Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572550 | XP_013447177.1 | 89.503 | 181 | 13 | 1 | 1 | 175 | 1 | 181 | 1.55e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572550 | A0A072TUK3 | 89.503 | 181 | 13 | 1 | 1 | 175 | 1 | 181 | 7.39e-111 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0572550 | 0.810461 | 1.139804e-50 | -8.615850e-47 |
| Msa0046110 | Msa0572550 | 0.819046 | 1.426238e-52 | -8.615850e-47 |
| Msa0090510 | Msa0572550 | -0.817152 | 3.824216e-52 | -8.615850e-47 |
| Msa0092480 | Msa0572550 | 0.807832 | 4.168748e-50 | -8.615850e-47 |
| Msa0093950 | Msa0572550 | 0.804623 | 1.976570e-49 | -8.615850e-47 |
| Msa0140770 | Msa0572550 | 0.814911 | 1.210162e-51 | -8.615850e-47 |
| Msa0183910 | Msa0572550 | -0.801001 | 1.106370e-48 | -8.615850e-47 |
| Msa0187590 | Msa0572550 | 0.833684 | 4.630680e-56 | -8.615850e-47 |
| Msa0206630 | Msa0572550 | 0.801117 | 1.047642e-48 | -8.615850e-47 |
| Msa0220400 | Msa0572550 | 0.827244 | 1.741166e-54 | -8.615850e-47 |
| Msa0234410 | Msa0572550 | 0.805779 | 1.132143e-49 | -8.615850e-47 |
| Msa0374340 | Msa0572550 | 0.819627 | 1.051697e-52 | -8.615850e-47 |
| Msa0374420 | Msa0572550 | 0.809924 | 1.487641e-50 | -8.615850e-47 |
| Msa0383870 | Msa0572550 | 0.807510 | 4.880772e-50 | -8.615850e-47 |
| Msa0403470 | Msa0572550 | 0.836646 | 8.283595e-57 | -8.615850e-47 |
| Msa0403480 | Msa0572550 | 0.811493 | 6.809925e-51 | -8.615850e-47 |
| Msa0476170 | Msa0572550 | 0.813739 | 2.197680e-51 | -8.615850e-47 |
| Msa0479760 | Msa0572550 | 0.816750 | 4.707143e-52 | -8.615850e-47 |
| Msa0296050 | Msa0572550 | 0.815079 | 1.110902e-51 | -8.615850e-47 |
| Msa0315690 | Msa0572550 | -0.803191 | 3.921796e-49 | -8.615850e-47 |
| Msa0333970 | Msa0572550 | 0.808165 | 3.541985e-50 | -8.615850e-47 |
| Msa0500610 | Msa0572550 | 0.817752 | 2.802292e-52 | -8.615850e-47 |
| Msa0500700 | Msa0572550 | 0.830677 | 2.566178e-55 | -8.615850e-47 |
| Msa0523430 | Msa0572550 | 0.809178 | 2.150943e-50 | -8.615850e-47 |
| Msa0523490 | Msa0572550 | 0.814012 | 1.913074e-51 | -8.615850e-47 |
| Msa0548650 | Msa0572550 | 0.800008 | 1.762593e-48 | -8.615850e-47 |
| Msa0559450 | Msa0572550 | 0.805657 | 1.200892e-49 | -8.615850e-47 |
| Msa0572550 | Msa0576020 | 0.818297 | 2.109841e-52 | -8.615850e-47 |
| Msa0572550 | Msa0576080 | 0.830257 | 3.252167e-55 | -8.615850e-47 |
| Msa0572550 | Msa0576120 | 0.847785 | 9.285095e-60 | -8.615850e-47 |
| Msa0572550 | Msa0583360 | 0.813623 | 2.330617e-51 | -8.615850e-47 |
| Msa0572550 | Msa0589260 | 0.809197 | 2.130984e-50 | -8.615850e-47 |
| Msa0572550 | Msa0630770 | 0.813535 | 2.437059e-51 | -8.615850e-47 |
| Msa0572550 | Msa0637930 | 0.817449 | 3.278365e-52 | -8.615850e-47 |
| Msa0572550 | Msa0638010 | 0.812721 | 3.675962e-51 | -8.615850e-47 |
| Msa0572550 | Msa0665530 | 0.822253 | 2.615285e-53 | -8.615850e-47 |
| Msa0572550 | Msa0881530 | 0.808813 | 2.575220e-50 | -8.615850e-47 |
| Msa0572550 | Msa0944020 | -0.806993 | 6.279121e-50 | -8.615850e-47 |
| Msa0572550 | Msa0968470 | 0.815883 | 7.359637e-52 | -8.615850e-47 |
| Msa0572550 | Msa0982090 | 0.816054 | 6.739459e-52 | -8.615850e-47 |
| Msa0572550 | Msa1039190 | 0.800132 | 1.663646e-48 | -8.615850e-47 |
| Msa0572550 | Msa1085610 | 0.831997 | 1.215094e-55 | -8.615850e-47 |
| Msa0572550 | Msa1087520 | 0.817205 | 3.720900e-52 | -8.615850e-47 |
| Msa0572550 | Msa1129300 | 0.846942 | 1.581752e-59 | -8.615850e-47 |
| Msa0572550 | Msa1190100 | 0.890483 | 9.462164e-74 | -8.615850e-47 |
| Msa0572550 | Msa1208450 | 0.835468 | 1.648639e-56 | -8.615850e-47 |
| Msa0572550 | Msa1217420 | -0.823113 | 1.649569e-53 | -8.615850e-47 |
| Msa0572550 | Msa1225860 | 0.813759 | 2.175338e-51 | -8.615850e-47 |
| Msa0572550 | Msa1236110 | 0.807782 | 4.272820e-50 | -8.615850e-47 |
| Msa0572550 | Msa1258030 | 0.886204 | 4.190421e-72 | -8.615850e-47 |
| Msa0572550 | Msa1298390 | 0.811323 | 7.414190e-51 | -8.615850e-47 |
| Msa0572550 | Msa1325410 | 0.811517 | 6.728883e-51 | -8.615850e-47 |
| Msa0572550 | Msa1330540 | 0.829088 | 6.259770e-55 | -8.615850e-47 |
| Msa0572550 | Msa1340200 | -0.807289 | 5.434689e-50 | -8.615850e-47 |
| Msa0572550 | Msa1341300 | -0.815506 | 8.928310e-52 | -8.615850e-47 |
| Msa0572550 | Msa1346840 | -0.805996 | 1.019330e-49 | -8.615850e-47 |
| Msa0572550 | Msa1363820 | 0.881161 | 3.019528e-70 | -8.615850e-47 |
| Msa0572550 | Msa1364350 | 0.836385 | 9.651582e-57 | -8.615850e-47 |
| Msa0572550 | Msa1369920 | 0.823243 | 1.538484e-53 | -8.615850e-47 |
| Msa0572550 | Msa1375610 | 0.817007 | 4.121835e-52 | -8.615850e-47 |
| Msa0572550 | Msa1375970 | 0.803452 | 3.463318e-49 | -8.615850e-47 |
| Msa0572550 | Msa1376550 | 0.813000 | 3.194491e-51 | -8.615850e-47 |
| Msa0572550 | Msa1382380 | 0.816026 | 6.836160e-52 | -8.615850e-47 |
| Msa0572550 | Msa1384760 | 0.802185 | 6.326077e-49 | -8.615850e-47 |
| Msa0572550 | Msa1407880 | -0.802077 | 6.657606e-49 | -8.615850e-47 |
| Msa0572550 | Msa1452710 | -0.803437 | 3.488386e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572550 | MtrunA17_Chr8g0387991 | 88.950 | 181 | 14 | 1 | 1 | 175 | 1 | 181 | 3.52e-114 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572550 | AT1G64355.1 | 65.333 | 150 | 35 | 5 | 21 | 156 | 28 | 174 | 1.03e-57 | 179 |
| Msa0572550 | AT1G64355.3 | 67.778 | 90 | 22 | 3 | 32 | 117 | 43 | 129 | 1.60e-32 | 114 |
| Msa0572550 | AT1G64355.2 | 68.182 | 88 | 21 | 3 | 32 | 115 | 43 | 127 | 3.83e-31 | 110 |
Find 52 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTAATTTATCATTAAT+TGG | 0.227652 | 4_1:+75455213 | Msa0572550:three_prime_UTR |
| TCGGATGTGCCTCCAAATTT+TGG | 0.228216 | 4_1:+75455105 | Msa0572550:three_prime_UTR |
| TGATCATTGCACATCAAAAT+TGG | 0.269030 | 4_1:-75455246 | None:intergenic |
| GGTGAGGTTAGGAGAAGTTT+TGG | 0.272109 | 4_1:-75454423 | None:intergenic |
| GTTGAAGGGTTCATAAGTTT+AGG | 0.306773 | 4_1:-75454194 | None:intergenic |
| CACTAACTTGTTCATTGTGT+TGG | 0.314311 | 4_1:+75454947 | Msa0572550:CDS |
| TTAAATGAAAATCACGTTGC+AGG | 0.357937 | 4_1:-75454223 | None:intergenic |
| ACTAACTTGTTCATTGTGTT+GGG | 0.374119 | 4_1:+75454948 | Msa0572550:CDS |
| TTGAAGGGTTCATAAGTTTA+GGG | 0.376906 | 4_1:-75454193 | None:intergenic |
| TTGACAGCTAAGGTGCATTA+TGG | 0.386555 | 4_1:+75454867 | Msa0572550:intron |
| TGCCCCTGGGTGTTGATCCA+TGG | 0.395407 | 4_1:+75454309 | Msa0572550:CDS |
| AATCAGAAAAGCTGGAAATT+CGG | 0.416724 | 4_1:+75454983 | Msa0572550:CDS |
| TCTCCTAACCTCACCCTCTT+CGG | 0.418605 | 4_1:+75454431 | Msa0572550:CDS |
| AAACCGAAGAGGGTGAGGTT+AGG | 0.440423 | 4_1:-75454434 | None:intergenic |
| GATCGTGTGTGGATTGCCCC+TGG | 0.440978 | 4_1:+75454295 | Msa0572550:CDS |
| TCTAATGTGGATTGGTTACA+TGG | 0.443829 | 4_1:+75454900 | Msa0572550:CDS |
| CTTCTTTGTCTAATGTGGAT+TGG | 0.447286 | 4_1:+75454892 | Msa0572550:CDS |
| ATGTGGATTGGTTACATGGT+GGG | 0.450371 | 4_1:+75454904 | Msa0572550:CDS |
| TCGAAGGAGGAGAAGAAACC+TGG | 0.458784 | 4_1:+75455020 | Msa0572550:CDS |
| TGGAACTTCTTTGTCTAATG+TGG | 0.464776 | 4_1:+75454887 | Msa0572550:CDS |
| AGAGAGGGAATCAGAAAAGC+TGG | 0.466045 | 4_1:+75454975 | Msa0572550:CDS |
| GCCCCTGGGTGTTGATCCAT+GGG | 0.473465 | 4_1:+75454310 | Msa0572550:CDS |
| CGTTGCAGGAAGGTCGTTGA+AGG | 0.474175 | 4_1:-75454209 | None:intergenic |
| TGGAGGCACATCCGAGTCAA+TGG | 0.486922 | 4_1:-75455097 | None:intergenic |
| ATTGTGTTGGGTTTGAGAGA+GGG | 0.496509 | 4_1:+75454960 | Msa0572550:CDS |
| AGCGATGCTCTGTGAATCAA+TGG | 0.506212 | 4_1:-75454339 | None:intergenic |
| TGTAATTTGTTCCATTGACT+CGG | 0.518063 | 4_1:+75455086 | Msa0572550:three_prime_UTR |
| GGAGAAGAAACCTGGGATGA+AGG | 0.519084 | 4_1:+75455028 | Msa0572550:CDS |
| CATTGTGTTGGGTTTGAGAG+AGG | 0.529587 | 4_1:+75454959 | Msa0572550:CDS |
| GTGCCCATGGATCAACACCC+AGG | 0.532974 | 4_1:-75454313 | None:intergenic |
| AAGTACAAGAAACCAATGTA+AGG | 0.534146 | 4_1:-75454389 | None:intergenic |
| CAAGTTAGTGAGAGTGAGAA+GGG | 0.535305 | 4_1:-75454934 | None:intergenic |
| TGTGGATTGGTTACATGGTG+GGG | 0.539691 | 4_1:+75454905 | Msa0572550:CDS |
| AGTAGAAACCGAAGAGGGTG+AGG | 0.547358 | 4_1:-75454439 | None:intergenic |
| GATTTACAGAGAGATAGAAC+AGG | 0.552911 | 4_1:-75454170 | None:intergenic |
| TGCCCATGGATCAACACCCA+GGG | 0.560771 | 4_1:-75454312 | None:intergenic |
| AGCAACTAGACCTTCATCCC+AGG | 0.562545 | 4_1:-75455038 | None:intergenic |
| AAATCACAGCCAAAATTTGG+AGG | 0.572411 | 4_1:-75455114 | None:intergenic |
| ATCGTGTGTGGATTGCCCCT+GGG | 0.578639 | 4_1:+75454296 | Msa0572550:CDS |
| GGAACAAATTACAATAACAC+TGG | 0.586606 | 4_1:-75455076 | None:intergenic |
| AATGTGGATTGGTTACATGG+TGG | 0.588190 | 4_1:+75454903 | Msa0572550:CDS |
| ATGAAAATCACGTTGCAGGA+AGG | 0.588711 | 4_1:-75454219 | None:intergenic |
| ACAAGTTAGTGAGAGTGAGA+AGG | 0.592216 | 4_1:-75454935 | None:intergenic |
| AAATTACAATAACACTGGCA+TGG | 0.603957 | 4_1:-75455071 | None:intergenic |
| TGAAGGGTTCATAAGTTTAG+GGG | 0.609851 | 4_1:-75454192 | None:intergenic |
| TTACAAACAAAACAATCGAG+AGG | 0.616166 | 4_1:-75455175 | None:intergenic |
| CGAAGGAGGAGAAGAAACCT+GGG | 0.616213 | 4_1:+75455021 | Msa0572550:CDS |
| AAGAGAACAGTGATCGTGTG+TGG | 0.618841 | 4_1:+75454284 | Msa0572550:CDS |
| GTTGCAGGAAGGTCGTTGAA+GGG | 0.620276 | 4_1:-75454208 | None:intergenic |
| GAATCAATGGAAGGTGCCCA+TGG | 0.621299 | 4_1:-75454326 | None:intergenic |
| GCCCATGGATCAACACCCAG+GGG | 0.698475 | 4_1:-75454311 | None:intergenic |
| ATGCTCTGTGAATCAATGGA+AGG | 0.701730 | 4_1:-75454335 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAATAAAAAGGAAA+AGG | - | chr4_1:75454556-75454575 | None:intergenic | 10.0% |
| !!! | AAAAAAATTAATTTGCAGAA+TGG | + | chr4_1:75454124-75454143 | Msa0572550:exon | 15.0% |
| !! | TAATTTAATCATTTCAAATG+TGG | - | chr4_1:75454827-75454846 | None:intergenic | 15.0% |
| !! | TTGTGTAATTTATCATTAAT+TGG | + | chr4_1:75455213-75455232 | Msa0572550:three_prime_UTR | 15.0% |
| !!! | CTCTAATTGAACTTTATTTT+CGG | - | chr4_1:75454624-75454643 | None:intergenic | 20.0% |
| !!! | TTTTCTTTGTTTCCTTACAT+TGG | + | chr4_1:75454377-75454396 | Msa0572550:CDS | 25.0% |
| ! | AAGAAAAGAAAACTAACTTG+TGG | - | chr4_1:75454486-75454505 | None:intergenic | 25.0% |
| ! | TTGATTTATTATGATTCAGC+TGG | + | chr4_1:75454756-75454775 | Msa0572550:intron | 25.0% |
| ! | TTTAATTGTTCTGTTTGGTT+CGG | + | chr4_1:75454779-75454798 | Msa0572550:intron | 25.0% |
| ! | ATTACTTATGTTTAGTTGTG+TGG | + | chr4_1:75454843-75454862 | Msa0572550:intron | 25.0% |
| ! | AAAAAATCACAGCCAAAATT+TGG | - | chr4_1:75455120-75455139 | None:intergenic | 25.0% |
| TTGAAGGGTTCATAAGTTTA+GGG | - | chr4_1:75454196-75454215 | None:intergenic | 30.0% | |
| TTAAATGAAAATCACGTTGC+AGG | - | chr4_1:75454226-75454245 | None:intergenic | 30.0% | |
| AAGTACAAGAAACCAATGTA+AGG | - | chr4_1:75454392-75454411 | None:intergenic | 30.0% | |
| CTACGATTAAGTTATTCGAA+CGG | - | chr4_1:75454723-75454742 | None:intergenic | 30.0% | |
| !!! | TGGTTCGGTTTTTAGAATAT+TGG | + | chr4_1:75454794-75454813 | Msa0572550:intron | 30.0% |
| !!! | GGTTCGGTTTTTAGAATATT+GGG | + | chr4_1:75454795-75454814 | Msa0572550:intron | 30.0% |
| !! | ACTAACTTGTTCATTGTGTT+GGG | + | chr4_1:75454948-75454967 | Msa0572550:CDS | 30.0% |
| AATCAGAAAAGCTGGAAATT+CGG | + | chr4_1:75454983-75455002 | Msa0572550:CDS | 30.0% | |
| AAATTACAATAACACTGGCA+TGG | - | chr4_1:75455074-75455093 | None:intergenic | 30.0% | |
| GGAACAAATTACAATAACAC+TGG | - | chr4_1:75455079-75455098 | None:intergenic | 30.0% | |
| !! | TGTAATTTGTTCCATTGACT+CGG | + | chr4_1:75455086-75455105 | Msa0572550:three_prime_UTR | 30.0% |
| TTACAAACAAAACAATCGAG+AGG | - | chr4_1:75455178-75455197 | None:intergenic | 30.0% | |
| TGATCATTGCACATCAAAAT+TGG | - | chr4_1:75455249-75455268 | None:intergenic | 30.0% | |
| GATTTACAGAGAGATAGAAC+AGG | - | chr4_1:75454173-75454192 | None:intergenic | 35.0% | |
| TGAAGGGTTCATAAGTTTAG+GGG | - | chr4_1:75454195-75454214 | None:intergenic | 35.0% | |
| GTTGAAGGGTTCATAAGTTT+AGG | - | chr4_1:75454197-75454216 | None:intergenic | 35.0% | |
| !!! | GTTAGGAGAAGTTTTGGATT+TGG | - | chr4_1:75454420-75454439 | None:intergenic | 35.0% |
| CAAAAAGTAGAAACCGAAGA+GGG | - | chr4_1:75454447-75454466 | None:intergenic | 35.0% | |
| !! | TACTTTTTGCTCGCTTTTGT+TGG | + | chr4_1:75454458-75454477 | Msa0572550:CDS | 35.0% |
| !!! | TTATTTTGAACAGTTCCAGC+TGG | + | chr4_1:75454572-75454591 | Msa0572550:intron | 35.0% |
| !!! | CAATGTTTTAAAAGCCGAAC+TGG | + | chr4_1:75454652-75454671 | Msa0572550:intron | 35.0% |
| ! | GCTGGTTTAATTGTTCTGTT+TGG | + | chr4_1:75454774-75454793 | Msa0572550:intron | 35.0% |
| TGGAACTTCTTTGTCTAATG+TGG | + | chr4_1:75454887-75454906 | Msa0572550:CDS | 35.0% | |
| CTTCTTTGTCTAATGTGGAT+TGG | + | chr4_1:75454892-75454911 | Msa0572550:CDS | 35.0% | |
| !! | TCTAATGTGGATTGGTTACA+TGG | + | chr4_1:75454900-75454919 | Msa0572550:CDS | 35.0% |
| !! | CACTAACTTGTTCATTGTGT+TGG | + | chr4_1:75454947-75454966 | Msa0572550:CDS | 35.0% |
| TGGAAATTCGGAGAAAAACA+CGG | + | chr4_1:75454995-75455014 | Msa0572550:CDS | 35.0% | |
| AAATCACAGCCAAAATTTGG+AGG | - | chr4_1:75455117-75455136 | None:intergenic | 35.0% | |
| ATGAAAATCACGTTGCAGGA+AGG | - | chr4_1:75454222-75454241 | None:intergenic | 40.0% | |
| ATGCTCTGTGAATCAATGGA+AGG | - | chr4_1:75454338-75454357 | None:intergenic | 40.0% | |
| GCAAAAAGTAGAAACCGAAG+AGG | - | chr4_1:75454448-75454467 | None:intergenic | 40.0% | |
| ACAGTTCCAGCTGGAATTTA+TGG | + | chr4_1:75454581-75454600 | Msa0572550:intron | 40.0% | |
| ACAGCATACAGAATGACAGT+TGG | + | chr4_1:75454696-75454715 | Msa0572550:intron | 40.0% | |
| TTGACAGCTAAGGTGCATTA+TGG | + | chr4_1:75454867-75454886 | Msa0572550:intron | 40.0% | |
| !! | AATGTGGATTGGTTACATGG+TGG | + | chr4_1:75454903-75454922 | Msa0572550:CDS | 40.0% |
| !! | ATGTGGATTGGTTACATGGT+GGG | + | chr4_1:75454904-75454923 | Msa0572550:CDS | 40.0% |
| CAAGTTAGTGAGAGTGAGAA+GGG | - | chr4_1:75454937-75454956 | None:intergenic | 40.0% | |
| ACAAGTTAGTGAGAGTGAGA+AGG | - | chr4_1:75454938-75454957 | None:intergenic | 40.0% | |
| ATTGTGTTGGGTTTGAGAGA+GGG | + | chr4_1:75454960-75454979 | Msa0572550:CDS | 40.0% | |
| AAGAGAACAGTGATCGTGTG+TGG | + | chr4_1:75454284-75454303 | Msa0572550:CDS | 45.0% | |
| AGCGATGCTCTGTGAATCAA+TGG | - | chr4_1:75454342-75454361 | None:intergenic | 45.0% | |
| ! | GGTGAGGTTAGGAGAAGTTT+TGG | - | chr4_1:75454426-75454445 | None:intergenic | 45.0% |
| GACTCACCATAAATTCCAGC+TGG | - | chr4_1:75454590-75454609 | None:intergenic | 45.0% | |
| AGCCGAACTGGACATTAAAC+CGG | + | chr4_1:75454664-75454683 | Msa0572550:intron | 45.0% | |
| !! | TGCCGGTTTAATGTCCAGTT+CGG | - | chr4_1:75454669-75454688 | None:intergenic | 45.0% |
| AACTGGACATTAAACCGGCA+TGG | + | chr4_1:75454669-75454688 | Msa0572550:intron | 45.0% | |
| TGTATGCTGTTGAACCATGC+CGG | - | chr4_1:75454686-75454705 | None:intergenic | 45.0% | |
| !! | TGTGGATTGGTTACATGGTG+GGG | + | chr4_1:75454905-75454924 | Msa0572550:CDS | 45.0% |
| CATTGTGTTGGGTTTGAGAG+AGG | + | chr4_1:75454959-75454978 | Msa0572550:CDS | 45.0% | |
| AGAGAGGGAATCAGAAAAGC+TGG | + | chr4_1:75454975-75454994 | Msa0572550:CDS | 45.0% | |
| GGAGAAAAACACGGAATCGA+AGG | + | chr4_1:75455004-75455023 | Msa0572550:CDS | 45.0% | |
| GAAAAACACGGAATCGAAGG+AGG | + | chr4_1:75455007-75455026 | Msa0572550:CDS | 45.0% | |
| ! | TCGGATGTGCCTCCAAATTT+TGG | + | chr4_1:75455105-75455124 | Msa0572550:three_prime_UTR | 45.0% |
| !! | TTCAAAATAAATAAATAAAA+AGG | - | chr4_1:75454562-75454581 | None:intergenic | 5.0% |
| GTTGCAGGAAGGTCGTTGAA+GGG | - | chr4_1:75454211-75454230 | None:intergenic | 50.0% | |
| !! | GAATCAATGGAAGGTGCCCA+TGG | - | chr4_1:75454329-75454348 | None:intergenic | 50.0% |
| TCTCCTAACCTCACCCTCTT+CGG | + | chr4_1:75454431-75454450 | Msa0572550:CDS | 50.0% | |
| AAACCGAAGAGGGTGAGGTT+AGG | - | chr4_1:75454437-75454456 | None:intergenic | 50.0% | |
| AGTAGAAACCGAAGAGGGTG+AGG | - | chr4_1:75454442-75454461 | None:intergenic | 50.0% | |
| GTTGTGTGGCTTGACAGCTA+AGG | + | chr4_1:75454857-75454876 | Msa0572550:intron | 50.0% | |
| TCGAAGGAGGAGAAGAAACC+TGG | + | chr4_1:75455020-75455039 | Msa0572550:CDS | 50.0% | |
| CGAAGGAGGAGAAGAAACCT+GGG | + | chr4_1:75455021-75455040 | Msa0572550:CDS | 50.0% | |
| GGAGAAGAAACCTGGGATGA+AGG | + | chr4_1:75455028-75455047 | Msa0572550:CDS | 50.0% | |
| AGCAACTAGACCTTCATCCC+AGG | - | chr4_1:75455041-75455060 | None:intergenic | 50.0% | |
| CGTTGCAGGAAGGTCGTTGA+AGG | - | chr4_1:75454212-75454231 | None:intergenic | 55.0% | |
| ! | ATCGTGTGTGGATTGCCCCT+GGG | + | chr4_1:75454296-75454315 | Msa0572550:CDS | 55.0% |
| TGCCCATGGATCAACACCCA+GGG | - | chr4_1:75454315-75454334 | None:intergenic | 55.0% | |
| ! | TGGAGGCACATCCGAGTCAA+TGG | - | chr4_1:75455100-75455119 | None:intergenic | 55.0% |
| ! | GATCGTGTGTGGATTGCCCC+TGG | + | chr4_1:75454295-75454314 | Msa0572550:CDS | 60.0% |
| !! | TGCCCCTGGGTGTTGATCCA+TGG | + | chr4_1:75454309-75454328 | Msa0572550:CDS | 60.0% |
| !! | GCCCCTGGGTGTTGATCCAT+GGG | + | chr4_1:75454310-75454329 | Msa0572550:CDS | 60.0% |
| GCCCATGGATCAACACCCAG+GGG | - | chr4_1:75454314-75454333 | None:intergenic | 60.0% | |
| GTGCCCATGGATCAACACCC+AGG | - | chr4_1:75454316-75454335 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 75454123 | 75455396 | 75454123 | ID=Msa0572550;Name=Msa0572550 |
| chr4_1 | mRNA | 75454123 | 75455396 | 75454123 | ID=Msa0572550-mRNA-1;Parent=Msa0572550;Name=Msa0572550-mRNA-1;_AED=0.02;_eAED=0.02;_QI=20|0|1|1|1|1|2|341|175 |
| chr4_1 | exon | 75454123 | 75454488 | 75454123 | ID=Msa0572550-mRNA-1:exon:26108;Parent=Msa0572550-mRNA-1 |
| chr4_1 | exon | 75454874 | 75455396 | 75454874 | ID=Msa0572550-mRNA-1:exon:26109;Parent=Msa0572550-mRNA-1 |
| chr4_1 | five_prime_UTR | 75454123 | 75454142 | 75454123 | ID=Msa0572550-mRNA-1:five_prime_utr;Parent=Msa0572550-mRNA-1 |
| chr4_1 | CDS | 75454143 | 75454488 | 75454143 | ID=Msa0572550-mRNA-1:cds;Parent=Msa0572550-mRNA-1 |
| chr4_1 | CDS | 75454874 | 75455055 | 75454874 | ID=Msa0572550-mRNA-1:cds;Parent=Msa0572550-mRNA-1 |
| chr4_1 | three_prime_UTR | 75455056 | 75455396 | 75455056 | ID=Msa0572550-mRNA-1:three_prime_utr;Parent=Msa0572550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
