.0%
!! TCGAAGATATCTAATGATTT+TGG - chr8_1:79678547-79678566 Msa1217420:intron 25.0%
! AGATTTCTCAAAAGTTCAAA+GGG + chr8_1:79679201-79679220 None:intergenic 25.0%
! TAGATTTCTCAAAAGTTCAA+AGG + chr8_1:79679202-79679221 None:intergenic 25.0%
! AACATTTCCAGTAATTTCTT+TGG - chr8_1:79679235-79679254 Msa1217420:intron 25.0%
!! TGGTCATATCATCTTTTATT+TGG - chr8_1:79679519-79679538 Msa1217420:intron 25.0%
!!! GTTATTTTCAACAGGTTTTA+TGG + chr8_1:79679705-79679724 None:intergenic 25.0%
! AGAGAGATGAATAAGTAATA+GGG + chr8_1:79679792-79679811 None:intergenic 25.0%
! TAGAGAGATGAATAAGTAAT+AGG + chr8_1:79679793-79679812 None:intergenic 25.0%
! ATTACTTATTCATCTCTCTA+AGG - chr8_1:79679793-79679812 Msa1217420:intron 25.0%
! TTACTTATTCATCTCTCTAA+GGG - chr8_1:79679794-79679813 Msa1217420:intron 25.0%
!! CTTAAGGGTATGAATATTAT+TGG - chr8_1:79679915-79679934 Msa1217420:intron 25.0%
!!! TTGGCTGTATACTTTTTAAA+TGG - chr8_1:79680220-79680239 Msa1217420:intron 25.0%
!! TAGACTTTGATAATACTAGA+TGG + chr8_1:79680306-79680325 None:intergenic 25.0%
! GCATCAAATTAAAGCTTAAA+AGG + chr8_1:79680661-79680680 None:intergenic 25.0%
! AATAAATAACATGGACATTC+AGG + chr8_1:79680812-79680831 None:intergenic 25.0%
! TATTACCATTCTACTATTCT+AGG - chr8_1:79681145-79681164 Msa1217420:CDS 25.0%
! ATTACCATTCTACTATTCTA+GGG - chr8_1:79681146-79681165 Msa1217420:CDS 25.0%
! GAGTACTAAACTATAAATGA+AGG + chr8_1:79681313-79681332 None:intergenic 25.0%
! TATATTAAATTATGGGATCC+TGG - chr8_1:79681808-79681827 Msa1217420:intron 25.0%
! AACTTTGTATTGAAGATGTA+CGG - chr8_1:79681979-79681998 Msa1217420:CDS 25.0%
! TTACAACATTTGAGAATTCT+AGG + chr8_1:79682238-79682257 None:intergenic 25.0%
! TCAATCACATTACAAACATT+TGG + chr8_1:79682379-79682398 None:intergenic 25.0%
AAGAAAGAAAGAAAGAACAG+TGG - chr8_1:79674954-79674973 Msa1217420:three_prime_UTR 30.0%
TATCACAAAACTGAAAGAGA+TGG + chr8_1:79675261-79675280 None:intergenic 30.0%
GGCTAAAACAATATTGGATT+TGG + chr8_1:79675496-79675515 None:intergenic 30.0%
!!! TGTTTTAGCCTTTTATCCAT+TGG - chr8_1:79675506-79675525 Msa1217420:intron 30.0%
TTTATCGTCGAATTTAAACC+TGG - chr8_1:79675545-79675564 Msa1217420:intron 30.0%
TTATCGTCGAATTTAAACCT+GGG - chr8_1:79675546-79675565 Msa1217420:intron 30.0%
! ATACAGCATGTAACTTGTAA+TGG + chr8_1:79675622-79675641 None:intergenic 30.0%
CAAAAACAATATAGAGAGAG+AGG - chr8_1:79675761-79675780 Msa1217420:intron 30.0%
TACCTTCAAAAAACGATACT+TGG + chr8_1:79675992-79676011 None:intergenic 30.0%
AAAAAGAAGAAGCAAACACA+TGG + chr8_1:79676211-79676230 None:intergenic 30.0%
!!! TCTTTTTTCCAAAAACCAAG+GGG + chr8_1:79676363-79676382 None:intergenic 30.0%
!!! CATCTTTTTTCCAAAAACCA+AGG + chr8_1:79676365-79676384 None:intergenic 30.0%
! TATAGGCTAAAATGCACTTT+TGG - chr8_1:79676460-79676479 Msa1217420:intron 30.0%
!!! AGTGCTATTTTCAAAATAGG+GGG + chr8_1:79677425-79677444 None:intergenic 30.0%
! GTGAGAAATCTCACATTTTA+TGG + chr8_1:79676709-79676728 None:intergenic 30.0%
!!! CAATTGGATTTTGGTTTGTA+CGG + chr8_1:79676757-79676776 None:intergenic 30.0%
GTACAAACCAAAATCCAATT+GGG - chr8_1:79676756-79676775 Msa1217420:intron 30.0%
CAAAATCCAATTGGGAATTA+GGG - chr8_1:79676764-79676783 Msa1217420:intron 30.0%
!!! CTCCTTATTTTGTGTTAATC+TGG - chr8_1:79676842-79676861 Msa1217420:intron 30.0%
GTCTTAATCTGGTTGTTAAA+TGG - chr8_1:79676903-79676922 Msa1217420:intron 30.0%
!!! AGTGCTATTTTCAAAATAGG+GGG - chr8_1:79677425-79677444 Msa1217420:intron 30.0%
!! AATCGCAACTTTTGAAAACT+TGG - chr8_1:79677453-79677472 Msa1217420:intron 30.0%
!! ATCGCAACTTTTGAAAACTT+GGG - chr8_1:79677454-79677473 Msa1217420:intron 30.0%
! ATTAGGCTAAAATGCACTTT+TGG + chr8_1:79677483-79677502 None:intergenic 30.0%
GAAGGATTTAATACAGATTG+AGG + chr8_1:79677810-79677829 None:intergenic 30.0%
! CTGATCTTTAAAGGTATAGA+AGG + chr8_1:79677828-79677847 None:intergenic 30.0%
ATTGAGTCTCTGATCTTTAA+AGG + chr8_1:79677837-79677856 None:intergenic 30.0%
TGCTCTATTTATCCTTTAAC+TGG - chr8_1:79677883-79677902 Msa1217420:CDS 30.0%
TTTATCCTTTAACTGGAGTT+TGG - chr8_1:79677890-79677909 Msa1217420:CDS 30.0%
ATTTGTATCACCCATTTAAC+AGG + chr8_1:79678022-79678041 None:intergenic 30.0%
TATTTGTTCTGTACATACAG+AGG + chr8_1:79678256-79678275 None:intergenic 30.0%
TCTGTATGTACAGAACAAAT+AGG - chr8_1:79678255-79678274 Msa1217420:intron 30.0%
GTAAAGGTAAAATGGTAGAA+TGG + chr8_1:79678352-79678371 None:intergenic 30.0%
GCCAAAAAATTAGTTCAAGT+TGG + chr8_1:79678398-79678417 None:intergenic 30.0%
AGAGATTAGATAATAAGGAG+TGG + chr8_1:79678922-79678941 None:intergenic 30.0%
GATGAAATATTGATATGCAG+GGG + chr8_1:79679012-79679031 None:intergenic 30.0%
GGATGAAATATTGATATGCA+GGG + chr8_1:79679013-79679032 None:intergenic 30.0%
CTGCATATCAATATTTCATC+CGG - chr8_1:79679012-79679031 Msa1217420:CDS 30.0%
AAAGATTAGATGATAAGGAG+TGG + chr8_1:79679070-79679089 None:intergenic 30.0%
AAACACACCAAAGAAATTAC+TGG + chr8_1:79679245-79679264 None:intergenic 30.0%
! CTAATCTTTTTCCAAGAAAC+TGG + chr8_1:79679293-79679312 None:intergenic 30.0%
CAGTTTCTTGGAAAAAGATT+AGG - chr8_1:79679291-79679310 Msa1217420:intron 30.0%
!!! CGAATTTGTTTTTCAGGAAA+TGG - chr8_1:79679329-79679348 Msa1217420:intron 30.0%
GATCAACTTTGACAATAAGT+TGG + chr8_1:79679658-79679677 None:intergenic 30.0%
ATAAGTAATAGGGAACAAAC+AGG + chr8_1:79679782-79679801 None:intergenic 30.0%
TATAGTCGAGTAATCATGAA+AGG + chr8_1:79679960-79679979 None:intergenic 30.0%
CAAACAATTTACAACTGATG+AGG - chr8_1:79679990-79680009 Msa1217420:intron 30.0%
TTGTTAACTATGTTAAGAGG+TGG - chr8_1:79680076-79680095 Msa1217420:intron 30.0%
GTGGAGATGAAAAATTATTC+TGG - chr8_1:79680095-79680114 Msa1217420:intron 30.0%
GAGATGAAAAATTATTCTGG+TGG - chr8_1:79680098-79680117 Msa1217420:intron 30.0%
AAAATTATTCTGGTGGTTTG+AGG - chr8_1:79680105-79680124 Msa1217420:intron 30.0%
GAGAATAATGGCTTAGTTAT+AGG - chr8_1:79680189-79680208 Msa1217420:intron 30.0%
TTAGTTATAGGCTTATAGCT+TGG - chr8_1:79680201-79680220 Msa1217420:intron 30.0%
TAATTGTCTTCAGGAACTAA+TGG - chr8_1:79680382-79680401 Msa1217420:intron 30.0%
AGTATTGTAATACGTGTTTC+AGG - chr8_1:79680690-79680709 Msa1217420:intron 30.0%
CTGTGAAGTGTGAATTATTA+TGG - chr8_1:79680904-79680923 Msa1217420:intron 30.0%
CAAAGTAAACTAGTAGAAAC+TGG + chr8_1:79680959-79680978 None:intergenic 30.0%
CTCAATAAAAATCTCAGTCA+GGG + chr8_1:79681113-79681132 None:intergenic 30.0%
TCTCAATAAAAATCTCAGTC+AGG + chr8_1:79681114-79681133 None:intergenic 30.0%
! ACTGAGATTTTTATTGAGAG+AGG - chr8_1:79681115-79681134 Msa1217420:intron 30.0%
TTTACCCTAGAATAGTAGAA+TGG + chr8_1:79681153-79681172 None:intergenic 30.0%
AATAGCACAAACAAGAAGAA+AGG + chr8_1:79681233-79681252 None:intergenic 30.0%
ACATATGTTGTATGTACAAC+AGG - chr8_1:79681595-79681614 Msa1217420:intron 30.0%
AAGATGCAAAGAAAATTTCC+AGG + chr8_1:79681829-79681848 None:intergenic 30.0%
ACTTTGTATTGAAGATGTAC+GGG - chr8_1:79681980-79681999 Msa1217420:CDS 30.0%
TAATTCCACATACAATGACA+CGG + chr8_1:79682262-79682281 None:intergenic 30.0%
ATTAACTGTAAAAACACCGT+AGG - chr8_1:79682299-79682318 Msa1217420:five_prime_UTR 30.0%
GCTAGATATACAATAACCTA+CGG + chr8_1:79682318-79682337 None:intergenic 30.0%
GTTATTGTATATCTAGCCAT+TGG - chr8_1:79682321-79682340 Msa1217420:five_prime_UTR 30.0%
!!! AAATTTTAACTGCCAACCAA+TGG + chr8_1:79682340-79682359 None:intergenic 30.0%
!! TAATATTGGTTTGTTGTCGA+TGG - chr8_1:79682412-79682431 Msa1217420:five_prime_UTR 30.0%
ATCCAATCATATATCTCTCG+CGG - chr8_1:79675034-79675053 Msa1217420:three_prime_UTR 35.0%
!! TTGTTTCAAGTTCTGCAAGA+TGG + chr8_1:79675331-79675350 None:intergenic 35.0%
AATTCCCAGTTTCTACAAGA+AGG - chr8_1:79675409-79675428 Msa1217420:intron 35.0%
ACTACATGCCAATGGATAAA+AGG + chr8_1:79675517-79675536 None:intergenic 35.0%
TTTGTCAAACTACATGCCAA+TGG + chr8_1:79675525-79675544 None:intergenic 35.0%
! TTCTTCTCTCCTCTTCTTTT+GGG - chr8_1:79675737-79675756 Msa1217420:intron 35.0%
!! TGTTTTTGTCCCAAAAGAAG+AGG + chr8_1:79675749-79675768 None:intergenic 35.0%
! TTCTTCTAGAAACCTGAAGA+GGG - chr8_1:79675937-79675956 Msa1217420:CDS 35.0%
TTTGTTGAATGCCGATGATT+TGG - chr8_1:79676109-79676128 Msa1217420:intron 35.0%
ATATGCACCACAAAGTTCAT+GGG - chr8_1:79676328-79676347 Msa1217420:intron 35.0%
!! ATCGCAACTTTTGGAAACTT+GGG + chr8_1:79676489-79676508 None:intergenic 35.0%
!! AATCGCAACTTTTGGAAACT+TGG + chr8_1:79676490-79676509 None:intergenic 35.0%
!!! GTGCTATTTTCAAAATAGGG+GGG + chr8_1:79677426-79677445 None:intergenic 35.0%
TTTGACCGAGTCAAAATCAA+GGG + chr8_1:79677363-79677382 None:intergenic 35.0%
!!! TTTTTTTTTGTTGGCCATGC+TGG - chr8_1:79676623-79676642 Msa1217420:intron 35.0%
! GGTTTCTAATCTGGAATGAA+GGG + chr8_1:79676736-79676755 None:intergenic 35.0%
CGTACAAACCAAAATCCAAT+TGG - chr8_1:79676755-79676774 Msa1217420:intron 35.0%
! CCTAATTCCCAATTGGATTT+TGG + chr8_1:79676766-79676785 None:intergenic 35.0%
CCAAAATCCAATTGGGAATT+AGG - chr8_1:79676763-79676782 Msa1217420:intron 35.0%
ACTTAACCCTAATTCCCAAT+TGG + chr8_1:79676773-79676792 None:intergenic 35.0%
! TTTGAAATGAGAGTGGGATT+TGG + chr8_1:79676803-79676822 None:intergenic 35.0%
! TTTTTGCGAAAATCCACTTG+AGG - chr8_1:79677148-79677167 Msa1217420:intron 35.0%
! TTTTGCGAAAATCCACTTGA+GGG - chr8_1:79677149-79677168 Msa1217420:intron 35.0%
TTTGACCGAGTCAAAATCAA+GGG - chr8_1:79677363-79677382 Msa1217420:intron 35.0%
!!! GTGCTATTTTCAAAATAGGG+GGG - chr8_1:79677426-79677445 Msa1217420:intron 35.0%
!! TCGCAACTTTTGAAAACTTG+GGG - chr8_1:79677455-79677474 Msa1217420:intron 35.0%
TGAATGTAAGAGTCTCTAGT+GGG + chr8_1:79677652-79677671 None:intergenic 35.0%
ATGAATGTAAGAGTCTCTAG+TGG + chr8_1:79677653-79677672 None:intergenic 35.0%
TTACATTCATGCGAGCTTTA+TGG - chr8_1:79677663-79677682 Msa1217420:intron 35.0%
! TACATTCATGCGAGCTTTAT+GGG - chr8_1:79677664-79677683 Msa1217420:intron 35.0%
! GGGATGGATATTGACTATTA+GGG + chr8_1:79677704-79677723 None:intergenic 35.0%
GAATTACCGAACTAAAAGCA+TGG + chr8_1:79677731-79677750 None:intergenic 35.0%
GATTTCAACATACTCCTTCA+AGG - chr8_1:79677964-79677983 Msa1217420:CDS 35.0%
!! AAATTTTGAGAAGAACGAGG+TGG + chr8_1:79678085-79678104 None:intergenic 35.0%
!! GGTAAATTTTGAGAAGAACG+AGG + chr8_1:79678088-79678107 None:intergenic 35.0%
TAGAAGGACTAAAGAATCGT+CGG + chr8_1:79678290-79678309 None:intergenic 35.0%
TTAATTCTCATCGATACCTG+TGG - chr8_1:79678426-79678445 Msa1217420:intron 35.0%
ATACATTCATCAAGCTCAGA+TGG + chr8_1:79678504-79678523 None:intergenic 35.0%
!!! TCTAATGATTTTGGCTGTAC+AGG - chr8_1:79678556-79678575 Msa1217420:intron 35.0%
CGGATGAAATATTGATATGC+AGG + chr8_1:79679014-79679033 None:intergenic 35.0%
GATCAATCCACATAGATTGT+TGG + chr8_1:79679038-79679057 None:intergenic 35.0%
AAGTTCAAAGGGACCAAAAA+GGG + chr8_1:79679190-79679209 None:intergenic 35.0%
AAAGTTCAAAGGGACCAAAA+AGG + chr8_1:79679191-79679210 None:intergenic 35.0%
AAGTTGCATTTCCAGTTTCT+TGG - chr8_1:79679279-79679298 Msa1217420:intron 35.0%
! GACTGATTCATATAGATGCT+AGG - chr8_1:79679486-79679505 Msa1217420:intron 35.0%
TTTATTCGAAAGCTGCAATC+TGG + chr8_1:79679610-79679629 None:intergenic 35.0%
ATGAAGGGCTTGTATCTTAA+GGG - chr8_1:79679900-79679919 Msa1217420:intron 35.0%
GTCAAGTTAATGTGTGATAG+AGG + chr8_1:79680050-79680069 None:intergenic 35.0%
TGGCTTAGCTGAAATTGATT+GGG + chr8_1:79680271-79680290 None:intergenic 35.0%
TTGGCTTAGCTGAAATTGAT+TGG + chr8_1:79680272-79680291 None:intergenic 35.0%
CTAGATGGATGAACATATGT+TGG + chr8_1:79680291-79680310 None:intergenic 35.0%
GAGTTGAATACTATGATGCT+TGG + chr8_1:79680459-79680478 None:intergenic 35.0%
AAATAACATGGACATTCAGG+AGG + chr8_1:79680809-79680828 None:intergenic 35.0%
AATCAGTGTGATAGTAGCAA+TGG + chr8_1:79680873-79680892 None:intergenic 35.0%
TAAACATGTCTGCGGAAAAA+TGG + chr8_1:79681024-79681043 None:intergenic 35.0%
AAGAGCAATAAACATGTCTG+CGG + chr8_1:79681032-79681051 None:intergenic 35.0%
GCTCTTGATAAAGATTCAAG+CGG - chr8_1:79681046-79681065 Msa1217420:intron 35.0%
GTTATTACTAACAGTAGCCA+TGG - chr8_1:79681187-79681206 Msa1217420:CDS 35.0%
!! GTGCTATTATTTTTCACTGC+TGG - chr8_1:79681245-79681264 Msa1217420:intron 35.0%
ATTGCAACATATTTCAAGCC+AGG - chr8_1:79681268-79681287 Msa1217420:intron 35.0%
TTGCAACATATTTCAAGCCA+GGG - chr8_1:79681269-79681288 Msa1217420:intron 35.0%
!! GATGGATTTTGAGAGTTTCT+TGG - chr8_1:79681431-79681450 Msa1217420:intron 35.0%
GAGTTTCTTGGACTTTAATC+TGG - chr8_1:79681443-79681462 Msa1217420:intron 35.0%
ACAAATATGTCAAGCCTTCT+GGG + chr8_1:79681488-79681507 None:intergenic 35.0%
AACAAATATGTCAAGCCTTC+TGG + chr8_1:79681489-79681508 None:intergenic 35.0%
AGTGAATATCTGCTGTAGTA+AGG + chr8_1:79681542-79681561 None:intergenic 35.0%
! CAGATATTCACTCTCTTTTC+AGG - chr8_1:79681550-79681569 Msa1217420:intron 35.0%
! TTCTTTAGGAAGACTGTATC+AGG + chr8_1:79681718-79681737 None:intergenic 35.0%
! ACTGTTTATTTGAGACTTGC+AGG + chr8_1:79681778-79681797 None:intergenic 35.0%
!! GTACACCATAAATGGATTGA+TGG - chr8_1:79681945-79681964 Msa1217420:CDS 35.0%
CAACAGAGAAAATCTTCTAC+AGG - chr8_1:79682130-79682149 Msa1217420:CDS 35.0%
AATTCCACATACAATGACAC+GGG + chr8_1:79682261-79682280 None:intergenic 35.0%
TTGTATATCTAGCCATTGGT+TGG - chr8_1:79682325-79682344 Msa1217420:five_prime_UTR 35.0%
TTAGGACAAATAGGTGTAGG+AGG - chr8_1:79674897-79674916 Msa1217420:three_prime_UTR 40.0%
TCCAATCATATATCTCTCGC+GGG - chr8_1:79675035-79675054 Msa1217420:three_prime_UTR 40.0%
ATACGAACCCATCAAAGCTT+CGG + chr8_1:79675228-79675247 None:intergenic 40.0%
CATGCCTTCTTGTAGAAACT+GGG + chr8_1:79675416-79675435 None:intergenic 40.0%
ACATGCCTTCTTGTAGAAAC+TGG + chr8_1:79675417-79675436 None:intergenic 40.0%
! CTTTTCTTATCAACGAACCC+AGG + chr8_1:79675566-79675585 None:intergenic 40.0%
! AATGGTCTGCTCTAGATATC+AGG + chr8_1:79675604-79675623 None:intergenic 40.0%
CAAAAGAAGAGGAGAGAAGA+AGG + chr8_1:79675738-79675757 None:intergenic 40.0%
! CTTCTTCTCTCCTCTTCTTT+TGG - chr8_1:79675736-79675755 Msa1217420:intron 40.0%
AACAATATAGAGAGAGAGGG+AGG - chr8_1:79675765-79675784 Msa1217420:intron 40.0%
ACAATATAGAGAGAGAGGGA+GGG - chr8_1:79675766-79675785 Msa1217420:intron 40.0%
GAGTATGAGTTGTCCCAAAA+TGG - chr8_1:79675802-79675821 Msa1217420:CDS 40.0%
AGATTAGGATTGGGTTACTG+TGG - chr8_1:79675863-79675882 Msa1217420:CDS 40.0%
! CTTCTTCTAGAAACCTGAAG+AGG - chr8_1:79675936-79675955 Msa1217420:CDS 40.0%
!!! GGCCAAGTATCGTTTTTTGA+AGG - chr8_1:79675987-79676006 Msa1217420:intron 40.0%
CTCTATCTTTGCTTAGACAG+TGG - chr8_1:79676028-79676047 Msa1217420:intron 40.0%
TTCTCAATTAGTGACGTTGC+TGG - chr8_1:79676060-79676079 Msa1217420:intron 40.0%
CCACATTGCATCCAAATCAT+CGG + chr8_1:79676123-79676142 None:intergenic 40.0%
! CGATGATTTGGATGCAATGT+GGG - chr8_1:79676121-79676140 Msa1217420:intron 40.0%
!! TGTGTGATTGATGATGCTAC+TGG - chr8_1:79676161-79676180 Msa1217420:intron 40.0%
GATATGCACCACAAAGTTCA+TGG - chr8_1:79676327-79676346 Msa1217420:intron 40.0%
! TTTTCCAAAAACCAAGGGGT+TGG + chr8_1:79676359-79676378 None:intergenic 40.0%
AGATGAACACCTAGACTCTT+AGG - chr8_1:79676380-79676399 Msa1217420:intron 40.0%
GATGAACACCTAGACTCTTA+GGG - chr8_1:79676381-79676400 Msa1217420:intron 40.0%
TAGACTCTTAGGGTCTGTTT+GGG - chr8_1:79676391-79676410 Msa1217420:intron 40.0%
!!! TGATTTTGGAGGGCTTTAGA+GGG - chr8_1:79676418-79676437 Msa1217420:intron 40.0%
!! TCGCAACTTTTGGAAACTTG+GGG + chr8_1:79676488-79676507 None:intergenic 40.0%
TTGACCGAGTCAAAATCAAG+GGG + chr8_1:79677364-79677383 None:intergenic 40.0%
CTTTGACCGAGTCAAAATCA+AGG + chr8_1:79677362-79677381 None:intergenic 40.0%
! CGGTTTCTAATCTGGAATGA+AGG + chr8_1:79676737-79676756 None:intergenic 40.0%
GGTTTGTACGGTTTCTAATC+TGG + chr8_1:79676745-79676764 None:intergenic 40.0%
!! ACGTGCTTTGAAATGAGAGT+GGG + chr8_1:79676809-79676828 None:intergenic 40.0%
!! TACGTGCTTTGAAATGAGAG+TGG + chr8_1:79676810-79676829 None:intergenic 40.0%
TATTAAATCACGGTCACGTG+AGG - chr8_1:79677256-79677275 Msa1217420:intron 40.0%
ATTAAATCACGGTCACGTGA+GGG - chr8_1:79677257-79677276 Msa1217420:intron 40.0%
ATCCACATAGGCTGTCTATA+TGG - chr8_1:79677311-79677330 Msa1217420:intron 40.0%
CTTTGACCGAGTCAAAATCA+AGG - chr8_1:79677362-79677381 Msa1217420:intron 40.0%
!!! CATGACCCTTGATTTTGACT+CGG + chr8_1:79677371-79677390 None:intergenic 40.0%
!! AAGGGTCATGGTTTTGCAAA+GGG - chr8_1:79677381-79677400 Msa1217420:intron 40.0%
!! CGCAACTTTTGAAAACTTGG+GGG - chr8_1:79677456-79677475 Msa1217420:intron 40.0%
!! GCAACTTTTGAAAACTTGGG+GGG - chr8_1:79677457-79677476 Msa1217420:intron 40.0%
! AAGAGTCTCTAGTGGGATTT+TGG + chr8_1:79677645-79677664 None:intergenic 40.0%
! GGGGATGGATATTGACTATT+AGG + chr8_1:79677705-79677724 None:intergenic 40.0%
! CGAACTAAAAGCATGGAATG+GGG + chr8_1:79677724-79677743 None:intergenic 40.0%
! CCGAACTAAAAGCATGGAAT+GGG + chr8_1:79677725-79677744 None:intergenic 40.0%
!! CCCATTCCATGCTTTTAGTT+CGG - chr8_1:79677722-79677741 Msa1217420:intron 40.0%
! ACCGAACTAAAAGCATGGAA+TGG + chr8_1:79677726-79677745 None:intergenic 40.0%
ACACACCAAACTCCAGTTAA+AGG + chr8_1:79677898-79677917 None:intergenic 40.0%
CTAAAGAATCGTCGGCATTT+AGG + chr8_1:79678282-79678301 None:intergenic 40.0%
AAGTTTGAGAAGGATGAGCA+GGG - chr8_1:79678318-79678337 Msa1217420:intron 40.0%
CGCATCACGTAAAGGTAAAA+TGG + chr8_1:79678360-79678379 None:intergenic 40.0%
CAAAACAAACACAGAACCAC+AGG + chr8_1:79678445-79678464 None:intergenic 40.0%
TGATATGAGTGAGCTTGATG+AGG - chr8_1:79678601-79678620 Msa1217420:intron 40.0%
AAAAACATACGTGTGGCTGA+AGG + chr8_1:79678640-79678659 None:intergenic 40.0%
GAGATGTTATGCAGGGAAAA+TGG + chr8_1:79678861-79678880 None:intergenic 40.0%
AATCCACATAGATAGTTGGC+CGG + chr8_1:79678886-79678905 None:intergenic 40.0%
GACCAATCCACATAGATAGT+TGG + chr8_1:79678890-79678909 None:intergenic 40.0%
AATCCACATAGATTGTTGGC+CGG + chr8_1:79679034-79679053 None:intergenic 40.0%
AGTTCAAAGGGACCAAAAAG+GGG + chr8_1:79679189-79679208 None:intergenic 40.0%
!!! TCTTTGGTGTGTTTTGAAGC+TGG - chr8_1:79679251-79679270 Msa1217420:intron 40.0%
!!! CTTTGGTGTGTTTTGAAGCT+GGG - chr8_1:79679252-79679271 Msa1217420:intron 40.0%
! GAAATGGAAGCGTATATACG+AGG - chr8_1:79679345-79679364 Msa1217420:intron 40.0%
GTACGTAATTGTGCCAAGTT+GGG + chr8_1:79679378-79679397 None:intergenic 40.0%
AGTACGTAATTGTGCCAAGT+TGG + chr8_1:79679379-79679398 None:intergenic 40.0%
CTTGGCACAATTACGTACTA+TGG - chr8_1:79679380-79679399 Msa1217420:intron 40.0%
CAATTACGTACTATGGATGC+AGG - chr8_1:79679387-79679406 Msa1217420:intron 40.0%
GCAGCAATACGACAATACAT+TGG + chr8_1:79679420-79679439 None:intergenic 40.0%
! TTTTGTGATCCTCATAGACG+AGG - chr8_1:79679456-79679475 Msa1217420:intron 40.0%
!!! AGATGCTAGGTGCTGTTTTA+TGG - chr8_1:79679499-79679518 Msa1217420:intron 40.0%
!! ATTTTAATCGACAGCAGCAG+TGG - chr8_1:79679827-79679846 Msa1217420:intron 40.0%
CATGAAGGGCTTGTATCTTA+AGG - chr8_1:79679899-79679918 Msa1217420:intron 40.0%
CATTTAGTCATTGCACTAGC+CGG - chr8_1:79680159-79680178 Msa1217420:intron 40.0%
ATTTAGTCATTGCACTAGCC+GGG - chr8_1:79680160-79680179 Msa1217420:intron 40.0%
GGCTTAGCTGAAATTGATTG+GGG + chr8_1:79680270-79680289 None:intergenic 40.0%
AACTGTGAAATATGAGCACC+AGG + chr8_1:79680589-79680608 None:intergenic 40.0%
TGGTGCTCATATTTCACAGT+TGG - chr8_1:79680588-79680607 Msa1217420:intron 40.0%
!! ATGTGGTGGGTATCTTACAT+TGG - chr8_1:79680783-79680802 Msa1217420:intron 40.0%
CCAGCTAACACAGAATGATA+AGG + chr8_1:79680935-79680954 None:intergenic 40.0%
CCTTATCATTCTGTGTTAGC+TGG - chr8_1:79680932-79680951 Msa1217420:intron 40.0%
GAAGAAAGGAGAACAGACAA+GGG + chr8_1:79681219-79681238 None:intergenic 40.0%
AGAAGAAAGGAGAACAGACA+AGG + chr8_1:79681220-79681239 None:intergenic 40.0%
CAAATATGTCAAGCCTTCTG+GGG + chr8_1:79681487-79681506 None:intergenic 40.0%
TTTCGTTGCCTTGATCTTCA+AGG - chr8_1:79681507-79681526 Msa1217420:intron 40.0%
TTCGTTGCCTTGATCTTCAA+GGG - chr8_1:79681508-79681527 Msa1217420:intron 40.0%
! GAATATTTTACCACGACTGC+TGG - chr8_1:79681655-79681674 Msa1217420:intron 40.0%
ACAGAGACGTACACCATAAA+TGG - chr8_1:79681937-79681956 Msa1217420:CDS 40.0%
!! CACCATAAATGGATTGATGG+TGG - chr8_1:79681948-79681967 Msa1217420:CDS 40.0%
TGCCACCATCAATCCATTTA+TGG + chr8_1:79681953-79681972 None:intergenic 40.0%
AAGATGTACGGGATGAAATC+TGG - chr8_1:79681991-79682010 Msa1217420:intron 40.0%
AGATGTACGGGATGAAATCT+GGG - chr8_1:79681992-79682011 Msa1217420:intron 40.0%
AGATGACCTCAAGATCACAT+TGG - chr8_1:79682031-79682050 Msa1217420:intron 40.0%
GACAAATAGGTGTAGGAGGT+TGG - chr8_1:79674901-79674920 Msa1217420:three_prime_UTR 45.0%
TAAGCAACCGGACGCAAAAA+CGG + chr8_1:79674993-79675012 None:intergenic 45.0%
! TTTTGCGTCCGGTTGCTTAT+CGG - chr8_1:79674994-79675013 Msa1217420:three_prime_UTR 45.0%
! GATTGGATCTGAGATACCGT+TGG + chr8_1:79675022-79675041 None:intergenic 45.0%
ACCCGCGAGAGATATATGAT+TGG + chr8_1:79675039-79675058 None:intergenic 45.0%
GCGGGTTTCGATTAGAGTTA+GGG - chr8_1:79675053-79675072 Msa1217420:three_prime_UTR 45.0%
! GAAGGTTGGTTGTCACAACA+TGG + chr8_1:79675720-79675739 None:intergenic 45.0%
AGAAGAGGAGAGAAGAAGGT+TGG + chr8_1:79675734-79675753 None:intergenic 45.0%
TGACTGATTGATCCCTCTTC+AGG + chr8_1:79675952-79675971 None:intergenic 45.0%
AACGATACTTGGCCAATCTC+TGG + chr8_1:79675981-79676000 None:intergenic 45.0%
! CCGATGATTTGGATGCAATG+TGG - chr8_1:79676120-79676139 Msa1217420:intron 45.0%
TGATGCTACTGGTGCAGAAA+AGG - chr8_1:79676172-79676191 Msa1217420:intron 45.0%
GGTTACTCCCATGAACTTTG+TGG + chr8_1:79676338-79676357 None:intergenic 45.0%
!! GTAACCAACCCCTTGGTTTT+TGG - chr8_1:79676352-79676371 Msa1217420:intron 45.0%
CAAACAGACCCTAAGAGTCT+AGG + chr8_1:79676392-79676411 None:intergenic 45.0%
CTAGACTCTTAGGGTCTGTT+TGG - chr8_1:79676390-79676409 Msa1217420:intron 45.0%
! TCTGTTTGGGAGGGTGATTT+TGG - chr8_1:79676404-79676423 Msa1217420:intron 45.0%
! TTTGGGAGGGTGATTTTGGA+GGG - chr8_1:79676408-79676427 Msa1217420:intron 45.0%
!! GTGATTTTGGAGGGCTTTAG+AGG - chr8_1:79676417-79676436 Msa1217420:intron 45.0%
!! CGCAACTTTTGGAAACTTGG+GGG + chr8_1:79676487-79676506 None:intergenic 45.0%
! GGGGCAAAAATCGCAACTTT+TGG + chr8_1:79677445-79677464 None:intergenic 45.0%
TTGCAAAGGGGCTGAAACTT+GGG + chr8_1:79677394-79677413 None:intergenic 45.0%
TTTGCAAAGGGGCTGAAACT+TGG + chr8_1:79677393-79677412 None:intergenic 45.0%
! GGGATCAAGGTTTTGCAAAG+GGG + chr8_1:79676561-79676580 None:intergenic 45.0%
! GGGGATCAAGGTTTTGCAAA+GGG + chr8_1:79676562-79676581 None:intergenic 45.0%
GTCAAAATCAAGGGGGATCA+AGG + chr8_1:79676574-79676593 None:intergenic 45.0%
!!! GATCCCCCTTGATTTTGACT+CGG - chr8_1:79676575-79676594 Msa1217420:CDS 45.0%
TGACCGAGTCAAAATCAAGG+GGG + chr8_1:79677365-79677384 None:intergenic 45.0%
! TGAGAGTGGGATTTGGAGTT+TGG + chr8_1:79676796-79676815 None:intergenic 45.0%
TGCCATATAGACAGCCTATG+TGG + chr8_1:79677316-79677335 None:intergenic 45.0%
CGAGTCAAAATCAAGGGTCA+TGG - chr8_1:79677369-79677388 Msa1217420:intron 45.0%
!! CAAGGGTCATGGTTTTGCAA+AGG - chr8_1:79677380-79677399 Msa1217420:intron 45.0%
!! AGGGTCATGGTTTTGCAAAG+GGG - chr8_1:79677382-79677401 Msa1217420:intron 45.0%
TTTGCAAAGGGGCTGAAACT+TGG - chr8_1:79677393-79677412 Msa1217420:intron 45.0%
TTGCAAAGGGGCTGAAACTT+GGG - chr8_1:79677394-79677413 Msa1217420:intron 45.0%
!! TCTCTAGTGGGATTTTGGAG+GGG + chr8_1:79677640-79677659 None:intergenic 45.0%
! GTCTCTAGTGGGATTTTGGA+GGG + chr8_1:79677641-79677660 None:intergenic 45.0%
! AGTCTCTAGTGGGATTTTGG+AGG + chr8_1:79677642-79677661 None:intergenic 45.0%
! CTAAAAGCATGGAATGGGGA+TGG + chr8_1:79677720-79677739 None:intergenic 45.0%
!! GAGTTTGGTGTGTCATGCAA+TGG - chr8_1:79677905-79677924 Msa1217420:CDS 45.0%
GGCAAAATCAGCATCCTTGA+AGG + chr8_1:79677981-79678000 None:intergenic 45.0%
CTGTACATACAGAGGCAATG+TGG + chr8_1:79678248-79678267 None:intergenic 45.0%
GAAGTTTGAGAAGGATGAGC+AGG - chr8_1:79678317-79678336 Msa1217420:intron 45.0%
TTACCTTTACGTGATGCGCA+CGG - chr8_1:79678362-79678381 Msa1217420:intron 45.0%
GAGCTTGATGAGGATTCTGA+TGG - chr8_1:79678611-79678630 Msa1217420:intron 45.0%
TCCCTGCATAACATCTCATC+CGG - chr8_1:79678864-79678883 Msa1217420:intron 45.0%
GGCCAACTATCTATGTGGAT+TGG - chr8_1:79678885-79678904 Msa1217420:intron 45.0%
! TCGCAAGTCAATCCCCTTTT+TGG - chr8_1:79679174-79679193 Msa1217420:intron 45.0%
! ACGAGGTCTTATACCCAACT+TGG - chr8_1:79679362-79679381 Msa1217420:intron 45.0%
TGATCCTCATAGACGAGGTT+TGG - chr8_1:79679461-79679480 Msa1217420:intron 45.0%
TCATCCAAACCTCGTCTATG+AGG + chr8_1:79679468-79679487 None:intergenic 45.0%
! TTCTGGTGGTTTGAGGTTGA+CGG - chr8_1:79680112-79680131 Msa1217420:intron 45.0%
CGGCTAGTGCAATGACTAAA+TGG + chr8_1:79680161-79680180 None:intergenic 45.0%
TTTAGTCATTGCACTAGCCG+GGG - chr8_1:79680161-79680180 Msa1217420:intron 45.0%
GCTGCTGAGTAATTGTCTTC+AGG - chr8_1:79680373-79680392 Msa1217420:intron 45.0%
GGAACTAATGGAGCTTCATC+AGG - chr8_1:79680394-79680413 Msa1217420:intron 45.0%
CTAATGGAGCTTCATCAGGT+AGG - chr8_1:79680398-79680417 Msa1217420:intron 45.0%
TGTGAAATATGAGCACCAGG+AGG + chr8_1:79680586-79680605 None:intergenic 45.0%
AGAAGTCACAGACACAGAAC+AGG - chr8_1:79680723-79680742 Msa1217420:intron 45.0%
ACACAGAACAGGCTGAAAAC+TGG - chr8_1:79680734-79680753 Msa1217420:intron 45.0%
AGCTGCGAGAATATGCAGAT+GGG - chr8_1:79681086-79681105 Msa1217420:intron 45.0%
! AGAGTTGTGGTGGAAAGACA+AGG - chr8_1:79681406-79681425 Msa1217420:intron 45.0%
! GAGTTGTGGTGGAAAGACAA+GGG - chr8_1:79681407-79681426 Msa1217420:intron 45.0%
GAAAACAAAGACACCCCAGA+AGG - chr8_1:79681471-79681490 Msa1217420:intron 45.0%
TTGCCTTGATCTTCAAGGGA+GGG - chr8_1:79681512-79681531 Msa1217420:intron 45.0%
TTCTATACTTCCAGCAGTCG+TGG + chr8_1:79681668-79681687 None:intergenic 45.0%
! ACGACTGCTGGAAGTATAGA+AGG - chr8_1:79681667-79681686 Msa1217420:intron 45.0%
! CGACTGCTGGAAGTATAGAA+GGG - chr8_1:79681668-79681687 Msa1217420:intron 45.0%
! GACTGCTGGAAGTATAGAAG+GGG - chr8_1:79681669-79681688 Msa1217420:intron 45.0%
GACTGTATCAGGCAACATCT+CGG + chr8_1:79681707-79681726 None:intergenic 45.0%
CTTGCTCAAGCACTACAAGT+AGG + chr8_1:79681755-79681774 None:intergenic 45.0%
! ACGGGATGAAATCTGGGATA+TGG - chr8_1:79681998-79682017 Msa1217420:intron 45.0%
GATCAGCCAATGTGATCTTG+AGG + chr8_1:79682040-79682059 None:intergenic 45.0%
! GATCACATTGGCTGATCTAC+TGG - chr8_1:79682043-79682062 Msa1217420:intron 45.0%
! TACAGTACCACCTTGTTTGC+AGG + chr8_1:79682069-79682088 None:intergenic 45.0%
CTAGCATGCTCATAGATGTG+CGG - chr8_1:79682090-79682109 Msa1217420:intron 45.0%
TAGCATGCTCATAGATGTGC+GGG - chr8_1:79682091-79682110 Msa1217420:intron 45.0%
ACAGGAAGAAGAAGAACCAG+AGG - chr8_1:79682148-79682167 Msa1217420:CDS 45.0%
GAGCAGATCTATTCTTCCTC+TGG + chr8_1:79682167-79682186 None:intergenic 45.0%
GAGGAAGAATAGATCTGCTC+CGG - chr8_1:79682167-79682186 Msa1217420:CDS 45.0%
AGGAAGAATAGATCTGCTCC+GGG - chr8_1:79682168-79682187 Msa1217420:CDS 45.0%
AGCTTTCTGTTAGCATGACC+CGG + chr8_1:79682189-79682208 None:intergenic 45.0%
! GTAACCCGTGTCATTGTATG+TGG - chr8_1:79682254-79682273 Msa1217420:five_prime_UTR 45.0%
!!! TATATATATATTACAATTTT+TGG + chr8_1:79676266-79676285 None:intergenic 5.0%
!! AAATTAGTATATTAAATTAT+GGG - chr8_1:79681801-79681820 Msa1217420:intron 5.0%
!! GCTTTCACCGTTTTTGCGTC+CGG - chr8_1:79674983-79675002 Msa1217420:three_prime_UTR 50.0%
CGCGGGTTTCGATTAGAGTT+AGG - chr8_1:79675052-79675071 Msa1217420:three_prime_UTR 50.0%
! GGGATTTTCCTCTGGGTTTG+AGG + chr8_1:79675137-79675156 None:intergenic 50.0%
CGATGAAACGACGGAGATTG+CGG + chr8_1:79675184-79675203 None:intergenic 50.0%
CGCAATCTCCGTCGTTTCAT+CGG - chr8_1:79675182-79675201 Msa1217420:CDS 50.0%
! TCTCGGATCCGAAGCTTTGA+TGG - chr8_1:79675217-79675236 Msa1217420:CDS 50.0%
! CTCGGATCCGAAGCTTTGAT+GGG - chr8_1:79675218-79675237 Msa1217420:CDS 50.0%
!! CAGAAGAAAAGCGCTGAAGC+TGG - chr8_1:79675383-79675402 Msa1217420:intron 50.0%
CAGTCAGAGAGTCCAGAGAT+TGG - chr8_1:79675966-79675985 Msa1217420:intron 50.0%
ACTCTTAGGGTCTGTTTGGG+AGG - chr8_1:79676394-79676413 Msa1217420:intron 50.0%
CTCTTAGGGTCTGTTTGGGA+GGG - chr8_1:79676395-79676414 Msa1217420:intron 50.0%
! GTTTGGGAGGGTGATTTTGG+AGG - chr8_1:79676407-79676426 Msa1217420:intron 50.0%
TGCAAAGGGGCTGAAACTTG+GGG + chr8_1:79677395-79677414 None:intergenic 50.0%
! GGGGGATCAAGGTTTTGCAA+AGG + chr8_1:79676563-79676582 None:intergenic 50.0%
TGCAAAGGGGCTGAAACTTG+GGG - chr8_1:79677395-79677414 Msa1217420:intron 50.0%
! TGATCCCACGTAGTGGGATA+CGG + chr8_1:79677773-79677792 None:intergenic 50.0%
AACTGCTGATCCCACGTAGT+GGG + chr8_1:79677779-79677798 None:intergenic 50.0%
AAACTGCTGATCCCACGTAG+TGG + chr8_1:79677780-79677799 None:intergenic 50.0%
ACTACGTGGGATCAGCAGTT+TGG - chr8_1:79677779-79677798 Msa1217420:intron 50.0%
AGAATAGCACTCGAGGGCAA+AGG + chr8_1:79678167-79678186 None:intergenic 50.0%
CCGTCAAGAATAGCACTCGA+GGG + chr8_1:79678173-79678192 None:intergenic 50.0%
! CCCTCGAGTGCTATTCTTGA+CGG - chr8_1:79678170-79678189 Msa1217420:intron 50.0%
TCCGTCAAGAATAGCACTCG+AGG + chr8_1:79678174-79678193 None:intergenic 50.0%
GCCGGATGAGATGTTATGCA+GGG + chr8_1:79678868-79678887 None:intergenic 50.0%
CATCCGGCCAACTATCTATG+TGG - chr8_1:79678880-79678899 Msa1217420:intron 50.0%
CATCCGGCCAACAATCTATG+TGG - chr8_1:79679028-79679047 Msa1217420:CDS 50.0%
!! CTGATGAGGCTTTGAGCGTT+AGG - chr8_1:79680004-79680023 Msa1217420:intron 50.0%
! TCTGGTGGTTTGAGGTTGAC+GGG - chr8_1:79680113-79680132 Msa1217420:intron 50.0%
GCCATTATTCTCTCATGCCC+CGG + chr8_1:79680181-79680200 None:intergenic 50.0%
ATACCCACCACATACACGTC+GGG + chr8_1:79680776-79680795 None:intergenic 50.0%
GATACCCACCACATACACGT+CGG + chr8_1:79680777-79680796 None:intergenic 50.0%
GAGCTGCGAGAATATGCAGA+TGG - chr8_1:79681085-79681104 Msa1217420:intron 50.0%
ACAGACAAGGGCAGTAACCA+TGG + chr8_1:79681207-79681226 None:intergenic 50.0%
CACAATGCACATTGACACCC+TGG + chr8_1:79681289-79681308 None:intergenic 50.0%
ACATGTTCGTCGAACACTGC+AGG + chr8_1:79681375-79681394 None:intergenic 50.0%
TTCCACCACAACTCTTTCCG+CGG + chr8_1:79681401-79681420 None:intergenic 50.0%
TGGTGGAAAGACAAGGGAGA+TGG - chr8_1:79681413-79681432 Msa1217420:intron 50.0%
GTTGCCTTGATCTTCAAGGG+AGG - chr8_1:79681511-79681530 Msa1217420:intron 50.0%
TGCCTTGATCTTCAAGGGAG+GGG - chr8_1:79681513-79681532 Msa1217420:intron 50.0%
AACCCCTCCCTTGAAGATCA+AGG + chr8_1:79681518-79681537 None:intergenic 50.0%
TCAGGCAACATCTCGGCATA+TGG + chr8_1:79681700-79681719 None:intergenic 50.0%
GTGATCTTGAGGTCATCTGC+TGG + chr8_1:79682029-79682048 None:intergenic 50.0%
! GATCTACTGGCCTGCAAACA+AGG - chr8_1:79682056-79682075 Msa1217420:intron 50.0%
AGCATGCTCATAGATGTGCG+GGG - chr8_1:79682092-79682111 Msa1217420:intron 50.0%
TCATAGATGTGCGGGGTTTC+TGG - chr8_1:79682099-79682118 Msa1217420:CDS 50.0%
CATAGATGTGCGGGGTTTCT+GGG - chr8_1:79682100-79682119 Msa1217420:CDS 50.0%
!! CGTTGGCTCCGATAAGCAAC+CGG + chr8_1:79675005-79675024 None:intergenic 55.0%
CGGTTGCTTATCGGAGCCAA+CGG - chr8_1:79675003-79675022 Msa1217420:three_prime_UTR 55.0%
!! CTGGGTTTGAGGAGCGTCAT+GGG + chr8_1:79675126-79675145 None:intergenic 55.0%
!! TCTGGGTTTGAGGAGCGTCA+TGG + chr8_1:79675127-79675146 None:intergenic 55.0%
ATGACGCTCCTCAAACCCAG+AGG - chr8_1:79675126-79675145 Msa1217420:three_prime_UTR 55.0%
! TGCAGGGGGGATTTTCCTCT+GGG + chr8_1:79675144-79675163 None:intergenic 55.0%
! ATGCAGGGGGGATTTTCCTC+TGG + chr8_1:79675145-79675164 None:intergenic 55.0%
CTCCGTCGTTTCATCGGATC+CGG - chr8_1:79675188-79675207 Msa1217420:CDS 55.0%
CACCGGATCCGATGAAACGA+CGG + chr8_1:79675193-79675212 None:intergenic 55.0%
CAAAGCTTCGGATCCGAGAC+CGG + chr8_1:79675216-79675235 None:intergenic 55.0%
CATGGGAGTAACCAACCCCT+TGG - chr8_1:79676345-79676364 Msa1217420:intron 55.0%
!! TTGGAGGGCTTTAGAGGGCT+AGG - chr8_1:79676423-79676442 Msa1217420:intron 55.0%
CAAAGGGGCTGAAACTTGGG+GGG + chr8_1:79677397-79677416 None:intergenic 55.0%
GCAAAGGGGCTGAAACTTGG+GGG + chr8_1:79677396-79677415 None:intergenic 55.0%
GCAAAGGGGCTGAAACTTGG+GGG - chr8_1:79677396-79677415 Msa1217420:intron 55.0%
CAAAGGGGCTGAAACTTGGG+GGG - chr8_1:79677397-79677416 Msa1217420:intron 55.0%
!! CGGCTTGGTGGTTGTTGTTG+AGG + chr8_1:79677753-79677772 None:intergenic 55.0%
CAAGCCGTATCCCACTACGT+GGG - chr8_1:79677766-79677785 Msa1217420:intron 55.0%
CTACCGTGCGCATCACGTAA+AGG + chr8_1:79678368-79678387 None:intergenic 55.0%
CTTTACGTGATGCGCACGGT+AGG - chr8_1:79678366-79678385 Msa1217420:intron 55.0%
GGCCGGATGAGATGTTATGC+AGG + chr8_1:79678869-79678888 None:intergenic 55.0%
! CTGGTGGTTTGAGGTTGACG+GGG - chr8_1:79680114-79680133 Msa1217420:intron 55.0%
TTGAGGTTGACGGGGTAGCA+AGG - chr8_1:79680122-79680141 Msa1217420:intron 55.0%
TGAGGTTGACGGGGTAGCAA+GGG - chr8_1:79680123-79680142 Msa1217420:intron 55.0%
GCCGGGGCATGAGAGAATAA+TGG - chr8_1:79680177-79680196 Msa1217420:intron 55.0%
! TGTGGTTGGTCCTCTTGTCC+AGG - chr8_1:79680559-79680578 Msa1217420:intron 55.0%
ATATGAGCACCAGGAGGACC+TGG + chr8_1:79680580-79680599 None:intergenic 55.0%
ACTTCTGCCCGACGTGTATG+TGG - chr8_1:79680766-79680785 Msa1217420:intron 55.0%
TTCGACGAACATGTTCGCCG+CGG - chr8_1:79681381-79681400 Msa1217420:intron 55.0%
! CTACTGGCCTGCAAACAAGG+TGG - chr8_1:79682059-79682078 Msa1217420:intron 55.0%
CAACCGGCGATGTACAGCGA+CGG - chr8_1:79675095-79675114 Msa1217420:three_prime_UTR 60.0%
ACAGCATGGAGGATGCAGGG+GGG + chr8_1:79675157-79675176 None:intergenic 60.0%
CACAGCATGGAGGATGCAGG+GGG + chr8_1:79675158-79675177 None:intergenic 60.0%
CCACAGCATGGAGGATGCAG+GGG + chr8_1:79675159-79675178 None:intergenic 60.0%
CCCACAGCATGGAGGATGCA+GGG + chr8_1:79675160-79675179 None:intergenic 60.0%
CCCTGCATCCTCCATGCTGT+GGG - chr8_1:79675157-79675176 Msa1217420:exon 60.0%
ACCCACAGCATGGAGGATGC+AGG + chr8_1:79675161-79675180 None:intergenic 60.0%
ATTGCGGACCCACAGCATGG+AGG + chr8_1:79675168-79675187 None:intergenic 60.0%
GAGATTGCGGACCCACAGCA+TGG + chr8_1:79675171-79675190 None:intergenic 60.0%
CGTTTCATCGGATCCGGTGC+CGG - chr8_1:79675194-79675213 Msa1217420:CDS 60.0%
! ACGGTCACGTGAGGGTGTGA+GGG - chr8_1:79677265-79677284 Msa1217420:intron 60.0%
! CGTAGTGGGATACGGCTTGG+TGG + chr8_1:79677765-79677784 None:intergenic 60.0%
! CCACGTAGTGGGATACGGCT+TGG + chr8_1:79677768-79677787 None:intergenic 60.0%
CCAAGCCGTATCCCACTACG+TGG - chr8_1:79677765-79677784 Msa1217420:intron 60.0%
TCCTCTTGTCCAGGTCCTCC+TGG - chr8_1:79680568-79680587 Msa1217420:intron 60.0%
ACCAGGAGGACCTGGACAAG+AGG + chr8_1:79680572-79680591 None:intergenic 60.0%
TCTGCCCGACGTGTATGTGG+TGG - chr8_1:79680769-79680788 Msa1217420:intron 60.0%
CTGCCCGACGTGTATGTGGT+GGG - chr8_1:79680770-79680789 Msa1217420:intron 60.0%
GTTCGCCGCGGAAAGAGTTG+TGG - chr8_1:79681393-79681412 Msa1217420:intron 60.0%
TCGCCGTCGCTGTACATCGC+CGG + chr8_1:79675101-79675120 None:intergenic 65.0%
CCCCTGCATCCTCCATGCTG+TGG - chr8_1:79675156-79675175 Msa1217420:exon 65.0%
!! ATCGGATCCGGTGCCGGTCT+CGG - chr8_1:79675200-79675219 Msa1217420:CDS 65.0%
TTCGGATCCGAGACCGGCAC+CGG + chr8_1:79675210-79675229 None:intergenic 65.0%
! CACGGTCACGTGAGGGTGTG+AGG - chr8_1:79677264-79677283 Msa1217420:intron 65.0%
CGCCGCGGAAAGAGTTGTGG+TGG - chr8_1:79681396-79681415 Msa1217420:intron 65.0%
! CGCGCGCGCGCGTGTGTGGT+TGG - chr8_1:79680545-79680564 Msa1217420:intron 80.0%
! CGCGCGCGCGCGCGCGTGTG+TGG - chr8_1:79680541-79680560 Msa1217420:intron 90.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 79674895 79682443 79674895 ID=Msa1217420;Name=Msa1217420
chr8_1 mRNA 79674895 79682443 79674895 ID=Msa1217420-mRNA-1;Parent=Msa1217420;Name=Msa1217420-mRNA-1;_AED=0.13;_eAED=0.13;_QI=209|1|1|1|1|1|12|265|475
chr8_1 exon 79674895 79675397 79674895 ID=Msa1217420-mRNA-1:exon:27817;Parent=Msa1217420-mRNA-1
chr8_1 exon 79675767 79675959 79675767 ID=Msa1217420-mRNA-1:exon:27816;Parent=Msa1217420-mRNA-1
chr8_1 exon 79676202 79676303 79676202 ID=Msa1217420-mRNA-1:exon:27815;Parent=Msa1217420-mRNA-1
chr8_1 exon 79676551 79676626 79676551 ID=Msa1217420-mRNA-1:exon:27814;Parent=Msa1217420-mRNA-1
chr8_1 exon 79676923 79676987 79676923 ID=Msa1217420-mRNA-1:exon:27813;Parent=Msa1217420-mRNA-1
chr8_1 exon 79677861 79677993 79677861 ID=Msa1217420-mRNA-1:exon:27812;Parent=Msa1217420-mRNA-1
chr8_1 exon 79678689 79678760 79678689 ID=Msa1217420-mRNA-1:exon:27811;Parent=Msa1217420-mRNA-1
chr8_1 exon 79678955 79679113 79678955 ID=Msa1217420-mRNA-1:exon:27810;Parent=Msa1217420-mRNA-1
chr8_1 exon 79681145 79681243 79681145 ID=Msa1217420-mRNA-1:exon:27809;Parent=Msa1217420-mRNA-1
chr8_1 exon 79681330 79681392 79681330 ID=Msa1217420-mRNA-1:exon:27808;Parent=Msa1217420-mRNA-1
chr8_1 exon 79681908 79681999 79681908 ID=Msa1217420-mRNA-1:exon:27807;Parent=Msa1217420-mRNA-1
chr8_1 exon 79682099 79682443 79682099 ID=Msa1217420-mRNA-1:exon:27806;Parent=Msa1217420-mRNA-1
chr8_1 five_prime_UTR 79682235 79682443 79682235 ID=Msa1217420-mRNA-1:five_prime_utr;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79682099 79682234 79682099 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79681908 79681999 79681908 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79681330 79681392 79681330 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79681145 79681243 79681145 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79678955 79679113 79678955 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79678689 79678760 79678689 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79677861 79677993 79677861 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79676923 79676987 79676923 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79676551 79676626 79676551 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79676202 79676303 79676202 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79675767 79675959 79675767 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 CDS 79675160 79675397 79675160 ID=Msa1217420-mRNA-1:cds;Parent=Msa1217420-mRNA-1
chr8_1 three_prime_UTR 79674895 79675159 79674895 ID=Msa1217420-mRNA-1:three_prime_utr;Parent=Msa1217420-mRNA-1
Gene Sequence

>Msa1217420

ATGTACAGCGACGGCGAAGCCCATGACGCTCCTCAAACCCAGAGGAAAATCCCCCCTGCATCCTCCATGCTGTGGGTCCGCAATCTCCGTCGTTTCATCGGATCCGGTGCCGGTCTCGGATCCGAAGCTTTGATGGAACTTGAAACAAAAAGAATCTTGCTTGACATTTTTAAAGATAAGCAGAAGAAAAGCGCTGAAGCTGGTACAATTCCCAGTTTCTACAAGAAGAAACCTGAAGAGGGATCAATCAGTCAGAGAGTCCAGAGATTGGCCAAGTATCGTTTTTTGAAGAAACAATCAGATCTTTTGTTGAATGCCGATGATTTGGATGCAATGTGGGTGTGCTTAAGAGAAAACTGTGTGATTGATGATGCTACTGGTGCAGAAAAGATGAATTATGAAGATTTTTGCCACATTGCCTCTGTATGTACAGAACAAATAGGTCCTAAATGCCGACGATTCTTTAGTCCTTCTAACTTTATGAAGTTTGAGAAGGATGAGCAGGGAAGAATTGCCATTCTACCATTTTACCTTTACGTGATGCGCACGGTTTCACTTACACAAGCAAGAATTGATATGAGTGAGCTTGATGAGGATTCTGATGGTTTCCTTCAGCCACACGAAATGGAAGCGTATATACGAGGTCTTATACCCAACTTGGCACAATTACGTACTATGGATGCAGGCTTTGTTCCAATGTATTGTCGTATTGCTGCTCACAAATTCTTCTTCTTTTGTGATCCTCATAGACGAGGTAAAGCTTGCATCAAGAAAGTGCTGCTGAGTAATTGTCTTCAGGAACTAATGGAGCTTCATCAGGAAAGCGAAGAAGAAGTCACAGACACAGAACAGGCTGAAAACTGGTTCTCTCAGACTTCTGCCCGACGTGTATGTGACATGTTTATTGCTCTTGATAAAGATTCAAGCGGTTCATTGAGCAAGCATGAGCTGCGAGAATATGCAGATGGGACCCTGACTGAGATTTTTATTGAGAGAGTGTTCGACGAACATGTTCGCCGCGGAAAGAGTTGTGGTGGAAAGACAAGGGAGATGGATTTTGAGAGTTTCTTGGACTTTAATCTGGCTTTAGAAAACAAAGACACCCCAGAAGGCTTGACATATTTGTTTCGTTGCCTTGATCTTCAAGGGAGGGGTTACCTTACTACAGCAGATATTCACTCTCTTTTCAGAGACGTACACCATAAATGGATTGATGGTGGCAACTATGAACTTTGTATTGAAGATGTACGGGATGAAATCTGGGATATGGTTAAGCCAGCAGATGACCTCAAGATCACATTGGCTGATCTACTGGCCTGCAAACAAGGTGGTACTGTAGCTAGCATGCTCATAGATGTGCGGGGTTTCTGGGCTCATGACAACAGAGAAAATCTTCTACAGGAAGAAGAAGAACCAGAGGAAGAATAG

Protein sequence

>Msa1217420

MYSDGEAHDAPQTQRKIPPASSMLWVRNLRRFIGSGAGLGSEALMELETKRILLDIFKDKQKKSAEAGTIPSFYKKKPEEGSISQRVQRLAKYRFLKKQSDLLLNADDLDAMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKFEKDEQGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPNLAQLRTMDAGFVPMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCLQELMELHQESEEEVTDTEQAENWFSQTSARRVCDMFIALDKDSSGSLSKHELREYADGTLTEIFIERVFDEHVRRGKSCGGKTREMDFESFLDFNLALENKDTPEGLTYLFRCLDLQGRGYLTTADIHSLFRDVHHKWIDGGNYELCIEDVRDEIWDMVKPADDLKITLADLLACKQGGTVASMLIDVRGFWAHDNRENLLQEEEEPEEE*