Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349470 | XP_003600872.1 | 96.975 | 628 | 15 | 2 | 1 | 626 | 1 | 626 | 0.0 | 1253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349470 | sp|Q9ZT48|ATE1_ARATH | 52.000 | 650 | 260 | 11 | 6 | 625 | 4 | 631 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349470 | G7JB71 | 96.975 | 628 | 15 | 2 | 1 | 626 | 1 | 626 | 0.0 | 1253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076290 | Msa0349470 | 0.816889 | 4.382015e-52 | -8.615850e-47 |
| Msa0274980 | Msa0349470 | 0.811240 | 7.728595e-51 | -8.615850e-47 |
| Msa0315690 | Msa0349470 | 0.818157 | 2.269279e-52 | -8.615850e-47 |
| Msa0349470 | Msa0372000 | 0.932450 | 8.360347e-95 | -8.615850e-47 |
| Msa0349470 | Msa0416510 | 0.932683 | 5.889135e-95 | -8.615850e-47 |
| Msa0349470 | Msa0437270 | 0.981244 | 4.038913e-152 | -8.615850e-47 |
| Msa0349470 | Msa0550010 | 0.802056 | 6.722901e-49 | -8.615850e-47 |
| Msa0349470 | Msa0556230 | -0.817861 | 2.647158e-52 | -8.615850e-47 |
| Msa0349470 | Msa0610250 | 0.807755 | 4.328481e-50 | -8.615850e-47 |
| Msa0349470 | Msa0673120 | 0.815531 | 8.813783e-52 | -8.615850e-47 |
| Msa0349470 | Msa0674480 | 0.806996 | 6.271421e-50 | -8.615850e-47 |
| Msa0349470 | Msa0689250 | 0.821694 | 3.524126e-53 | -8.615850e-47 |
| Msa0349470 | Msa0697590 | 0.803735 | 3.024911e-49 | -8.615850e-47 |
| Msa0349470 | Msa0858390 | 0.809828 | 1.560079e-50 | -8.615850e-47 |
| Msa0349470 | Msa0878220 | 0.816419 | 5.584151e-52 | -8.615850e-47 |
| Msa0349470 | Msa0944020 | 0.803118 | 4.060681e-49 | -8.615850e-47 |
| Msa0349470 | Msa1137780 | 0.805495 | 1.298953e-49 | -8.615850e-47 |
| Msa0349470 | Msa1159160 | 0.814510 | 1.485376e-51 | -8.615850e-47 |
| Msa0349470 | Msa1173340 | 0.806602 | 7.597496e-50 | -8.615850e-47 |
| Msa0349470 | Msa1214750 | 0.820276 | 7.473469e-53 | -8.615850e-47 |
| Msa0349470 | Msa1217420 | 0.831024 | 2.110387e-55 | -8.615850e-47 |
| Msa0349470 | Msa1236440 | 0.825531 | 4.455172e-54 | -8.615850e-47 |
| Msa0349470 | Msa1277670 | 0.832934 | 7.118598e-56 | -8.615850e-47 |
| Msa0349470 | Msa1340200 | 0.824531 | 7.672945e-54 | -8.615850e-47 |
| Msa0349470 | Msa1341300 | 0.824124 | 9.564545e-54 | -8.615850e-47 |
| Msa0349470 | Msa1346840 | 0.800795 | 1.218514e-48 | -8.615850e-47 |
| Msa0349470 | Msa1363820 | -0.848063 | 7.781303e-60 | -8.615850e-47 |
| Msa0349470 | Msa1452710 | 0.809486 | 1.848054e-50 | -8.615850e-47 |
| Msa0349470 | Msa1464090 | 0.821499 | 3.909351e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349470 | MtrunA17_Chr3g0113281 | 96.975 | 628 | 15 | 2 | 1 | 626 | 1 | 626 | 0.0 | 1253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349470 | AT5G05700.1 | 52.000 | 650 | 260 | 11 | 6 | 625 | 4 | 631 | 0.0 | 624 |
| Msa0349470 | AT3G11240.1 | 51.962 | 637 | 261 | 11 | 1 | 625 | 1 | 604 | 0.0 | 603 |
| Msa0349470 | AT3G11240.3 | 51.613 | 589 | 245 | 9 | 44 | 625 | 6 | 561 | 0.0 | 558 |
| Msa0349470 | AT5G05700.2 | 50.692 | 578 | 236 | 10 | 75 | 625 | 1 | 556 | 0.0 | 530 |
| Msa0349470 | AT3G11240.4 | 50.855 | 468 | 198 | 7 | 164 | 625 | 4 | 445 | 1.36e-149 | 440 |
| Msa0349470 | AT3G11240.2 | 50.855 | 468 | 198 | 7 | 164 | 625 | 4 | 445 | 1.36e-149 | 440 |
| Msa0349470 | AT3G11240.5 | 50.855 | 468 | 198 | 7 | 164 | 625 | 4 | 445 | 1.36e-149 | 440 |
Find 159 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAATTGTTTGAAGTATT+TGG | 0.169517 | 3_1:+13049492 | None:intergenic |
| GATTCAACAGTGAACATTTC+TGG | 0.176607 | 3_1:-13049075 | Msa0349470:CDS |
| TACTCTGCTCTTCAAGAAAT+TGG | 0.199151 | 3_1:-13048595 | Msa0349470:CDS |
| TTCTTGTGCATTTGCATATA+CGG | 0.212102 | 3_1:-13047013 | Msa0349470:three_prime_UTR |
| ACTCGACATTCTTCAATTTC+GGG | 0.215652 | 3_1:+13052714 | None:intergenic |
| CCAGCATTAGTTGCTGAATA+TGG | 0.218419 | 3_1:-13046962 | Msa0349470:three_prime_UTR |
| TTCAGAAGAGATGAAAATTT+AGG | 0.221231 | 3_1:+13052737 | None:intergenic |
| ATATACGGAATTTAATTTAA+TGG | 0.222822 | 3_1:-13046998 | Msa0349470:three_prime_UTR |
| CTATATAAAGCATATTCTTC+TGG | 0.228134 | 3_1:+13048883 | None:intergenic |
| TACTCGACATTCTTCAATTT+CGG | 0.228850 | 3_1:+13052713 | None:intergenic |
| CGATTCGTTGCAGACTTCTT+TGG | 0.247968 | 3_1:+13048961 | None:intergenic |
| TCCTTCTCACTATCTCTTGA+TGG | 0.258555 | 3_1:+13049147 | None:intergenic |
| ACAGTTCCTCCTTGTGGTTT+TGG | 0.260938 | 3_1:-13048748 | Msa0349470:CDS |
| TATCGAGTAAATATTTGTTC+TGG | 0.263562 | 3_1:-13048651 | Msa0349470:CDS |
| CAGCAACAACGCTTTCCTTT+GGG | 0.269424 | 3_1:+13052659 | None:intergenic |
| TTTGAAGTAGTTTCTATATC+AGG | 0.274161 | 3_1:+13047889 | None:intergenic |
| ACATTTCTGGTCTGTCTATC+AGG | 0.275790 | 3_1:-13049062 | Msa0349470:CDS |
| TCAGAAGAGATGAAAATTTA+GGG | 0.303811 | 3_1:+13052738 | None:intergenic |
| AAGTGACTTTGTTCCCTCTA+AGG | 0.312760 | 3_1:-13050748 | Msa0349470:CDS |
| TCAAATGGTGAACCAGAAAA+TGG | 0.316117 | 3_1:-13047871 | Msa0349470:CDS |
| GGGATTGTTCGATCTTTGAT+TGG | 0.329373 | 3_1:+13052758 | None:intergenic |
| GTATGTGAAACATATATTAA+TGG | 0.338861 | 3_1:+13048781 | None:intergenic |
| AAGGATCTGCAAAGTGTATT+TGG | 0.341290 | 3_1:-13047327 | Msa0349470:CDS |
| TTTCCATCAACAGTATTTAG+TGG | 0.347193 | 3_1:-13048722 | Msa0349470:CDS |
| TCGGACTTAAATATTGATAT+AGG | 0.347773 | 3_1:+13052925 | None:intergenic |
| ACCATTCTGACTGAAGCTTT+TGG | 0.357966 | 3_1:+13049300 | None:intergenic |
| CCTTGTCCCTTGACTTTGCT+CGG | 0.359889 | 3_1:+13049187 | None:intergenic |
| TCAGCAACAACGCTTTCCTT+TGG | 0.361381 | 3_1:+13052658 | None:intergenic |
| TTCTGTTAGCTCTTCTTGAT+CGG | 0.362879 | 3_1:-13050854 | Msa0349470:intron |
| CATCCACTAAATACTGTTGA+TGG | 0.367065 | 3_1:+13048719 | None:intergenic |
| TTAATATATGTTTCACATAC+TGG | 0.367295 | 3_1:-13048778 | Msa0349470:CDS |
| TCTGTTAGCTCTTCTTGATC+GGG | 0.371855 | 3_1:-13050853 | Msa0349470:intron |
| TACACGAAGTTGTTCCTTAG+AGG | 0.382550 | 3_1:+13050734 | None:intergenic |
| ATCGAGTAAATATTTGTTCT+GGG | 0.383663 | 3_1:-13048650 | Msa0349470:CDS |
| TCTGCAACGAATCGTAATAT+TGG | 0.392297 | 3_1:-13048952 | Msa0349470:CDS |
| AGAAATGGTTGAATCTGAAT+TGG | 0.392690 | 3_1:-13047929 | Msa0349470:CDS |
| ATGGTAAATTAGTGGCAGTT+GGG | 0.392810 | 3_1:-13048699 | Msa0349470:CDS |
| CAGCTCCAGCTGCTGGATAC+AGG | 0.400677 | 3_1:+13047147 | None:intergenic |
| TAGCTCTTCTTGATCGGGGC+TGG | 0.413747 | 3_1:-13050848 | Msa0349470:CDS |
| ATATTCTTCTGGATCAAAAC+TGG | 0.414826 | 3_1:+13048894 | None:intergenic |
| TGCACATGTTCACTGAGAAC+GGG | 0.420815 | 3_1:-13049347 | Msa0349470:CDS |
| GGATACAGGATCTTATTTGC+TGG | 0.421600 | 3_1:+13047161 | None:intergenic |
| TCATCTTCATCTTCATGCAT+TGG | 0.426710 | 3_1:+13047964 | None:intergenic |
| TGCCATTCCTAGAGACAAAT+GGG | 0.431593 | 3_1:+13047115 | None:intergenic |
| TTTGATCCCCATTTGTCTCT+AGG | 0.433714 | 3_1:-13047122 | Msa0349470:three_prime_UTR |
| AGAGATAGTGAGAAGGAGAA+TGG | 0.437181 | 3_1:-13049141 | Msa0349470:CDS |
| GATCGGGGCTGGAGAAGATC+TGG | 0.437268 | 3_1:-13050837 | Msa0349470:CDS |
| TATTTACTCGATAAACAGTT+AGG | 0.441413 | 3_1:+13048661 | None:intergenic |
| GTACTGGAGACTAGGACAAT+AGG | 0.443698 | 3_1:+13048552 | None:intergenic |
| TGCTCTTCAAGAAATTGGTT+GGG | 0.445508 | 3_1:-13048590 | Msa0349470:CDS |
| GAACCATGAGAGATGCTATT+GGG | 0.446557 | 3_1:+13052589 | None:intergenic |
| ACTGAACAATGAATTGAAAT+CGG | 0.447578 | 3_1:-13052789 | Msa0349470:five_prime_UTR |
| GATACAGGATCTTATTTGCT+GGG | 0.448971 | 3_1:+13047162 | None:intergenic |
| TTTAGTGGATGGTAAATTAG+TGG | 0.451470 | 3_1:-13048707 | Msa0349470:CDS |
| TGAAGATGAAGATGAAGAAA+TGG | 0.451588 | 3_1:-13047944 | Msa0349470:CDS |
| TCAAATTCAGCTCCAGCTGC+TGG | 0.453356 | 3_1:+13047140 | None:intergenic |
| TGCTTTCAAGCGGATTGTAT+AGG | 0.453379 | 3_1:+13050770 | None:intergenic |
| GGATTGTTCGATCTTTGATT+GGG | 0.453607 | 3_1:+13052759 | None:intergenic |
| GATATAGAAACTACTTCAAA+TGG | 0.453880 | 3_1:-13047886 | Msa0349470:CDS |
| ACCAAAAGCTTCAGTCAGAA+TGG | 0.453937 | 3_1:-13049301 | Msa0349470:CDS |
| AGTCTCCAGTACTATTATCT+TGG | 0.457037 | 3_1:-13048541 | Msa0349470:CDS |
| ATGCCATTCCTAGAGACAAA+TGG | 0.457435 | 3_1:+13047114 | None:intergenic |
| TGAACCATGAGAGATGCTAT+TGG | 0.459034 | 3_1:+13052588 | None:intergenic |
| TTTCTTTGTTACAGGCATGC+TGG | 0.460312 | 3_1:-13052303 | Msa0349470:intron |
| AGTGATAGAAAGGCAAAGTC+TGG | 0.460759 | 3_1:+13048625 | None:intergenic |
| CTGCTCTTCAAGAAATTGGT+TGG | 0.462545 | 3_1:-13048591 | Msa0349470:CDS |
| TGGAGCATGATGGGTTGTTA+TGG | 0.468006 | 3_1:+13049460 | None:intergenic |
| ATAGAACATAAAATTGATTG+AGG | 0.477237 | 3_1:+13046878 | None:intergenic |
| TTCAGTCAGAATGGTTTCAC+AGG | 0.478971 | 3_1:-13049292 | Msa0349470:CDS |
| GATTGTATAGGAAGGGCAAC+AGG | 0.478971 | 3_1:+13050782 | None:intergenic |
| GGGTTTCATTTGACATTGCA+AGG | 0.480080 | 3_1:-13048134 | Msa0349470:CDS |
| CATCAACAGTATTTAGTGGA+TGG | 0.481200 | 3_1:-13048718 | Msa0349470:CDS |
| TAAAACTATTGCAGAAAAGC+TGG | 0.482141 | 3_1:-13049109 | Msa0349470:CDS |
| CAGAAATACAGGAGGGTTGT+CGG | 0.488102 | 3_1:-13047270 | Msa0349470:CDS |
| CATTTCTGGTCTGTCTATCA+GGG | 0.490558 | 3_1:-13049061 | Msa0349470:CDS |
| TGATCTTCAGCAACTTGAAG+TGG | 0.497795 | 3_1:+13048042 | None:intergenic |
| AGTAGCCAAGATAATAGTAC+TGG | 0.499159 | 3_1:+13048536 | None:intergenic |
| TGAAGTATTTGGTTCCTCCA+TGG | 0.500622 | 3_1:+13049503 | None:intergenic |
| AGTCACAGTTGCAGAAATAC+AGG | 0.501911 | 3_1:-13047281 | Msa0349470:CDS |
| AAGATCCTGTATCCAGCAGC+TGG | 0.502219 | 3_1:-13047152 | Msa0349470:three_prime_UTR |
| GATGGTAAATTAGTGGCAGT+TGG | 0.505487 | 3_1:-13048700 | Msa0349470:CDS |
| CCATATTCAGCAACTAATGC+TGG | 0.513454 | 3_1:+13046962 | None:intergenic |
| GATCTTCAGCAACTTGAAGT+GGG | 0.518193 | 3_1:+13048043 | None:intergenic |
| TCTTCTGACATGGAGCATGA+TGG | 0.520063 | 3_1:+13049450 | None:intergenic |
| TCGTGAGCAGCAGAGATACT+TGG | 0.521603 | 3_1:-13047304 | Msa0349470:CDS |
| GTACTTGCCTAGTGATAGAA+AGG | 0.522687 | 3_1:+13048615 | None:intergenic |
| AAAAGAAGGTATTAGCCAAT+GGG | 0.524221 | 3_1:-13049266 | Msa0349470:CDS |
| TATAGATGCAGCAACTTGAA+AGG | 0.525347 | 3_1:+13049212 | None:intergenic |
| TCCCCATTTGTCTCTAGGAA+TGG | 0.525816 | 3_1:-13047117 | Msa0349470:three_prime_UTR |
| GCTACTATATAAGAGGTCTT+CGG | 0.526478 | 3_1:+13049242 | None:intergenic |
| CTTGACCACTGTCATCAACC+TGG | 0.528218 | 3_1:+13048004 | None:intergenic |
| CTTCTGACATGGAGCATGAT+GGG | 0.528703 | 3_1:+13049451 | None:intergenic |
| TTTGGTAATTGAATACCAGA+TGG | 0.531867 | 3_1:+13049318 | None:intergenic |
| CTATATTGCTACTATATAAG+AGG | 0.536144 | 3_1:+13049235 | None:intergenic |
| AGAGGACATAGTAGCTCTGA+AGG | 0.537283 | 3_1:+13048469 | None:intergenic |
| TCTATCTGTTAGCAATAAAG+AGG | 0.539337 | 3_1:-13049424 | Msa0349470:CDS |
| TAAGAGGTCTTCGGACCCAT+TGG | 0.540930 | 3_1:+13049251 | None:intergenic |
| TCAAGACACTATGTTAAGCC+AGG | 0.546489 | 3_1:-13048022 | Msa0349470:CDS |
| TGGTTGGGTGAAAGATAACC+AGG | 0.546626 | 3_1:-13048575 | Msa0349470:CDS |
| TGGTAAATTAGTGGCAGTTG+GGG | 0.548028 | 3_1:-13048698 | Msa0349470:CDS |
| CAAAGTCACTTGCTTTCAAG+CGG | 0.550013 | 3_1:+13050760 | None:intergenic |
| GAGCGAATGGTCTACTCTCT+CGG | 0.557386 | 3_1:-13047234 | Msa0349470:CDS |
| TTCAAGCGGATTGTATAGGA+AGG | 0.557510 | 3_1:+13050774 | None:intergenic |
| GCAACGAATCGTAATATTGG+AGG | 0.558170 | 3_1:-13048949 | Msa0349470:CDS |
| ACACAGAAAGCTCATATCGC+AGG | 0.558720 | 3_1:-13048819 | Msa0349470:CDS |
| CACTGCATTATCAATCTGAT+CGG | 0.558763 | 3_1:+13049368 | None:intergenic |
| GAGAACGGGGAATTTCCATC+TGG | 0.560903 | 3_1:-13049333 | Msa0349470:CDS |
| GTGCACATGTTCACTGAGAA+CGG | 0.561725 | 3_1:-13049348 | Msa0349470:CDS |
| CTGTCTATCAGGGCTTGCAA+TGG | 0.562657 | 3_1:-13049051 | Msa0349470:CDS |
| TCTTAGTTGAAGCATCAAGT+TGG | 0.565198 | 3_1:-13046917 | Msa0349470:three_prime_UTR |
| TCCAGTGTTATCCGAGCGAA+TGG | 0.566865 | 3_1:-13047247 | Msa0349470:CDS |
| ACACGAAGTTGTTCCTTAGA+GGG | 0.574435 | 3_1:+13050735 | None:intergenic |
| AGATAATAGTACTGGAGACT+AGG | 0.577677 | 3_1:+13048544 | None:intergenic |
| CATGCTGGCATATAGCCTTA+CGG | 0.578182 | 3_1:-13052288 | Msa0349470:CDS |
| CTGTTAGCTCTTCTTGATCG+GGG | 0.579685 | 3_1:-13050852 | Msa0349470:intron |
| GGAAAGCGTCGAAGCTCTTG+TGG | 0.580414 | 3_1:-13052631 | Msa0349470:CDS |
| GACTTTGCCTTTCTATCACT+AGG | 0.581918 | 3_1:-13048622 | Msa0349470:CDS |
| AGCAACAACGCTTTCCTTTG+GGG | 0.582980 | 3_1:+13052660 | None:intergenic |
| CTATAAACCGAGCAAAGTCA+AGG | 0.583219 | 3_1:-13049194 | Msa0349470:CDS |
| GAAAGCGTTGTTGCTGATTG+CGG | 0.585631 | 3_1:-13052652 | Msa0349470:CDS |
| GGAGACTAGGACAATAGGCC+TGG | 0.586272 | 3_1:+13048557 | None:intergenic |
| TCTCTCGGTTAATTATATCT+CGG | 0.586725 | 3_1:-13047219 | Msa0349470:exon |
| CTTGGTAGTCATACACCGTA+AGG | 0.588665 | 3_1:+13052273 | None:intergenic |
| ATCTGTTAGCAATAAAGAGG+TGG | 0.589633 | 3_1:-13049421 | Msa0349470:CDS |
| CCGAGCAAAGTCAAGGGACA+AGG | 0.590380 | 3_1:-13049187 | Msa0349470:CDS |
| ACCATCAAGAGATAGTGAGA+AGG | 0.595095 | 3_1:-13049148 | Msa0349470:CDS |
| GATAACACAGTTCCTCCTTG+TGG | 0.595810 | 3_1:-13048754 | Msa0349470:CDS |
| CGTCCCAATAGCATCTCTCA+TGG | 0.596130 | 3_1:-13052592 | Msa0349470:intron |
| GGGATCCCGTGTGAGATACA+AGG | 0.598121 | 3_1:-13047818 | Msa0349470:intron |
| AGATAGAGATTCTTCTGACA+TGG | 0.604313 | 3_1:+13049440 | None:intergenic |
| ATCTTCAGCAACTTGAAGTG+GGG | 0.605213 | 3_1:+13048044 | None:intergenic |
| ATCATACCTTGTATCTCACA+CGG | 0.611139 | 3_1:+13047812 | None:intergenic |
| ATGATGGGTTGTTATGGACA+AGG | 0.611276 | 3_1:+13049466 | None:intergenic |
| TGAGAGATGCTATTGGGACG+AGG | 0.618053 | 3_1:+13052595 | None:intergenic |
| TCAGTCAGAATGGTTTCACA+GGG | 0.619527 | 3_1:-13049291 | Msa0349470:CDS |
| TAACGCTTTCTGTCAAGCAA+AGG | 0.626789 | 3_1:+13048111 | None:intergenic |
| ACCATTCGCTCGGATAACAC+TGG | 0.627386 | 3_1:+13047246 | None:intergenic |
| GCAAAGTCAAGGGACAAGGA+TGG | 0.632318 | 3_1:-13049183 | Msa0349470:CDS |
| GAAGAATGTCGAGTACGAAG+AGG | 0.633268 | 3_1:-13052705 | Msa0349470:exon |
| TATAAACCGAGCAAAGTCAA+GGG | 0.634803 | 3_1:-13049193 | Msa0349470:CDS |
| CACAGTTGCAGAAATACAGG+AGG | 0.636902 | 3_1:-13047278 | Msa0349470:CDS |
| ATACAGGATCTTATTTGCTG+GGG | 0.638032 | 3_1:+13047163 | None:intergenic |
| TCAAGCGGATTGTATAGGAA+GGG | 0.647018 | 3_1:+13050775 | None:intergenic |
| TGGAAAGAGCCAAAACCACA+AGG | 0.651081 | 3_1:+13048739 | None:intergenic |
| TAGCAGTAGCAAAACCCCAA+AGG | 0.653048 | 3_1:-13052674 | Msa0349470:CDS |
| TTAACTTACTGATAGCGAAG+AGG | 0.662453 | 3_1:+13048451 | None:intergenic |
| GAGAGAGTAGACCATTCGCT+CGG | 0.668897 | 3_1:+13047236 | None:intergenic |
| TGTTAAAAGAGTTGATGCCA+TGG | 0.669144 | 3_1:-13049520 | Msa0349470:CDS |
| GTGTATCTAGACGAATGCAA+AGG | 0.675511 | 3_1:-13050716 | Msa0349470:intron |
| TAAAAGAGTTGATGCCATGG+AGG | 0.680258 | 3_1:-13049517 | Msa0349470:CDS |
| TCATACCTTGTATCTCACAC+GGG | 0.681061 | 3_1:+13047813 | None:intergenic |
| GAGGACATAGTAGCTCTGAA+GGG | 0.681722 | 3_1:+13048470 | None:intergenic |
| GCACATGTTCACTGAGAACG+GGG | 0.681833 | 3_1:-13049346 | Msa0349470:CDS |
| TTAAGCCAGGTTGATGACAG+TGG | 0.699199 | 3_1:-13048009 | Msa0349470:CDS |
| CTTACGGTGTATGACTACCA+AGG | 0.718339 | 3_1:-13052272 | Msa0349470:intron |
| GCCATTCCTAGAGACAAATG+GGG | 0.718410 | 3_1:+13047116 | None:intergenic |
| ACAGTTGCAGAAATACAGGA+GGG | 0.725694 | 3_1:-13047277 | Msa0349470:CDS |
| AAAGAGCCAAAACCACAAGG+AGG | 0.739577 | 3_1:+13048742 | None:intergenic |
| CAGTCAGAATGGTTTCACAG+GGG | 0.766259 | 3_1:-13049290 | Msa0349470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAAATATATATTTTAT+AGG | - | chr3_1:13048025-13048044 | Msa0349470:CDS | 0.0% |
| !! | TTAATTATAAATAAAAAAAA+TGG | + | chr3_1:13050021-13050040 | None:intergenic | 0.0% |
| !!! | TAAAATTCATGTTTTTTTTA+TGG | - | chr3_1:13048222-13048241 | Msa0349470:intron | 10.0% |
| !! | ATTATAAATAAAAAAAATGG+TGG | + | chr3_1:13050018-13050037 | None:intergenic | 10.0% |
| !! | TTGAAAAACAATAAATTTGT+CGG | + | chr3_1:13046914-13046933 | None:intergenic | 15.0% |
| !!! | TTTGAATTCTTTTCTTTTTT+TGG | + | chr3_1:13046998-13047017 | None:intergenic | 15.0% |
| !!! | AAACCAAAACTTTTTTTATT+GGG | + | chr3_1:13047328-13047347 | None:intergenic | 15.0% |
| !!! | AAAACCAAAACTTTTTTTAT+TGG | + | chr3_1:13047329-13047348 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGAATTTCTTAC+TGG | - | chr3_1:13047415-13047434 | Msa0349470:intron | 15.0% |
| !! | AAAAAAAAGAATTTCTTACT+GGG | - | chr3_1:13047416-13047435 | Msa0349470:intron | 15.0% |
| !!! | AAGTAATTATGATACTTTTA+TGG | + | chr3_1:13047999-13048018 | None:intergenic | 15.0% |
| !!! | ACTTTTGATTTTTAAATTGA+TGG | - | chr3_1:13049159-13049178 | Msa0349470:CDS | 15.0% |
| !! | ATGAAAATTGTAACATATAA+AGG | + | chr3_1:13049407-13049426 | None:intergenic | 15.0% |
| !!! | TTTTTGAATAGTAACATTTT+GGG | + | chr3_1:13050827-13050846 | None:intergenic | 15.0% |
| !!! | ATATACGGAATTTAATTTAA+TGG | - | chr3_1:13052819-13052838 | Msa0349470:five_prime_UTR | 15.0% |
| !!! | ATTCTTTTCTTTTTTTGGAA+TGG | + | chr3_1:13046993-13047012 | None:intergenic | 20.0% |
| !! | AAACAAATTCAACGAAATTA+GGG | + | chr3_1:13047273-13047292 | None:intergenic | 20.0% |
| !!! | AAACCCAATAAAAAAAGTTT+TGG | - | chr3_1:13047322-13047341 | Msa0349470:CDS | 20.0% |
| !!! | TTTCTTTTTTTCTTTGTTAC+AGG | - | chr3_1:13047506-13047525 | Msa0349470:intron | 20.0% |
| !! | TATAAAAAAAAGTTGAGACA+AGG | - | chr3_1:13048108-13048127 | Msa0349470:CDS | 20.0% |
| !!! | AAAAACATGAATTTTAAGTC+TGG | + | chr3_1:13048218-13048237 | None:intergenic | 20.0% |
| !!! | ACGTAAAGTTTTTGAAATTT+AGG | + | chr3_1:13048530-13048549 | None:intergenic | 20.0% |
| !!! | TGGAACTTTTATTTATAAAC+CGG | - | chr3_1:13049000-13049019 | Msa0349470:CDS | 20.0% |
| !!! | CTTTTTGAATAGTAACATTT+TGG | + | chr3_1:13050828-13050847 | None:intergenic | 20.0% |
| !! | GTATGTGAAACATATATTAA+TGG | + | chr3_1:13051039-13051058 | None:intergenic | 20.0% |
| !! | TTAATATATGTTTCACATAC+TGG | - | chr3_1:13051039-13051058 | Msa0349470:intron | 20.0% |
| !! | GTTAACATTATCTATTTCAT+AGG | + | chr3_1:13051529-13051548 | None:intergenic | 20.0% |
| !! | AAATAAAATATCGGTAAGTA+GGG | + | chr3_1:13052257-13052276 | None:intergenic | 20.0% |
| !!! | ATTATGTGAACTTAAGTTTT+TGG | - | chr3_1:13052737-13052756 | Msa0349470:five_prime_UTR | 20.0% |
| !! | ATAGAACATAAAATTGATTG+AGG | + | chr3_1:13052942-13052961 | None:intergenic | 20.0% |
| ! | TCGGACTTAAATATTGATAT+AGG | + | chr3_1:13046895-13046914 | None:intergenic | 25.0% |
| ! | ACTGAACAATGAATTGAAAT+CGG | - | chr3_1:13047028-13047047 | Msa0349470:three_prime_UTR | 25.0% |
| ! | TCAGAAGAGATGAAAATTTA+GGG | + | chr3_1:13047082-13047101 | None:intergenic | 25.0% |
| ! | TTCAGAAGAGATGAAAATTT+AGG | + | chr3_1:13047083-13047102 | None:intergenic | 25.0% |
| ! | AACAAATTCAACGAAATTAG+GGG | + | chr3_1:13047272-13047291 | None:intergenic | 25.0% |
| ! | CAAACAAATTCAACGAAATT+AGG | + | chr3_1:13047274-13047293 | None:intergenic | 25.0% |
| !! | AATTTCGTTGAATTTGTTTG+CGG | - | chr3_1:13047274-13047293 | Msa0349470:CDS | 25.0% |
| !!! | TTTTTAACTGAAACGTGAAT+TGG | - | chr3_1:13047345-13047364 | Msa0349470:intron | 25.0% |
| !!! | TTTTAACTGAAACGTGAATT+GGG | - | chr3_1:13047346-13047365 | Msa0349470:intron | 25.0% |
| !!! | CATGTTTTTTTTATGGATGA+TGG | - | chr3_1:13048229-13048248 | Msa0349470:intron | 25.0% |
| !!! | TTTTTTATGGATGATGGTAA+TGG | - | chr3_1:13048235-13048254 | Msa0349470:intron | 25.0% |
| !!! | TTTTTATGGATGATGGTAAT+GGG | - | chr3_1:13048236-13048255 | Msa0349470:intron | 25.0% |
| !! | TTTTGTTGATATCCTAACAT+AGG | - | chr3_1:13048318-13048337 | Msa0349470:intron | 25.0% |
| ! | TTTGTTGATATCCTAACATA+GGG | - | chr3_1:13048319-13048338 | Msa0349470:intron | 25.0% |
| !! | TAAGTAAAGATTCTTTGAAG+GGG | + | chr3_1:13048714-13048733 | None:intergenic | 25.0% |
| ! | CTAAGTAAAGATTCTTTGAA+GGG | + | chr3_1:13048715-13048734 | None:intergenic | 25.0% |
| ! | TCTAAGTAAAGATTCTTTGA+AGG | + | chr3_1:13048716-13048735 | None:intergenic | 25.0% |
| !!! | TTTTATTTATAAACCGGAGA+TGG | - | chr3_1:13049006-13049025 | Msa0349470:CDS | 25.0% |
| ! | CATCATTATAGACATGATAT+GGG | - | chr3_1:13049238-13049257 | Msa0349470:CDS | 25.0% |
| ! | GAGATAAATATGAATTCGAT+AGG | + | chr3_1:13049469-13049488 | None:intergenic | 25.0% |
| ! | TCAGTAAAAGAATAAACCTT+TGG | - | chr3_1:13049744-13049763 | Msa0349470:intron | 25.0% |
| ! | CAGTAAAAGAATAAACCTTT+GGG | - | chr3_1:13049745-13049764 | Msa0349470:intron | 25.0% |
| !!! | ACACTTTTTTCTATTTTCTC+TGG | - | chr3_1:13050043-13050062 | Msa0349470:intron | 25.0% |
| ! | TTCTTGCTAAAATAAAGGAA+AGG | + | chr3_1:13050122-13050141 | None:intergenic | 25.0% |
| ! | GAAAGTTCTTGCTAAAATAA+AGG | + | chr3_1:13050127-13050146 | None:intergenic | 25.0% |
| !!! | TATTTTAGCAAGAACTTTCA+AGG | - | chr3_1:13050128-13050147 | Msa0349470:intron | 25.0% |
| ! | TGAATTGCATATAATAGAAG+GGG | + | chr3_1:13050180-13050199 | None:intergenic | 25.0% |
| ! | GTGAATTGCATATAATAGAA+GGG | + | chr3_1:13050181-13050200 | None:intergenic | 25.0% |
| ! | AGTGAATTGCATATAATAGA+AGG | + | chr3_1:13050182-13050201 | None:intergenic | 25.0% |
| ! | AAACAAATTGGAACATTTAC+GGG | + | chr3_1:13050222-13050241 | None:intergenic | 25.0% |
| ! | CAAACAAATTGGAACATTTA+CGG | + | chr3_1:13050223-13050242 | None:intergenic | 25.0% |
| !! | TCTGAATTGTTTGAAGTATT+TGG | + | chr3_1:13050328-13050347 | None:intergenic | 25.0% |
| ! | CTATATTGCTACTATATAAG+AGG | + | chr3_1:13050585-13050604 | None:intergenic | 25.0% |
| ! | CTATATAAAGCATATTCTTC+TGG | + | chr3_1:13050937-13050956 | None:intergenic | 25.0% |
| ! | TATTTACTCGATAAACAGTT+AGG | + | chr3_1:13051159-13051178 | None:intergenic | 25.0% |
| ! | TATCGAGTAAATATTTGTTC+TGG | - | chr3_1:13051166-13051185 | Msa0349470:intron | 25.0% |
| ! | ATCGAGTAAATATTTGTTCT+GGG | - | chr3_1:13051167-13051186 | Msa0349470:intron | 25.0% |
| ! | AGAAGAAAAAAATCAAGCAA+CGG | + | chr3_1:13051601-13051620 | None:intergenic | 25.0% |
| !! | TTTGAAGTAGTTTCTATATC+AGG | + | chr3_1:13051931-13051950 | None:intergenic | 25.0% |
| ! | GATATAGAAACTACTTCAAA+TGG | - | chr3_1:13051931-13051950 | Msa0349470:intron | 25.0% |
| ! | GTATGAAAAGGAAGAAATAT+AGG | + | chr3_1:13052185-13052204 | None:intergenic | 25.0% |
| !!! | TTGTCTTGGTAATATCTTTT+CGG | + | chr3_1:13052217-13052236 | None:intergenic | 25.0% |
| !! | GAGAAATTACAATTTTGTCT+TGG | + | chr3_1:13052231-13052250 | None:intergenic | 25.0% |
| ! | AATAAAATATCGGTAAGTAG+GGG | + | chr3_1:13052256-13052275 | None:intergenic | 25.0% |
| ! | CAAATAAAATATCGGTAAGT+AGG | + | chr3_1:13052258-13052277 | None:intergenic | 25.0% |
| !! | CTACTTACCGATATTTTATT+TGG | - | chr3_1:13052256-13052275 | Msa0349470:intron | 25.0% |
| ! | GTTACCTCCAAATAAAATAT+CGG | + | chr3_1:13052266-13052285 | None:intergenic | 25.0% |
| !!! | ATATTTTATTTGGAGGTAAC+CGG | - | chr3_1:13052266-13052285 | Msa0349470:intron | 25.0% |
| !!! | TTAGTTTTTCCTTAAACACA+TGG | + | chr3_1:13052325-13052344 | None:intergenic | 25.0% |
| TACTCGACATTCTTCAATTT+CGG | + | chr3_1:13047107-13047126 | None:intergenic | 30.0% | |
| !! | AATTGGGTTTTTGTTGTAGT+TGG | - | chr3_1:13047362-13047381 | Msa0349470:intron | 30.0% |
| TGTTTGGATTGTTGTGTTAT+AGG | - | chr3_1:13047440-13047459 | Msa0349470:intron | 30.0% | |
| TTAGAAGCCTATAAAGAAGA+GGG | + | chr3_1:13047819-13047838 | None:intergenic | 30.0% | |
| ATTAGAAGCCTATAAAGAAG+AGG | + | chr3_1:13047820-13047839 | None:intergenic | 30.0% | |
| ATTTGCCAACAAACCATTAT+AGG | - | chr3_1:13047876-13047895 | Msa0349470:CDS | 30.0% | |
| ! | TATGGATACATCCCTATTTT+AGG | + | chr3_1:13047920-13047939 | None:intergenic | 30.0% |
| AAATAGGGATGTATCCATAT+AGG | - | chr3_1:13047921-13047940 | Msa0349470:CDS | 30.0% | |
| GCTTAATAACTAGATTAGCA+TGG | - | chr3_1:13048645-13048664 | Msa0349470:CDS | 30.0% | |
| ! | AAGTAAAGATTCTTTGAAGG+GGG | + | chr3_1:13048713-13048732 | None:intergenic | 30.0% |
| TAAGCCTTCTCTATTTAAAG+AGG | + | chr3_1:13048753-13048772 | None:intergenic | 30.0% | |
| AAGGCTTATCTCATCTAAAA+AGG | - | chr3_1:13048765-13048784 | Msa0349470:CDS | 30.0% | |
| AGGCTTATCTCATCTAAAAA+GGG | - | chr3_1:13048766-13048785 | Msa0349470:CDS | 30.0% | |
| ATCAGCAAATCAATTTAGCT+TGG | + | chr3_1:13048907-13048926 | None:intergenic | 30.0% | |
| !! | TGATTTGCTGATATGACTTT+CGG | - | chr3_1:13048915-13048934 | Msa0349470:CDS | 30.0% |
| ! | TTCAAGTTCAAAAGCTTTGT+TGG | - | chr3_1:13049215-13049234 | Msa0349470:CDS | 30.0% |
| GCATCATTATAGACATGATA+TGG | - | chr3_1:13049237-13049256 | Msa0349470:CDS | 30.0% | |
| TTATATCAGTCAAATGAGTG+AGG | + | chr3_1:13049299-13049318 | None:intergenic | 30.0% | |
| ACATATAAAGGAAACTCTGA+AGG | + | chr3_1:13049395-13049414 | None:intergenic | 30.0% | |
| ! | TGTTACAATTTTCATTCTCC+CGG | - | chr3_1:13049412-13049431 | Msa0349470:CDS | 30.0% |
| !!! | AGCAACACTTTCTTTTTTAC+TGG | - | chr3_1:13049809-13049828 | Msa0349470:intron | 30.0% |
| TATTCAACTCGTATTCCAAA+AGG | + | chr3_1:13049963-13049982 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCTATTTTCTCTGG+AGG | - | chr3_1:13050046-13050065 | Msa0349470:intron | 30.0% |
| TGCATCAATGTATTACCATA+AGG | - | chr3_1:13050086-13050105 | Msa0349470:intron | 30.0% | |
| TTTCAAGGAGGTTAAATACA+CGG | - | chr3_1:13050143-13050162 | Msa0349470:intron | 30.0% | |
| AATTGCATATAATAGAAGGG+GGG | + | chr3_1:13050178-13050197 | None:intergenic | 30.0% | |
| GAATTGCATATAATAGAAGG+GGG | + | chr3_1:13050179-13050198 | None:intergenic | 30.0% | |
| GAAAAGTGGAACAAACAAAT+TGG | + | chr3_1:13050234-13050253 | None:intergenic | 30.0% | |
| !! | TTTCTTCCTAGGTTTTTAGA+TGG | - | chr3_1:13050265-13050284 | Msa0349470:intron | 30.0% |
| ! | ATCAACTCTTTTAACATCCA+AGG | + | chr3_1:13050293-13050312 | None:intergenic | 30.0% |
| TCTATCTGTTAGCAATAAAG+AGG | - | chr3_1:13050393-13050412 | Msa0349470:intron | 30.0% | |
| ! | TTTGGTAATTGAATACCAGA+TGG | + | chr3_1:13050502-13050521 | None:intergenic | 30.0% |
| !! | AAAAAGAAGGTATTAGCCAA+TGG | - | chr3_1:13050550-13050569 | Msa0349470:intron | 30.0% |
| !! | AAAAGAAGGTATTAGCCAAT+GGG | - | chr3_1:13050551-13050570 | Msa0349470:intron | 30.0% |
| ! | AGCTTTTCTGCAATAGTTTT+AGG | + | chr3_1:13050709-13050728 | None:intergenic | 30.0% |
| TAAAACTATTGCAGAAAAGC+TGG | - | chr3_1:13050708-13050727 | Msa0349470:intron | 30.0% | |
| ATATTCTTCTGGATCAAAAC+TGG | + | chr3_1:13050926-13050945 | None:intergenic | 30.0% | |
| TTTCCATCAACAGTATTTAG+TGG | - | chr3_1:13051095-13051114 | Msa0349470:intron | 30.0% | |
| ! | TTTAGTGGATGGTAAATTAG+TGG | - | chr3_1:13051110-13051129 | Msa0349470:intron | 30.0% |
| ! | TTTTGGATAAACTACAAGCA+TGG | + | chr3_1:13051426-13051445 | None:intergenic | 30.0% |
| ! | ACGTTTATGCACAAAGTTTT+TGG | + | chr3_1:13051443-13051462 | None:intergenic | 30.0% |
| TATAGTAGAAGACTATGAAG+AGG | + | chr3_1:13051561-13051580 | None:intergenic | 30.0% | |
| TTTCACATAATATAGGAGGT+GGG | + | chr3_1:13051629-13051648 | None:intergenic | 30.0% | |
| CTTGTTTCACATAATATAGG+AGG | + | chr3_1:13051633-13051652 | None:intergenic | 30.0% | |
| CTCCTATATTATGTGAAACA+AGG | - | chr3_1:13051631-13051650 | Msa0349470:intron | 30.0% | |
| !! | AGCCTTGTTTCACATAATAT+AGG | + | chr3_1:13051636-13051655 | None:intergenic | 30.0% |
| ! | GATGCTTCCATTTTACAAAA+TGG | - | chr3_1:13051742-13051761 | Msa0349470:intron | 30.0% |
| ! | TGACTCTCCATTTTGTAAAA+TGG | + | chr3_1:13051752-13051771 | None:intergenic | 30.0% |
| AGAAATGGTTGAATCTGAAT+TGG | - | chr3_1:13051888-13051907 | Msa0349470:intron | 30.0% | |
| ! | ATTTCAGCAAAGTTTTGCTA+GGG | - | chr3_1:13051971-13051990 | Msa0349470:intron | 30.0% |
| ! | AAAGTTTTGCTAGGGATAAA+GGG | - | chr3_1:13051979-13051998 | Msa0349470:intron | 30.0% |
| !! | CAACTAACATTTTCTAAGGA+TGG | + | chr3_1:13052083-13052102 | None:intergenic | 30.0% |
| ! | TTCGCAACTAACATTTTCTA+AGG | + | chr3_1:13052087-13052106 | None:intergenic | 30.0% |
| TGTTAGTTGCGAAAAATTGT+AGG | - | chr3_1:13052094-13052113 | Msa0349470:intron | 30.0% | |
| ATAGCGAGTATGTTTCAAAA+TGG | - | chr3_1:13052135-13052154 | Msa0349470:intron | 30.0% | |
| !! | TGTCTTGGTAATATCTTTTC+GGG | + | chr3_1:13052216-13052235 | None:intergenic | 30.0% |
| !! | CTTACCGATATTTTATTTGG+AGG | - | chr3_1:13052259-13052278 | Msa0349470:intron | 30.0% |
| !!! | CAACATGACTAGTTTTACAT+TGG | + | chr3_1:13052352-13052371 | None:intergenic | 30.0% |
| ATGATTTATTTGTCCCATTC+TGG | - | chr3_1:13052417-13052436 | Msa0349470:intron | 30.0% | |
| TCTCTCGGTTAATTATATCT+CGG | - | chr3_1:13052598-13052617 | Msa0349470:CDS | 30.0% | |
| !!! | GAACTTAAGTTTTTGGTCAA+TGG | - | chr3_1:13052744-13052763 | Msa0349470:five_prime_UTR | 30.0% |
| TTCTTGTGCATTTGCATATA+CGG | - | chr3_1:13052804-13052823 | Msa0349470:five_prime_UTR | 30.0% | |
| GGATTGTTCGATCTTTGATT+GGG | + | chr3_1:13047061-13047080 | None:intergenic | 35.0% | |
| ACTCGACATTCTTCAATTTC+GGG | + | chr3_1:13047106-13047125 | None:intergenic | 35.0% | |
| ATTAGGGGAATTGAAGAGAA+AGG | + | chr3_1:13047257-13047276 | None:intergenic | 35.0% | |
| GAATTTCTTACTGGGTTGTT+TGG | - | chr3_1:13047424-13047443 | Msa0349470:intron | 35.0% | |
| TGTTTGACATTCTTTGTGCT+TGG | - | chr3_1:13047575-13047594 | Msa0349470:intron | 35.0% | |
| TGTGTTGTACCTATATGACA+TGG | - | chr3_1:13047710-13047729 | Msa0349470:intron | 35.0% | |
| TGTACCTATATGACATGGTT+TGG | - | chr3_1:13047715-13047734 | Msa0349470:intron | 35.0% | |
| AGTTCCAAACCATGTCATAT+AGG | + | chr3_1:13047722-13047741 | None:intergenic | 35.0% | |
| TCATCACTTCAGTGTCAAAA+AGG | + | chr3_1:13047774-13047793 | None:intergenic | 35.0% | |
| TAGAAGCCTATAAAGAAGAG+GGG | + | chr3_1:13047818-13047837 | None:intergenic | 35.0% | |
| TCCAAATGTGCTTATGCTTT+CGG | - | chr3_1:13047849-13047868 | Msa0349470:CDS | 35.0% | |
| !!! | TCCCTATTTTAGGAGTATCT+GGG | + | chr3_1:13047910-13047929 | None:intergenic | 35.0% |
| !!! | ATCCCTATTTTAGGAGTATC+TGG | + | chr3_1:13047911-13047930 | None:intergenic | 35.0% |
| TATCCATATAGGATACGTGT+TGG | - | chr3_1:13047932-13047951 | Msa0349470:CDS | 35.0% | |
| ! | TACTACATATCCGAGAGTAT+TGG | + | chr3_1:13047972-13047991 | None:intergenic | 35.0% |
| ACAAGGTTGTGATAATTCAG+TGG | - | chr3_1:13048125-13048144 | Msa0349470:CDS | 35.0% | |
| TTGATATCCTAACATAGGGA+TGG | - | chr3_1:13048323-13048342 | Msa0349470:intron | 35.0% | |
| ACTTTACGTATCAGTGTATC+CGG | - | chr3_1:13048541-13048560 | Msa0349470:CDS | 35.0% | |
| TCTAGTTATTAAGCCTGACT+CGG | + | chr3_1:13048639-13048658 | None:intergenic | 35.0% | |
| ACTAGTTCATTGTTCATTGG+AGG | + | chr3_1:13048679-13048698 | None:intergenic | 35.0% | |
| GGTACTAGTTCATTGTTCAT+TGG | + | chr3_1:13048682-13048701 | None:intergenic | 35.0% | |
| ! | AGTAAAGATTCTTTGAAGGG+GGG | + | chr3_1:13048712-13048731 | None:intergenic | 35.0% |
| CTTCTCTATTTAAAGAGGTC+GGG | + | chr3_1:13048748-13048767 | None:intergenic | 35.0% | |
| CCTTCTCTATTTAAAGAGGT+CGG | + | chr3_1:13048749-13048768 | None:intergenic | 35.0% | |
| GGCTTATCTCATCTAAAAAG+GGG | - | chr3_1:13048767-13048786 | Msa0349470:CDS | 35.0% | |
| TAATAACTAGGATCGCAACA+GGG | + | chr3_1:13048828-13048847 | None:intergenic | 35.0% | |
| TTAATAACTAGGATCGCAAC+AGG | + | chr3_1:13048829-13048848 | None:intergenic | 35.0% | |
| TTGCGATCCTAGTTATTAAC+AGG | - | chr3_1:13048830-13048849 | Msa0349470:CDS | 35.0% | |
| TACTGCTCCTGTTAATAACT+AGG | + | chr3_1:13048840-13048859 | None:intergenic | 35.0% | |
| ! | TTCTGTTAGCTCTTCTTGAT+CGG | - | chr3_1:13048963-13048982 | Msa0349470:CDS | 35.0% |
| ATTACGTATCAGTGAGAAAG+AGG | + | chr3_1:13049333-13049352 | None:intergenic | 35.0% | |
| ! | AGCATAAGCATCTAAGATTC+CGG | + | chr3_1:13049434-13049453 | None:intergenic | 35.0% |
| CTTGCTAGTTGTTATACACA+AGG | - | chr3_1:13049687-13049706 | Msa0349470:intron | 35.0% | |
| AAATCAAATCACCATTCACC+AGG | + | chr3_1:13049784-13049803 | None:intergenic | 35.0% | |
| !! | TTTTCTATTTTCTCTGGAGG+TGG | - | chr3_1:13050049-13050068 | Msa0349470:intron | 35.0% |
| !! | TTTCTATTTTCTCTGGAGGT+GGG | - | chr3_1:13050050-13050069 | Msa0349470:intron | 35.0% |
| TTTAGCAAGAACTTTCAAGG+AGG | - | chr3_1:13050131-13050150 | Msa0349470:intron | 35.0% | |
| TTCAAGGAGGTTAAATACAC+GGG | - | chr3_1:13050144-13050163 | Msa0349470:intron | 35.0% | |
| AAGGTTCCATCTAAAAACCT+AGG | + | chr3_1:13050274-13050293 | None:intergenic | 35.0% | |
| !! | TAGGTTTTTAGATGGAACCT+TGG | - | chr3_1:13050273-13050292 | Msa0349470:intron | 35.0% |
| !! | TGTTAAAAGAGTTGATGCCA+TGG | - | chr3_1:13050297-13050316 | Msa0349470:intron | 35.0% |
| AGATAGAGATTCTTCTGACA+TGG | + | chr3_1:13050380-13050399 | None:intergenic | 35.0% | |
| ATCTGTTAGCAATAAAGAGG+TGG | - | chr3_1:13050396-13050415 | Msa0349470:intron | 35.0% | |
| CACTGCATTATCAATCTGAT+CGG | + | chr3_1:13050452-13050471 | None:intergenic | 35.0% | |
| GCTACTATATAAGAGGTCTT+CGG | + | chr3_1:13050578-13050597 | None:intergenic | 35.0% | |
| TATAGATGCAGCAACTTGAA+AGG | + | chr3_1:13050608-13050627 | None:intergenic | 35.0% | |
| TATAAACCGAGCAAAGTCAA+GGG | - | chr3_1:13050624-13050643 | Msa0349470:intron | 35.0% | |
| GATTCAACAGTGAACATTTC+TGG | - | chr3_1:13050742-13050761 | Msa0349470:CDS | 35.0% | |
| TCTGCAACGAATCGTAATAT+TGG | - | chr3_1:13050865-13050884 | Msa0349470:intron | 35.0% | |
| ! | GAGCTTTCTGTGTAATTTTC+TGG | + | chr3_1:13050991-13051010 | None:intergenic | 35.0% |
| CATCCACTAAATACTGTTGA+TGG | + | chr3_1:13051101-13051120 | None:intergenic | 35.0% | |
| CATCAACAGTATTTAGTGGA+TGG | - | chr3_1:13051099-13051118 | Msa0349470:intron | 35.0% | |
| ATGGTAAATTAGTGGCAGTT+GGG | - | chr3_1:13051118-13051137 | Msa0349470:intron | 35.0% | |
| TACTCTGCTCTTCAAGAAAT+TGG | - | chr3_1:13051222-13051241 | Msa0349470:intron | 35.0% | |
| TGCTCTTCAAGAAATTGGTT+GGG | - | chr3_1:13051227-13051246 | Msa0349470:intron | 35.0% | |
| ! | AGATAATAGTACTGGAGACT+AGG | + | chr3_1:13051276-13051295 | None:intergenic | 35.0% |
| AGTCTCCAGTACTATTATCT+TGG | - | chr3_1:13051276-13051295 | Msa0349470:intron | 35.0% | |
| AGTAGCCAAGATAATAGTAC+TGG | + | chr3_1:13051284-13051303 | None:intergenic | 35.0% | |
| ! | TTAACTTACTGATAGCGAAG+AGG | + | chr3_1:13051369-13051388 | None:intergenic | 35.0% |
| ACTATATCAGCATGCTGTAT+AGG | - | chr3_1:13051575-13051594 | Msa0349470:intron | 35.0% | |
| GTTTCACATAATATAGGAGG+TGG | + | chr3_1:13051630-13051649 | None:intergenic | 35.0% | |
| AACATCAATGAATGATCTCC+AGG | - | chr3_1:13051659-13051678 | Msa0349470:intron | 35.0% | |
| TCAAATGGTGAACCAGAAAA+TGG | - | chr3_1:13051946-13051965 | Msa0349470:intron | 35.0% | |
| ! | GATTTCAGCAAAGTTTTGCT+AGG | - | chr3_1:13051970-13051989 | Msa0349470:intron | 35.0% |
| ! | CAAAGTTTTGCTAGGGATAA+AGG | - | chr3_1:13051978-13051997 | Msa0349470:intron | 35.0% |
| ATCATACCTTGTATCTCACA+CGG | + | chr3_1:13052008-13052027 | None:intergenic | 35.0% | |
| GTGAATTTCAGACATGTTGT+CGG | - | chr3_1:13052157-13052176 | Msa0349470:intron | 35.0% | |
| TAGTGATAGAGGAAAGAGTT+TGG | - | chr3_1:13052297-13052316 | Msa0349470:intron | 35.0% | |
| AGTTTGGATCCATGTGTTTA+AGG | - | chr3_1:13052313-13052332 | Msa0349470:intron | 35.0% | |
| ACTAGTCATGTTGCATGTTT+AGG | - | chr3_1:13052359-13052378 | Msa0349470:intron | 35.0% | |
| ATGGGACAAATAAATCATGC+AGG | + | chr3_1:13052415-13052434 | None:intergenic | 35.0% | |
| AAGGATCTGCAAAGTGTATT+TGG | - | chr3_1:13052490-13052509 | Msa0349470:intron | 35.0% | |
| ! | ATACAGGATCTTATTTGCTG+GGG | + | chr3_1:13052657-13052676 | None:intergenic | 35.0% |
| ! | GATACAGGATCTTATTTGCT+GGG | + | chr3_1:13052658-13052677 | None:intergenic | 35.0% |
| ! | TCTTAGTTGAAGCATCAAGT+TGG | - | chr3_1:13052900-13052919 | Msa0349470:five_prime_UTR | 35.0% |
| GGGATTGTTCGATCTTTGAT+TGG | + | chr3_1:13047062-13047081 | None:intergenic | 40.0% | |
| GAACCATGAGAGATGCTATT+GGG | + | chr3_1:13047231-13047250 | None:intergenic | 40.0% | |
| TGAACCATGAGAGATGCTAT+TGG | + | chr3_1:13047232-13047251 | None:intergenic | 40.0% | |
| !! | TGGGTTTTTGTTGTAGTTGG+TGG | - | chr3_1:13047365-13047384 | Msa0349470:intron | 40.0% |
| TTTCTTTGTTACAGGCATGC+TGG | - | chr3_1:13047514-13047533 | Msa0349470:intron | 40.0% | |
| ATGTCAAACAACACCAACCT+TGG | + | chr3_1:13047565-13047584 | None:intergenic | 40.0% | |
| TTCAGACCCCTCTTCTTTAT+AGG | - | chr3_1:13047809-13047828 | Msa0349470:intron | 40.0% | |
| ! | TCCGAAAGCATAAGCACATT+TGG | + | chr3_1:13047853-13047872 | None:intergenic | 40.0% |
| ! | CGTAGCCTATAATGGTTTGT+TGG | + | chr3_1:13047884-13047903 | None:intergenic | 40.0% |
| AGCCCAGATACTCCTAAAAT+AGG | - | chr3_1:13047905-13047924 | Msa0349470:CDS | 40.0% | |
| GCCCAGATACTCCTAAAATA+GGG | - | chr3_1:13047906-13047925 | Msa0349470:CDS | 40.0% | |
| TGTCCAACACGTATCCTATA+TGG | + | chr3_1:13047938-13047957 | None:intergenic | 40.0% | |
| CTATTCTCCATCCCTATGTT+AGG | + | chr3_1:13048333-13048352 | None:intergenic | 40.0% | |
| GGTGTGAAAGTAAAACGATC+CGG | + | chr3_1:13048563-13048582 | None:intergenic | 40.0% | |
| ! | GTAAAGATTCTTTGAAGGGG+GGG | + | chr3_1:13048711-13048730 | None:intergenic | 40.0% |
| TTTAAAGAGGTCGGGAGAAA+TGG | + | chr3_1:13048740-13048759 | None:intergenic | 40.0% | |
| CCGACCTCTTTAAATAGAGA+AGG | - | chr3_1:13048746-13048765 | Msa0349470:CDS | 40.0% | |
| AAAGGGGACTCATTATTCAC+TGG | - | chr3_1:13048783-13048802 | Msa0349470:CDS | 40.0% | |
| !! | CAACAGGGTTTTTGTTTCAG+TGG | + | chr3_1:13048813-13048832 | None:intergenic | 40.0% |
| ! | TCTGTTAGCTCTTCTTGATC+GGG | - | chr3_1:13048964-13048983 | Msa0349470:CDS | 40.0% |
| !!! | CAACAGGTTTTTTCCATCTC+CGG | + | chr3_1:13049022-13049041 | None:intergenic | 40.0% |
| !! | TCAAGCGGATTGTATAGGAA+GGG | + | chr3_1:13049045-13049064 | None:intergenic | 40.0% |
| !! | TTCAAGCGGATTGTATAGGA+AGG | + | chr3_1:13049046-13049065 | None:intergenic | 40.0% |
| !! | TGCTTTCAAGCGGATTGTAT+AGG | + | chr3_1:13049050-13049069 | None:intergenic | 40.0% |
| CAAAGTCACTTGCTTTCAAG+CGG | + | chr3_1:13049060-13049079 | None:intergenic | 40.0% | |
| AAGTGACTTTGTTCCCTCTA+AGG | - | chr3_1:13049069-13049088 | Msa0349470:CDS | 40.0% | |
| ACACGAAGTTGTTCCTTAGA+GGG | + | chr3_1:13049085-13049104 | None:intergenic | 40.0% | |
| TACACGAAGTTGTTCCTTAG+AGG | + | chr3_1:13049086-13049105 | None:intergenic | 40.0% | |
| GTGTATCTAGACGAATGCAA+AGG | - | chr3_1:13049101-13049120 | Msa0349470:CDS | 40.0% | |
| ATCAGTGAGAAAGAGGATGA+TGG | + | chr3_1:13049326-13049345 | None:intergenic | 40.0% | |
| ! | GCATAAGCATCTAAGATTCC+GGG | + | chr3_1:13049433-13049452 | None:intergenic | 40.0% |
| ! | GTATGTGAGTTGAGACTTGA+TGG | - | chr3_1:13049855-13049874 | Msa0349470:intron | 40.0% |
| AAGTCCTCACATAGTCACAT+GGG | - | chr3_1:13049916-13049935 | Msa0349470:intron | 40.0% | |
| ! | GACTCAAACTCACATCCTTT+TGG | - | chr3_1:13049945-13049964 | Msa0349470:intron | 40.0% |
| AAAGGAGAAGCAACACCTTA+TGG | + | chr3_1:13050104-13050123 | None:intergenic | 40.0% | |
| !! | TTTGTTCCACTTTTCACCGA+TGG | - | chr3_1:13050239-13050258 | Msa0349470:intron | 40.0% |
| AAAGAACCATCGGTGAAAAG+TGG | + | chr3_1:13050248-13050267 | None:intergenic | 40.0% | |
| ACCTAGGAAGAAAGAACCAT+CGG | + | chr3_1:13050258-13050277 | None:intergenic | 40.0% | |
| !! | TAAAAGAGTTGATGCCATGG+AGG | - | chr3_1:13050300-13050319 | Msa0349470:intron | 40.0% |
| ! | TGAAGTATTTGGTTCCTCCA+TGG | + | chr3_1:13050317-13050336 | None:intergenic | 40.0% |
| !! | ATGATGGGTTGTTATGGACA+AGG | + | chr3_1:13050354-13050373 | None:intergenic | 40.0% |
| ACCAAAAGCTTCAGTCAGAA+TGG | - | chr3_1:13050516-13050535 | Msa0349470:intron | 40.0% | |
| ! | ACCATTCTGACTGAAGCTTT+TGG | + | chr3_1:13050520-13050539 | None:intergenic | 40.0% |
| TTCAGTCAGAATGGTTTCAC+AGG | - | chr3_1:13050525-13050544 | Msa0349470:intron | 40.0% | |
| TCAGTCAGAATGGTTTCACA+GGG | - | chr3_1:13050526-13050545 | Msa0349470:intron | 40.0% | |
| CTATAAACCGAGCAAAGTCA+AGG | - | chr3_1:13050623-13050642 | Msa0349470:intron | 40.0% | |
| ACCATCAAGAGATAGTGAGA+AGG | - | chr3_1:13050669-13050688 | Msa0349470:intron | 40.0% | |
| TCCTTCTCACTATCTCTTGA+TGG | + | chr3_1:13050673-13050692 | None:intergenic | 40.0% | |
| AGAGATAGTGAGAAGGAGAA+TGG | - | chr3_1:13050676-13050695 | Msa0349470:intron | 40.0% | |
| !! | ACATTTCTGGTCTGTCTATC+AGG | - | chr3_1:13050755-13050774 | Msa0349470:CDS | 40.0% |
| !! | CATTTCTGGTCTGTCTATCA+GGG | - | chr3_1:13050756-13050775 | Msa0349470:CDS | 40.0% |
| GCAACGAATCGTAATATTGG+AGG | - | chr3_1:13050868-13050887 | Msa0349470:intron | 40.0% | |
| ! | AAGCTCATATCGCAGGTTTT+TGG | - | chr3_1:13051005-13051024 | Msa0349470:intron | 40.0% |
| GATGGTAAATTAGTGGCAGT+TGG | - | chr3_1:13051117-13051136 | Msa0349470:intron | 40.0% | |
| TGGTAAATTAGTGGCAGTTG+GGG | - | chr3_1:13051119-13051138 | Msa0349470:intron | 40.0% | |
| AGTGATAGAAAGGCAAAGTC+TGG | + | chr3_1:13051195-13051214 | None:intergenic | 40.0% | |
| GACTTTGCCTTTCTATCACT+AGG | - | chr3_1:13051195-13051214 | Msa0349470:intron | 40.0% | |
| GTACTTGCCTAGTGATAGAA+AGG | + | chr3_1:13051205-13051224 | None:intergenic | 40.0% | |
| CTGCTCTTCAAGAAATTGGT+TGG | - | chr3_1:13051226-13051245 | Msa0349470:intron | 40.0% | |
| AAACTACAAGCATGGTGAAG+TGG | + | chr3_1:13051418-13051437 | None:intergenic | 40.0% | |
| ATCAATGAATGATCTCCAGG+TGG | - | chr3_1:13051662-13051681 | Msa0349470:intron | 40.0% | |
| TCAATGAATGATCTCCAGGT+GGG | - | chr3_1:13051663-13051682 | Msa0349470:intron | 40.0% | |
| AATGTCAAATGAAACCCACC+TGG | + | chr3_1:13051680-13051699 | None:intergenic | 40.0% | |
| GGGTTTCATTTGACATTGCA+AGG | - | chr3_1:13051683-13051702 | Msa0349470:intron | 40.0% | |
| TAACGCTTTCTGTCAAGCAA+AGG | + | chr3_1:13051709-13051728 | None:intergenic | 40.0% | |
| ATCTTCAGCAACTTGAAGTG+GGG | + | chr3_1:13051776-13051795 | None:intergenic | 40.0% | |
| GATCTTCAGCAACTTGAAGT+GGG | + | chr3_1:13051777-13051796 | None:intergenic | 40.0% | |
| TGATCTTCAGCAACTTGAAG+TGG | + | chr3_1:13051778-13051797 | None:intergenic | 40.0% | |
| TCAAGACACTATGTTAAGCC+AGG | - | chr3_1:13051795-13051814 | Msa0349470:intron | 40.0% | |
| !! | TTGCTGAAATCGCCATTTTC+TGG | + | chr3_1:13051961-13051980 | None:intergenic | 40.0% |
| TCATACCTTGTATCTCACAC+GGG | + | chr3_1:13052007-13052026 | None:intergenic | 40.0% | |
| CTTAAAGCACAGGAAGTAAC+TGG | + | chr3_1:13052053-13052072 | None:intergenic | 40.0% | |
| !! | AACATTTTCTAAGGATGGCC+AGG | + | chr3_1:13052078-13052097 | None:intergenic | 40.0% |
| !! | GTAATATCTTTTCGGGAGAC+GGG | + | chr3_1:13052209-13052228 | None:intergenic | 40.0% |
| !! | GGTAATATCTTTTCGGGAGA+CGG | + | chr3_1:13052210-13052229 | None:intergenic | 40.0% |
| AAAATATCGGTAAGTAGGGG+AGG | + | chr3_1:13052253-13052272 | None:intergenic | 40.0% | |
| TTATTTGGAGGTAACCGGAT+TGG | - | chr3_1:13052271-13052290 | Msa0349470:intron | 40.0% | |
| TATTTGGAGGTAACCGGATT+GGG | - | chr3_1:13052272-13052291 | Msa0349470:intron | 40.0% | |
| ACAACAAGTCAGACCAGAAT+GGG | + | chr3_1:13052433-13052452 | None:intergenic | 40.0% | |
| TCCTTCAGATATGAATAGCG+CGG | + | chr3_1:13052475-13052494 | None:intergenic | 40.0% | |
| AGTCACAGTTGCAGAAATAC+AGG | - | chr3_1:13052536-13052555 | Msa0349470:intron | 40.0% | |
| ACAGTTGCAGAAATACAGGA+GGG | - | chr3_1:13052540-13052559 | Msa0349470:intron | 40.0% | |
| ! | GGATACAGGATCTTATTTGC+TGG | + | chr3_1:13052659-13052678 | None:intergenic | 40.0% |
| TTTGATCCCCATTTGTCTCT+AGG | - | chr3_1:13052695-13052714 | Msa0349470:CDS | 40.0% | |
| TGCCATTCCTAGAGACAAAT+GGG | + | chr3_1:13052705-13052724 | None:intergenic | 40.0% | |
| ATGCCATTCCTAGAGACAAA+TGG | + | chr3_1:13052706-13052725 | None:intergenic | 40.0% | |
| CCATATTCAGCAACTAATGC+TGG | + | chr3_1:13052858-13052877 | None:intergenic | 40.0% | |
| CCAGCATTAGTTGCTGAATA+TGG | - | chr3_1:13052855-13052874 | Msa0349470:five_prime_UTR | 40.0% | |
| GAAGAATGTCGAGTACGAAG+AGG | - | chr3_1:13047112-13047131 | Msa0349470:three_prime_UTR | 45.0% | |
| TAGCAGTAGCAAAACCCCAA+AGG | - | chr3_1:13047143-13047162 | Msa0349470:three_prime_UTR | 45.0% | |
| AGCAACAACGCTTTCCTTTG+GGG | + | chr3_1:13047160-13047179 | None:intergenic | 45.0% | |
| CAGCAACAACGCTTTCCTTT+GGG | + | chr3_1:13047161-13047180 | None:intergenic | 45.0% | |
| TCAGCAACAACGCTTTCCTT+TGG | + | chr3_1:13047162-13047181 | None:intergenic | 45.0% | |
| !! | GAAAGCGTTGTTGCTGATTG+CGG | - | chr3_1:13047165-13047184 | Msa0349470:three_prime_UTR | 45.0% |
| ! | CATGCTGGCATATAGCCTTA+CGG | - | chr3_1:13047529-13047548 | Msa0349470:intron | 45.0% |
| ! | CTTGGTAGTCATACACCGTA+AGG | + | chr3_1:13047547-13047566 | None:intergenic | 45.0% |
| CTTACGGTGTATGACTACCA+AGG | - | chr3_1:13047545-13047564 | Msa0349470:intron | 45.0% | |
| CGATACTCTGCCAATACTCT+CGG | - | chr3_1:13047959-13047978 | Msa0349470:CDS | 45.0% | |
| !! | ATGGATGATGGTAATGGGAG+AGG | - | chr3_1:13048241-13048260 | Msa0349470:intron | 45.0% |
| ! | AATGGGAGAGGAGACTCTTT+TGG | - | chr3_1:13048253-13048272 | Msa0349470:intron | 45.0% |
| ATCCGGGCTTCATAGACTAT+AGG | - | chr3_1:13048593-13048612 | Msa0349470:CDS | 45.0% | |
| TCATAGACTATAGGCCGAGT+AGG | - | chr3_1:13048602-13048621 | Msa0349470:CDS | 45.0% | |
| ! | CTGTTAGCTCTTCTTGATCG+GGG | - | chr3_1:13048965-13048984 | Msa0349470:CDS | 45.0% |
| GATTGTATAGGAAGGGCAAC+AGG | + | chr3_1:13049038-13049057 | None:intergenic | 45.0% | |
| !! | ATGTGTCACTTCCTGGTGAA+TGG | - | chr3_1:13049770-13049789 | Msa0349470:intron | 45.0% |
| ! | TTGATGGCTAACCAGAGTCA+GGG | - | chr3_1:13049871-13049890 | Msa0349470:intron | 45.0% |
| CTTAAGACTTTCCCTGACTC+TGG | + | chr3_1:13049885-13049904 | None:intergenic | 45.0% | |
| CAGAGTCAGGGAAAGTCTTA+AGG | - | chr3_1:13049883-13049902 | Msa0349470:intron | 45.0% | |
| GAAGTCCTCACATAGTCACA+TGG | - | chr3_1:13049915-13049934 | Msa0349470:intron | 45.0% | |
| ! | CGAGTTGAATACCTACCAAC+TGG | - | chr3_1:13049972-13049991 | Msa0349470:intron | 45.0% |
| CGAAAATTGGTCCAGTTGGT+AGG | + | chr3_1:13049986-13050005 | None:intergenic | 45.0% | |
| CCTACGAAAATTGGTCCAGT+TGG | + | chr3_1:13049990-13050009 | None:intergenic | 45.0% | |
| ! | CCAACTGGACCAATTTTCGT+AGG | - | chr3_1:13049987-13050006 | Msa0349470:intron | 45.0% |
| GTGGCAAAGCCTACGAAAAT+TGG | + | chr3_1:13049999-13050018 | None:intergenic | 45.0% | |
| ACCGATGGTTCTTTCTTCCT+AGG | - | chr3_1:13050254-13050273 | Msa0349470:intron | 45.0% | |
| !! | TGGAGCATGATGGGTTGTTA+TGG | + | chr3_1:13050360-13050379 | None:intergenic | 45.0% |
| CTTCTGACATGGAGCATGAT+GGG | + | chr3_1:13050369-13050388 | None:intergenic | 45.0% | |
| TCTTCTGACATGGAGCATGA+TGG | + | chr3_1:13050370-13050389 | None:intergenic | 45.0% | |
| GTGCACATGTTCACTGAGAA+CGG | - | chr3_1:13050469-13050488 | Msa0349470:intron | 45.0% | |
| TGCACATGTTCACTGAGAAC+GGG | - | chr3_1:13050470-13050489 | Msa0349470:intron | 45.0% | |
| CAGTCAGAATGGTTTCACAG+GGG | - | chr3_1:13050527-13050546 | Msa0349470:intron | 45.0% | |
| GGTTTCACAGGGGAAAAAGA+AGG | - | chr3_1:13050537-13050556 | Msa0349470:intron | 45.0% | |
| CGATTCGTTGCAGACTTCTT+TGG | + | chr3_1:13050859-13050878 | None:intergenic | 45.0% | |
| ACACAGAAAGCTCATATCGC+AGG | - | chr3_1:13050998-13051017 | Msa0349470:intron | 45.0% | |
| GATAACACAGTTCCTCCTTG+TGG | - | chr3_1:13051063-13051082 | Msa0349470:intron | 45.0% | |
| ! | ACAGTTCCTCCTTGTGGTTT+TGG | - | chr3_1:13051069-13051088 | Msa0349470:intron | 45.0% |
| AAAGAGCCAAAACCACAAGG+AGG | + | chr3_1:13051078-13051097 | None:intergenic | 45.0% | |
| TGGAAAGAGCCAAAACCACA+AGG | + | chr3_1:13051081-13051100 | None:intergenic | 45.0% | |
| TGGTTGGGTGAAAGATAACC+AGG | - | chr3_1:13051242-13051261 | Msa0349470:intron | 45.0% | |
| GTACTGGAGACTAGGACAAT+AGG | + | chr3_1:13051268-13051287 | None:intergenic | 45.0% | |
| !! | GAGGACATAGTAGCTCTGAA+GGG | + | chr3_1:13051350-13051369 | None:intergenic | 45.0% |
| !! | AGAGGACATAGTAGCTCTGA+AGG | + | chr3_1:13051351-13051370 | None:intergenic | 45.0% |
| !! | TTAAGCCAGGTTGATGACAG+TGG | - | chr3_1:13051808-13051827 | Msa0349470:intron | 45.0% |
| ATTTGGAGGTAACCGGATTG+GGG | - | chr3_1:13052273-13052292 | Msa0349470:CDS | 45.0% | |
| CTCTATCACTATCCCCAATC+CGG | + | chr3_1:13052288-13052307 | None:intergenic | 45.0% | |
| GACAACAAGTCAGACCAGAA+TGG | + | chr3_1:13052434-13052453 | None:intergenic | 45.0% | |
| ACCGCGCTATTCATATCTGA+AGG | - | chr3_1:13052471-13052490 | Msa0349470:intron | 45.0% | |
| CACAGTTGCAGAAATACAGG+AGG | - | chr3_1:13052539-13052558 | Msa0349470:intron | 45.0% | |
| CAGAAATACAGGAGGGTTGT+CGG | - | chr3_1:13052547-13052566 | Msa0349470:intron | 45.0% | |
| ! | TCCCCATTTGTCTCTAGGAA+TGG | - | chr3_1:13052700-13052719 | Msa0349470:CDS | 45.0% |
| GCCATTCCTAGAGACAAATG+GGG | + | chr3_1:13052704-13052723 | None:intergenic | 45.0% | |
| !! | AAAAGATATAATATATTTAA+GGG | + | chr3_1:13049549-13049568 | None:intergenic | 5.0% |
| !! | TAAAAGATATAATATATTTA+AGG | + | chr3_1:13049550-13049569 | None:intergenic | 5.0% |
| !!! | TTTTATTTTATAACAATTAT+TGG | - | chr3_1:13051490-13051509 | Msa0349470:intron | 5.0% |
| TGAGAGATGCTATTGGGACG+AGG | + | chr3_1:13047225-13047244 | None:intergenic | 50.0% | |
| CGTCCCAATAGCATCTCTCA+TGG | - | chr3_1:13047225-13047244 | Msa0349470:exon | 50.0% | |
| CGGTGTATGACTACCAAGGT+TGG | - | chr3_1:13047549-13047568 | Msa0349470:intron | 50.0% | |
| CTGGGCTTCGTAGCCTATAA+TGG | + | chr3_1:13047892-13047911 | None:intergenic | 50.0% | |
| TCACACCCACACCATGTATC+CGG | - | chr3_1:13048576-13048595 | Msa0349470:CDS | 50.0% | |
| GTCTATGAAGCCCGGATACA+TGG | + | chr3_1:13048590-13048609 | None:intergenic | 50.0% | |
| GGCCTATAGTCTATGAAGCC+CGG | + | chr3_1:13048598-13048617 | None:intergenic | 50.0% | |
| AGACTATAGGCCGAGTAGGA+TGG | - | chr3_1:13048606-13048625 | Msa0349470:CDS | 50.0% | |
| CGGTCGTTAACCATCCTACT+CGG | + | chr3_1:13048619-13048638 | None:intergenic | 50.0% | |
| ! | TCTTTGAAGGGGGGGAAGTT+AGG | + | chr3_1:13048703-13048722 | None:intergenic | 50.0% |
| GGAAGTGACACATGTCCCAA+AGG | + | chr3_1:13049763-13049782 | None:intergenic | 50.0% | |
| !! | TTGGGACATGTGTCACTTCC+TGG | - | chr3_1:13049763-13049782 | Msa0349470:intron | 50.0% |
| ! | CTTGATGGCTAACCAGAGTC+AGG | - | chr3_1:13049870-13049889 | Msa0349470:intron | 50.0% |
| ACTGCCCATGTGACTATGTG+AGG | + | chr3_1:13049923-13049942 | None:intergenic | 50.0% | |
| GCACATGTTCACTGAGAACG+GGG | - | chr3_1:13050471-13050490 | Msa0349470:intron | 50.0% | |
| GAGAACGGGGAATTTCCATC+TGG | - | chr3_1:13050484-13050503 | Msa0349470:intron | 50.0% | |
| TAAGAGGTCTTCGGACCCAT+TGG | + | chr3_1:13050569-13050588 | None:intergenic | 50.0% | |
| CCTTGTCCCTTGACTTTGCT+CGG | + | chr3_1:13050633-13050652 | None:intergenic | 50.0% | |
| GCAAAGTCAAGGGACAAGGA+TGG | - | chr3_1:13050634-13050653 | Msa0349470:intron | 50.0% | |
| CTGTCTATCAGGGCTTGCAA+TGG | - | chr3_1:13050766-13050785 | Msa0349470:CDS | 50.0% | |
| CTTGACCACTGTCATCAACC+TGG | + | chr3_1:13051816-13051835 | None:intergenic | 50.0% | |
| ! | CTTCCTGTGCTTTAAGCACC+TGG | - | chr3_1:13052057-13052076 | Msa0349470:intron | 50.0% |
| ! | CGGATTGGGGATAGTGATAG+AGG | - | chr3_1:13052286-13052305 | Msa0349470:CDS | 50.0% |
| TCGTGAGCAGCAGAGATACT+TGG | - | chr3_1:13052513-13052532 | Msa0349470:intron | 50.0% | |
| TCCAGTGTTATCCGAGCGAA+TGG | - | chr3_1:13052570-13052589 | Msa0349470:intron | 50.0% | |
| ACCATTCGCTCGGATAACAC+TGG | + | chr3_1:13052574-13052593 | None:intergenic | 50.0% | |
| GAGAGAGTAGACCATTCGCT+CGG | + | chr3_1:13052584-13052603 | None:intergenic | 50.0% | |
| GAGCGAATGGTCTACTCTCT+CGG | - | chr3_1:13052583-13052602 | Msa0349470:intron | 50.0% | |
| AAGATCCTGTATCCAGCAGC+TGG | - | chr3_1:13052665-13052684 | Msa0349470:CDS | 50.0% | |
| TCAAATTCAGCTCCAGCTGC+TGG | + | chr3_1:13052680-13052699 | None:intergenic | 50.0% | |
| !! | GGAAAGCGTCGAAGCTCTTG+TGG | - | chr3_1:13047186-13047205 | Msa0349470:three_prime_UTR | 55.0% |
| CACACCCACACCATGTATCC+GGG | - | chr3_1:13048577-13048596 | Msa0349470:CDS | 55.0% | |
| GAAGCCCGGATACATGGTGT+GGG | + | chr3_1:13048584-13048603 | None:intergenic | 55.0% | |
| TGAAGCCCGGATACATGGTG+TGG | + | chr3_1:13048585-13048604 | None:intergenic | 55.0% | |
| GGATGGTTAACGACCGAGTC+AGG | - | chr3_1:13048623-13048642 | Msa0349470:CDS | 55.0% | |
| TAGCTCTTCTTGATCGGGGC+TGG | - | chr3_1:13048969-13048988 | Msa0349470:CDS | 55.0% | |
| CCGAGCAAAGTCAAGGGACA+AGG | - | chr3_1:13050630-13050649 | Msa0349470:intron | 55.0% | |
| GGAGACTAGGACAATAGGCC+TGG | + | chr3_1:13051263-13051282 | None:intergenic | 55.0% | |
| GGGATCCCGTGTGAGATACA+AGG | - | chr3_1:13051999-13052018 | Msa0349470:intron | 55.0% | |
| TGGCCAGGTGCTTAAAGCAC+AGG | + | chr3_1:13052063-13052082 | None:intergenic | 55.0% | |
| ! | CGGGAGACGGGAGTATGAAA+AGG | + | chr3_1:13052197-13052216 | None:intergenic | 55.0% |
| GATCGGGGCTGGAGAAGATC+TGG | - | chr3_1:13048980-13048999 | Msa0349470:CDS | 60.0% | |
| CAGCTCCAGCTGCTGGATAC+AGG | + | chr3_1:13052673-13052692 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 13046874 | 13052965 | 13046874 | ID=Msa0349470;Name=Msa0349470 |
| chr3_1 | mRNA | 13046874 | 13052965 | 13046874 | ID=Msa0349470-mRNA-1;Parent=Msa0349470;Name=Msa0349470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=243|1|1|1|1|1|6|356|626 |
| chr3_1 | exon | 13046874 | 13047346 | 13046874 | ID=Msa0349470-mRNA-1:exon:3343;Parent=Msa0349470-mRNA-1 |
| chr3_1 | exon | 13047819 | 13048158 | 13047819 | ID=Msa0349470-mRNA-1:exon:3342;Parent=Msa0349470-mRNA-1 |
| chr3_1 | exon | 13048460 | 13049563 | 13048460 | ID=Msa0349470-mRNA-1:exon:3341;Parent=Msa0349470-mRNA-1 |
| chr3_1 | exon | 13050717 | 13050867 | 13050717 | ID=Msa0349470-mRNA-1:exon:3340;Parent=Msa0349470-mRNA-1 |
| chr3_1 | exon | 13052273 | 13052311 | 13052273 | ID=Msa0349470-mRNA-1:exon:3339;Parent=Msa0349470-mRNA-1 |
| chr3_1 | exon | 13052593 | 13052965 | 13052593 | ID=Msa0349470-mRNA-1:exon:3338;Parent=Msa0349470-mRNA-1 |
| chr3_1 | five_prime_UTR | 13052723 | 13052965 | 13052723 | ID=Msa0349470-mRNA-1:five_prime_utr;Parent=Msa0349470-mRNA-1 |
| chr3_1 | CDS | 13052593 | 13052722 | 13052593 | ID=Msa0349470-mRNA-1:cds;Parent=Msa0349470-mRNA-1 |
| chr3_1 | CDS | 13052273 | 13052311 | 13052273 | ID=Msa0349470-mRNA-1:cds;Parent=Msa0349470-mRNA-1 |
| chr3_1 | CDS | 13050717 | 13050867 | 13050717 | ID=Msa0349470-mRNA-1:cds;Parent=Msa0349470-mRNA-1 |
| chr3_1 | CDS | 13048460 | 13049563 | 13048460 | ID=Msa0349470-mRNA-1:cds;Parent=Msa0349470-mRNA-1 |
| chr3_1 | CDS | 13047819 | 13048158 | 13047819 | ID=Msa0349470-mRNA-1:cds;Parent=Msa0349470-mRNA-1 |
| chr3_1 | CDS | 13047230 | 13047346 | 13047230 | ID=Msa0349470-mRNA-1:cds;Parent=Msa0349470-mRNA-1 |
| chr3_1 | three_prime_UTR | 13046874 | 13047229 | 13046874 | ID=Msa0349470-mRNA-1:three_prime_utr;Parent=Msa0349470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
