Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221290 | AES92349.2 | 97.719 | 263 | 6 | 0 | 18 | 280 | 13 | 275 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221290 | sp|Q38910|XTH23_ARATH | 70.863 | 278 | 65 | 1 | 19 | 280 | 9 | 286 | 1.96e-149 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608050 | Msa1221290 | 0.807068 | 6.053831e-50 | -8.615850e-47 |
| Msa0608060 | Msa1221290 | 0.820008 | 8.605310e-53 | -8.615850e-47 |
| Msa0648440 | Msa1221290 | 0.823907 | 1.075853e-53 | -8.615850e-47 |
| Msa0719740 | Msa1221290 | 0.842650 | 2.271241e-58 | -8.615850e-47 |
| Msa0802750 | Msa1221290 | 0.844209 | 8.711945e-59 | -8.615850e-47 |
| Msa0841060 | Msa1221290 | 0.854878 | 9.179330e-62 | -8.615850e-47 |
| Msa0192470 | Msa1221290 | 0.807584 | 4.707668e-50 | -8.615850e-47 |
| Msa0207680 | Msa1221290 | 0.823012 | 1.741986e-53 | -8.615850e-47 |
| Msa0207690 | Msa1221290 | 0.802590 | 5.219229e-49 | -8.615850e-47 |
| Msa0209360 | Msa1221290 | 0.810033 | 1.409193e-50 | -8.615850e-47 |
| Msa0222460 | Msa1221290 | 0.826555 | 2.543369e-54 | -8.615850e-47 |
| Msa0373060 | Msa1221290 | 0.803048 | 4.198707e-49 | -8.615850e-47 |
| Msa0421580 | Msa1221290 | 0.805807 | 1.117117e-49 | -8.615850e-47 |
| Msa1075320 | Msa1221290 | 0.808743 | 2.666210e-50 | -8.615850e-47 |
| Msa1088160 | Msa1221290 | 0.812118 | 4.980037e-51 | -8.615850e-47 |
| Msa0267400 | Msa1221290 | 0.836443 | 9.331099e-57 | -8.615850e-47 |
| Msa0272840 | Msa1221290 | 0.800500 | 1.399845e-48 | -8.615850e-47 |
| Msa0301750 | Msa1221290 | 0.820790 | 5.694530e-53 | -8.615850e-47 |
| Msa1116610 | Msa1221290 | 0.820664 | 6.087125e-53 | -8.615850e-47 |
| Msa1162750 | Msa1221290 | 0.857941 | 1.158240e-62 | -8.615850e-47 |
| Msa1200270 | Msa1221290 | 0.844257 | 8.458193e-59 | -8.615850e-47 |
| Msa1200290 | Msa1221290 | 0.825122 | 5.566588e-54 | -8.615850e-47 |
| Msa1221290 | Msa1221300 | 0.810668 | 1.027956e-50 | -8.615850e-47 |
| Msa1221290 | Msa1221310 | 0.821230 | 4.508978e-53 | -8.615850e-47 |
| Msa1221290 | Msa1265290 | 0.815155 | 1.068581e-51 | -8.615850e-47 |
| Msa1221290 | Msa1337450 | 0.909780 | 3.901567e-82 | -8.615850e-47 |
| Msa1221290 | Msa1337460 | 0.832246 | 1.054796e-55 | -8.615850e-47 |
| Msa1221290 | Msa1432830 | 0.810573 | 1.078073e-50 | -8.615850e-47 |
| Msa0510120 | Msa1221290 | 0.805400 | 1.359445e-49 | -8.615850e-47 |
| Msa0559660 | Msa1221290 | 0.804700 | 1.904961e-49 | -8.615850e-47 |
| Msa0581370 | Msa1221290 | 0.933908 | 9.137252e-96 | -8.615850e-47 |
| Msa0581380 | Msa1221290 | 0.832362 | 9.872743e-56 | -8.615850e-47 |
| Msa0930210 | Msa1221290 | 0.808663 | 2.772477e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221290 | MtrunA17_Chr7g0258911 | 79.336 | 271 | 42 | 1 | 21 | 277 | 9 | 279 | 3.36e-163 | 454 |
| Msa1221290 | MtrunA17_Chr4g0072611 | 78.598 | 271 | 44 | 1 | 21 | 277 | 10 | 280 | 1.31e-160 | 447 |
| Msa1221290 | MtrunA17_Chr4g0072671 | 80.899 | 267 | 33 | 1 | 32 | 280 | 22 | 288 | 2.09e-157 | 439 |
| Msa1221290 | MtrunA17_Chr4g0072601 | 69.928 | 276 | 68 | 2 | 18 | 279 | 11 | 285 | 3.68e-145 | 409 |
| Msa1221290 | MtrunA17_Chr4g0071341 | 71.536 | 267 | 61 | 1 | 27 | 278 | 16 | 282 | 4.48e-142 | 400 |
| Msa1221290 | MtrunA17_Chr2g0299061 | 68.100 | 279 | 70 | 1 | 21 | 280 | 11 | 289 | 4.48e-141 | 398 |
| Msa1221290 | MtrunA17_Chr3g0122021 | 70.149 | 268 | 71 | 2 | 18 | 277 | 11 | 277 | 9.89e-138 | 389 |
| Msa1221290 | MtrunA17_Chr3g0122031 | 70.149 | 268 | 71 | 2 | 18 | 277 | 11 | 277 | 1.53e-137 | 389 |
| Msa1221290 | MtrunA17_Chr8g0377841 | 69.259 | 270 | 72 | 2 | 18 | 278 | 15 | 282 | 6.59e-137 | 387 |
| Msa1221290 | MtrunA17_Chr4g0072681 | 70.325 | 246 | 51 | 2 | 57 | 280 | 1 | 246 | 1.05e-124 | 355 |
| Msa1221290 | MtrunA17_Chr8g0389641 | 64.662 | 266 | 65 | 2 | 15 | 280 | 9 | 245 | 1.89e-123 | 352 |
| Msa1221290 | MtrunA17_Chr5g0443391 | 52.107 | 261 | 116 | 1 | 26 | 277 | 18 | 278 | 8.61e-99 | 291 |
| Msa1221290 | MtrunA17_Chr6g0486581 | 51.613 | 279 | 114 | 4 | 18 | 277 | 7 | 283 | 1.73e-97 | 288 |
| Msa1221290 | MtrunA17_Chr3g0096651 | 52.308 | 260 | 113 | 1 | 29 | 277 | 23 | 282 | 2.06e-97 | 288 |
| Msa1221290 | MtrunA17_Chr6g0461761 | 52.688 | 279 | 113 | 4 | 18 | 278 | 11 | 288 | 2.05e-95 | 283 |
| Msa1221290 | MtrunA17_Chr6g0461731 | 51.971 | 279 | 115 | 4 | 18 | 278 | 34 | 311 | 7.00e-95 | 282 |
| Msa1221290 | MtrunA17_Chr7g0252631 | 54.086 | 257 | 102 | 3 | 36 | 277 | 32 | 287 | 2.52e-94 | 280 |
| Msa1221290 | MtrunA17_Chr7g0252621 | 54.086 | 257 | 102 | 3 | 36 | 277 | 32 | 287 | 4.79e-94 | 279 |
| Msa1221290 | MtrunA17_Chr7g0252601 | 53.696 | 257 | 103 | 4 | 36 | 277 | 32 | 287 | 3.56e-93 | 277 |
| Msa1221290 | MtrunA17_Chr2g0323161 | 47.535 | 284 | 123 | 5 | 18 | 278 | 7 | 287 | 2.84e-91 | 272 |
| Msa1221290 | MtrunA17_Chr4g0054451 | 49.455 | 275 | 122 | 6 | 18 | 277 | 17 | 289 | 8.82e-91 | 271 |
| Msa1221290 | MtrunA17_Chr4g0054431 | 49.807 | 259 | 114 | 4 | 34 | 277 | 30 | 287 | 8.14e-90 | 268 |
| Msa1221290 | MtrunA17_Chr4g0023961 | 46.918 | 292 | 128 | 6 | 11 | 278 | 1 | 289 | 1.78e-89 | 268 |
| Msa1221290 | MtrunA17_Chr1g0206681 | 48.000 | 275 | 127 | 2 | 20 | 278 | 18 | 292 | 2.34e-89 | 267 |
| Msa1221290 | MtrunA17_Chr1g0206081 | 46.207 | 290 | 127 | 6 | 19 | 280 | 9 | 297 | 1.88e-83 | 252 |
| Msa1221290 | MtrunA17_Chr4g0072641 | 98.261 | 115 | 2 | 0 | 166 | 280 | 37 | 151 | 2.24e-81 | 242 |
| Msa1221290 | MtrunA17_Chr8g0390201 | 54.359 | 195 | 71 | 2 | 101 | 277 | 15 | 209 | 6.07e-73 | 223 |
| Msa1221290 | MtrunA17_Chr8g0340001 | 48.230 | 226 | 100 | 4 | 67 | 277 | 8 | 231 | 1.72e-70 | 217 |
| Msa1221290 | MtrunA17_Chr7g0264731 | 40.000 | 270 | 137 | 7 | 29 | 279 | 30 | 293 | 2.22e-60 | 193 |
| Msa1221290 | MtrunA17_Chr1g0180451 | 40.840 | 262 | 130 | 9 | 35 | 277 | 39 | 294 | 3.99e-57 | 185 |
| Msa1221290 | MtrunA17_Chr4g0028221 | 42.366 | 262 | 126 | 8 | 35 | 277 | 49 | 304 | 1.19e-56 | 184 |
| Msa1221290 | MtrunA17_Chr2g0303861 | 40.684 | 263 | 125 | 9 | 36 | 279 | 29 | 279 | 3.88e-56 | 182 |
| Msa1221290 | MtrunA17_Chr8g0375981 | 36.260 | 262 | 147 | 4 | 36 | 278 | 31 | 291 | 1.47e-55 | 182 |
| Msa1221290 | MtrunA17_Chr2g0327411 | 41.667 | 264 | 126 | 10 | 35 | 277 | 53 | 309 | 3.45e-55 | 180 |
| Msa1221290 | MtrunA17_Chr7g0235541 | 46.798 | 203 | 84 | 6 | 83 | 265 | 1 | 199 | 4.48e-54 | 174 |
| Msa1221290 | MtrunA17_Chr2g0303721 | 40.078 | 257 | 124 | 8 | 36 | 274 | 30 | 274 | 9.60e-54 | 176 |
| Msa1221290 | MtrunA17_Chr1g0161951 | 37.786 | 262 | 142 | 6 | 36 | 278 | 33 | 292 | 3.46e-51 | 171 |
| Msa1221290 | MtrunA17_Chr5g0410621 | 34.211 | 266 | 149 | 7 | 36 | 277 | 42 | 305 | 2.10e-47 | 161 |
| Msa1221290 | MtrunA17_Chr8g0365231 | 34.981 | 263 | 144 | 6 | 40 | 277 | 50 | 310 | 4.52e-47 | 159 |
| Msa1221290 | MtrunA17_Chr8g0382041 | 32.830 | 265 | 153 | 7 | 36 | 278 | 34 | 295 | 2.34e-43 | 150 |
| Msa1221290 | MtrunA17_Chr4g0072631 | 95.455 | 66 | 3 | 0 | 18 | 83 | 13 | 78 | 9.34e-40 | 134 |
| Msa1221290 | MtrunA17_Chr8g0374231 | 40.952 | 105 | 45 | 3 | 192 | 280 | 1 | 104 | 5.18e-19 | 80.5 |
| Msa1221290 | MtrunA17_Chr8g0390181 | 47.727 | 88 | 42 | 2 | 18 | 103 | 8 | 93 | 9.23e-18 | 76.6 |
| Msa1221290 | MtrunA17_Chr8g0350711 | 31.609 | 174 | 111 | 4 | 58 | 229 | 54 | 221 | 2.60e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221290 | AT4G25810.1 | 70.863 | 278 | 65 | 1 | 19 | 280 | 9 | 286 | 1.99e-150 | 422 |
| Msa1221290 | AT5G57560.1 | 69.203 | 276 | 68 | 1 | 22 | 280 | 9 | 284 | 8.63e-147 | 413 |
| Msa1221290 | AT4G30270.1 | 71.103 | 263 | 73 | 1 | 21 | 280 | 6 | 268 | 8.54e-146 | 410 |
| Msa1221290 | AT5G57550.1 | 66.548 | 281 | 77 | 2 | 14 | 277 | 2 | 282 | 1.32e-142 | 402 |
| Msa1221290 | AT5G57530.1 | 69.231 | 260 | 66 | 1 | 32 | 277 | 23 | 282 | 4.33e-134 | 381 |
| Msa1221290 | AT5G57540.1 | 68.726 | 259 | 67 | 1 | 33 | 277 | 23 | 281 | 3.35e-133 | 379 |
| Msa1221290 | AT4G25820.1 | 66.792 | 265 | 74 | 1 | 27 | 277 | 21 | 285 | 2.67e-132 | 376 |
| Msa1221290 | AT5G48070.1 | 60.662 | 272 | 96 | 2 | 18 | 278 | 11 | 282 | 1.71e-128 | 366 |
| Msa1221290 | AT2G18800.1 | 60.764 | 288 | 86 | 3 | 19 | 279 | 11 | 298 | 5.38e-128 | 366 |
| Msa1221290 | AT4G14130.1 | 61.511 | 278 | 92 | 1 | 18 | 280 | 10 | 287 | 1.54e-127 | 364 |
| Msa1221290 | AT3G23730.1 | 62.989 | 281 | 85 | 3 | 18 | 280 | 10 | 289 | 5.39e-127 | 363 |
| Msa1221290 | AT4G30290.1 | 63.235 | 272 | 88 | 3 | 18 | 278 | 7 | 277 | 1.58e-122 | 351 |
| Msa1221290 | AT4G30280.1 | 61.765 | 272 | 92 | 3 | 18 | 278 | 12 | 282 | 3.59e-120 | 345 |
| Msa1221290 | AT1G65310.2 | 63.424 | 257 | 83 | 2 | 33 | 278 | 48 | 304 | 3.85e-119 | 343 |
| Msa1221290 | AT1G65310.1 | 63.424 | 257 | 83 | 2 | 33 | 278 | 26 | 282 | 5.11e-119 | 342 |
| Msa1221290 | AT4G28850.1 | 50.182 | 275 | 116 | 3 | 23 | 278 | 16 | 288 | 1.70e-96 | 286 |
| Msa1221290 | AT5G13870.2 | 55.253 | 257 | 99 | 3 | 36 | 277 | 32 | 287 | 1.17e-94 | 281 |
| Msa1221290 | AT5G13870.1 | 55.253 | 257 | 99 | 3 | 36 | 277 | 32 | 287 | 1.17e-94 | 281 |
| Msa1221290 | AT5G13870.3 | 55.253 | 257 | 99 | 3 | 36 | 277 | 32 | 287 | 1.17e-94 | 281 |
| Msa1221290 | AT5G65730.1 | 45.578 | 294 | 142 | 6 | 2 | 279 | 1 | 292 | 1.90e-92 | 275 |
| Msa1221290 | AT2G06850.1 | 53.307 | 257 | 104 | 3 | 36 | 277 | 35 | 290 | 7.78e-91 | 271 |
| Msa1221290 | AT4G37800.1 | 47.482 | 278 | 128 | 5 | 19 | 279 | 15 | 291 | 1.93e-88 | 265 |
| Msa1221290 | AT4G03210.1 | 45.520 | 279 | 132 | 4 | 16 | 277 | 9 | 284 | 1.46e-87 | 263 |
| Msa1221290 | AT2G06850.2 | 55.507 | 227 | 85 | 3 | 66 | 277 | 5 | 230 | 2.13e-85 | 255 |
| Msa1221290 | AT2G14620.1 | 44.218 | 294 | 146 | 4 | 2 | 278 | 3 | 295 | 3.95e-85 | 257 |
| Msa1221290 | AT1G11545.1 | 46.127 | 284 | 131 | 5 | 18 | 280 | 20 | 302 | 4.54e-84 | 254 |
| Msa1221290 | AT4G03210.2 | 51.477 | 237 | 94 | 4 | 58 | 277 | 24 | 256 | 5.12e-83 | 250 |
| Msa1221290 | AT4G13090.1 | 45.196 | 281 | 131 | 6 | 18 | 277 | 10 | 288 | 7.77e-79 | 241 |
| Msa1221290 | AT2G14620.2 | 50.218 | 229 | 96 | 4 | 67 | 278 | 18 | 245 | 1.29e-75 | 231 |
| Msa1221290 | AT3G25050.1 | 45.174 | 259 | 121 | 5 | 36 | 277 | 35 | 289 | 3.57e-75 | 231 |
| Msa1221290 | AT4G13080.1 | 45.703 | 256 | 122 | 5 | 36 | 277 | 39 | 291 | 1.47e-74 | 230 |
| Msa1221290 | AT2G14620.3 | 50.909 | 220 | 90 | 4 | 76 | 278 | 16 | 234 | 1.05e-73 | 226 |
| Msa1221290 | AT2G36870.1 | 41.221 | 262 | 129 | 7 | 35 | 277 | 42 | 297 | 4.97e-58 | 187 |
| Msa1221290 | AT3G44990.1 | 40.996 | 261 | 129 | 8 | 36 | 277 | 39 | 293 | 6.03e-56 | 182 |
| Msa1221290 | AT1G32170.1 | 34.962 | 266 | 149 | 6 | 35 | 278 | 31 | 294 | 6.75e-51 | 171 |
| Msa1221290 | AT1G14720.1 | 32.877 | 292 | 165 | 6 | 18 | 280 | 4 | 293 | 7.68e-51 | 170 |
| Msa1221290 | AT2G01850.1 | 32.877 | 292 | 165 | 6 | 18 | 280 | 4 | 293 | 9.55e-51 | 170 |
| Msa1221290 | AT1G10550.1 | 35.769 | 260 | 136 | 6 | 47 | 277 | 52 | 309 | 1.19e-47 | 161 |
| Msa1221290 | AT3G48580.1 | 36.078 | 255 | 133 | 8 | 35 | 277 | 37 | 273 | 1.28e-44 | 152 |
| Msa1221290 | AT4G18990.1 | 32.463 | 268 | 146 | 6 | 44 | 278 | 48 | 313 | 2.12e-42 | 149 |
| Msa1221290 | AT3G48580.3 | 35.268 | 224 | 120 | 6 | 66 | 277 | 4 | 214 | 1.90e-39 | 137 |
| Msa1221290 | AT4G18990.2 | 33.000 | 200 | 102 | 5 | 109 | 278 | 42 | 239 | 1.63e-34 | 126 |
| Msa1221290 | AT2G36870.2 | 45.324 | 139 | 66 | 3 | 35 | 165 | 42 | 178 | 7.22e-33 | 119 |
| Msa1221290 | AT3G48580.2 | 30.980 | 255 | 126 | 9 | 35 | 277 | 37 | 253 | 9.42e-28 | 108 |
Find 63 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTCATTGGTTGATTCTT+TGG | 0.185511 | 8_1:-84854442 | None:intergenic |
| ATGTTCTTGAATTCTCTTAT+TGG | 0.197118 | 8_1:-84854397 | None:intergenic |
| CTCGACAAAGCCTCTGGTTC+TGG | 0.236949 | 8_1:+84853813 | Msa1221290:CDS |
| TTCACACCTACTCCATTCTT+TGG | 0.237903 | 8_1:+84854200 | Msa1221290:CDS |
| TGAAATTGACTTTGAATTCT+TGG | 0.248522 | 8_1:+84854072 | Msa1221290:CDS |
| TGTCATCAAAAGGATCAAAT+TGG | 0.258251 | 8_1:+84854047 | Msa1221290:CDS |
| CTCCATTCACTGCATCTTAT+AGG | 0.269112 | 8_1:+84854536 | Msa1221290:CDS |
| GAGAGCAACAATTCCATCTT+TGG | 0.288359 | 8_1:+84854158 | Msa1221290:CDS |
| GAAATTGACTTTGAATTCTT+GGG | 0.327454 | 8_1:+84854073 | Msa1221290:CDS |
| CTGTCCTCTTATCTCTATAT+TGG | 0.328481 | 8_1:+84853674 | Msa1221290:CDS |
| GCCAAAGAGATATTCATTCT+TGG | 0.330231 | 8_1:-84853844 | None:intergenic |
| TGAGGATATACTCAAGTCTA+TGG | 0.355078 | 8_1:+84854458 | Msa1221290:CDS |
| TCCAAGAATGAATATCTCTT+TGG | 0.372292 | 8_1:+84853843 | Msa1221290:CDS |
| AGAGATATTCATTCTTGGAT+TGG | 0.408705 | 8_1:-84853839 | None:intergenic |
| TGGCTACCACATGCTGCTGA+AGG | 0.414630 | 8_1:+84853053 | None:intergenic |
| GGTTACGTACTAATAAGAAC+AGG | 0.430356 | 8_1:-84853084 | None:intergenic |
| AGACTTGAGTATATCCTCAT+TGG | 0.432038 | 8_1:-84854454 | None:intergenic |
| GTCTATGGAATGCTGATGAT+TGG | 0.434923 | 8_1:+84854473 | Msa1221290:CDS |
| TTGACCGTTGTCGAGTATCT+TGG | 0.435436 | 8_1:-84853775 | None:intergenic |
| GTCATCAAAAGGATCAAATT+GGG | 0.451206 | 8_1:+84854048 | Msa1221290:CDS |
| CTTTCCCTCGACAAAGCCTC+TGG | 0.461846 | 8_1:+84853807 | Msa1221290:CDS |
| GGCATGCAGTTGTCATCAAA+AGG | 0.488525 | 8_1:+84854037 | Msa1221290:intron |
| GAATTCTTGGGGAATGTAAG+TGG | 0.491509 | 8_1:+84854085 | Msa1221290:CDS |
| TTCAAGAACATGGAATCAAA+AGG | 0.493604 | 8_1:+84854409 | Msa1221290:CDS |
| CAGTTGGATCAAACCAAAGA+TGG | 0.493971 | 8_1:-84854171 | None:intergenic |
| AAAACCAATATAGAGATAAG+AGG | 0.499046 | 8_1:-84853678 | None:intergenic |
| ACAGTGCCTGCAGAATTTCC+AGG | 0.499070 | 8_1:-84853894 | None:intergenic |
| TTCCTATAAGATGCAGTGAA+TGG | 0.501342 | 8_1:-84854538 | None:intergenic |
| GCGGTCTTGTCAAGACAGAT+TGG | 0.512024 | 8_1:+84854506 | Msa1221290:CDS |
| TTCATTACAACATATGCAGC+AGG | 0.518113 | 8_1:+84853708 | Msa1221290:CDS |
| CTTGTACCTGGAAATTCTGC+AGG | 0.520832 | 8_1:+84853888 | Msa1221290:CDS |
| AATGTGTTTAGTCAAGGAAA+AGG | 0.525149 | 8_1:+84854130 | Msa1221290:CDS |
| TAGGATGCAGTACACTCTGT+TGG | 0.532635 | 8_1:-84854703 | None:intergenic |
| CACTCTGTTGGAAGGCCTTG+AGG | 0.535478 | 8_1:-84854691 | None:intergenic |
| ATCAGAACTTTGATATAACA+TGG | 0.536100 | 8_1:+84853739 | Msa1221290:CDS |
| TCTATGGAATGCTGATGATT+GGG | 0.538637 | 8_1:+84854474 | Msa1221290:CDS |
| GCGTTGAGGATTCCAAAGAA+TGG | 0.542490 | 8_1:-84854212 | None:intergenic |
| CACACCAATGTGTTTAGTCA+AGG | 0.543031 | 8_1:+84854124 | Msa1221290:CDS |
| AAATTGACTTTGAATTCTTG+GGG | 0.549232 | 8_1:+84854074 | Msa1221290:CDS |
| ACATTGGTGTGAAGAGTGTA+TGG | 0.556406 | 8_1:-84854112 | None:intergenic |
| TTTGATATAACATGGGGAGA+TGG | 0.571234 | 8_1:+84853747 | Msa1221290:CDS |
| ATGCAGCTTAAGCTTGTACC+TGG | 0.579464 | 8_1:+84853876 | Msa1221290:CDS |
| GGCTACCACATGCTGCTGAA+GGG | 0.582673 | 8_1:+84853054 | None:intergenic |
| AGGATTCCAAAGAATGGAGT+AGG | 0.588075 | 8_1:-84854206 | None:intergenic |
| AGACTACTTCATCTAATGCA+TGG | 0.591786 | 8_1:+84854572 | Msa1221290:CDS |
| ATGCAGTACACTCTGTTGGA+AGG | 0.594621 | 8_1:-84854699 | None:intergenic |
| TCAGAACTTTGATATAACAT+GGG | 0.603368 | 8_1:+84853740 | Msa1221290:CDS |
| TGCATATGTTGTAATGAAAG+TGG | 0.604062 | 8_1:-84853703 | None:intergenic |
| TAGGTGTGAAAATCAGCAGT+TGG | 0.604383 | 8_1:-84854187 | None:intergenic |
| AATAAGAGAATTCAAGAACA+TGG | 0.612760 | 8_1:+84854399 | Msa1221290:CDS |
| GATGATTGGGCAACAAGAGG+CGG | 0.625561 | 8_1:+84854487 | Msa1221290:CDS |
| GCTGATGATTGGGCAACAAG+AGG | 0.626727 | 8_1:+84854484 | Msa1221290:CDS |
| CAGAACCAGAGGCTTTGTCG+AGG | 0.627145 | 8_1:-84853812 | None:intergenic |
| AGAACCAGAGGCTTTGTCGA+GGG | 0.631194 | 8_1:-84853811 | None:intergenic |
| GGATTGGAATCCAGAACCAG+AGG | 0.639024 | 8_1:-84853823 | None:intergenic |
| GGTGCTTACACAATGCGTTG+AGG | 0.644219 | 8_1:-84854226 | None:intergenic |
| TTCCAAAGAATCAACCAATG+AGG | 0.645428 | 8_1:+84854440 | Msa1221290:CDS |
| GACATCAAAAGATTTCCTCA+AGG | 0.653338 | 8_1:+84854676 | Msa1221290:CDS |
| AAGTCAACAAAGATTGAGTG+AGG | 0.654429 | 8_1:+84854618 | Msa1221290:CDS |
| CAGAACTTTGATATAACATG+GGG | 0.655512 | 8_1:+84853741 | Msa1221290:CDS |
| GTTACGTACTAATAAGAACA+GGG | 0.693850 | 8_1:-84853083 | None:intergenic |
| TTACGTACTAATAAGAACAG+GGG | 0.755891 | 8_1:-84853082 | None:intergenic |
| CGTGCCAAGATACTCGACAA+CGG | 0.804801 | 8_1:+84853771 | Msa1221290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTAATTATTTTTACTATA+TGG | + | chr8_1:84854016-84854035 | Msa1221290:intron | 10.0% |
| !!! | TCTTTTAAAAAAAAATCAAT+TGG | + | chr8_1:84854310-84854329 | Msa1221290:intron | 10.0% |
| !!! | TGTTAATTATTTTTACTATA+TGG | + | chr8_1:84854016-84854035 | Msa1221290:intron | 10.0% |
| !!! | TCTTTTAAAAAAAAATCAAT+TGG | + | chr8_1:84854310-84854329 | Msa1221290:intron | 10.0% |
| !!! | TCCATTTTTTCTATTTTTAT+TGG | + | chr8_1:84853221-84853240 | Msa1221290:intron | 15.0% |
| !! | ACCAATAAAAATAGAAAAAA+TGG | - | chr8_1:84853225-84853244 | None:intergenic | 15.0% |
| !! | AAAAACATAATGTTACAAAA+TGG | + | chr8_1:84853280-84853299 | Msa1221290:intron | 15.0% |
| !!! | CCAAGTTTTTTAATTTTAAT+AGG | - | chr8_1:84853403-84853422 | None:intergenic | 15.0% |
| !! | CCTATTAAAATTAAAAAACT+TGG | + | chr8_1:84853400-84853419 | Msa1221290:intron | 15.0% |
| !!! | TCCATTTTTTCTATTTTTAT+TGG | + | chr8_1:84853221-84853240 | Msa1221290:intron | 15.0% |
| !! | ACCAATAAAAATAGAAAAAA+TGG | - | chr8_1:84853225-84853244 | None:intergenic | 15.0% |
| !! | AAAAACATAATGTTACAAAA+TGG | + | chr8_1:84853280-84853299 | Msa1221290:intron | 15.0% |
| !!! | CCAAGTTTTTTAATTTTAAT+AGG | - | chr8_1:84853403-84853422 | None:intergenic | 15.0% |
| !! | CCTATTAAAATTAAAAAACT+TGG | + | chr8_1:84853400-84853419 | Msa1221290:intron | 15.0% |
| !!! | TCGAATGATATTTTAAGTAT+TGG | + | chr8_1:84853360-84853379 | Msa1221290:intron | 20.0% |
| !! | ACTAATATATAAACATGTGA+CGG | + | chr8_1:84854266-84854285 | Msa1221290:intron | 20.0% |
| !!! | TCGAATGATATTTTAAGTAT+TGG | + | chr8_1:84853360-84853379 | Msa1221290:intron | 20.0% |
| !! | ACTAATATATAAACATGTGA+CGG | + | chr8_1:84854266-84854285 | Msa1221290:intron | 20.0% |
| !!! | TACGTAACCTTTTTTTTTAC+AGG | + | chr8_1:84853098-84853117 | Msa1221290:intron | 25.0% |
| !!! | AACCTTTTTTTTTACAGGAA+TGG | + | chr8_1:84853103-84853122 | Msa1221290:intron | 25.0% |
| ! | AACCATTCCTGTAAAAAAAA+AGG | - | chr8_1:84853108-84853127 | None:intergenic | 25.0% |
| !!! | TTTTAAGTATTGGCATTGTT+AGG | + | chr8_1:84853370-84853389 | Msa1221290:intron | 25.0% |
| ! | AGTGAAAATGAAATGTTGAA+GGG | - | chr8_1:84853576-84853595 | None:intergenic | 25.0% |
| ! | TAGTGAAAATGAAATGTTGA+AGG | - | chr8_1:84853577-84853596 | None:intergenic | 25.0% |
| ! | GTGTATGTATATATATAGCT+TGG | - | chr8_1:84853610-84853629 | None:intergenic | 25.0% |
| ! | AAAACCAATATAGAGATAAG+AGG | - | chr8_1:84853681-84853700 | None:intergenic | 25.0% |
| ! | ATCAGAACTTTGATATAACA+TGG | + | chr8_1:84853739-84853758 | Msa1221290:CDS | 25.0% |
| ! | TCAGAACTTTGATATAACAT+GGG | + | chr8_1:84853740-84853759 | Msa1221290:CDS | 25.0% |
| ! | GAAAGTTCAAATTATACTGT+AGG | - | chr8_1:84853974-84853993 | None:intergenic | 25.0% |
| !! | TGAAATTGACTTTGAATTCT+TGG | + | chr8_1:84854072-84854091 | Msa1221290:CDS | 25.0% |
| !! | GAAATTGACTTTGAATTCTT+GGG | + | chr8_1:84854073-84854092 | Msa1221290:CDS | 25.0% |
| !! | AAATTGACTTTGAATTCTTG+GGG | + | chr8_1:84854074-84854093 | Msa1221290:CDS | 25.0% |
| ! | ATGTTCTTGAATTCTCTTAT+TGG | - | chr8_1:84854400-84854419 | None:intergenic | 25.0% |
| ! | AATAAGAGAATTCAAGAACA+TGG | + | chr8_1:84854399-84854418 | Msa1221290:CDS | 25.0% |
| !!! | TACGTAACCTTTTTTTTTAC+AGG | + | chr8_1:84853098-84853117 | Msa1221290:intron | 25.0% |
| !!! | AACCTTTTTTTTTACAGGAA+TGG | + | chr8_1:84853103-84853122 | Msa1221290:intron | 25.0% |
| ! | AACCATTCCTGTAAAAAAAA+AGG | - | chr8_1:84853108-84853127 | None:intergenic | 25.0% |
| !!! | TTTTAAGTATTGGCATTGTT+AGG | + | chr8_1:84853370-84853389 | Msa1221290:intron | 25.0% |
| ! | AGTGAAAATGAAATGTTGAA+GGG | - | chr8_1:84853576-84853595 | None:intergenic | 25.0% |
| ! | TAGTGAAAATGAAATGTTGA+AGG | - | chr8_1:84853577-84853596 | None:intergenic | 25.0% |
| ! | GTGTATGTATATATATAGCT+TGG | - | chr8_1:84853610-84853629 | None:intergenic | 25.0% |
| ! | AAAACCAATATAGAGATAAG+AGG | - | chr8_1:84853681-84853700 | None:intergenic | 25.0% |
| ! | ATCAGAACTTTGATATAACA+TGG | + | chr8_1:84853739-84853758 | Msa1221290:CDS | 25.0% |
| ! | TCAGAACTTTGATATAACAT+GGG | + | chr8_1:84853740-84853759 | Msa1221290:CDS | 25.0% |
| ! | GAAAGTTCAAATTATACTGT+AGG | - | chr8_1:84853974-84853993 | None:intergenic | 25.0% |
| !! | TGAAATTGACTTTGAATTCT+TGG | + | chr8_1:84854072-84854091 | Msa1221290:CDS | 25.0% |
| !! | GAAATTGACTTTGAATTCTT+GGG | + | chr8_1:84854073-84854092 | Msa1221290:CDS | 25.0% |
| !! | AAATTGACTTTGAATTCTTG+GGG | + | chr8_1:84854074-84854093 | Msa1221290:CDS | 25.0% |
| ! | ATGTTCTTGAATTCTCTTAT+TGG | - | chr8_1:84854400-84854419 | None:intergenic | 25.0% |
| ! | AATAAGAGAATTCAAGAACA+TGG | + | chr8_1:84854399-84854418 | Msa1221290:CDS | 25.0% |
| TTACGTACTAATAAGAACAG+GGG | - | chr8_1:84853085-84853104 | None:intergenic | 30.0% | |
| GTTACGTACTAATAAGAACA+GGG | - | chr8_1:84853086-84853105 | None:intergenic | 30.0% | |
| AACTTAATCTAGACCATCAT+TGG | + | chr8_1:84853333-84853352 | Msa1221290:intron | 30.0% | |
| ATCATTCGAAATTCCAATGA+TGG | - | chr8_1:84853349-84853368 | None:intergenic | 30.0% | |
| TTAATATTTGTGCCAACTCA+TGG | + | chr8_1:84853437-84853456 | Msa1221290:intron | 30.0% | |
| AAGATGTGATGAAATGTTGA+AGG | - | chr8_1:84853517-84853536 | None:intergenic | 30.0% | |
| GATAATTGTGGAAGAGAATT+GGG | - | chr8_1:84853554-84853573 | None:intergenic | 30.0% | |
| AAATGTTGAAGGGATAATTG+TGG | - | chr8_1:84853566-84853585 | None:intergenic | 30.0% | |
| TGCATATGTTGTAATGAAAG+TGG | - | chr8_1:84853706-84853725 | None:intergenic | 30.0% | |
| CAGAACTTTGATATAACATG+GGG | + | chr8_1:84853741-84853760 | Msa1221290:CDS | 30.0% | |
| AGAGATATTCATTCTTGGAT+TGG | - | chr8_1:84853842-84853861 | None:intergenic | 30.0% | |
| TCCAAGAATGAATATCTCTT+TGG | + | chr8_1:84853843-84853862 | Msa1221290:CDS | 30.0% | |
| ! | ATACTGTAGGATTAGCATTA+AGG | - | chr8_1:84853961-84853980 | None:intergenic | 30.0% |
| TGTCATCAAAAGGATCAAAT+TGG | + | chr8_1:84854047-84854066 | Msa1221290:CDS | 30.0% | |
| GTCATCAAAAGGATCAAATT+GGG | + | chr8_1:84854048-84854067 | Msa1221290:CDS | 30.0% | |
| ! | TTTTCCTTGACTAAACACAT+TGG | - | chr8_1:84854131-84854150 | None:intergenic | 30.0% |
| AATGTGTTTAGTCAAGGAAA+AGG | + | chr8_1:84854130-84854149 | Msa1221290:CDS | 30.0% | |
| ! | AATTGAATGCAGTTTTTCTG+TGG | + | chr8_1:84854366-84854385 | Msa1221290:intron | 30.0% |
| TTCAAGAACATGGAATCAAA+AGG | + | chr8_1:84854409-84854428 | Msa1221290:CDS | 30.0% | |
| TTACGTACTAATAAGAACAG+GGG | - | chr8_1:84853085-84853104 | None:intergenic | 30.0% | |
| GTTACGTACTAATAAGAACA+GGG | - | chr8_1:84853086-84853105 | None:intergenic | 30.0% | |
| AACTTAATCTAGACCATCAT+TGG | + | chr8_1:84853333-84853352 | Msa1221290:intron | 30.0% | |
| ATCATTCGAAATTCCAATGA+TGG | - | chr8_1:84853349-84853368 | None:intergenic | 30.0% | |
| TTAATATTTGTGCCAACTCA+TGG | + | chr8_1:84853437-84853456 | Msa1221290:intron | 30.0% | |
| AAGATGTGATGAAATGTTGA+AGG | - | chr8_1:84853517-84853536 | None:intergenic | 30.0% | |
| GATAATTGTGGAAGAGAATT+GGG | - | chr8_1:84853554-84853573 | None:intergenic | 30.0% | |
| AAATGTTGAAGGGATAATTG+TGG | - | chr8_1:84853566-84853585 | None:intergenic | 30.0% | |
| TGCATATGTTGTAATGAAAG+TGG | - | chr8_1:84853706-84853725 | None:intergenic | 30.0% | |
| CAGAACTTTGATATAACATG+GGG | + | chr8_1:84853741-84853760 | Msa1221290:CDS | 30.0% | |
| AGAGATATTCATTCTTGGAT+TGG | - | chr8_1:84853842-84853861 | None:intergenic | 30.0% | |
| TCCAAGAATGAATATCTCTT+TGG | + | chr8_1:84853843-84853862 | Msa1221290:CDS | 30.0% | |
| ! | ATACTGTAGGATTAGCATTA+AGG | - | chr8_1:84853961-84853980 | None:intergenic | 30.0% |
| TGTCATCAAAAGGATCAAAT+TGG | + | chr8_1:84854047-84854066 | Msa1221290:CDS | 30.0% | |
| GTCATCAAAAGGATCAAATT+GGG | + | chr8_1:84854048-84854067 | Msa1221290:CDS | 30.0% | |
| ! | TTTTCCTTGACTAAACACAT+TGG | - | chr8_1:84854131-84854150 | None:intergenic | 30.0% |
| AATGTGTTTAGTCAAGGAAA+AGG | + | chr8_1:84854130-84854149 | Msa1221290:CDS | 30.0% | |
| ! | AATTGAATGCAGTTTTTCTG+TGG | + | chr8_1:84854366-84854385 | Msa1221290:intron | 30.0% |
| TTCAAGAACATGGAATCAAA+AGG | + | chr8_1:84854409-84854428 | Msa1221290:CDS | 30.0% | |
| GGTTACGTACTAATAAGAAC+AGG | - | chr8_1:84853087-84853106 | None:intergenic | 35.0% | |
| GTCATGAAAGTTGTCACTAA+TGG | - | chr8_1:84853197-84853216 | None:intergenic | 35.0% | |
| !! | TAAGTATTGGCATTGTTAGG+TGG | + | chr8_1:84853373-84853392 | Msa1221290:intron | 35.0% |
| AATGTTGAAGGAAGAAACAG+AGG | - | chr8_1:84853505-84853524 | None:intergenic | 35.0% | |
| GGATAATTGTGGAAGAGAAT+TGG | - | chr8_1:84853555-84853574 | None:intergenic | 35.0% | |
| ATACACCTTCAAATCAACCA+TGG | + | chr8_1:84853624-84853643 | Msa1221290:intron | 35.0% | |
| CTGTCCTCTTATCTCTATAT+TGG | + | chr8_1:84853674-84853693 | Msa1221290:CDS | 35.0% | |
| TTCATTACAACATATGCAGC+AGG | + | chr8_1:84853708-84853727 | Msa1221290:CDS | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | chr8_1:84853747-84853766 | Msa1221290:CDS | 35.0% | |
| GCCAAAGAGATATTCATTCT+TGG | - | chr8_1:84853847-84853866 | None:intergenic | 35.0% | |
| TTCCAAAGAATCAACCAATG+AGG | + | chr8_1:84854440-84854459 | Msa1221290:CDS | 35.0% | |
| ! | ATCCTCATTGGTTGATTCTT+TGG | - | chr8_1:84854445-84854464 | None:intergenic | 35.0% |
| AGACTTGAGTATATCCTCAT+TGG | - | chr8_1:84854457-84854476 | None:intergenic | 35.0% | |
| TGAGGATATACTCAAGTCTA+TGG | + | chr8_1:84854458-84854477 | Msa1221290:CDS | 35.0% | |
| TCTATGGAATGCTGATGATT+GGG | + | chr8_1:84854474-84854493 | Msa1221290:CDS | 35.0% | |
| TTCCTATAAGATGCAGTGAA+TGG | - | chr8_1:84854541-84854560 | None:intergenic | 35.0% | |
| AGACTACTTCATCTAATGCA+TGG | + | chr8_1:84854572-84854591 | Msa1221290:CDS | 35.0% | |
| ! | TGCATGGTTTTCTCAACAAT+TGG | + | chr8_1:84854588-84854607 | Msa1221290:CDS | 35.0% |
| AAGTCAACAAAGATTGAGTG+AGG | + | chr8_1:84854618-84854637 | Msa1221290:CDS | 35.0% | |
| GACATCAAAAGATTTCCTCA+AGG | + | chr8_1:84854676-84854695 | Msa1221290:CDS | 35.0% | |
| GGTTACGTACTAATAAGAAC+AGG | - | chr8_1:84853087-84853106 | None:intergenic | 35.0% | |
| GTCATGAAAGTTGTCACTAA+TGG | - | chr8_1:84853197-84853216 | None:intergenic | 35.0% | |
| !! | TAAGTATTGGCATTGTTAGG+TGG | + | chr8_1:84853373-84853392 | Msa1221290:intron | 35.0% |
| AATGTTGAAGGAAGAAACAG+AGG | - | chr8_1:84853505-84853524 | None:intergenic | 35.0% | |
| GGATAATTGTGGAAGAGAAT+TGG | - | chr8_1:84853555-84853574 | None:intergenic | 35.0% | |
| ATACACCTTCAAATCAACCA+TGG | + | chr8_1:84853624-84853643 | Msa1221290:intron | 35.0% | |
| CTGTCCTCTTATCTCTATAT+TGG | + | chr8_1:84853674-84853693 | Msa1221290:CDS | 35.0% | |
| TTCATTACAACATATGCAGC+AGG | + | chr8_1:84853708-84853727 | Msa1221290:CDS | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | chr8_1:84853747-84853766 | Msa1221290:CDS | 35.0% | |
| GCCAAAGAGATATTCATTCT+TGG | - | chr8_1:84853847-84853866 | None:intergenic | 35.0% | |
| TTCCAAAGAATCAACCAATG+AGG | + | chr8_1:84854440-84854459 | Msa1221290:CDS | 35.0% | |
| ! | ATCCTCATTGGTTGATTCTT+TGG | - | chr8_1:84854445-84854464 | None:intergenic | 35.0% |
| AGACTTGAGTATATCCTCAT+TGG | - | chr8_1:84854457-84854476 | None:intergenic | 35.0% | |
| TGAGGATATACTCAAGTCTA+TGG | + | chr8_1:84854458-84854477 | Msa1221290:CDS | 35.0% | |
| TCTATGGAATGCTGATGATT+GGG | + | chr8_1:84854474-84854493 | Msa1221290:CDS | 35.0% | |
| TTCCTATAAGATGCAGTGAA+TGG | - | chr8_1:84854541-84854560 | None:intergenic | 35.0% | |
| AGACTACTTCATCTAATGCA+TGG | + | chr8_1:84854572-84854591 | Msa1221290:CDS | 35.0% | |
| ! | TGCATGGTTTTCTCAACAAT+TGG | + | chr8_1:84854588-84854607 | Msa1221290:CDS | 35.0% |
| AAGTCAACAAAGATTGAGTG+AGG | + | chr8_1:84854618-84854637 | Msa1221290:CDS | 35.0% | |
| GACATCAAAAGATTTCCTCA+AGG | + | chr8_1:84854676-84854695 | Msa1221290:CDS | 35.0% | |
| TTGTGGAAGAGAATTGGGAT+TGG | - | chr8_1:84853549-84853568 | None:intergenic | 40.0% | |
| !! | GTATGCCATGGTTGATTTGA+AGG | - | chr8_1:84853632-84853651 | None:intergenic | 40.0% |
| GCAATTATGAGTGTATGCCA+TGG | - | chr8_1:84853644-84853663 | None:intergenic | 40.0% | |
| GAATTCTTGGGGAATGTAAG+TGG | + | chr8_1:84854085-84854104 | Msa1221290:CDS | 40.0% | |
| ! | ACATTGGTGTGAAGAGTGTA+TGG | - | chr8_1:84854115-84854134 | None:intergenic | 40.0% |
| CACACCAATGTGTTTAGTCA+AGG | + | chr8_1:84854124-84854143 | Msa1221290:CDS | 40.0% | |
| GAGAGCAACAATTCCATCTT+TGG | + | chr8_1:84854158-84854177 | Msa1221290:CDS | 40.0% | |
| CAGTTGGATCAAACCAAAGA+TGG | - | chr8_1:84854174-84854193 | None:intergenic | 40.0% | |
| TAGGTGTGAAAATCAGCAGT+TGG | - | chr8_1:84854190-84854209 | None:intergenic | 40.0% | |
| TTCACACCTACTCCATTCTT+TGG | + | chr8_1:84854200-84854219 | Msa1221290:CDS | 40.0% | |
| AGGATTCCAAAGAATGGAGT+AGG | - | chr8_1:84854209-84854228 | None:intergenic | 40.0% | |
| ! | GAATGCAGTTTTTCTGTGGA+TGG | + | chr8_1:84854370-84854389 | Msa1221290:intron | 40.0% |
| GTCTATGGAATGCTGATGAT+TGG | + | chr8_1:84854473-84854492 | Msa1221290:CDS | 40.0% | |
| CTCCATTCACTGCATCTTAT+AGG | + | chr8_1:84854536-84854555 | Msa1221290:CDS | 40.0% | |
| TTGTGGAAGAGAATTGGGAT+TGG | - | chr8_1:84853549-84853568 | None:intergenic | 40.0% | |
| !! | GTATGCCATGGTTGATTTGA+AGG | - | chr8_1:84853632-84853651 | None:intergenic | 40.0% |
| GCAATTATGAGTGTATGCCA+TGG | - | chr8_1:84853644-84853663 | None:intergenic | 40.0% | |
| GAATTCTTGGGGAATGTAAG+TGG | + | chr8_1:84854085-84854104 | Msa1221290:CDS | 40.0% | |
| ! | ACATTGGTGTGAAGAGTGTA+TGG | - | chr8_1:84854115-84854134 | None:intergenic | 40.0% |
| CACACCAATGTGTTTAGTCA+AGG | + | chr8_1:84854124-84854143 | Msa1221290:CDS | 40.0% | |
| GAGAGCAACAATTCCATCTT+TGG | + | chr8_1:84854158-84854177 | Msa1221290:CDS | 40.0% | |
| CAGTTGGATCAAACCAAAGA+TGG | - | chr8_1:84854174-84854193 | None:intergenic | 40.0% | |
| TAGGTGTGAAAATCAGCAGT+TGG | - | chr8_1:84854190-84854209 | None:intergenic | 40.0% | |
| TTCACACCTACTCCATTCTT+TGG | + | chr8_1:84854200-84854219 | Msa1221290:CDS | 40.0% | |
| AGGATTCCAAAGAATGGAGT+AGG | - | chr8_1:84854209-84854228 | None:intergenic | 40.0% | |
| ! | GAATGCAGTTTTTCTGTGGA+TGG | + | chr8_1:84854370-84854389 | Msa1221290:intron | 40.0% |
| GTCTATGGAATGCTGATGAT+TGG | + | chr8_1:84854473-84854492 | Msa1221290:CDS | 40.0% | |
| CTCCATTCACTGCATCTTAT+AGG | + | chr8_1:84854536-84854555 | Msa1221290:CDS | 40.0% | |
| ! | AGCTGCAGTTTTCCATGAGT+TGG | - | chr8_1:84853452-84853471 | None:intergenic | 45.0% |
| TGGAAAACTGCAGCTGTACA+CGG | + | chr8_1:84853457-84853476 | Msa1221290:intron | 45.0% | |
| ! | GAAACAGAGGAAAGTGCACT+CGG | - | chr8_1:84853492-84853511 | None:intergenic | 45.0% |
| TTGACCGTTGTCGAGTATCT+TGG | - | chr8_1:84853778-84853797 | None:intergenic | 45.0% | |
| ATGCAGCTTAAGCTTGTACC+TGG | + | chr8_1:84853876-84853895 | Msa1221290:CDS | 45.0% | |
| CTTGTACCTGGAAATTCTGC+AGG | + | chr8_1:84853888-84853907 | Msa1221290:CDS | 45.0% | |
| GGCATGCAGTTGTCATCAAA+AGG | + | chr8_1:84854037-84854056 | Msa1221290:intron | 45.0% | |
| GCGTTGAGGATTCCAAAGAA+TGG | - | chr8_1:84854215-84854234 | None:intergenic | 45.0% | |
| AACGCATTGTGTAAGCACCT+CGG | + | chr8_1:84854230-84854249 | Msa1221290:intron | 45.0% | |
| TAGTGTCAATATCGTGTCCG+AGG | - | chr8_1:84854250-84854269 | None:intergenic | 45.0% | |
| ATGCAGTACACTCTGTTGGA+AGG | - | chr8_1:84854702-84854721 | None:intergenic | 45.0% | |
| TAGGATGCAGTACACTCTGT+TGG | - | chr8_1:84854706-84854725 | None:intergenic | 45.0% | |
| ! | AGCTGCAGTTTTCCATGAGT+TGG | - | chr8_1:84853452-84853471 | None:intergenic | 45.0% |
| TGGAAAACTGCAGCTGTACA+CGG | + | chr8_1:84853457-84853476 | Msa1221290:intron | 45.0% | |
| ! | GAAACAGAGGAAAGTGCACT+CGG | - | chr8_1:84853492-84853511 | None:intergenic | 45.0% |
| TTGACCGTTGTCGAGTATCT+TGG | - | chr8_1:84853778-84853797 | None:intergenic | 45.0% | |
| ATGCAGCTTAAGCTTGTACC+TGG | + | chr8_1:84853876-84853895 | Msa1221290:CDS | 45.0% | |
| CTTGTACCTGGAAATTCTGC+AGG | + | chr8_1:84853888-84853907 | Msa1221290:CDS | 45.0% | |
| GGCATGCAGTTGTCATCAAA+AGG | + | chr8_1:84854037-84854056 | Msa1221290:intron | 45.0% | |
| GCGTTGAGGATTCCAAAGAA+TGG | - | chr8_1:84854215-84854234 | None:intergenic | 45.0% | |
| AACGCATTGTGTAAGCACCT+CGG | + | chr8_1:84854230-84854249 | Msa1221290:intron | 45.0% | |
| TAGTGTCAATATCGTGTCCG+AGG | - | chr8_1:84854250-84854269 | None:intergenic | 45.0% | |
| ATGCAGTACACTCTGTTGGA+AGG | - | chr8_1:84854702-84854721 | None:intergenic | 45.0% | |
| TAGGATGCAGTACACTCTGT+TGG | - | chr8_1:84854706-84854725 | None:intergenic | 45.0% | |
| CGTGCCAAGATACTCGACAA+CGG | + | chr8_1:84853771-84853790 | Msa1221290:CDS | 50.0% | |
| ! | AGAACCAGAGGCTTTGTCGA+GGG | - | chr8_1:84853814-84853833 | None:intergenic | 50.0% |
| GGATTGGAATCCAGAACCAG+AGG | - | chr8_1:84853826-84853845 | None:intergenic | 50.0% | |
| ACAGTGCCTGCAGAATTTCC+AGG | - | chr8_1:84853897-84853916 | None:intergenic | 50.0% | |
| GGTGCTTACACAATGCGTTG+AGG | - | chr8_1:84854229-84854248 | None:intergenic | 50.0% | |
| GCTGATGATTGGGCAACAAG+AGG | + | chr8_1:84854484-84854503 | Msa1221290:CDS | 50.0% | |
| GATGATTGGGCAACAAGAGG+CGG | + | chr8_1:84854487-84854506 | Msa1221290:CDS | 50.0% | |
| ! | GCGGTCTTGTCAAGACAGAT+TGG | + | chr8_1:84854506-84854525 | Msa1221290:CDS | 50.0% |
| CGTGCCAAGATACTCGACAA+CGG | + | chr8_1:84853771-84853790 | Msa1221290:CDS | 50.0% | |
| ! | AGAACCAGAGGCTTTGTCGA+GGG | - | chr8_1:84853814-84853833 | None:intergenic | 50.0% |
| GGATTGGAATCCAGAACCAG+AGG | - | chr8_1:84853826-84853845 | None:intergenic | 50.0% | |
| ACAGTGCCTGCAGAATTTCC+AGG | - | chr8_1:84853897-84853916 | None:intergenic | 50.0% | |
| GGTGCTTACACAATGCGTTG+AGG | - | chr8_1:84854229-84854248 | None:intergenic | 50.0% | |
| GCTGATGATTGGGCAACAAG+AGG | + | chr8_1:84854484-84854503 | Msa1221290:CDS | 50.0% | |
| GATGATTGGGCAACAAGAGG+CGG | + | chr8_1:84854487-84854506 | Msa1221290:CDS | 50.0% | |
| ! | GCGGTCTTGTCAAGACAGAT+TGG | + | chr8_1:84854506-84854525 | Msa1221290:CDS | 50.0% |
| CTTTCCCTCGACAAAGCCTC+TGG | + | chr8_1:84853807-84853826 | Msa1221290:CDS | 55.0% | |
| ! | CAGAACCAGAGGCTTTGTCG+AGG | - | chr8_1:84853815-84853834 | None:intergenic | 55.0% |
| ! | CTCGACAAAGCCTCTGGTTC+TGG | + | chr8_1:84853813-84853832 | Msa1221290:CDS | 55.0% |
| CACTCTGTTGGAAGGCCTTG+AGG | - | chr8_1:84854694-84854713 | None:intergenic | 55.0% | |
| CTTTCCCTCGACAAAGCCTC+TGG | + | chr8_1:84853807-84853826 | Msa1221290:CDS | 55.0% | |
| ! | CAGAACCAGAGGCTTTGTCG+AGG | - | chr8_1:84853815-84853834 | None:intergenic | 55.0% |
| ! | CTCGACAAAGCCTCTGGTTC+TGG | + | chr8_1:84853813-84853832 | Msa1221290:CDS | 55.0% |
| CACTCTGTTGGAAGGCCTTG+AGG | - | chr8_1:84854694-84854713 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 84853063 | 84854726 | 84853063 | ID=Msa1221290;Name=Msa1221290 |
| chr8_1 | mRNA | 84853063 | 84854726 | 84853063 | ID=Msa1221290-mRNA-1;Parent=Msa1221290;Name=Msa1221290-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.33|0|0.75|1|1|4|0|280 |
| chr8_1 | exon | 84853063 | 84853100 | 84853063 | ID=Msa1221290-mRNA-1:exon:30477;Parent=Msa1221290-mRNA-1 |
| chr8_1 | exon | 84853668 | 84853929 | 84853668 | ID=Msa1221290-mRNA-1:exon:30478;Parent=Msa1221290-mRNA-1 |
| chr8_1 | exon | 84854046 | 84854239 | 84854046 | ID=Msa1221290-mRNA-1:exon:30479;Parent=Msa1221290-mRNA-1 |
| chr8_1 | exon | 84854378 | 84854726 | 84854378 | ID=Msa1221290-mRNA-1:exon:30480;Parent=Msa1221290-mRNA-1 |
| chr8_1 | CDS | 84853063 | 84853100 | 84853063 | ID=Msa1221290-mRNA-1:cds;Parent=Msa1221290-mRNA-1 |
| chr8_1 | CDS | 84853668 | 84853929 | 84853668 | ID=Msa1221290-mRNA-1:cds;Parent=Msa1221290-mRNA-1 |
| chr8_1 | CDS | 84854046 | 84854239 | 84854046 | ID=Msa1221290-mRNA-1:cds;Parent=Msa1221290-mRNA-1 |
| chr8_1 | CDS | 84854378 | 84854726 | 84854378 | ID=Msa1221290-mRNA-1:cds;Parent=Msa1221290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
