AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337460 MtrunA17_Chr4g0072671 97.213 287 6 1 1 285 1 287 0.0 575
Msa1337460 MtrunA17_Chr4g0072611 82.796 279 43 3 5 283 7 280 1.02e-171 476
Msa1337460 MtrunA17_Chr7g0258911 82.918 281 43 3 3 283 4 279 2.00e-168 467
Msa1337460 MtrunA17_Chr4g0071341 77.736 265 58 1 20 284 19 282 1.32e-151 425
Msa1337460 MtrunA17_Chr4g0072601 73.333 285 72 3 1 283 1 283 3.42e-150 421
Msa1337460 MtrunA17_Chr2g0299061 70.463 281 76 3 7 283 9 286 4.59e-145 409
Msa1337460 MtrunA17_Chr8g0377841 68.966 290 78 2 1 285 1 283 2.80e-143 404
Msa1337460 MtrunA17_Chr3g0122021 70.175 285 75 2 1 283 1 277 1.57e-142 402
Msa1337460 MtrunA17_Chr3g0122031 70.175 285 75 2 1 283 1 277 1.64e-142 402
Msa1337460 MtrunA17_Chr4g0072681 75.610 246 52 4 47 285 1 245 6.71e-132 374
Msa1337460 MtrunA17_Chr8g0389641 63.396 265 53 1 19 283 22 242 2.16e-120 345
Msa1337460 MtrunA17_Chr6g0486581 52.797 286 129 4 1 283 1 283 4.01e-104 305
Msa1337460 MtrunA17_Chr5g0443391 52.982 285 125 3 1 283 1 278 1.52e-102 301
Msa1337460 MtrunA17_Chr6g0461761 52.778 288 129 3 3 285 4 289 4.53e-101 297
Msa1337460 MtrunA17_Chr7g0252631 52.595 289 129 3 1 283 1 287 1.44e-100 296
Msa1337460 MtrunA17_Chr7g0252621 52.595 289 129 3 1 283 1 287 4.29e-100 295
Msa1337460 MtrunA17_Chr6g0461731 55.985 259 112 2 26 284 55 311 4.31e-100 295
Msa1337460 MtrunA17_Chr7g0252601 54.580 262 109 3 26 283 32 287 1.42e-98 291
Msa1337460 MtrunA17_Chr4g0054451 49.466 281 133 4 9 283 12 289 1.44e-98 291
Msa1337460 MtrunA17_Chr3g0096651 53.053 262 116 3 23 283 27 282 1.65e-98 290
Msa1337460 MtrunA17_Chr4g0054431 50.179 279 132 4 9 283 12 287 3.87e-98 290
Msa1337460 MtrunA17_Chr2g0323161 47.603 292 140 6 1 284 1 287 8.81e-95 281
Msa1337460 MtrunA17_Chr4g0023961 47.279 294 142 6 1 285 1 290 2.94e-93 277
Msa1337460 MtrunA17_Chr1g0206681 48.375 277 133 4 14 284 20 292 1.56e-92 275
Msa1337460 MtrunA17_Chr1g0206081 45.238 294 144 6 3 284 7 295 1.02e-85 258
Msa1337460 MtrunA17_Chr8g0390201 56.633 196 81 2 91 283 15 209 4.24e-78 236
Msa1337460 MtrunA17_Chr8g0340001 46.639 238 106 6 57 285 8 233 9.14e-68 210
Msa1337460 MtrunA17_Chr4g0072641 72.868 129 19 1 156 284 37 149 7.62e-63 195
Msa1337460 MtrunA17_Chr4g0028221 41.948 267 136 7 25 283 49 304 3.69e-62 198
Msa1337460 MtrunA17_Chr7g0264731 40.000 280 149 7 13 284 24 292 8.81e-62 197
Msa1337460 MtrunA17_Chr2g0327411 40.520 269 138 8 25 283 53 309 3.08e-60 193
Msa1337460 MtrunA17_Chr1g0180451 37.457 291 163 7 1 283 15 294 1.88e-59 191
Msa1337460 MtrunA17_Chr2g0303861 39.716 282 157 7 7 285 10 281 6.36e-58 187
Msa1337460 MtrunA17_Chr8g0375981 35.017 297 174 8 1 284 1 291 2.82e-55 181
Msa1337460 MtrunA17_Chr1g0161951 39.326 267 147 8 26 284 33 292 1.54e-54 179
Msa1337460 MtrunA17_Chr2g0303721 37.234 282 153 8 7 281 11 275 7.71e-54 176
Msa1337460 MtrunA17_Chr7g0235541 45.872 218 100 7 73 283 1 207 9.82e-54 174
Msa1337460 MtrunA17_Chr8g0365231 36.431 269 148 7 30 283 50 310 1.03e-50 169
Msa1337460 MtrunA17_Chr5g0410621 35.448 268 159 8 26 283 42 305 4.70e-48 163
Msa1337460 MtrunA17_Chr8g0382041 34.799 273 153 11 26 284 34 295 1.06e-41 146
Msa1337460 MtrunA17_Chr4g0072631 68.056 72 23 0 2 73 7 78 2.78e-25 97.1
Msa1337460 MtrunA17_Chr8g0374231 45.370 108 48 6 182 284 1 102 3.37e-22 89.0
Msa1337460 MtrunA17_Chr8g0390181 49.383 81 39 1 13 93 15 93 5.45e-18 77.4
Msa1337460 MtrunA17_Chr8g0350711 33.333 177 110 4 45 219 51 221 4.30e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337460 AT4G25810.1 75.704 284 65 3 1 283 3 283 8.18e-160 446
Msa1337460 AT5G57560.1 73.145 283 71 3 3 283 2 281 8.16e-156 436
Msa1337460 AT5G57550.1 67.820 289 84 3 1 285 1 284 3.96e-147 414
Msa1337460 AT4G30270.1 69.314 277 69 2 8 284 6 266 2.35e-144 406
Msa1337460 AT2G18800.1 65.085 295 89 4 4 284 3 297 2.05e-139 395
Msa1337460 AT5G48070.1 64.875 279 89 4 7 284 12 282 6.28e-139 393
Msa1337460 AT3G23730.1 66.429 280 88 3 9 283 8 286 2.08e-137 390
Msa1337460 AT4G14130.1 65.603 282 96 1 2 283 4 284 1.23e-135 385
Msa1337460 AT5G57530.1 67.164 268 78 3 20 283 21 282 6.21e-132 375
Msa1337460 AT4G30280.1 63.860 285 94 4 3 284 4 282 2.56e-129 369
Msa1337460 AT5G57540.1 65.399 263 85 2 23 283 23 281 1.63e-128 367
Msa1337460 AT4G30290.1 63.860 285 94 4 1 284 1 277 3.42e-128 366
Msa1337460 AT4G25820.1 66.038 265 88 1 19 283 23 285 2.27e-127 364
Msa1337460 AT1G65310.2 65.299 268 86 3 18 284 43 304 1.14e-126 363
Msa1337460 AT1G65310.1 65.299 268 86 3 18 284 21 282 1.64e-126 362
Msa1337460 AT5G13870.2 52.448 286 131 3 1 283 4 287 2.91e-99 293
Msa1337460 AT5G13870.1 52.448 286 131 3 1 283 4 287 2.91e-99 293
Msa1337460 AT5G13870.3 52.448 286 131 3 1 283 4 287 2.91e-99 293
Msa1337460 AT5G65730.1 47.292 277 142 3 8 283 17 290 6.07e-96 285
Msa1337460 AT4G28850.1 48.443 289 140 5 1 284 4 288 1.93e-95 283
Msa1337460 AT2G06850.1 50.177 283 134 3 1 283 15 290 5.72e-94 280
Msa1337460 AT4G37800.1 48.571 280 140 3 6 284 14 290 7.76e-94 279
Msa1337460 AT4G03210.1 47.902 286 133 6 7 285 10 286 7.99e-93 276
Msa1337460 AT2G14620.1 48.551 276 134 5 14 284 23 295 4.16e-89 267
Msa1337460 AT2G06850.2 56.140 228 98 2 56 283 5 230 5.99e-88 262
Msa1337460 AT4G03210.2 52.941 255 101 7 38 285 16 258 1.15e-87 262
Msa1337460 AT1G11545.1 47.475 297 135 8 2 284 11 300 9.56e-87 261
Msa1337460 AT4G13090.1 45.936 283 142 6 8 283 10 288 1.37e-78 240
Msa1337460 AT2G14620.2 50.649 231 108 4 57 284 18 245 3.07e-78 238
Msa1337460 AT2G14620.3 51.351 222 102 4 66 284 16 234 2.24e-76 233
Msa1337460 AT4G13080.1 48.062 258 129 5 26 283 39 291 1.14e-75 233
Msa1337460 AT3G25050.1 45.211 261 134 6 26 283 35 289 2.43e-74 229
Msa1337460 AT2G36870.1 41.935 279 143 7 13 283 30 297 2.10e-63 202
Msa1337460 AT3G44990.1 42.481 266 134 7 26 283 39 293 4.12e-61 196
Msa1337460 AT1G10550.1 36.015 261 150 6 37 283 52 309 5.13e-52 172
Msa1337460 AT1G32170.1 34.333 300 170 10 3 284 4 294 2.26e-51 172
Msa1337460 AT1G14720.1 35.581 267 160 7 25 284 30 291 2.68e-49 166
Msa1337460 AT2G01850.1 31.864 295 186 7 1 284 1 291 4.08e-47 160
Msa1337460 AT3G48580.1 36.653 251 141 7 33 283 41 273 1.78e-44 152
Msa1337460 AT4G18990.1 34.164 281 156 9 26 284 40 313 2.58e-43 151
Msa1337460 AT3G48580.3 35.526 228 130 6 56 283 4 214 1.21e-38 135
Msa1337460 AT4G18990.2 34.722 216 113 8 91 284 30 239 9.39e-35 127
Msa1337460 AT2G36870.2 43.709 151 75 3 13 155 30 178 5.82e-33 119
Msa1337460 AT3G48580.2 31.474 251 134 8 33 283 41 253 1.05e-27 108

Find 64 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGCGTTGTTGAGTATTT+TGG 0.226569 tig0001526:-115201 None:intergenic
CTGTAGATGGAACTCCAATT+AGG 0.235182 tig0001526:+115781 Msa1337460:CDS
CTCCATTTACCGCTTCTTAC+AGG 0.238448 tig0001526:+115934 Msa1337460:CDS
ATGTTCTTGAATTCCCTAAT+TGG 0.259290 tig0001526:-115795 None:intergenic
TGAGAATCTATTCTAGTCTT+TGG 0.265403 tig0001526:+115856 Msa1337460:CDS
TGCTTCTTATTCCTCTGCTT+TGG 0.286665 tig0001526:+115111 Msa1337460:CDS
GAGATAGACTTTGAATTCTT+AGG 0.299139 tig0001526:+115494 Msa1337460:CDS
TTCCTGTAAGAAGCGGTAAA+TGG 0.328030 tig0001526:-115936 None:intergenic
GTCTTTGGAATGCTGATGAT+TGG 0.342081 tig0001526:+115871 Msa1337460:CDS
TTCACACATACTCAATTCTC+TGG 0.375632 tig0001526:+115621 Msa1337460:CDS
TGTAGATGGAACTCCAATTA+GGG 0.398243 tig0001526:+115782 Msa1337460:CDS
CTTGACAAAGCCTCTGGCTC+TGG 0.398860 tig0001526:+115239 Msa1337460:CDS
GTTCCATGTACAAGCATTGT+TGG 0.399945 tig0001526:-115967 None:intergenic
ATCTAGTGAGTGCATTCAAC+TGG 0.406472 tig0001526:-116149 None:intergenic
ATGCAGATTAAGCTTGTTCC+AGG 0.407701 tig0001526:+115302 Msa1337460:CDS
GCTCTCTGTTACCTTTGCCT+TGG 0.439694 tig0001526:-115562 None:intergenic
AGACTAGAATAGATTCTCAT+TGG 0.441045 tig0001526:-115852 None:intergenic
AGAAGCGGTAAATGGAGCTT+TGG 0.460589 tig0001526:-115928 None:intergenic
TCACAACAGCTTGACTCAAC+AGG 0.461793 tig0001526:+116044 Msa1337460:CDS
AGATCTTAGTCATATACTAT+AGG 0.464222 tig0001526:+116168 Msa1337460:exon
TAGAATAGATTCTCATTGGT+TGG 0.468992 tig0001526:-115848 None:intergenic
TCTTTGGAATGCTGATGATT+GGG 0.473720 tig0001526:+115872 Msa1337460:CDS
CTTGTTCCAGGCAACTCTGC+TGG 0.477831 tig0001526:+115314 Msa1337460:CDS
CTGTCTCTTGACAAAGCCTC+TGG 0.485728 tig0001526:+115233 Msa1337460:CDS
CCCATGTAATCTGAAAATCT+TGG 0.491907 tig0001526:-115166 None:intergenic
ACATTGGTGTGAAGGATGTA+AGG 0.496043 tig0001526:-115533 None:intergenic
CAGGTCTGCAGAGGCTGAGG+TGG 0.507933 tig0001526:+116063 Msa1337460:CDS
GTGGACTTGTTAAGACAGAT+TGG 0.508499 tig0001526:+115904 Msa1337460:CDS
CAACAGGTCTGCAGAGGCTG+AGG 0.508970 tig0001526:+116060 Msa1337460:CDS
TTTCAGATTACATGGGGAGA+TGG 0.522270 tig0001526:+115173 Msa1337460:CDS
ACAGTGCCAGCAGAGTTGCC+TGG 0.527429 tig0001526:-115320 None:intergenic
AAGAGACAGAGTAAGAAGAT+TGG 0.527904 tig0001526:-115219 None:intergenic
TCACTTCAGCTATCATCAAA+AGG 0.530973 tig0001526:+115458 Msa1337460:intron
ATGCCAACAATGCTTGTACA+TGG 0.537452 tig0001526:+115964 Msa1337460:CDS
CATTCAACTGGAAGGCCTTG+TGG 0.552461 tig0001526:-116137 None:intergenic
CACACCAATGTGTTTAGCCA+AGG 0.563595 tig0001526:+115545 Msa1337460:CDS
CAAAACCCTCTGCTTCCTCA+TGG 0.566913 tig0001526:+116018 Msa1337460:CDS
ATCATCAAAAGGAGGTGCAT+GGG 0.570048 tig0001526:+115469 Msa1337460:CDS
TATCATCAAAAGGAGGTGCA+TGG 0.582020 tig0001526:+115468 Msa1337460:CDS
CTGCAGTTGGGTCAAACCAA+AGG 0.586715 tig0001526:-115595 None:intergenic
AATTAGGGAATTCAAGAACA+TGG 0.587989 tig0001526:+115797 Msa1337460:CDS
TTTGCCTTGGCTAAACACAT+TGG 0.588875 tig0001526:-115549 None:intergenic
AGGTCTGCAGAGGCTGAGGT+GGG 0.596207 tig0001526:+116064 Msa1337460:CDS
GATGATTGGGCTACAAGAGG+TGG 0.596350 tig0001526:+115885 Msa1337460:CDS
ATTAATGTAGCATGTGCTGC+TGG 0.599927 tig0001526:+115134 Msa1337460:CDS
GGATTGAAAGCCAGAGCCAG+AGG 0.605791 tig0001526:-115249 None:intergenic
ATGTGTGAAAATCTGCAGTT+GGG 0.606525 tig0001526:-115607 None:intergenic
GGCTAAACACATTGGTGTGA+AGG 0.607001 tig0001526:-115541 None:intergenic
AATGCTTGTACATGGAACAA+TGG 0.607069 tig0001526:+115972 Msa1337460:CDS
AGTACTTACACAATACGTTG+TGG 0.616337 tig0001526:-115647 None:intergenic
TATGTGTGAAAATCTGCAGT+TGG 0.616665 tig0001526:-115608 None:intergenic
TTGACTCAACAGGTCTGCAG+AGG 0.621733 tig0001526:+116054 Msa1337460:CDS
TTCAAGAACATGGAATCAAG+TGG 0.625602 tig0001526:+115807 Msa1337460:CDS
TGATAGCCATGAGGAAGCAG+AGG 0.629740 tig0001526:-116024 None:intergenic
AGTGAGTGCATTCAACTGGA+AGG 0.634779 tig0001526:-116145 None:intergenic
ATTGAAATTCCTGTAAGAAG+CGG 0.652103 tig0001526:-115943 None:intergenic
GAATTCTTAGGAAATTTGAG+TGG 0.658307 tig0001526:+115506 Msa1337460:CDS
AATGTGTTTAGCCAAGGCAA+AGG 0.659745 tig0001526:+115551 Msa1337460:CDS
GATAGCCATGAGGAAGCAGA+GGG 0.664376 tig0001526:-116023 None:intergenic
CTTCAGCTATCATCAAAAGG+AGG 0.677139 tig0001526:+115461 Msa1337460:intron
GCTGATGATTGGGCTACAAG+AGG 0.684485 tig0001526:+115882 Msa1337460:CDS
GCTACATTAATCCAAAGCAG+AGG 0.687490 tig0001526:-115122 None:intergenic
AAGCTGTTGTGATAGCCATG+AGG 0.744355 tig0001526:-116033 None:intergenic
GATAAGAAGAGATTTCCACA+AGG 0.790444 tig0001526:+116122 Msa1337460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCCAAAAATGAATACTTATT+TGG + tig0001526:115269-115288 Msa1337460:CDS 20.0%
!! AAAAAAAACATTACTTGTGT+TGG + tig0001526:115713-115732 Msa1337460:intron 20.0%
!! TCCAAAAATGAATACTTATT+TGG + tig0001526:115269-115288 Msa1337460:CDS 20.0%
!! AAAAAAAACATTACTTGTGT+TGG + tig0001526:115713-115732 Msa1337460:intron 20.0%
!! GCCAAATAAGTATTCATTTT+TGG - tig0001526:115273-115292 None:intergenic 25.0%
! AGATCTTAGTCATATACTAT+AGG + tig0001526:116168-116187 Msa1337460:exon 25.0%
!! GCCAAATAAGTATTCATTTT+TGG - tig0001526:115273-115292 None:intergenic 25.0%
! AGATCTTAGTCATATACTAT+AGG + tig0001526:116168-116187 Msa1337460:exon 25.0%
! ACCAAGATTTTCAGATTACA+TGG + tig0001526:115165-115184 Msa1337460:CDS 30.0%
! CCAAGATTTTCAGATTACAT+GGG + tig0001526:115166-115185 Msa1337460:CDS 30.0%
! CAAGATTTTCAGATTACATG+GGG + tig0001526:115167-115186 Msa1337460:CDS 30.0%
GAGATAGACTTTGAATTCTT+AGG + tig0001526:115494-115513 Msa1337460:CDS 30.0%
GAATTCTTAGGAAATTTGAG+TGG + tig0001526:115506-115525 Msa1337460:CDS 30.0%
!! TTTTTCAGTTTCTCTGTAGA+TGG + tig0001526:115768-115787 Msa1337460:intron 30.0%
ATGTTCTTGAATTCCCTAAT+TGG - tig0001526:115798-115817 None:intergenic 30.0%
AATTAGGGAATTCAAGAACA+TGG + tig0001526:115797-115816 Msa1337460:CDS 30.0%
!!! ATTCTCATTGGTTGGTTTTT+GGG - tig0001526:115843-115862 None:intergenic 30.0%
TAGAATAGATTCTCATTGGT+TGG - tig0001526:115851-115870 None:intergenic 30.0%
AGACTAGAATAGATTCTCAT+TGG - tig0001526:115855-115874 None:intergenic 30.0%
! TGAGAATCTATTCTAGTCTT+TGG + tig0001526:115856-115875 Msa1337460:CDS 30.0%
ATTGAAATTCCTGTAAGAAG+CGG - tig0001526:115946-115965 None:intergenic 30.0%
! ACCAAGATTTTCAGATTACA+TGG + tig0001526:115165-115184 Msa1337460:CDS 30.0%
! CCAAGATTTTCAGATTACAT+GGG + tig0001526:115166-115185 Msa1337460:CDS 30.0%
! CAAGATTTTCAGATTACATG+GGG + tig0001526:115167-115186 Msa1337460:CDS 30.0%
GAGATAGACTTTGAATTCTT+AGG + tig0001526:115494-115513 Msa1337460:CDS 30.0%
GAATTCTTAGGAAATTTGAG+TGG + tig0001526:115506-115525 Msa1337460:CDS 30.0%
!! TTTTTCAGTTTCTCTGTAGA+TGG + tig0001526:115768-115787 Msa1337460:intron 30.0%
ATGTTCTTGAATTCCCTAAT+TGG - tig0001526:115798-115817 None:intergenic 30.0%
AATTAGGGAATTCAAGAACA+TGG + tig0001526:115797-115816 Msa1337460:CDS 30.0%
!!! ATTCTCATTGGTTGGTTTTT+GGG - tig0001526:115843-115862 None:intergenic 30.0%
TAGAATAGATTCTCATTGGT+TGG - tig0001526:115851-115870 None:intergenic 30.0%
AGACTAGAATAGATTCTCAT+TGG - tig0001526:115855-115874 None:intergenic 30.0%
! TGAGAATCTATTCTAGTCTT+TGG + tig0001526:115856-115875 Msa1337460:CDS 30.0%
ATTGAAATTCCTGTAAGAAG+CGG - tig0001526:115946-115965 None:intergenic 30.0%
CCCATGTAATCTGAAAATCT+TGG - tig0001526:115169-115188 None:intergenic 35.0%
! ATTGGCGTTGTTGAGTATTT+TGG - tig0001526:115204-115223 None:intergenic 35.0%
AAGAGACAGAGTAAGAAGAT+TGG - tig0001526:115222-115241 None:intergenic 35.0%
TCACTTCAGCTATCATCAAA+AGG + tig0001526:115458-115477 Msa1337460:intron 35.0%
! GAGAGCAACAATTTTACCTT+TGG + tig0001526:115579-115598 Msa1337460:CDS 35.0%
ATGTGTGAAAATCTGCAGTT+GGG - tig0001526:115610-115629 None:intergenic 35.0%
TATGTGTGAAAATCTGCAGT+TGG - tig0001526:115611-115630 None:intergenic 35.0%
TTCACACATACTCAATTCTC+TGG + tig0001526:115621-115640 Msa1337460:CDS 35.0%
AGTACTTACACAATACGTTG+TGG - tig0001526:115650-115669 None:intergenic 35.0%
TGTAGATGGAACTCCAATTA+GGG + tig0001526:115782-115801 Msa1337460:CDS 35.0%
TTCAAGAACATGGAATCAAG+TGG + tig0001526:115807-115826 Msa1337460:CDS 35.0%
!!! TTCTCATTGGTTGGTTTTTG+GGG - tig0001526:115842-115861 None:intergenic 35.0%
!!! GATTCTCATTGGTTGGTTTT+TGG - tig0001526:115844-115863 None:intergenic 35.0%
!! TCTTTGGAATGCTGATGATT+GGG + tig0001526:115872-115891 Msa1337460:CDS 35.0%
AATGCTTGTACATGGAACAA+TGG + tig0001526:115972-115991 Msa1337460:CDS 35.0%
GATAAGAAGAGATTTCCACA+AGG + tig0001526:116122-116141 Msa1337460:CDS 35.0%
CCCATGTAATCTGAAAATCT+TGG - tig0001526:115169-115188 None:intergenic 35.0%
! ATTGGCGTTGTTGAGTATTT+TGG - tig0001526:115204-115223 None:intergenic 35.0%
AAGAGACAGAGTAAGAAGAT+TGG - tig0001526:115222-115241 None:intergenic 35.0%
TCACTTCAGCTATCATCAAA+AGG + tig0001526:115458-115477 Msa1337460:intron 35.0%
! GAGAGCAACAATTTTACCTT+TGG + tig0001526:115579-115598 Msa1337460:CDS 35.0%
ATGTGTGAAAATCTGCAGTT+GGG - tig0001526:115610-115629 None:intergenic 35.0%
TATGTGTGAAAATCTGCAGT+TGG - tig0001526:115611-115630 None:intergenic 35.0%
TTCACACATACTCAATTCTC+TGG + tig0001526:115621-115640 Msa1337460:CDS 35.0%
AGTACTTACACAATACGTTG+TGG - tig0001526:115650-115669 None:intergenic 35.0%
TGTAGATGGAACTCCAATTA+GGG + tig0001526:115782-115801 Msa1337460:CDS 35.0%
TTCAAGAACATGGAATCAAG+TGG + tig0001526:115807-115826 Msa1337460:CDS 35.0%
!!! TTCTCATTGGTTGGTTTTTG+GGG - tig0001526:115842-115861 None:intergenic 35.0%
!!! GATTCTCATTGGTTGGTTTT+TGG - tig0001526:115844-115863 None:intergenic 35.0%
!! TCTTTGGAATGCTGATGATT+GGG + tig0001526:115872-115891 Msa1337460:CDS 35.0%
AATGCTTGTACATGGAACAA+TGG + tig0001526:115972-115991 Msa1337460:CDS 35.0%
GATAAGAAGAGATTTCCACA+AGG + tig0001526:116122-116141 Msa1337460:CDS 35.0%
TGCTTCTTATTCCTCTGCTT+TGG + tig0001526:115111-115130 Msa1337460:CDS 40.0%
GCTACATTAATCCAAAGCAG+AGG - tig0001526:115125-115144 None:intergenic 40.0%
ATTAATGTAGCATGTGCTGC+TGG + tig0001526:115134-115153 Msa1337460:CDS 40.0%
TTTCAGATTACATGGGGAGA+TGG + tig0001526:115173-115192 Msa1337460:CDS 40.0%
! ATGCAGATTAAGCTTGTTCC+AGG + tig0001526:115302-115321 Msa1337460:CDS 40.0%
CTTCAGCTATCATCAAAAGG+AGG + tig0001526:115461-115480 Msa1337460:intron 40.0%
! TATCATCAAAAGGAGGTGCA+TGG + tig0001526:115468-115487 Msa1337460:CDS 40.0%
! ATCATCAAAAGGAGGTGCAT+GGG + tig0001526:115469-115488 Msa1337460:CDS 40.0%
ACATTGGTGTGAAGGATGTA+AGG - tig0001526:115536-115555 None:intergenic 40.0%
TTTGCCTTGGCTAAACACAT+TGG - tig0001526:115552-115571 None:intergenic 40.0%
AATGTGTTTAGCCAAGGCAA+AGG + tig0001526:115551-115570 Msa1337460:CDS 40.0%
CTGTAGATGGAACTCCAATT+AGG + tig0001526:115781-115800 Msa1337460:CDS 40.0%
!!! ATTGGTTGGTTTTTGGGGAA+TGG - tig0001526:115837-115856 None:intergenic 40.0%
!! GTCTTTGGAATGCTGATGAT+TGG + tig0001526:115871-115890 Msa1337460:CDS 40.0%
!! GTGGACTTGTTAAGACAGAT+TGG + tig0001526:115904-115923 Msa1337460:CDS 40.0%
TTCCTGTAAGAAGCGGTAAA+TGG - tig0001526:115939-115958 None:intergenic 40.0%
ATGCCAACAATGCTTGTACA+TGG + tig0001526:115964-115983 Msa1337460:CDS 40.0%
! GTTCCATGTACAAGCATTGT+TGG - tig0001526:115970-115989 None:intergenic 40.0%
ATCTAGTGAGTGCATTCAAC+TGG - tig0001526:116152-116171 None:intergenic 40.0%
TGCTTCTTATTCCTCTGCTT+TGG + tig0001526:115111-115130 Msa1337460:CDS 40.0%
GCTACATTAATCCAAAGCAG+AGG - tig0001526:115125-115144 None:intergenic 40.0%
ATTAATGTAGCATGTGCTGC+TGG + tig0001526:115134-115153 Msa1337460:CDS 40.0%
TTTCAGATTACATGGGGAGA+TGG + tig0001526:115173-115192 Msa1337460:CDS 40.0%
! ATGCAGATTAAGCTTGTTCC+AGG + tig0001526:115302-115321 Msa1337460:CDS 40.0%
CTTCAGCTATCATCAAAAGG+AGG + tig0001526:115461-115480 Msa1337460:intron 40.0%
! TATCATCAAAAGGAGGTGCA+TGG + tig0001526:115468-115487 Msa1337460:CDS 40.0%
! ATCATCAAAAGGAGGTGCAT+GGG + tig0001526:115469-115488 Msa1337460:CDS 40.0%
ACATTGGTGTGAAGGATGTA+AGG - tig0001526:115536-115555 None:intergenic 40.0%
TTTGCCTTGGCTAAACACAT+TGG - tig0001526:115552-115571 None:intergenic 40.0%
AATGTGTTTAGCCAAGGCAA+AGG + tig0001526:115551-115570 Msa1337460:CDS 40.0%
CTGTAGATGGAACTCCAATT+AGG + tig0001526:115781-115800 Msa1337460:CDS 40.0%
!!! ATTGGTTGGTTTTTGGGGAA+TGG - tig0001526:115837-115856 None:intergenic 40.0%
!! GTCTTTGGAATGCTGATGAT+TGG + tig0001526:115871-115890 Msa1337460:CDS 40.0%
!! GTGGACTTGTTAAGACAGAT+TGG + tig0001526:115904-115923 Msa1337460:CDS 40.0%
TTCCTGTAAGAAGCGGTAAA+TGG - tig0001526:115939-115958 None:intergenic 40.0%
ATGCCAACAATGCTTGTACA+TGG + tig0001526:115964-115983 Msa1337460:CDS 40.0%
! GTTCCATGTACAAGCATTGT+TGG - tig0001526:115970-115989 None:intergenic 40.0%
ATCTAGTGAGTGCATTCAAC+TGG - tig0001526:116152-116171 None:intergenic 40.0%
GGCTAAACACATTGGTGTGA+AGG - tig0001526:115544-115563 None:intergenic 45.0%
CACACCAATGTGTTTAGCCA+AGG + tig0001526:115545-115564 Msa1337460:CDS 45.0%
AGAAGCGGTAAATGGAGCTT+TGG - tig0001526:115931-115950 None:intergenic 45.0%
CTCCATTTACCGCTTCTTAC+AGG + tig0001526:115934-115953 Msa1337460:CDS 45.0%
AAGCTGTTGTGATAGCCATG+AGG - tig0001526:116036-116055 None:intergenic 45.0%
TCACAACAGCTTGACTCAAC+AGG + tig0001526:116044-116063 Msa1337460:CDS 45.0%
AGTGAGTGCATTCAACTGGA+AGG - tig0001526:116148-116167 None:intergenic 45.0%
GGCTAAACACATTGGTGTGA+AGG - tig0001526:115544-115563 None:intergenic 45.0%
CACACCAATGTGTTTAGCCA+AGG + tig0001526:115545-115564 Msa1337460:CDS 45.0%
AGAAGCGGTAAATGGAGCTT+TGG - tig0001526:115931-115950 None:intergenic 45.0%
CTCCATTTACCGCTTCTTAC+AGG + tig0001526:115934-115953 Msa1337460:CDS 45.0%
AAGCTGTTGTGATAGCCATG+AGG - tig0001526:116036-116055 None:intergenic 45.0%
TCACAACAGCTTGACTCAAC+AGG + tig0001526:116044-116063 Msa1337460:CDS 45.0%
AGTGAGTGCATTCAACTGGA+AGG - tig0001526:116148-116167 None:intergenic 45.0%
CTGTCTCTTGACAAAGCCTC+TGG + tig0001526:115233-115252 Msa1337460:CDS 50.0%
GCTCTCTGTTACCTTTGCCT+TGG - tig0001526:115565-115584 None:intergenic 50.0%
CTGCAGTTGGGTCAAACCAA+AGG - tig0001526:115598-115617 None:intergenic 50.0%
GCTGATGATTGGGCTACAAG+AGG + tig0001526:115882-115901 Msa1337460:CDS 50.0%
GATGATTGGGCTACAAGAGG+TGG + tig0001526:115885-115904 Msa1337460:CDS 50.0%
CAAAACCCTCTGCTTCCTCA+TGG + tig0001526:116018-116037 Msa1337460:CDS 50.0%
GATAGCCATGAGGAAGCAGA+GGG - tig0001526:116026-116045 None:intergenic 50.0%
TGATAGCCATGAGGAAGCAG+AGG - tig0001526:116027-116046 None:intergenic 50.0%
TTGACTCAACAGGTCTGCAG+AGG + tig0001526:116054-116073 Msa1337460:CDS 50.0%
CATTCAACTGGAAGGCCTTG+TGG - tig0001526:116140-116159 None:intergenic 50.0%
CTGTCTCTTGACAAAGCCTC+TGG + tig0001526:115233-115252 Msa1337460:CDS 50.0%
GCTCTCTGTTACCTTTGCCT+TGG - tig0001526:115565-115584 None:intergenic 50.0%
CTGCAGTTGGGTCAAACCAA+AGG - tig0001526:115598-115617 None:intergenic 50.0%
GCTGATGATTGGGCTACAAG+AGG + tig0001526:115882-115901 Msa1337460:CDS 50.0%
GATGATTGGGCTACAAGAGG+TGG + tig0001526:115885-115904 Msa1337460:CDS 50.0%
CAAAACCCTCTGCTTCCTCA+TGG + tig0001526:116018-116037 Msa1337460:CDS 50.0%
GATAGCCATGAGGAAGCAGA+GGG - tig0001526:116026-116045 None:intergenic 50.0%
TGATAGCCATGAGGAAGCAG+AGG - tig0001526:116027-116046 None:intergenic 50.0%
TTGACTCAACAGGTCTGCAG+AGG + tig0001526:116054-116073 Msa1337460:CDS 50.0%
CATTCAACTGGAAGGCCTTG+TGG - tig0001526:116140-116159 None:intergenic 50.0%
! CTTGACAAAGCCTCTGGCTC+TGG + tig0001526:115239-115258 Msa1337460:CDS 55.0%
GGATTGAAAGCCAGAGCCAG+AGG - tig0001526:115252-115271 None:intergenic 55.0%
CTTGTTCCAGGCAACTCTGC+TGG + tig0001526:115314-115333 Msa1337460:CDS 55.0%
! CTTGACAAAGCCTCTGGCTC+TGG + tig0001526:115239-115258 Msa1337460:CDS 55.0%
GGATTGAAAGCCAGAGCCAG+AGG - tig0001526:115252-115271 None:intergenic 55.0%
CTTGTTCCAGGCAACTCTGC+TGG + tig0001526:115314-115333 Msa1337460:CDS 55.0%
ACAGTGCCAGCAGAGTTGCC+TGG - tig0001526:115323-115342 None:intergenic 60.0%
CAACAGGTCTGCAGAGGCTG+AGG + tig0001526:116060-116079 Msa1337460:CDS 60.0%
AGGTCTGCAGAGGCTGAGGT+GGG + tig0001526:116064-116083 Msa1337460:CDS 60.0%
ACAGTGCCAGCAGAGTTGCC+TGG - tig0001526:115323-115342 None:intergenic 60.0%
CAACAGGTCTGCAGAGGCTG+AGG + tig0001526:116060-116079 Msa1337460:CDS 60.0%
AGGTCTGCAGAGGCTGAGGT+GGG + tig0001526:116064-116083 Msa1337460:CDS 60.0%
CAGGTCTGCAGAGGCTGAGG+TGG + tig0001526:116063-116082 Msa1337460:CDS 65.0%
CAGGTCTGCAGAGGCTGAGG+TGG + tig0001526:116063-116082 Msa1337460:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0001526 gene 115086 116206 115086 ID=Msa1337460;Name=Msa1337460
tig0001526 mRNA 115086 116206 115086 ID=Msa1337460-mRNA-1;Parent=Msa1337460;Name=Msa1337460-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|1|0.66|1|1|1|3|37|285
tig0001526 exon 115086 115355 115086 ID=Msa1337460-mRNA-1:exon:1158;Parent=Msa1337460-mRNA-1
tig0001526 exon 115467 115660 115467 ID=Msa1337460-mRNA-1:exon:1159;Parent=Msa1337460-mRNA-1
tig0001526 exon 115776 116206 115776 ID=Msa1337460-mRNA-1:exon:1160;Parent=Msa1337460-mRNA-1
tig0001526 CDS 115086 115355 115086 ID=Msa1337460-mRNA-1:cds;Parent=Msa1337460-mRNA-1
tig0001526 CDS 115467 115660 115467 ID=Msa1337460-mRNA-1:cds;Parent=Msa1337460-mRNA-1
tig0001526 CDS 115776 116169 115776 ID=Msa1337460-mRNA-1:cds;Parent=Msa1337460-mRNA-1
tig0001526 three_prime_UTR 116170 116206 116170 ID=Msa1337460-mRNA-1:three_prime_utr;Parent=Msa1337460-mRNA-1
Gene Sequence

>Msa1337460

ATGGCTTCTACTACTACTTTGCTAGTGCTTCTTATTCCTCTGCTTTGGATTAATGTAGCATGTGCTGCTGGTAACTTCAACCAAGATTTTCAGATTACATGGGGAGATGGTCGTGCCAAAATACTCAACAACGCCAATCTTCTTACTCTGTCTCTTGACAAAGCCTCTGGCTCTGGCTTTCAATCCAAAAATGAATACTTATTTGGCAAAATTGATATGCAGATTAAGCTTGTTCCAGGCAACTCTGCTGGCACTGTCACTGCTTATTATCTATCATCAAAAGGAGGTGCATGGGATGAGATAGACTTTGAATTCTTAGGAAATTTGAGTGGTGATCCTTACATCCTTCACACCAATGTGTTTAGCCAAGGCAAAGGTAACAGAGAGCAACAATTTTACCTTTGGTTTGACCCAACTGCAGATTTTCACACATACTCAATTCTCTGGAATCCACAACGTATTGTTTTCTCTGTAGATGGAACTCCAATTAGGGAATTCAAGAACATGGAATCAAGTGGTGTTCCATTCCCCAAAAACCAACCAATGAGAATCTATTCTAGTCTTTGGAATGCTGATGATTGGGCTACAAGAGGTGGACTTGTTAAGACAGATTGGTCCAAAGCTCCATTTACCGCTTCTTACAGGAATTTCAATGCCAACAATGCTTGTACATGGAACAATGGAAAATCATCATGCAAATCATCATCAAAACCCTCTGCTTCCTCATGGCTATCACAACAGCTTGACTCAACAGGTCTGCAGAGGCTGAGGTGGGTGCAGAAGAACTACATGATTTATAATTACTGCTCAGATAAGAAGAGATTTCCACAAGGCCTTCCAGTTGAATGCACTCACTAG

Protein sequence

>Msa1337460

MASTTTLLVLLIPLLWINVACAAGNFNQDFQITWGDGRAKILNNANLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVPGNSAGTVTAYYLSSKGGAWDEIDFEFLGNLSGDPYILHTNVFSQGKGNREQQFYLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNMESSGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTASYRNFNANNACTWNNGKSSCKSSSKPSASSWLSQQLDSTGLQRLRWVQKNYMIYNYCSDKKRFPQGLPVECTH*