Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1337460 | XP_003610153.1 | 97.213 | 287 | 6 | 1 | 1 | 285 | 1 | 287 | 0.0 | 575 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1337460 | sp|Q38910|XTH23_ARATH | 75.704 | 284 | 65 | 3 | 1 | 283 | 3 | 283 | 8.05e-159 | 446 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1337460 | G7JD12 | 97.213 | 287 | 6 | 1 | 1 | 285 | 1 | 287 | 0.0 | 575 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0648430 | Msa1337460 | 0.815976 | 7.015143e-52 | -8.615850e-47 |
Msa0719740 | Msa1337460 | 0.811003 | 8.701556e-51 | -8.615850e-47 |
Msa0802750 | Msa1337460 | 0.808440 | 3.094681e-50 | -8.615850e-47 |
Msa0841060 | Msa1337460 | 0.814146 | 1.786919e-51 | -8.615850e-47 |
Msa1265290 | Msa1337460 | 0.950199 | 2.692609e-108 | -8.615850e-47 |
Msa1337450 | Msa1337460 | 0.841217 | 5.433836e-58 | -8.615850e-47 |
Msa0383550 | Msa1337460 | 0.826092 | 3.279516e-54 | -8.615850e-47 |
Msa0418300 | Msa1337460 | 0.809196 | 2.132248e-50 | -8.615850e-47 |
Msa1004260 | Msa1337460 | -0.808357 | 3.222287e-50 | -8.615850e-47 |
Msa1127910 | Msa1337460 | 0.807297 | 5.415235e-50 | -8.615850e-47 |
Msa1218320 | Msa1337460 | 0.821369 | 4.188718e-53 | -8.615850e-47 |
Msa1218360 | Msa1337460 | 0.821978 | 3.027910e-53 | -8.615850e-47 |
Msa1221290 | Msa1337460 | 0.832246 | 1.054796e-55 | -8.615850e-47 |
Msa1221310 | Msa1337460 | 0.917651 | 4.094544e-86 | -8.615850e-47 |
Msa0510120 | Msa1337460 | 0.823378 | 1.430799e-53 | -8.615850e-47 |
Msa0581370 | Msa1337460 | 0.870432 | 1.465821e-66 | -8.615850e-47 |
Msa0581380 | Msa1337460 | 0.955589 | 2.142540e-113 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1337460 | MtrunA17_Chr4g0072671 | 97.213 | 287 | 6 | 1 | 1 | 285 | 1 | 287 | 0.0 | 575 |
Msa1337460 | MtrunA17_Chr4g0072611 | 82.796 | 279 | 43 | 3 | 5 | 283 | 7 | 280 | 1.02e-171 | 476 |
Msa1337460 | MtrunA17_Chr7g0258911 | 82.918 | 281 | 43 | 3 | 3 | 283 | 4 | 279 | 2.00e-168 | 467 |
Msa1337460 | MtrunA17_Chr4g0071341 | 77.736 | 265 | 58 | 1 | 20 | 284 | 19 | 282 | 1.32e-151 | 425 |
Msa1337460 | MtrunA17_Chr4g0072601 | 73.333 | 285 | 72 | 3 | 1 | 283 | 1 | 283 | 3.42e-150 | 421 |
Msa1337460 | MtrunA17_Chr2g0299061 | 70.463 | 281 | 76 | 3 | 7 | 283 | 9 | 286 | 4.59e-145 | 409 |
Msa1337460 | MtrunA17_Chr8g0377841 | 68.966 | 290 | 78 | 2 | 1 | 285 | 1 | 283 | 2.80e-143 | 404 |
Msa1337460 | MtrunA17_Chr3g0122021 | 70.175 | 285 | 75 | 2 | 1 | 283 | 1 | 277 | 1.57e-142 | 402 |
Msa1337460 | MtrunA17_Chr3g0122031 | 70.175 | 285 | 75 | 2 | 1 | 283 | 1 | 277 | 1.64e-142 | 402 |
Msa1337460 | MtrunA17_Chr4g0072681 | 75.610 | 246 | 52 | 4 | 47 | 285 | 1 | 245 | 6.71e-132 | 374 |
Msa1337460 | MtrunA17_Chr8g0389641 | 63.396 | 265 | 53 | 1 | 19 | 283 | 22 | 242 | 2.16e-120 | 345 |
Msa1337460 | MtrunA17_Chr6g0486581 | 52.797 | 286 | 129 | 4 | 1 | 283 | 1 | 283 | 4.01e-104 | 305 |
Msa1337460 | MtrunA17_Chr5g0443391 | 52.982 | 285 | 125 | 3 | 1 | 283 | 1 | 278 | 1.52e-102 | 301 |
Msa1337460 | MtrunA17_Chr6g0461761 | 52.778 | 288 | 129 | 3 | 3 | 285 | 4 | 289 | 4.53e-101 | 297 |
Msa1337460 | MtrunA17_Chr7g0252631 | 52.595 | 289 | 129 | 3 | 1 | 283 | 1 | 287 | 1.44e-100 | 296 |
Msa1337460 | MtrunA17_Chr7g0252621 | 52.595 | 289 | 129 | 3 | 1 | 283 | 1 | 287 | 4.29e-100 | 295 |
Msa1337460 | MtrunA17_Chr6g0461731 | 55.985 | 259 | 112 | 2 | 26 | 284 | 55 | 311 | 4.31e-100 | 295 |
Msa1337460 | MtrunA17_Chr7g0252601 | 54.580 | 262 | 109 | 3 | 26 | 283 | 32 | 287 | 1.42e-98 | 291 |
Msa1337460 | MtrunA17_Chr4g0054451 | 49.466 | 281 | 133 | 4 | 9 | 283 | 12 | 289 | 1.44e-98 | 291 |
Msa1337460 | MtrunA17_Chr3g0096651 | 53.053 | 262 | 116 | 3 | 23 | 283 | 27 | 282 | 1.65e-98 | 290 |
Msa1337460 | MtrunA17_Chr4g0054431 | 50.179 | 279 | 132 | 4 | 9 | 283 | 12 | 287 | 3.87e-98 | 290 |
Msa1337460 | MtrunA17_Chr2g0323161 | 47.603 | 292 | 140 | 6 | 1 | 284 | 1 | 287 | 8.81e-95 | 281 |
Msa1337460 | MtrunA17_Chr4g0023961 | 47.279 | 294 | 142 | 6 | 1 | 285 | 1 | 290 | 2.94e-93 | 277 |
Msa1337460 | MtrunA17_Chr1g0206681 | 48.375 | 277 | 133 | 4 | 14 | 284 | 20 | 292 | 1.56e-92 | 275 |
Msa1337460 | MtrunA17_Chr1g0206081 | 45.238 | 294 | 144 | 6 | 3 | 284 | 7 | 295 | 1.02e-85 | 258 |
Msa1337460 | MtrunA17_Chr8g0390201 | 56.633 | 196 | 81 | 2 | 91 | 283 | 15 | 209 | 4.24e-78 | 236 |
Msa1337460 | MtrunA17_Chr8g0340001 | 46.639 | 238 | 106 | 6 | 57 | 285 | 8 | 233 | 9.14e-68 | 210 |
Msa1337460 | MtrunA17_Chr4g0072641 | 72.868 | 129 | 19 | 1 | 156 | 284 | 37 | 149 | 7.62e-63 | 195 |
Msa1337460 | MtrunA17_Chr4g0028221 | 41.948 | 267 | 136 | 7 | 25 | 283 | 49 | 304 | 3.69e-62 | 198 |
Msa1337460 | MtrunA17_Chr7g0264731 | 40.000 | 280 | 149 | 7 | 13 | 284 | 24 | 292 | 8.81e-62 | 197 |
Msa1337460 | MtrunA17_Chr2g0327411 | 40.520 | 269 | 138 | 8 | 25 | 283 | 53 | 309 | 3.08e-60 | 193 |
Msa1337460 | MtrunA17_Chr1g0180451 | 37.457 | 291 | 163 | 7 | 1 | 283 | 15 | 294 | 1.88e-59 | 191 |
Msa1337460 | MtrunA17_Chr2g0303861 | 39.716 | 282 | 157 | 7 | 7 | 285 | 10 | 281 | 6.36e-58 | 187 |
Msa1337460 | MtrunA17_Chr8g0375981 | 35.017 | 297 | 174 | 8 | 1 | 284 | 1 | 291 | 2.82e-55 | 181 |
Msa1337460 | MtrunA17_Chr1g0161951 | 39.326 | 267 | 147 | 8 | 26 | 284 | 33 | 292 | 1.54e-54 | 179 |
Msa1337460 | MtrunA17_Chr2g0303721 | 37.234 | 282 | 153 | 8 | 7 | 281 | 11 | 275 | 7.71e-54 | 176 |
Msa1337460 | MtrunA17_Chr7g0235541 | 45.872 | 218 | 100 | 7 | 73 | 283 | 1 | 207 | 9.82e-54 | 174 |
Msa1337460 | MtrunA17_Chr8g0365231 | 36.431 | 269 | 148 | 7 | 30 | 283 | 50 | 310 | 1.03e-50 | 169 |
Msa1337460 | MtrunA17_Chr5g0410621 | 35.448 | 268 | 159 | 8 | 26 | 283 | 42 | 305 | 4.70e-48 | 163 |
Msa1337460 | MtrunA17_Chr8g0382041 | 34.799 | 273 | 153 | 11 | 26 | 284 | 34 | 295 | 1.06e-41 | 146 |
Msa1337460 | MtrunA17_Chr4g0072631 | 68.056 | 72 | 23 | 0 | 2 | 73 | 7 | 78 | 2.78e-25 | 97.1 |
Msa1337460 | MtrunA17_Chr8g0374231 | 45.370 | 108 | 48 | 6 | 182 | 284 | 1 | 102 | 3.37e-22 | 89.0 |
Msa1337460 | MtrunA17_Chr8g0390181 | 49.383 | 81 | 39 | 1 | 13 | 93 | 15 | 93 | 5.45e-18 | 77.4 |
Msa1337460 | MtrunA17_Chr8g0350711 | 33.333 | 177 | 110 | 4 | 45 | 219 | 51 | 221 | 4.30e-16 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1337460 | AT4G25810.1 | 75.704 | 284 | 65 | 3 | 1 | 283 | 3 | 283 | 8.18e-160 | 446 |
Msa1337460 | AT5G57560.1 | 73.145 | 283 | 71 | 3 | 3 | 283 | 2 | 281 | 8.16e-156 | 436 |
Msa1337460 | AT5G57550.1 | 67.820 | 289 | 84 | 3 | 1 | 285 | 1 | 284 | 3.96e-147 | 414 |
Msa1337460 | AT4G30270.1 | 69.314 | 277 | 69 | 2 | 8 | 284 | 6 | 266 | 2.35e-144 | 406 |
Msa1337460 | AT2G18800.1 | 65.085 | 295 | 89 | 4 | 4 | 284 | 3 | 297 | 2.05e-139 | 395 |
Msa1337460 | AT5G48070.1 | 64.875 | 279 | 89 | 4 | 7 | 284 | 12 | 282 | 6.28e-139 | 393 |
Msa1337460 | AT3G23730.1 | 66.429 | 280 | 88 | 3 | 9 | 283 | 8 | 286 | 2.08e-137 | 390 |
Msa1337460 | AT4G14130.1 | 65.603 | 282 | 96 | 1 | 2 | 283 | 4 | 284 | 1.23e-135 | 385 |
Msa1337460 | AT5G57530.1 | 67.164 | 268 | 78 | 3 | 20 | 283 | 21 | 282 | 6.21e-132 | 375 |
Msa1337460 | AT4G30280.1 | 63.860 | 285 | 94 | 4 | 3 | 284 | 4 | 282 | 2.56e-129 | 369 |
Msa1337460 | AT5G57540.1 | 65.399 | 263 | 85 | 2 | 23 | 283 | 23 | 281 | 1.63e-128 | 367 |
Msa1337460 | AT4G30290.1 | 63.860 | 285 | 94 | 4 | 1 | 284 | 1 | 277 | 3.42e-128 | 366 |
Msa1337460 | AT4G25820.1 | 66.038 | 265 | 88 | 1 | 19 | 283 | 23 | 285 | 2.27e-127 | 364 |
Msa1337460 | AT1G65310.2 | 65.299 | 268 | 86 | 3 | 18 | 284 | 43 | 304 | 1.14e-126 | 363 |
Msa1337460 | AT1G65310.1 | 65.299 | 268 | 86 | 3 | 18 | 284 | 21 | 282 | 1.64e-126 | 362 |
Msa1337460 | AT5G13870.2 | 52.448 | 286 | 131 | 3 | 1 | 283 | 4 | 287 | 2.91e-99 | 293 |
Msa1337460 | AT5G13870.1 | 52.448 | 286 | 131 | 3 | 1 | 283 | 4 | 287 | 2.91e-99 | 293 |
Msa1337460 | AT5G13870.3 | 52.448 | 286 | 131 | 3 | 1 | 283 | 4 | 287 | 2.91e-99 | 293 |
Msa1337460 | AT5G65730.1 | 47.292 | 277 | 142 | 3 | 8 | 283 | 17 | 290 | 6.07e-96 | 285 |
Msa1337460 | AT4G28850.1 | 48.443 | 289 | 140 | 5 | 1 | 284 | 4 | 288 | 1.93e-95 | 283 |
Msa1337460 | AT2G06850.1 | 50.177 | 283 | 134 | 3 | 1 | 283 | 15 | 290 | 5.72e-94 | 280 |
Msa1337460 | AT4G37800.1 | 48.571 | 280 | 140 | 3 | 6 | 284 | 14 | 290 | 7.76e-94 | 279 |
Msa1337460 | AT4G03210.1 | 47.902 | 286 | 133 | 6 | 7 | 285 | 10 | 286 | 7.99e-93 | 276 |
Msa1337460 | AT2G14620.1 | 48.551 | 276 | 134 | 5 | 14 | 284 | 23 | 295 | 4.16e-89 | 267 |
Msa1337460 | AT2G06850.2 | 56.140 | 228 | 98 | 2 | 56 | 283 | 5 | 230 | 5.99e-88 | 262 |
Msa1337460 | AT4G03210.2 | 52.941 | 255 | 101 | 7 | 38 | 285 | 16 | 258 | 1.15e-87 | 262 |
Msa1337460 | AT1G11545.1 | 47.475 | 297 | 135 | 8 | 2 | 284 | 11 | 300 | 9.56e-87 | 261 |
Msa1337460 | AT4G13090.1 | 45.936 | 283 | 142 | 6 | 8 | 283 | 10 | 288 | 1.37e-78 | 240 |
Msa1337460 | AT2G14620.2 | 50.649 | 231 | 108 | 4 | 57 | 284 | 18 | 245 | 3.07e-78 | 238 |
Msa1337460 | AT2G14620.3 | 51.351 | 222 | 102 | 4 | 66 | 284 | 16 | 234 | 2.24e-76 | 233 |
Msa1337460 | AT4G13080.1 | 48.062 | 258 | 129 | 5 | 26 | 283 | 39 | 291 | 1.14e-75 | 233 |
Msa1337460 | AT3G25050.1 | 45.211 | 261 | 134 | 6 | 26 | 283 | 35 | 289 | 2.43e-74 | 229 |
Msa1337460 | AT2G36870.1 | 41.935 | 279 | 143 | 7 | 13 | 283 | 30 | 297 | 2.10e-63 | 202 |
Msa1337460 | AT3G44990.1 | 42.481 | 266 | 134 | 7 | 26 | 283 | 39 | 293 | 4.12e-61 | 196 |
Msa1337460 | AT1G10550.1 | 36.015 | 261 | 150 | 6 | 37 | 283 | 52 | 309 | 5.13e-52 | 172 |
Msa1337460 | AT1G32170.1 | 34.333 | 300 | 170 | 10 | 3 | 284 | 4 | 294 | 2.26e-51 | 172 |
Msa1337460 | AT1G14720.1 | 35.581 | 267 | 160 | 7 | 25 | 284 | 30 | 291 | 2.68e-49 | 166 |
Msa1337460 | AT2G01850.1 | 31.864 | 295 | 186 | 7 | 1 | 284 | 1 | 291 | 4.08e-47 | 160 |
Msa1337460 | AT3G48580.1 | 36.653 | 251 | 141 | 7 | 33 | 283 | 41 | 273 | 1.78e-44 | 152 |
Msa1337460 | AT4G18990.1 | 34.164 | 281 | 156 | 9 | 26 | 284 | 40 | 313 | 2.58e-43 | 151 |
Msa1337460 | AT3G48580.3 | 35.526 | 228 | 130 | 6 | 56 | 283 | 4 | 214 | 1.21e-38 | 135 |
Msa1337460 | AT4G18990.2 | 34.722 | 216 | 113 | 8 | 91 | 284 | 30 | 239 | 9.39e-35 | 127 |
Msa1337460 | AT2G36870.2 | 43.709 | 151 | 75 | 3 | 13 | 155 | 30 | 178 | 5.82e-33 | 119 |
Msa1337460 | AT3G48580.2 | 31.474 | 251 | 134 | 8 | 33 | 283 | 41 | 253 | 1.05e-27 | 108 |
Find 64 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGGCGTTGTTGAGTATTT+TGG | 0.226569 | tig0001526:-115201 | None:intergenic |
CTGTAGATGGAACTCCAATT+AGG | 0.235182 | tig0001526:+115781 | Msa1337460:CDS |
CTCCATTTACCGCTTCTTAC+AGG | 0.238448 | tig0001526:+115934 | Msa1337460:CDS |
ATGTTCTTGAATTCCCTAAT+TGG | 0.259290 | tig0001526:-115795 | None:intergenic |
TGAGAATCTATTCTAGTCTT+TGG | 0.265403 | tig0001526:+115856 | Msa1337460:CDS |
TGCTTCTTATTCCTCTGCTT+TGG | 0.286665 | tig0001526:+115111 | Msa1337460:CDS |
GAGATAGACTTTGAATTCTT+AGG | 0.299139 | tig0001526:+115494 | Msa1337460:CDS |
TTCCTGTAAGAAGCGGTAAA+TGG | 0.328030 | tig0001526:-115936 | None:intergenic |
GTCTTTGGAATGCTGATGAT+TGG | 0.342081 | tig0001526:+115871 | Msa1337460:CDS |
TTCACACATACTCAATTCTC+TGG | 0.375632 | tig0001526:+115621 | Msa1337460:CDS |
TGTAGATGGAACTCCAATTA+GGG | 0.398243 | tig0001526:+115782 | Msa1337460:CDS |
CTTGACAAAGCCTCTGGCTC+TGG | 0.398860 | tig0001526:+115239 | Msa1337460:CDS |
GTTCCATGTACAAGCATTGT+TGG | 0.399945 | tig0001526:-115967 | None:intergenic |
ATCTAGTGAGTGCATTCAAC+TGG | 0.406472 | tig0001526:-116149 | None:intergenic |
ATGCAGATTAAGCTTGTTCC+AGG | 0.407701 | tig0001526:+115302 | Msa1337460:CDS |
GCTCTCTGTTACCTTTGCCT+TGG | 0.439694 | tig0001526:-115562 | None:intergenic |
AGACTAGAATAGATTCTCAT+TGG | 0.441045 | tig0001526:-115852 | None:intergenic |
AGAAGCGGTAAATGGAGCTT+TGG | 0.460589 | tig0001526:-115928 | None:intergenic |
TCACAACAGCTTGACTCAAC+AGG | 0.461793 | tig0001526:+116044 | Msa1337460:CDS |
AGATCTTAGTCATATACTAT+AGG | 0.464222 | tig0001526:+116168 | Msa1337460:exon |
TAGAATAGATTCTCATTGGT+TGG | 0.468992 | tig0001526:-115848 | None:intergenic |
TCTTTGGAATGCTGATGATT+GGG | 0.473720 | tig0001526:+115872 | Msa1337460:CDS |
CTTGTTCCAGGCAACTCTGC+TGG | 0.477831 | tig0001526:+115314 | Msa1337460:CDS |
CTGTCTCTTGACAAAGCCTC+TGG | 0.485728 | tig0001526:+115233 | Msa1337460:CDS |
CCCATGTAATCTGAAAATCT+TGG | 0.491907 | tig0001526:-115166 | None:intergenic |
ACATTGGTGTGAAGGATGTA+AGG | 0.496043 | tig0001526:-115533 | None:intergenic |
CAGGTCTGCAGAGGCTGAGG+TGG | 0.507933 | tig0001526:+116063 | Msa1337460:CDS |
GTGGACTTGTTAAGACAGAT+TGG | 0.508499 | tig0001526:+115904 | Msa1337460:CDS |
CAACAGGTCTGCAGAGGCTG+AGG | 0.508970 | tig0001526:+116060 | Msa1337460:CDS |
TTTCAGATTACATGGGGAGA+TGG | 0.522270 | tig0001526:+115173 | Msa1337460:CDS |
ACAGTGCCAGCAGAGTTGCC+TGG | 0.527429 | tig0001526:-115320 | None:intergenic |
AAGAGACAGAGTAAGAAGAT+TGG | 0.527904 | tig0001526:-115219 | None:intergenic |
TCACTTCAGCTATCATCAAA+AGG | 0.530973 | tig0001526:+115458 | Msa1337460:intron |
ATGCCAACAATGCTTGTACA+TGG | 0.537452 | tig0001526:+115964 | Msa1337460:CDS |
CATTCAACTGGAAGGCCTTG+TGG | 0.552461 | tig0001526:-116137 | None:intergenic |
CACACCAATGTGTTTAGCCA+AGG | 0.563595 | tig0001526:+115545 | Msa1337460:CDS |
CAAAACCCTCTGCTTCCTCA+TGG | 0.566913 | tig0001526:+116018 | Msa1337460:CDS |
ATCATCAAAAGGAGGTGCAT+GGG | 0.570048 | tig0001526:+115469 | Msa1337460:CDS |
TATCATCAAAAGGAGGTGCA+TGG | 0.582020 | tig0001526:+115468 | Msa1337460:CDS |
CTGCAGTTGGGTCAAACCAA+AGG | 0.586715 | tig0001526:-115595 | None:intergenic |
AATTAGGGAATTCAAGAACA+TGG | 0.587989 | tig0001526:+115797 | Msa1337460:CDS |
TTTGCCTTGGCTAAACACAT+TGG | 0.588875 | tig0001526:-115549 | None:intergenic |
AGGTCTGCAGAGGCTGAGGT+GGG | 0.596207 | tig0001526:+116064 | Msa1337460:CDS |
GATGATTGGGCTACAAGAGG+TGG | 0.596350 | tig0001526:+115885 | Msa1337460:CDS |
ATTAATGTAGCATGTGCTGC+TGG | 0.599927 | tig0001526:+115134 | Msa1337460:CDS |
GGATTGAAAGCCAGAGCCAG+AGG | 0.605791 | tig0001526:-115249 | None:intergenic |
ATGTGTGAAAATCTGCAGTT+GGG | 0.606525 | tig0001526:-115607 | None:intergenic |
GGCTAAACACATTGGTGTGA+AGG | 0.607001 | tig0001526:-115541 | None:intergenic |
AATGCTTGTACATGGAACAA+TGG | 0.607069 | tig0001526:+115972 | Msa1337460:CDS |
AGTACTTACACAATACGTTG+TGG | 0.616337 | tig0001526:-115647 | None:intergenic |
TATGTGTGAAAATCTGCAGT+TGG | 0.616665 | tig0001526:-115608 | None:intergenic |
TTGACTCAACAGGTCTGCAG+AGG | 0.621733 | tig0001526:+116054 | Msa1337460:CDS |
TTCAAGAACATGGAATCAAG+TGG | 0.625602 | tig0001526:+115807 | Msa1337460:CDS |
TGATAGCCATGAGGAAGCAG+AGG | 0.629740 | tig0001526:-116024 | None:intergenic |
AGTGAGTGCATTCAACTGGA+AGG | 0.634779 | tig0001526:-116145 | None:intergenic |
ATTGAAATTCCTGTAAGAAG+CGG | 0.652103 | tig0001526:-115943 | None:intergenic |
GAATTCTTAGGAAATTTGAG+TGG | 0.658307 | tig0001526:+115506 | Msa1337460:CDS |
AATGTGTTTAGCCAAGGCAA+AGG | 0.659745 | tig0001526:+115551 | Msa1337460:CDS |
GATAGCCATGAGGAAGCAGA+GGG | 0.664376 | tig0001526:-116023 | None:intergenic |
CTTCAGCTATCATCAAAAGG+AGG | 0.677139 | tig0001526:+115461 | Msa1337460:intron |
GCTGATGATTGGGCTACAAG+AGG | 0.684485 | tig0001526:+115882 | Msa1337460:CDS |
GCTACATTAATCCAAAGCAG+AGG | 0.687490 | tig0001526:-115122 | None:intergenic |
AAGCTGTTGTGATAGCCATG+AGG | 0.744355 | tig0001526:-116033 | None:intergenic |
GATAAGAAGAGATTTCCACA+AGG | 0.790444 | tig0001526:+116122 | Msa1337460:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCCAAAAATGAATACTTATT+TGG | + | tig0001526:115269-115288 | Msa1337460:CDS | 20.0% |
!! | AAAAAAAACATTACTTGTGT+TGG | + | tig0001526:115713-115732 | Msa1337460:intron | 20.0% |
!! | TCCAAAAATGAATACTTATT+TGG | + | tig0001526:115269-115288 | Msa1337460:CDS | 20.0% |
!! | AAAAAAAACATTACTTGTGT+TGG | + | tig0001526:115713-115732 | Msa1337460:intron | 20.0% |
!! | GCCAAATAAGTATTCATTTT+TGG | - | tig0001526:115273-115292 | None:intergenic | 25.0% |
! | AGATCTTAGTCATATACTAT+AGG | + | tig0001526:116168-116187 | Msa1337460:exon | 25.0% |
!! | GCCAAATAAGTATTCATTTT+TGG | - | tig0001526:115273-115292 | None:intergenic | 25.0% |
! | AGATCTTAGTCATATACTAT+AGG | + | tig0001526:116168-116187 | Msa1337460:exon | 25.0% |
! | ACCAAGATTTTCAGATTACA+TGG | + | tig0001526:115165-115184 | Msa1337460:CDS | 30.0% |
! | CCAAGATTTTCAGATTACAT+GGG | + | tig0001526:115166-115185 | Msa1337460:CDS | 30.0% |
! | CAAGATTTTCAGATTACATG+GGG | + | tig0001526:115167-115186 | Msa1337460:CDS | 30.0% |
GAGATAGACTTTGAATTCTT+AGG | + | tig0001526:115494-115513 | Msa1337460:CDS | 30.0% | |
GAATTCTTAGGAAATTTGAG+TGG | + | tig0001526:115506-115525 | Msa1337460:CDS | 30.0% | |
!! | TTTTTCAGTTTCTCTGTAGA+TGG | + | tig0001526:115768-115787 | Msa1337460:intron | 30.0% |
ATGTTCTTGAATTCCCTAAT+TGG | - | tig0001526:115798-115817 | None:intergenic | 30.0% | |
AATTAGGGAATTCAAGAACA+TGG | + | tig0001526:115797-115816 | Msa1337460:CDS | 30.0% | |
!!! | ATTCTCATTGGTTGGTTTTT+GGG | - | tig0001526:115843-115862 | None:intergenic | 30.0% |
TAGAATAGATTCTCATTGGT+TGG | - | tig0001526:115851-115870 | None:intergenic | 30.0% | |
AGACTAGAATAGATTCTCAT+TGG | - | tig0001526:115855-115874 | None:intergenic | 30.0% | |
! | TGAGAATCTATTCTAGTCTT+TGG | + | tig0001526:115856-115875 | Msa1337460:CDS | 30.0% |
ATTGAAATTCCTGTAAGAAG+CGG | - | tig0001526:115946-115965 | None:intergenic | 30.0% | |
! | ACCAAGATTTTCAGATTACA+TGG | + | tig0001526:115165-115184 | Msa1337460:CDS | 30.0% |
! | CCAAGATTTTCAGATTACAT+GGG | + | tig0001526:115166-115185 | Msa1337460:CDS | 30.0% |
! | CAAGATTTTCAGATTACATG+GGG | + | tig0001526:115167-115186 | Msa1337460:CDS | 30.0% |
GAGATAGACTTTGAATTCTT+AGG | + | tig0001526:115494-115513 | Msa1337460:CDS | 30.0% | |
GAATTCTTAGGAAATTTGAG+TGG | + | tig0001526:115506-115525 | Msa1337460:CDS | 30.0% | |
!! | TTTTTCAGTTTCTCTGTAGA+TGG | + | tig0001526:115768-115787 | Msa1337460:intron | 30.0% |
ATGTTCTTGAATTCCCTAAT+TGG | - | tig0001526:115798-115817 | None:intergenic | 30.0% | |
AATTAGGGAATTCAAGAACA+TGG | + | tig0001526:115797-115816 | Msa1337460:CDS | 30.0% | |
!!! | ATTCTCATTGGTTGGTTTTT+GGG | - | tig0001526:115843-115862 | None:intergenic | 30.0% |
TAGAATAGATTCTCATTGGT+TGG | - | tig0001526:115851-115870 | None:intergenic | 30.0% | |
AGACTAGAATAGATTCTCAT+TGG | - | tig0001526:115855-115874 | None:intergenic | 30.0% | |
! | TGAGAATCTATTCTAGTCTT+TGG | + | tig0001526:115856-115875 | Msa1337460:CDS | 30.0% |
ATTGAAATTCCTGTAAGAAG+CGG | - | tig0001526:115946-115965 | None:intergenic | 30.0% | |
CCCATGTAATCTGAAAATCT+TGG | - | tig0001526:115169-115188 | None:intergenic | 35.0% | |
! | ATTGGCGTTGTTGAGTATTT+TGG | - | tig0001526:115204-115223 | None:intergenic | 35.0% |
AAGAGACAGAGTAAGAAGAT+TGG | - | tig0001526:115222-115241 | None:intergenic | 35.0% | |
TCACTTCAGCTATCATCAAA+AGG | + | tig0001526:115458-115477 | Msa1337460:intron | 35.0% | |
! | GAGAGCAACAATTTTACCTT+TGG | + | tig0001526:115579-115598 | Msa1337460:CDS | 35.0% |
ATGTGTGAAAATCTGCAGTT+GGG | - | tig0001526:115610-115629 | None:intergenic | 35.0% | |
TATGTGTGAAAATCTGCAGT+TGG | - | tig0001526:115611-115630 | None:intergenic | 35.0% | |
TTCACACATACTCAATTCTC+TGG | + | tig0001526:115621-115640 | Msa1337460:CDS | 35.0% | |
AGTACTTACACAATACGTTG+TGG | - | tig0001526:115650-115669 | None:intergenic | 35.0% | |
TGTAGATGGAACTCCAATTA+GGG | + | tig0001526:115782-115801 | Msa1337460:CDS | 35.0% | |
TTCAAGAACATGGAATCAAG+TGG | + | tig0001526:115807-115826 | Msa1337460:CDS | 35.0% | |
!!! | TTCTCATTGGTTGGTTTTTG+GGG | - | tig0001526:115842-115861 | None:intergenic | 35.0% |
!!! | GATTCTCATTGGTTGGTTTT+TGG | - | tig0001526:115844-115863 | None:intergenic | 35.0% |
!! | TCTTTGGAATGCTGATGATT+GGG | + | tig0001526:115872-115891 | Msa1337460:CDS | 35.0% |
AATGCTTGTACATGGAACAA+TGG | + | tig0001526:115972-115991 | Msa1337460:CDS | 35.0% | |
GATAAGAAGAGATTTCCACA+AGG | + | tig0001526:116122-116141 | Msa1337460:CDS | 35.0% | |
CCCATGTAATCTGAAAATCT+TGG | - | tig0001526:115169-115188 | None:intergenic | 35.0% | |
! | ATTGGCGTTGTTGAGTATTT+TGG | - | tig0001526:115204-115223 | None:intergenic | 35.0% |
AAGAGACAGAGTAAGAAGAT+TGG | - | tig0001526:115222-115241 | None:intergenic | 35.0% | |
TCACTTCAGCTATCATCAAA+AGG | + | tig0001526:115458-115477 | Msa1337460:intron | 35.0% | |
! | GAGAGCAACAATTTTACCTT+TGG | + | tig0001526:115579-115598 | Msa1337460:CDS | 35.0% |
ATGTGTGAAAATCTGCAGTT+GGG | - | tig0001526:115610-115629 | None:intergenic | 35.0% | |
TATGTGTGAAAATCTGCAGT+TGG | - | tig0001526:115611-115630 | None:intergenic | 35.0% | |
TTCACACATACTCAATTCTC+TGG | + | tig0001526:115621-115640 | Msa1337460:CDS | 35.0% | |
AGTACTTACACAATACGTTG+TGG | - | tig0001526:115650-115669 | None:intergenic | 35.0% | |
TGTAGATGGAACTCCAATTA+GGG | + | tig0001526:115782-115801 | Msa1337460:CDS | 35.0% | |
TTCAAGAACATGGAATCAAG+TGG | + | tig0001526:115807-115826 | Msa1337460:CDS | 35.0% | |
!!! | TTCTCATTGGTTGGTTTTTG+GGG | - | tig0001526:115842-115861 | None:intergenic | 35.0% |
!!! | GATTCTCATTGGTTGGTTTT+TGG | - | tig0001526:115844-115863 | None:intergenic | 35.0% |
!! | TCTTTGGAATGCTGATGATT+GGG | + | tig0001526:115872-115891 | Msa1337460:CDS | 35.0% |
AATGCTTGTACATGGAACAA+TGG | + | tig0001526:115972-115991 | Msa1337460:CDS | 35.0% | |
GATAAGAAGAGATTTCCACA+AGG | + | tig0001526:116122-116141 | Msa1337460:CDS | 35.0% | |
TGCTTCTTATTCCTCTGCTT+TGG | + | tig0001526:115111-115130 | Msa1337460:CDS | 40.0% | |
GCTACATTAATCCAAAGCAG+AGG | - | tig0001526:115125-115144 | None:intergenic | 40.0% | |
ATTAATGTAGCATGTGCTGC+TGG | + | tig0001526:115134-115153 | Msa1337460:CDS | 40.0% | |
TTTCAGATTACATGGGGAGA+TGG | + | tig0001526:115173-115192 | Msa1337460:CDS | 40.0% | |
! | ATGCAGATTAAGCTTGTTCC+AGG | + | tig0001526:115302-115321 | Msa1337460:CDS | 40.0% |
CTTCAGCTATCATCAAAAGG+AGG | + | tig0001526:115461-115480 | Msa1337460:intron | 40.0% | |
! | TATCATCAAAAGGAGGTGCA+TGG | + | tig0001526:115468-115487 | Msa1337460:CDS | 40.0% |
! | ATCATCAAAAGGAGGTGCAT+GGG | + | tig0001526:115469-115488 | Msa1337460:CDS | 40.0% |
ACATTGGTGTGAAGGATGTA+AGG | - | tig0001526:115536-115555 | None:intergenic | 40.0% | |
TTTGCCTTGGCTAAACACAT+TGG | - | tig0001526:115552-115571 | None:intergenic | 40.0% | |
AATGTGTTTAGCCAAGGCAA+AGG | + | tig0001526:115551-115570 | Msa1337460:CDS | 40.0% | |
CTGTAGATGGAACTCCAATT+AGG | + | tig0001526:115781-115800 | Msa1337460:CDS | 40.0% | |
!!! | ATTGGTTGGTTTTTGGGGAA+TGG | - | tig0001526:115837-115856 | None:intergenic | 40.0% |
!! | GTCTTTGGAATGCTGATGAT+TGG | + | tig0001526:115871-115890 | Msa1337460:CDS | 40.0% |
!! | GTGGACTTGTTAAGACAGAT+TGG | + | tig0001526:115904-115923 | Msa1337460:CDS | 40.0% |
TTCCTGTAAGAAGCGGTAAA+TGG | - | tig0001526:115939-115958 | None:intergenic | 40.0% | |
ATGCCAACAATGCTTGTACA+TGG | + | tig0001526:115964-115983 | Msa1337460:CDS | 40.0% | |
! | GTTCCATGTACAAGCATTGT+TGG | - | tig0001526:115970-115989 | None:intergenic | 40.0% |
ATCTAGTGAGTGCATTCAAC+TGG | - | tig0001526:116152-116171 | None:intergenic | 40.0% | |
TGCTTCTTATTCCTCTGCTT+TGG | + | tig0001526:115111-115130 | Msa1337460:CDS | 40.0% | |
GCTACATTAATCCAAAGCAG+AGG | - | tig0001526:115125-115144 | None:intergenic | 40.0% | |
ATTAATGTAGCATGTGCTGC+TGG | + | tig0001526:115134-115153 | Msa1337460:CDS | 40.0% | |
TTTCAGATTACATGGGGAGA+TGG | + | tig0001526:115173-115192 | Msa1337460:CDS | 40.0% | |
! | ATGCAGATTAAGCTTGTTCC+AGG | + | tig0001526:115302-115321 | Msa1337460:CDS | 40.0% |
CTTCAGCTATCATCAAAAGG+AGG | + | tig0001526:115461-115480 | Msa1337460:intron | 40.0% | |
! | TATCATCAAAAGGAGGTGCA+TGG | + | tig0001526:115468-115487 | Msa1337460:CDS | 40.0% |
! | ATCATCAAAAGGAGGTGCAT+GGG | + | tig0001526:115469-115488 | Msa1337460:CDS | 40.0% |
ACATTGGTGTGAAGGATGTA+AGG | - | tig0001526:115536-115555 | None:intergenic | 40.0% | |
TTTGCCTTGGCTAAACACAT+TGG | - | tig0001526:115552-115571 | None:intergenic | 40.0% | |
AATGTGTTTAGCCAAGGCAA+AGG | + | tig0001526:115551-115570 | Msa1337460:CDS | 40.0% | |
CTGTAGATGGAACTCCAATT+AGG | + | tig0001526:115781-115800 | Msa1337460:CDS | 40.0% | |
!!! | ATTGGTTGGTTTTTGGGGAA+TGG | - | tig0001526:115837-115856 | None:intergenic | 40.0% |
!! | GTCTTTGGAATGCTGATGAT+TGG | + | tig0001526:115871-115890 | Msa1337460:CDS | 40.0% |
!! | GTGGACTTGTTAAGACAGAT+TGG | + | tig0001526:115904-115923 | Msa1337460:CDS | 40.0% |
TTCCTGTAAGAAGCGGTAAA+TGG | - | tig0001526:115939-115958 | None:intergenic | 40.0% | |
ATGCCAACAATGCTTGTACA+TGG | + | tig0001526:115964-115983 | Msa1337460:CDS | 40.0% | |
! | GTTCCATGTACAAGCATTGT+TGG | - | tig0001526:115970-115989 | None:intergenic | 40.0% |
ATCTAGTGAGTGCATTCAAC+TGG | - | tig0001526:116152-116171 | None:intergenic | 40.0% | |
GGCTAAACACATTGGTGTGA+AGG | - | tig0001526:115544-115563 | None:intergenic | 45.0% | |
CACACCAATGTGTTTAGCCA+AGG | + | tig0001526:115545-115564 | Msa1337460:CDS | 45.0% | |
AGAAGCGGTAAATGGAGCTT+TGG | - | tig0001526:115931-115950 | None:intergenic | 45.0% | |
CTCCATTTACCGCTTCTTAC+AGG | + | tig0001526:115934-115953 | Msa1337460:CDS | 45.0% | |
AAGCTGTTGTGATAGCCATG+AGG | - | tig0001526:116036-116055 | None:intergenic | 45.0% | |
TCACAACAGCTTGACTCAAC+AGG | + | tig0001526:116044-116063 | Msa1337460:CDS | 45.0% | |
AGTGAGTGCATTCAACTGGA+AGG | - | tig0001526:116148-116167 | None:intergenic | 45.0% | |
GGCTAAACACATTGGTGTGA+AGG | - | tig0001526:115544-115563 | None:intergenic | 45.0% | |
CACACCAATGTGTTTAGCCA+AGG | + | tig0001526:115545-115564 | Msa1337460:CDS | 45.0% | |
AGAAGCGGTAAATGGAGCTT+TGG | - | tig0001526:115931-115950 | None:intergenic | 45.0% | |
CTCCATTTACCGCTTCTTAC+AGG | + | tig0001526:115934-115953 | Msa1337460:CDS | 45.0% | |
AAGCTGTTGTGATAGCCATG+AGG | - | tig0001526:116036-116055 | None:intergenic | 45.0% | |
TCACAACAGCTTGACTCAAC+AGG | + | tig0001526:116044-116063 | Msa1337460:CDS | 45.0% | |
AGTGAGTGCATTCAACTGGA+AGG | - | tig0001526:116148-116167 | None:intergenic | 45.0% | |
CTGTCTCTTGACAAAGCCTC+TGG | + | tig0001526:115233-115252 | Msa1337460:CDS | 50.0% | |
GCTCTCTGTTACCTTTGCCT+TGG | - | tig0001526:115565-115584 | None:intergenic | 50.0% | |
CTGCAGTTGGGTCAAACCAA+AGG | - | tig0001526:115598-115617 | None:intergenic | 50.0% | |
GCTGATGATTGGGCTACAAG+AGG | + | tig0001526:115882-115901 | Msa1337460:CDS | 50.0% | |
GATGATTGGGCTACAAGAGG+TGG | + | tig0001526:115885-115904 | Msa1337460:CDS | 50.0% | |
CAAAACCCTCTGCTTCCTCA+TGG | + | tig0001526:116018-116037 | Msa1337460:CDS | 50.0% | |
GATAGCCATGAGGAAGCAGA+GGG | - | tig0001526:116026-116045 | None:intergenic | 50.0% | |
TGATAGCCATGAGGAAGCAG+AGG | - | tig0001526:116027-116046 | None:intergenic | 50.0% | |
TTGACTCAACAGGTCTGCAG+AGG | + | tig0001526:116054-116073 | Msa1337460:CDS | 50.0% | |
CATTCAACTGGAAGGCCTTG+TGG | - | tig0001526:116140-116159 | None:intergenic | 50.0% | |
CTGTCTCTTGACAAAGCCTC+TGG | + | tig0001526:115233-115252 | Msa1337460:CDS | 50.0% | |
GCTCTCTGTTACCTTTGCCT+TGG | - | tig0001526:115565-115584 | None:intergenic | 50.0% | |
CTGCAGTTGGGTCAAACCAA+AGG | - | tig0001526:115598-115617 | None:intergenic | 50.0% | |
GCTGATGATTGGGCTACAAG+AGG | + | tig0001526:115882-115901 | Msa1337460:CDS | 50.0% | |
GATGATTGGGCTACAAGAGG+TGG | + | tig0001526:115885-115904 | Msa1337460:CDS | 50.0% | |
CAAAACCCTCTGCTTCCTCA+TGG | + | tig0001526:116018-116037 | Msa1337460:CDS | 50.0% | |
GATAGCCATGAGGAAGCAGA+GGG | - | tig0001526:116026-116045 | None:intergenic | 50.0% | |
TGATAGCCATGAGGAAGCAG+AGG | - | tig0001526:116027-116046 | None:intergenic | 50.0% | |
TTGACTCAACAGGTCTGCAG+AGG | + | tig0001526:116054-116073 | Msa1337460:CDS | 50.0% | |
CATTCAACTGGAAGGCCTTG+TGG | - | tig0001526:116140-116159 | None:intergenic | 50.0% | |
! | CTTGACAAAGCCTCTGGCTC+TGG | + | tig0001526:115239-115258 | Msa1337460:CDS | 55.0% |
GGATTGAAAGCCAGAGCCAG+AGG | - | tig0001526:115252-115271 | None:intergenic | 55.0% | |
CTTGTTCCAGGCAACTCTGC+TGG | + | tig0001526:115314-115333 | Msa1337460:CDS | 55.0% | |
! | CTTGACAAAGCCTCTGGCTC+TGG | + | tig0001526:115239-115258 | Msa1337460:CDS | 55.0% |
GGATTGAAAGCCAGAGCCAG+AGG | - | tig0001526:115252-115271 | None:intergenic | 55.0% | |
CTTGTTCCAGGCAACTCTGC+TGG | + | tig0001526:115314-115333 | Msa1337460:CDS | 55.0% | |
ACAGTGCCAGCAGAGTTGCC+TGG | - | tig0001526:115323-115342 | None:intergenic | 60.0% | |
CAACAGGTCTGCAGAGGCTG+AGG | + | tig0001526:116060-116079 | Msa1337460:CDS | 60.0% | |
AGGTCTGCAGAGGCTGAGGT+GGG | + | tig0001526:116064-116083 | Msa1337460:CDS | 60.0% | |
ACAGTGCCAGCAGAGTTGCC+TGG | - | tig0001526:115323-115342 | None:intergenic | 60.0% | |
CAACAGGTCTGCAGAGGCTG+AGG | + | tig0001526:116060-116079 | Msa1337460:CDS | 60.0% | |
AGGTCTGCAGAGGCTGAGGT+GGG | + | tig0001526:116064-116083 | Msa1337460:CDS | 60.0% | |
CAGGTCTGCAGAGGCTGAGG+TGG | + | tig0001526:116063-116082 | Msa1337460:CDS | 65.0% | |
CAGGTCTGCAGAGGCTGAGG+TGG | + | tig0001526:116063-116082 | Msa1337460:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0001526 | gene | 115086 | 116206 | 115086 | ID=Msa1337460;Name=Msa1337460 |
tig0001526 | mRNA | 115086 | 116206 | 115086 | ID=Msa1337460-mRNA-1;Parent=Msa1337460;Name=Msa1337460-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|1|0.66|1|1|1|3|37|285 |
tig0001526 | exon | 115086 | 115355 | 115086 | ID=Msa1337460-mRNA-1:exon:1158;Parent=Msa1337460-mRNA-1 |
tig0001526 | exon | 115467 | 115660 | 115467 | ID=Msa1337460-mRNA-1:exon:1159;Parent=Msa1337460-mRNA-1 |
tig0001526 | exon | 115776 | 116206 | 115776 | ID=Msa1337460-mRNA-1:exon:1160;Parent=Msa1337460-mRNA-1 |
tig0001526 | CDS | 115086 | 115355 | 115086 | ID=Msa1337460-mRNA-1:cds;Parent=Msa1337460-mRNA-1 |
tig0001526 | CDS | 115467 | 115660 | 115467 | ID=Msa1337460-mRNA-1:cds;Parent=Msa1337460-mRNA-1 |
tig0001526 | CDS | 115776 | 116169 | 115776 | ID=Msa1337460-mRNA-1:cds;Parent=Msa1337460-mRNA-1 |
tig0001526 | three_prime_UTR | 116170 | 116206 | 116170 | ID=Msa1337460-mRNA-1:three_prime_utr;Parent=Msa1337460-mRNA-1 |
Gene Sequence |
Protein sequence |