Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450980 | sp|Q9SUI0|RC24_ARATH | 76.712 | 73 | 17 | 0 | 1 | 73 | 1 | 73 | 2.06e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450980 | G7JFL2 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.06e-46 | 152 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa1450980 | 0.828594 | 8.243564e-55 | -8.615850e-47 |
| Msa0017120 | Msa1450980 | 0.806297 | 8.808596e-50 | -8.615850e-47 |
| Msa0038310 | Msa1450980 | 0.851456 | 8.772761e-61 | -8.615850e-47 |
| Msa0047470 | Msa1450980 | 0.827786 | 1.290910e-54 | -8.615850e-47 |
| Msa0086090 | Msa1450980 | 0.824600 | 7.392052e-54 | -8.615850e-47 |
| Msa0114250 | Msa1450980 | 0.821887 | 3.179218e-53 | -8.615850e-47 |
| Msa1349360 | Msa1450980 | 0.804577 | 2.021087e-49 | -8.615850e-47 |
| Msa1354090 | Msa1450980 | 0.800328 | 1.517343e-48 | -8.615850e-47 |
| Msa1361190 | Msa1450980 | 0.819524 | 1.109912e-52 | -8.615850e-47 |
| Msa1378470 | Msa1450980 | 0.803703 | 3.071781e-49 | -8.615850e-47 |
| Msa1381130 | Msa1450980 | 0.811635 | 6.342296e-51 | -8.615850e-47 |
| Msa1381210 | Msa1450980 | -0.814395 | 1.574647e-51 | -8.615850e-47 |
| Msa1405770 | Msa1450980 | 0.802062 | 6.705225e-49 | -8.615850e-47 |
| Msa1422890 | Msa1450980 | 0.800260 | 1.566561e-48 | -8.615850e-47 |
| Msa1440180 | Msa1450980 | 0.815891 | 7.326383e-52 | -8.615850e-47 |
| Msa1449740 | Msa1450980 | 0.816825 | 4.529899e-52 | -8.615850e-47 |
| Msa0607280 | Msa1450980 | 0.800509 | 1.393840e-48 | -8.615850e-47 |
| Msa0618520 | Msa1450980 | 0.813097 | 3.040611e-51 | -8.615850e-47 |
| Msa0650620 | Msa1450980 | 0.802056 | 6.722901e-49 | -8.615850e-47 |
| Msa0650650 | Msa1450980 | 0.875413 | 3.141504e-68 | -8.615850e-47 |
| Msa0650740 | Msa1450980 | 0.873253 | 1.696634e-67 | -8.615850e-47 |
| Msa0660820 | Msa1450980 | 0.824536 | 7.653578e-54 | -8.615850e-47 |
| Msa0676100 | Msa1450980 | 0.813113 | 3.017353e-51 | -8.615850e-47 |
| Msa0698900 | Msa1450980 | 0.806560 | 7.752508e-50 | -8.615850e-47 |
| Msa0719340 | Msa1450980 | 0.819059 | 1.416715e-52 | -8.615850e-47 |
| Msa0743640 | Msa1450980 | 0.815508 | 8.916650e-52 | -8.615850e-47 |
| Msa0754350 | Msa1450980 | 0.806086 | 9.756378e-50 | -8.615850e-47 |
| Msa0755090 | Msa1450980 | 0.825032 | 5.846928e-54 | -8.615850e-47 |
| Msa0772150 | Msa1450980 | 0.804881 | 1.745981e-49 | -8.615850e-47 |
| Msa0787720 | Msa1450980 | 0.811692 | 6.165085e-51 | -8.615850e-47 |
| Msa0797000 | Msa1450980 | 0.801701 | 7.952943e-49 | -8.615850e-47 |
| Msa0828570 | Msa1450980 | 0.803665 | 3.128608e-49 | -8.615850e-47 |
| Msa0834460 | Msa1450980 | 0.810458 | 1.141067e-50 | -8.615850e-47 |
| Msa0838660 | Msa1450980 | 0.800357 | 1.497047e-48 | -8.615850e-47 |
| Msa0132620 | Msa1450980 | 0.825654 | 4.167244e-54 | -8.615850e-47 |
| Msa0178940 | Msa1450980 | 0.840605 | 7.861611e-58 | -8.615850e-47 |
| Msa0185340 | Msa1450980 | -0.810063 | 1.388884e-50 | -8.615850e-47 |
| Msa0185390 | Msa1450980 | 0.821886 | 3.180724e-53 | -8.615850e-47 |
| Msa0223100 | Msa1450980 | 0.809470 | 1.862257e-50 | -8.615850e-47 |
| Msa0223290 | Msa1450980 | 0.808211 | 3.461933e-50 | -8.615850e-47 |
| Msa1238730 | Msa1450980 | 0.800311 | 1.529936e-48 | -8.615850e-47 |
| Msa1241820 | Msa1450980 | 0.812158 | 4.879532e-51 | -8.615850e-47 |
| Msa1286680 | Msa1450980 | 0.824558 | 7.563713e-54 | -8.615850e-47 |
| Msa1287360 | Msa1450980 | 0.842895 | 1.954945e-58 | -8.615850e-47 |
| Msa1306190 | Msa1450980 | 0.814308 | 1.646148e-51 | -8.615850e-47 |
| Msa1306200 | Msa1450980 | 0.842746 | 2.142488e-58 | -8.615850e-47 |
| Msa1334650 | Msa1450980 | 0.835912 | 1.272966e-56 | -8.615850e-47 |
| Msa0375430 | Msa1450980 | 0.801766 | 7.710351e-49 | -8.615850e-47 |
| Msa0377280 | Msa1450980 | 0.801403 | 9.155857e-49 | -8.615850e-47 |
| Msa0380430 | Msa1450980 | 0.815196 | 1.046397e-51 | -8.615850e-47 |
| Msa0401340 | Msa1450980 | 0.814358 | 1.604838e-51 | -8.615850e-47 |
| Msa0404690 | Msa1450980 | 0.800968 | 1.123549e-48 | -8.615850e-47 |
| Msa0421800 | Msa1450980 | 0.804678 | 1.924629e-49 | -8.615850e-47 |
| Msa0448080 | Msa1450980 | 0.834782 | 2.456028e-56 | -8.615850e-47 |
| Msa0448120 | Msa1450980 | 0.828843 | 7.177185e-55 | -8.615850e-47 |
| Msa0456480 | Msa1450980 | 0.809213 | 2.115068e-50 | -8.615850e-47 |
| Msa1033160 | Msa1450980 | 0.801981 | 6.965756e-49 | -8.615850e-47 |
| Msa1044040 | Msa1450980 | 0.807809 | 4.215311e-50 | -8.615850e-47 |
| Msa1053690 | Msa1450980 | 0.810185 | 1.307192e-50 | -8.615850e-47 |
| Msa1055360 | Msa1450980 | 0.802941 | 4.417393e-49 | -8.615850e-47 |
| Msa1083740 | Msa1450980 | -0.807647 | 4.564000e-50 | -8.615850e-47 |
| Msa0242290 | Msa1450980 | 0.820246 | 7.591209e-53 | -8.615850e-47 |
| Msa0259330 | Msa1450980 | 0.803629 | 3.181731e-49 | -8.615850e-47 |
| Msa0260190 | Msa1450980 | 0.808621 | 2.831065e-50 | -8.615850e-47 |
| Msa0302650 | Msa1450980 | 0.809480 | 1.852881e-50 | -8.615850e-47 |
| Msa0323630 | Msa1450980 | 0.809357 | 1.968975e-50 | -8.615850e-47 |
| Msa0336270 | Msa1450980 | 0.804498 | 2.098554e-49 | -8.615850e-47 |
| Msa0357380 | Msa1450980 | 0.806427 | 8.268472e-50 | -8.615850e-47 |
| Msa0357390 | Msa1450980 | 0.805362 | 1.385006e-49 | -8.615850e-47 |
| Msa1115580 | Msa1450980 | 0.815433 | 9.266297e-52 | -8.615850e-47 |
| Msa1131420 | Msa1450980 | 0.979839 | 7.410438e-149 | -8.615850e-47 |
| Msa1134560 | Msa1450980 | 0.814492 | 1.498581e-51 | -8.615850e-47 |
| Msa1177620 | Msa1450980 | 0.814271 | 1.677473e-51 | -8.615850e-47 |
| Msa1182830 | Msa1450980 | 0.802316 | 5.945300e-49 | -8.615850e-47 |
| Msa1206760 | Msa1450980 | 0.804004 | 2.660275e-49 | -8.615850e-47 |
| Msa1209020 | Msa1450980 | 0.809436 | 1.894256e-50 | -8.615850e-47 |
| Msa1219370 | Msa1450980 | 0.800411 | 1.459341e-48 | -8.615850e-47 |
| Msa1220740 | Msa1450980 | 0.842630 | 2.299793e-58 | -8.615850e-47 |
| Msa0486530 | Msa1450980 | 0.804514 | 2.082312e-49 | -8.615850e-47 |
| Msa0545230 | Msa1450980 | 0.812449 | 4.215464e-51 | -8.615850e-47 |
| Msa0568610 | Msa1450980 | 0.812651 | 3.808850e-51 | -8.615850e-47 |
| Msa0579340 | Msa1450980 | 0.878232 | 3.317332e-69 | -8.615850e-47 |
| Msa0600820 | Msa1450980 | 0.810349 | 1.204663e-50 | -8.615850e-47 |
| Msa0863760 | Msa1450980 | 0.815476 | 9.067659e-52 | -8.615850e-47 |
| Msa0899700 | Msa1450980 | 0.817709 | 2.864491e-52 | -8.615850e-47 |
| Msa0934830 | Msa1450980 | 0.817783 | 2.756816e-52 | -8.615850e-47 |
| Msa0971860 | Msa1450980 | 0.829390 | 5.287102e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450980 | MtrunA17_Chr4g0073811 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 2.04e-50 | 152 |
| Msa1450980 | MtrunA17_Chr4g0073821 | 81.333 | 75 | 14 | 0 | 1 | 75 | 1 | 75 | 1.20e-40 | 127 |
| Msa1450980 | MtrunA17_Chr6g0462381 | 57.692 | 52 | 21 | 1 | 5 | 56 | 3 | 53 | 4.54e-14 | 60.1 |
| Msa1450980 | MtrunA17_Chr7g0271271 | 65.217 | 46 | 15 | 1 | 10 | 55 | 8 | 52 | 1.78e-13 | 58.5 |
| Msa1450980 | MtrunA17_Chr7g0271261 | 57.447 | 47 | 19 | 1 | 9 | 55 | 7 | 52 | 6.18e-12 | 54.7 |
| Msa1450980 | MtrunA17_Chr7g0271281 | 56.522 | 46 | 19 | 1 | 10 | 55 | 8 | 52 | 8.21e-12 | 54.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450980 | AT4G30660.1 | 76.712 | 73 | 17 | 0 | 1 | 73 | 1 | 73 | 2.09e-37 | 120 |
| Msa1450980 | AT4G30660.2 | 76.712 | 73 | 17 | 0 | 1 | 73 | 1 | 73 | 2.09e-37 | 120 |
| Msa1450980 | AT4G28088.1 | 70.833 | 72 | 21 | 0 | 1 | 72 | 1 | 72 | 5.93e-36 | 116 |
| Msa1450980 | AT2G24040.1 | 70.833 | 72 | 21 | 0 | 1 | 72 | 1 | 72 | 8.09e-34 | 110 |
| Msa1450980 | AT4G30650.1 | 75.410 | 61 | 15 | 0 | 1 | 61 | 1 | 61 | 1.03e-27 | 95.5 |
| Msa1450980 | AT2G38905.1 | 68.627 | 51 | 15 | 1 | 6 | 56 | 4 | 53 | 3.64e-16 | 65.9 |
| Msa1450980 | AT3G05880.1 | 71.739 | 46 | 12 | 1 | 10 | 55 | 8 | 52 | 6.63e-15 | 62.8 |
| Msa1450980 | AT3G05890.1 | 58.696 | 46 | 18 | 1 | 10 | 55 | 8 | 52 | 6.31e-13 | 57.8 |
| Msa1450980 | AT2G24040.2 | 76.667 | 30 | 7 | 0 | 1 | 30 | 1 | 30 | 4.98e-12 | 55.5 |
Find 28 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGACGTTGGAGTCAATT+TGG | 0.187395 | tig0033155:+13045 | Msa1450980:three_prime_UTR |
| CTATCTGATTGTTGATTGTA+TGG | 0.350406 | tig0033155:+13163 | Msa1450980:three_prime_UTR |
| GTATGATATGAATATTTGAT+TGG | 0.389091 | tig0033155:+13253 | Msa1450980:three_prime_UTR |
| TTCAACTCTTTATTATGTAA+TGG | 0.390988 | tig0033155:+12976 | Msa1450980:three_prime_UTR |
| CGCTGTATTACTCCCTCCAT+TGG | 0.403030 | tig0033155:+12473 | Msa1450980:CDS |
| GTGGCTTATTAATAGACATT+TGG | 0.459610 | tig0033155:+12345 | Msa1450980:five_prime_UTR |
| TAAAGTGGTTAGTTATATTG+TGG | 0.465212 | tig0033155:+13224 | Msa1450980:three_prime_UTR |
| ACAATACTAGGATATATTCC+TGG | 0.469022 | tig0033155:+12831 | Msa1450980:CDS |
| ATTGGTTTATGATAGAGATA+AGG | 0.489530 | tig0033155:+13271 | Msa1450980:three_prime_UTR |
| TGCTTGCTGCTTACAATACT+AGG | 0.494816 | tig0033155:+12819 | Msa1450980:CDS |
| ATTGTAATTCTCATTGACGT+TGG | 0.499163 | tig0033155:+13034 | Msa1450980:three_prime_UTR |
| ATCAAATTATGAAAATAAAG+TGG | 0.499775 | tig0033155:+13209 | Msa1450980:three_prime_UTR |
| CAGATAATTTCACAAGTTGA+AGG | 0.500488 | tig0033155:-12438 | Msa1450980:intergenic |
| GACATTTGGTGAAGATCAGT+TGG | 0.514122 | tig0033155:+12359 | Msa1450980:five_prime_UTR |
| GCTGTATTACTCCCTCCATT+GGG | 0.519016 | tig0033155:+12474 | Msa1450980:CDS |
| AGCCATCAACATCACTTCAT+AGG | 0.526050 | tig0033155:-13308 | Msa1450980:intergenic |
| GTCCTATGAAGTGATGTTGA+TGG | 0.544298 | tig0033155:+13306 | Msa1450980:three_prime_UTR |
| TTGGGTGTTTGTCTTCGCCA+TGG | 0.568247 | tig0033155:+12492 | Msa1450980:CDS |
| TTGTAAGCAGCAAGCAGATG+AGG | 0.568939 | tig0033155:-12812 | Msa1450980:intergenic |
| TAGTATTTGTTTGCATACAA+AGG | 0.574050 | tig0033155:-12921 | Msa1450980:intergenic |
| CATCAACAAGAATAAGCAGA+AGG | 0.602168 | tig0033155:+12388 | Msa1450980:five_prime_UTR |
| AGAGATAAGGTGCTATGAAG+TGG | 0.607967 | tig0033155:+13284 | Msa1450980:three_prime_UTR |
| TGGCGAAGACAAACACCCAA+TGG | 0.619712 | tig0033155:-12489 | Msa1450980:intergenic |
| TACATACAGTGCAGCAACCA+TGG | 0.624485 | tig0033155:-12509 | Msa1450980:intergenic |
| CGAAGACAAACACCCAATGG+AGG | 0.631567 | tig0033155:-12486 | Msa1450980:intergenic |
| AGCAGTACTTTGATGAAGCT+AGG | 0.636728 | tig0033155:+12895 | Msa1450980:CDS |
| GAAGACAAACACCCAATGGA+GGG | 0.640185 | tig0033155:-12485 | Msa1450970:intergenic |
| TAGATAGCATAAATAATACC+AGG | 0.641061 | tig0033155:-12849 | Msa1450970:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAAAAATCATGAAAAAA+TGG | - | tig0033155:12635-12654 | Msa1450980:intergenic | 15.0% |
| !!! | TTTTCATGATTTTTTAGTTA+TGG | + | tig0033155:12637-12656 | Msa1450980:intron | 15.0% |
| !!! | TTTCATGATTTTTTAGTTAT+GGG | + | tig0033155:12638-12657 | Msa1450980:intron | 15.0% |
| !! | AGAAAAAAAAAAAATTCAAG+TGG | - | tig0033155:13009-13028 | Msa1450980:intergenic | 15.0% |
| !! | ATCAAATTATGAAAATAAAG+TGG | + | tig0033155:13209-13228 | Msa1450980:three_prime_UTR | 15.0% |
| !! | ACTAAAAAATCATGAAAAAA+TGG | - | tig0033155:12635-12654 | Msa1450980:intergenic | 15.0% |
| !!! | TTTTCATGATTTTTTAGTTA+TGG | + | tig0033155:12637-12656 | Msa1450980:intron | 15.0% |
| !!! | TTTCATGATTTTTTAGTTAT+GGG | + | tig0033155:12638-12657 | Msa1450980:intron | 15.0% |
| !! | AGAAAAAAAAAAAATTCAAG+TGG | - | tig0033155:13009-13028 | Msa1450980:intergenic | 15.0% |
| !! | ATCAAATTATGAAAATAAAG+TGG | + | tig0033155:13209-13228 | Msa1450980:three_prime_UTR | 15.0% |
| !!! | AATCATGAAAAAATGGATTT+TGG | - | tig0033155:12628-12647 | Msa1450980:intergenic | 20.0% |
| !!! | ATTGATAATTGTATTTATCC+CGG | - | tig0033155:12669-12688 | Msa1450980:intergenic | 20.0% |
| !! | TTCAACTCTTTATTATGTAA+TGG | + | tig0033155:12976-12995 | Msa1450980:three_prime_UTR | 20.0% |
| !! | GTATGATATGAATATTTGAT+TGG | + | tig0033155:13253-13272 | Msa1450980:three_prime_UTR | 20.0% |
| !!! | AATCATGAAAAAATGGATTT+TGG | - | tig0033155:12628-12647 | Msa1450980:intergenic | 20.0% |
| !!! | ATTGATAATTGTATTTATCC+CGG | - | tig0033155:12669-12688 | Msa1450980:intergenic | 20.0% |
| !! | TTCAACTCTTTATTATGTAA+TGG | + | tig0033155:12976-12995 | Msa1450980:three_prime_UTR | 20.0% |
| !! | GTATGATATGAATATTTGAT+TGG | + | tig0033155:13253-13272 | Msa1450980:three_prime_UTR | 20.0% |
| ! | GAAAGAAAGTGAGATTAAAA+AGG | - | tig0033155:12569-12588 | Msa1450980:intergenic | 25.0% |
| ! | AAAGGGAAAAAGAAGTAAAA+GGG | - | tig0033155:12598-12617 | Msa1450980:intergenic | 25.0% |
| ! | AAAAGGGAAAAAGAAGTAAA+AGG | - | tig0033155:12599-12618 | Msa1450980:intergenic | 25.0% |
| ! | TCAATCTCAAATTTATGATG+AGG | + | tig0033155:12684-12703 | Msa1450980:intron | 25.0% |
| ! | ATTGAAATCAAAGTCATTCA+TGG | - | tig0033155:12771-12790 | Msa1450980:intergenic | 25.0% |
| ! | TAGATAGCATAAATAATACC+AGG | - | tig0033155:12852-12871 | Msa1450980:intergenic | 25.0% |
| ! | TAGTATTTGTTTGCATACAA+AGG | - | tig0033155:12924-12943 | Msa1450980:intergenic | 25.0% |
| !! | TAAAGTGGTTAGTTATATTG+TGG | + | tig0033155:13224-13243 | Msa1450980:three_prime_UTR | 25.0% |
| !! | ATTGGTTTATGATAGAGATA+AGG | + | tig0033155:13271-13290 | Msa1450980:three_prime_UTR | 25.0% |
| ! | GAAAGAAAGTGAGATTAAAA+AGG | - | tig0033155:12569-12588 | Msa1450980:intergenic | 25.0% |
| ! | AAAGGGAAAAAGAAGTAAAA+GGG | - | tig0033155:12598-12617 | Msa1450980:intergenic | 25.0% |
| ! | AAAAGGGAAAAAGAAGTAAA+AGG | - | tig0033155:12599-12618 | Msa1450980:intergenic | 25.0% |
| ! | TCAATCTCAAATTTATGATG+AGG | + | tig0033155:12684-12703 | Msa1450980:intron | 25.0% |
| ! | ATTGAAATCAAAGTCATTCA+TGG | - | tig0033155:12771-12790 | Msa1450980:intergenic | 25.0% |
| ! | TAGATAGCATAAATAATACC+AGG | - | tig0033155:12852-12871 | Msa1450980:intergenic | 25.0% |
| ! | TAGTATTTGTTTGCATACAA+AGG | - | tig0033155:12924-12943 | Msa1450980:intergenic | 25.0% |
| !! | TAAAGTGGTTAGTTATATTG+TGG | + | tig0033155:13224-13243 | Msa1450980:three_prime_UTR | 25.0% |
| !! | ATTGGTTTATGATAGAGATA+AGG | + | tig0033155:13271-13290 | Msa1450980:three_prime_UTR | 25.0% |
| GTGGCTTATTAATAGACATT+TGG | + | tig0033155:12345-12364 | Msa1450980:five_prime_UTR | 30.0% | |
| ! | CAGATAATTTCACAAGTTGA+AGG | - | tig0033155:12441-12460 | Msa1450980:intergenic | 30.0% |
| AAGGGAAAAAGAAGTAAAAG+GGG | - | tig0033155:12597-12616 | Msa1450980:intergenic | 30.0% | |
| ! | TGGATTTTGGATGTGAAAAA+GGG | - | tig0033155:12615-12634 | Msa1450980:intergenic | 30.0% |
| ! | ATGGATTTTGGATGTGAAAA+AGG | - | tig0033155:12616-12635 | Msa1450980:intergenic | 30.0% |
| !!! | TTTTTAGTTATGGGTCAAAC+CGG | + | tig0033155:12647-12666 | Msa1450980:intron | 30.0% |
| ACAATACTAGGATATATTCC+TGG | + | tig0033155:12831-12850 | Msa1450980:CDS | 30.0% | |
| ATTGTAATTCTCATTGACGT+TGG | + | tig0033155:13034-13053 | Msa1450980:three_prime_UTR | 30.0% | |
| !! | TTAGACTTTTAGTTGAGAAC+AGG | + | tig0033155:13095-13114 | Msa1450980:three_prime_UTR | 30.0% |
| ! | CTATCTGATTGTTGATTGTA+TGG | + | tig0033155:13163-13182 | Msa1450980:three_prime_UTR | 30.0% |
| GTGGCTTATTAATAGACATT+TGG | + | tig0033155:12345-12364 | Msa1450980:five_prime_UTR | 30.0% | |
| ! | CAGATAATTTCACAAGTTGA+AGG | - | tig0033155:12441-12460 | Msa1450980:intergenic | 30.0% |
| AAGGGAAAAAGAAGTAAAAG+GGG | - | tig0033155:12597-12616 | Msa1450980:intergenic | 30.0% | |
| ! | TGGATTTTGGATGTGAAAAA+GGG | - | tig0033155:12615-12634 | Msa1450980:intergenic | 30.0% |
| ! | ATGGATTTTGGATGTGAAAA+AGG | - | tig0033155:12616-12635 | Msa1450980:intergenic | 30.0% |
| !!! | TTTTTAGTTATGGGTCAAAC+CGG | + | tig0033155:12647-12666 | Msa1450980:intron | 30.0% |
| ACAATACTAGGATATATTCC+TGG | + | tig0033155:12831-12850 | Msa1450980:CDS | 30.0% | |
| ATTGTAATTCTCATTGACGT+TGG | + | tig0033155:13034-13053 | Msa1450980:three_prime_UTR | 30.0% | |
| !! | TTAGACTTTTAGTTGAGAAC+AGG | + | tig0033155:13095-13114 | Msa1450980:three_prime_UTR | 30.0% |
| ! | CTATCTGATTGTTGATTGTA+TGG | + | tig0033155:13163-13182 | Msa1450980:three_prime_UTR | 30.0% |
| CATCAACAAGAATAAGCAGA+AGG | + | tig0033155:12388-12407 | Msa1450980:five_prime_UTR | 35.0% | |
| !! | TTTTAGTTATGGGTCAAACC+GGG | + | tig0033155:12648-12667 | Msa1450980:intron | 35.0% |
| CATCAACAAGAATAAGCAGA+AGG | + | tig0033155:12388-12407 | Msa1450980:five_prime_UTR | 35.0% | |
| !! | TTTTAGTTATGGGTCAAACC+GGG | + | tig0033155:12648-12667 | Msa1450980:intron | 35.0% |
| ! | GACATTTGGTGAAGATCAGT+TGG | + | tig0033155:12359-12378 | Msa1450980:five_prime_UTR | 40.0% |
| ! | TGCTTGCTGCTTACAATACT+AGG | + | tig0033155:12819-12838 | Msa1450980:CDS | 40.0% |
| AGCAGTACTTTGATGAAGCT+AGG | + | tig0033155:12895-12914 | Msa1450980:CDS | 40.0% | |
| CATTGACGTTGGAGTCAATT+TGG | + | tig0033155:13045-13064 | Msa1450980:three_prime_UTR | 40.0% | |
| ! | AGAGATAAGGTGCTATGAAG+TGG | + | tig0033155:13284-13303 | Msa1450980:three_prime_UTR | 40.0% |
| GTCCTATGAAGTGATGTTGA+TGG | + | tig0033155:13306-13325 | Msa1450980:three_prime_UTR | 40.0% | |
| ! | GACATTTGGTGAAGATCAGT+TGG | + | tig0033155:12359-12378 | Msa1450980:five_prime_UTR | 40.0% |
| ! | TGCTTGCTGCTTACAATACT+AGG | + | tig0033155:12819-12838 | Msa1450980:CDS | 40.0% |
| AGCAGTACTTTGATGAAGCT+AGG | + | tig0033155:12895-12914 | Msa1450980:CDS | 40.0% | |
| CATTGACGTTGGAGTCAATT+TGG | + | tig0033155:13045-13064 | Msa1450980:three_prime_UTR | 40.0% | |
| ! | AGAGATAAGGTGCTATGAAG+TGG | + | tig0033155:13284-13303 | Msa1450980:three_prime_UTR | 40.0% |
| GCTGTATTACTCCCTCCATT+GGG | + | tig0033155:12474-12493 | Msa1450980:CDS | 45.0% | |
| GAAGACAAACACCCAATGGA+GGG | - | tig0033155:12488-12507 | Msa1450980:intergenic | 45.0% | |
| TACATACAGTGCAGCAACCA+TGG | - | tig0033155:12512-12531 | Msa1450980:intergenic | 45.0% | |
| TTGTAAGCAGCAAGCAGATG+AGG | - | tig0033155:12815-12834 | Msa1450980:intergenic | 45.0% | |
| GCTGTATTACTCCCTCCATT+GGG | + | tig0033155:12474-12493 | Msa1450980:CDS | 45.0% | |
| GAAGACAAACACCCAATGGA+GGG | - | tig0033155:12488-12507 | Msa1450980:intergenic | 45.0% | |
| TACATACAGTGCAGCAACCA+TGG | - | tig0033155:12512-12531 | Msa1450980:intergenic | 45.0% | |
| TTGTAAGCAGCAAGCAGATG+AGG | - | tig0033155:12815-12834 | Msa1450980:intergenic | 45.0% | |
| CGCTGTATTACTCCCTCCAT+TGG | + | tig0033155:12473-12492 | Msa1450980:CDS | 50.0% | |
| CGAAGACAAACACCCAATGG+AGG | - | tig0033155:12489-12508 | Msa1450980:intergenic | 50.0% | |
| TGGCGAAGACAAACACCCAA+TGG | - | tig0033155:12492-12511 | Msa1450980:intergenic | 50.0% | |
| TTGGGTGTTTGTCTTCGCCA+TGG | + | tig0033155:12492-12511 | Msa1450980:CDS | 50.0% | |
| CGCTGTATTACTCCCTCCAT+TGG | + | tig0033155:12473-12492 | Msa1450980:CDS | 50.0% | |
| CGAAGACAAACACCCAATGG+AGG | - | tig0033155:12489-12508 | Msa1450980:intergenic | 50.0% | |
| TGGCGAAGACAAACACCCAA+TGG | - | tig0033155:12492-12511 | Msa1450980:intergenic | 50.0% | |
| TTGGGTGTTTGTCTTCGCCA+TGG | + | tig0033155:12492-12511 | Msa1450980:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033155 | gene | 12345 | 13327 | 12345 | ID=Msa1450980;Name=Msa1450980 |
| tig0033155 | mRNA | 12345 | 13327 | 12345 | ID=Msa1450980-mRNA-1;Parent=Msa1450980;Name=Msa1450980-mRNA-1;_AED=0.27;_eAED=0.27;_QI=90|1|1|1|1|1|2|383|76 |
| tig0033155 | exon | 12345 | 12524 | 12345 | ID=Msa1450980-mRNA-1:exon:17762;Parent=Msa1450980-mRNA-1 |
| tig0033155 | exon | 12804 | 13327 | 12804 | ID=Msa1450980-mRNA-1:exon:17763;Parent=Msa1450980-mRNA-1 |
| tig0033155 | five_prime_UTR | 12345 | 12434 | 12345 | ID=Msa1450980-mRNA-1:five_prime_utr;Parent=Msa1450980-mRNA-1 |
| tig0033155 | CDS | 12435 | 12524 | 12435 | ID=Msa1450980-mRNA-1:cds;Parent=Msa1450980-mRNA-1 |
| tig0033155 | CDS | 12804 | 12944 | 12804 | ID=Msa1450980-mRNA-1:cds;Parent=Msa1450980-mRNA-1 |
| tig0033155 | three_prime_UTR | 12945 | 13327 | 12945 | ID=Msa1450980-mRNA-1:three_prime_utr;Parent=Msa1450980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
