Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235010 | KEH18015.1 | 99.099 | 111 | 1 | 0 | 2 | 112 | 1 | 111 | 1.09e-69 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235010 | sp|Q9FEA2|SYEM_ARATH | 64.602 | 113 | 34 | 3 | 3 | 112 | 1 | 110 | 3.31e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235010 | A0A072TWU9 | 99.099 | 111 | 1 | 0 | 2 | 112 | 1 | 111 | 5.20e-70 | 224 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0114540 | Msa1235010 | -0.801167 | 1.023243e-48 | -8.615850e-47 |
| Msa1235010 | Msa1236100 | 0.801535 | 8.600355e-49 | -8.615850e-47 |
| Msa1235010 | Msa1255190 | 0.816302 | 5.930275e-52 | -8.615850e-47 |
| Msa1235010 | Msa1295630 | 0.820003 | 8.629773e-53 | -8.615850e-47 |
| Msa1235010 | Msa1362510 | 0.810841 | 9.429839e-51 | -8.615850e-47 |
| Msa0281360 | Msa1235010 | 0.815166 | 1.062327e-51 | -8.615850e-47 |
| Msa1179970 | Msa1235010 | 0.801268 | 9.755485e-49 | -8.615850e-47 |
| Msa0489100 | Msa1235010 | 0.821723 | 3.468955e-53 | -8.615850e-47 |
| Msa0574890 | Msa1235010 | 0.815260 | 1.012794e-51 | -8.615850e-47 |
| Msa0893810 | Msa1235010 | 0.800045 | 1.732656e-48 | -8.615850e-47 |
| Msa0896220 | Msa1235010 | 0.800706 | 1.270858e-48 | -8.615850e-47 |
| Msa0907070 | Msa1235010 | 0.802713 | 4.923436e-49 | -8.615850e-47 |
| Msa0908050 | Msa1235010 | 0.818399 | 2.000741e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235010 | MtrunA17_Chr8g0337411 | 99.099 | 111 | 1 | 0 | 2 | 112 | 1 | 111 | 8.18e-73 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235010 | AT5G64050.1 | 64.602 | 113 | 34 | 3 | 3 | 112 | 1 | 110 | 3.36e-36 | 129 |
Find 29 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAATTGAGGACACTGATT+TGG | 0.335541 | 8_2:+12807814 | Msa1235010:CDS |
| ATAGTTGAAGAGGGCAGTTC+TGG | 0.337351 | 8_2:-12807309 | None:intergenic |
| TTACACTAGGTTAAAATTGA+TGG | 0.347117 | 8_2:-12807005 | None:intergenic |
| CGTTTCGCTCCTTCTCCTAC+TGG | 0.357577 | 8_2:+12807266 | Msa1235010:CDS |
| GAGTAAGATTGATGAAGAAA+TGG | 0.387861 | 8_2:-12807158 | None:intergenic |
| TCTTCAACTATTTGTTTGCT+AGG | 0.402742 | 8_2:+12807321 | Msa1235010:CDS |
| GATTGATGAAGAAATGGAAA+TGG | 0.406079 | 8_2:-12807152 | None:intergenic |
| GGAGCGAAACGAACACGAAC+GGG | 0.454822 | 8_2:-12807254 | None:intergenic |
| TACACTAGGTTAAAATTGAT+GGG | 0.467739 | 8_2:-12807004 | None:intergenic |
| CAGCCATCATCATTTCGCTT+AGG | 0.502171 | 8_2:-12807082 | None:intergenic |
| AGAAATGGAAATGGAAGAGA+TGG | 0.529029 | 8_2:-12807143 | None:intergenic |
| GACAGAGAATTTGCGTCGAA+AGG | 0.530254 | 8_2:-12807204 | None:intergenic |
| ACTGGTAACCTTCATGTTGG+TGG | 0.531616 | 8_2:+12807284 | Msa1235010:CDS |
| GAGGTCTACAAGAGAATCTG+AGG | 0.555129 | 8_2:+12807838 | Msa1235010:CDS |
| GTTCCTAAGCGAAATGATGA+TGG | 0.567358 | 8_2:+12807079 | Msa1235010:exon |
| CCTACTGGTAACCTTCATGT+TGG | 0.570578 | 8_2:+12807281 | Msa1235010:CDS |
| TAGCAAACAAATAGTTGAAG+AGG | 0.571397 | 8_2:-12807319 | None:intergenic |
| AGGAGCGAAACGAACACGAA+CGG | 0.576837 | 8_2:-12807255 | None:intergenic |
| GAAACGAACACGAACGGGAA+GGG | 0.586268 | 8_2:-12807249 | None:intergenic |
| CGTTGAGTAACGGAAGTCCA+TGG | 0.591189 | 8_2:+12807105 | Msa1235010:CDS |
| TTCTGGCACCACCAACATGA+AGG | 0.592711 | 8_2:-12807292 | None:intergenic |
| GGAGTAGCAAGCTTTGTCCA+TGG | 0.607246 | 8_2:-12807122 | None:intergenic |
| CGAAACGAACACGAACGGGA+AGG | 0.609015 | 8_2:-12807250 | None:intergenic |
| TGAAGGTTACCAGTAGGAGA+AGG | 0.614462 | 8_2:-12807275 | None:intergenic |
| AGCAAACAAATAGTTGAAGA+GGG | 0.622093 | 8_2:-12807318 | None:intergenic |
| TTGAGGACACTGATTTGGAG+AGG | 0.627958 | 8_2:+12807819 | Msa1235010:CDS |
| ATGATGGCTGCGTTGAGTAA+CGG | 0.640360 | 8_2:+12807095 | Msa1235010:CDS |
| CCAACATGAAGGTTACCAGT+AGG | 0.669006 | 8_2:-12807281 | None:intergenic |
| GTCTACAAGAGAATCTGAGG+AGG | 0.680680 | 8_2:+12807841 | Msa1235010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTCAATTTTTATTTC+TGG | + | chr8_2:12807389-12807408 | Msa1235010:intron | 10.0% |
| !!! | AAAAATTCAATTTTTAATTC+TGG | + | chr8_2:12807523-12807542 | Msa1235010:intron | 10.0% |
| !!! | AAAATTCAATTTTTAATTCT+GGG | + | chr8_2:12807524-12807543 | Msa1235010:intron | 10.0% |
| !!! | AAAAATCAATTTTTTTATTC+TGG | + | chr8_2:12807617-12807636 | Msa1235010:intron | 10.0% |
| !!! | AAAATCAATTTTTTTATTCT+GGG | + | chr8_2:12807618-12807637 | Msa1235010:intron | 10.0% |
| !!! | AAAAATTCAATTTTTATTTC+TGG | + | chr8_2:12807389-12807408 | Msa1235010:intron | 10.0% |
| !!! | AAAAATTCAATTTTTAATTC+TGG | + | chr8_2:12807523-12807542 | Msa1235010:intron | 10.0% |
| !!! | AAAATTCAATTTTTAATTCT+GGG | + | chr8_2:12807524-12807543 | Msa1235010:intron | 10.0% |
| !!! | AAAAATCAATTTTTTTATTC+TGG | + | chr8_2:12807617-12807636 | Msa1235010:intron | 10.0% |
| !!! | AAAATCAATTTTTTTATTCT+GGG | + | chr8_2:12807618-12807637 | Msa1235010:intron | 10.0% |
| !!! | GGTTTTCTATTTTTAATATT+CGG | + | chr8_2:12807443-12807462 | Msa1235010:intron | 15.0% |
| !! | AAAAATCAGAATTTGATTAT+GGG | + | chr8_2:12807722-12807741 | Msa1235010:intron | 15.0% |
| !!! | GGTTTTCTATTTTTAATATT+CGG | + | chr8_2:12807443-12807462 | Msa1235010:intron | 15.0% |
| !! | AAAAATCAGAATTTGATTAT+GGG | + | chr8_2:12807722-12807741 | Msa1235010:intron | 15.0% |
| !! | AAAAAGCAAAAAGAAATTGA+GGG | - | chr8_2:12807362-12807381 | None:intergenic | 20.0% |
| !!! | CAATTTTTATTTCTGGATTT+TGG | + | chr8_2:12807396-12807415 | Msa1235010:intron | 20.0% |
| !!! | TCTATTTTTAATATTCGGTT+TGG | + | chr8_2:12807448-12807467 | Msa1235010:intron | 20.0% |
| !!! | GTTATGATTTTTTATGTTCT+GGG | + | chr8_2:12807555-12807574 | Msa1235010:intron | 20.0% |
| !! | GAAAAATCAGAATTTGATTA+TGG | + | chr8_2:12807721-12807740 | Msa1235010:intron | 20.0% |
| !!! | GTTTTAATTTTGTATGTTCT+GGG | + | chr8_2:12807753-12807772 | Msa1235010:intron | 20.0% |
| !! | AAAAAGCAAAAAGAAATTGA+GGG | - | chr8_2:12807362-12807381 | None:intergenic | 20.0% |
| !!! | CAATTTTTATTTCTGGATTT+TGG | + | chr8_2:12807396-12807415 | Msa1235010:intron | 20.0% |
| !!! | TCTATTTTTAATATTCGGTT+TGG | + | chr8_2:12807448-12807467 | Msa1235010:intron | 20.0% |
| !!! | GTTATGATTTTTTATGTTCT+GGG | + | chr8_2:12807555-12807574 | Msa1235010:intron | 20.0% |
| !! | GAAAAATCAGAATTTGATTA+TGG | + | chr8_2:12807721-12807740 | Msa1235010:intron | 20.0% |
| !!! | GTTTTAATTTTGTATGTTCT+GGG | + | chr8_2:12807753-12807772 | Msa1235010:intron | 20.0% |
| ! | TACACTAGGTTAAAATTGAT+GGG | - | chr8_2:12807007-12807026 | None:intergenic | 25.0% |
| ! | TTACACTAGGTTAAAATTGA+TGG | - | chr8_2:12807008-12807027 | None:intergenic | 25.0% |
| ! | CAAAAAGCAAAAAGAAATTG+AGG | - | chr8_2:12807363-12807382 | None:intergenic | 25.0% |
| !!! | TGTTTTGAGTTTTTATGTCA+TGG | + | chr8_2:12807421-12807440 | Msa1235010:intron | 25.0% |
| !!! | GTTTTGAGTTTTTATGTCAT+GGG | + | chr8_2:12807422-12807441 | Msa1235010:intron | 25.0% |
| !!! | TGTTTTGATTTTTTGTGTTC+TGG | + | chr8_2:12807472-12807491 | Msa1235010:intron | 25.0% |
| !!! | GGTTATGATTTTTTATGTTC+TGG | + | chr8_2:12807554-12807573 | Msa1235010:intron | 25.0% |
| !!! | TTTTTTATTCTGGGTTTGAA+TGG | + | chr8_2:12807627-12807646 | Msa1235010:intron | 25.0% |
| !!! | GGTTTTAATTTTGTATGTTC+TGG | + | chr8_2:12807752-12807771 | Msa1235010:intron | 25.0% |
| !!! | AATGTTTTTTTCAGGTCTAA+AGG | + | chr8_2:12807776-12807795 | Msa1235010:intron | 25.0% |
| !!! | GAAATTTGTTTTGAGAATTG+AGG | + | chr8_2:12807802-12807821 | Msa1235010:CDS | 25.0% |
| ! | TACACTAGGTTAAAATTGAT+GGG | - | chr8_2:12807007-12807026 | None:intergenic | 25.0% |
| ! | TTACACTAGGTTAAAATTGA+TGG | - | chr8_2:12807008-12807027 | None:intergenic | 25.0% |
| ! | CAAAAAGCAAAAAGAAATTG+AGG | - | chr8_2:12807363-12807382 | None:intergenic | 25.0% |
| !!! | TGTTTTGAGTTTTTATGTCA+TGG | + | chr8_2:12807421-12807440 | Msa1235010:intron | 25.0% |
| !!! | GTTTTGAGTTTTTATGTCAT+GGG | + | chr8_2:12807422-12807441 | Msa1235010:intron | 25.0% |
| !!! | TGTTTTGATTTTTTGTGTTC+TGG | + | chr8_2:12807472-12807491 | Msa1235010:intron | 25.0% |
| !!! | GGTTATGATTTTTTATGTTC+TGG | + | chr8_2:12807554-12807573 | Msa1235010:intron | 25.0% |
| !!! | TTTTTTATTCTGGGTTTGAA+TGG | + | chr8_2:12807627-12807646 | Msa1235010:intron | 25.0% |
| !!! | GGTTTTAATTTTGTATGTTC+TGG | + | chr8_2:12807752-12807771 | Msa1235010:intron | 25.0% |
| !!! | AATGTTTTTTTCAGGTCTAA+AGG | + | chr8_2:12807776-12807795 | Msa1235010:intron | 25.0% |
| !!! | GAAATTTGTTTTGAGAATTG+AGG | + | chr8_2:12807802-12807821 | Msa1235010:CDS | 25.0% |
| !!! | ATGCGTTTTTTCTTTACACT+AGG | - | chr8_2:12807021-12807040 | None:intergenic | 30.0% |
| GATTGATGAAGAAATGGAAA+TGG | - | chr8_2:12807155-12807174 | None:intergenic | 30.0% | |
| GAGTAAGATTGATGAAGAAA+TGG | - | chr8_2:12807161-12807180 | None:intergenic | 30.0% | |
| AGCAAACAAATAGTTGAAGA+GGG | - | chr8_2:12807321-12807340 | None:intergenic | 30.0% | |
| TAGCAAACAAATAGTTGAAG+AGG | - | chr8_2:12807322-12807341 | None:intergenic | 30.0% | |
| TCTTCAACTATTTGTTTGCT+AGG | + | chr8_2:12807321-12807340 | Msa1235010:CDS | 30.0% | |
| !! | TTTTTAATTCTGGGTATTGC+TGG | + | chr8_2:12807533-12807552 | Msa1235010:intron | 30.0% |
| !!! | GATTTTTTATGTTCTGGGTT+TGG | + | chr8_2:12807560-12807579 | Msa1235010:intron | 30.0% |
| !!! | TGTTTTGAGTTTTCATGTTC+TGG | + | chr8_2:12807664-12807683 | Msa1235010:intron | 30.0% |
| TCAGAATTTGATTATGGGTT+TGG | + | chr8_2:12807727-12807746 | Msa1235010:intron | 30.0% | |
| !!! | TTTTTTTCAGGTCTAAAGGT+GGG | + | chr8_2:12807780-12807799 | Msa1235010:intron | 30.0% |
| !!! | ATGCGTTTTTTCTTTACACT+AGG | - | chr8_2:12807021-12807040 | None:intergenic | 30.0% |
| GATTGATGAAGAAATGGAAA+TGG | - | chr8_2:12807155-12807174 | None:intergenic | 30.0% | |
| GAGTAAGATTGATGAAGAAA+TGG | - | chr8_2:12807161-12807180 | None:intergenic | 30.0% | |
| AGCAAACAAATAGTTGAAGA+GGG | - | chr8_2:12807321-12807340 | None:intergenic | 30.0% | |
| TAGCAAACAAATAGTTGAAG+AGG | - | chr8_2:12807322-12807341 | None:intergenic | 30.0% | |
| TCTTCAACTATTTGTTTGCT+AGG | + | chr8_2:12807321-12807340 | Msa1235010:CDS | 30.0% | |
| !! | TTTTTAATTCTGGGTATTGC+TGG | + | chr8_2:12807533-12807552 | Msa1235010:intron | 30.0% |
| !!! | GATTTTTTATGTTCTGGGTT+TGG | + | chr8_2:12807560-12807579 | Msa1235010:intron | 30.0% |
| !!! | TGTTTTGAGTTTTCATGTTC+TGG | + | chr8_2:12807664-12807683 | Msa1235010:intron | 30.0% |
| TCAGAATTTGATTATGGGTT+TGG | + | chr8_2:12807727-12807746 | Msa1235010:intron | 30.0% | |
| !!! | TTTTTTTCAGGTCTAAAGGT+GGG | + | chr8_2:12807780-12807799 | Msa1235010:intron | 30.0% |
| AGAAATGGAAATGGAAGAGA+TGG | - | chr8_2:12807146-12807165 | None:intergenic | 35.0% | |
| ! | ATTCTGGGTTTGAATGGTTT+TGG | + | chr8_2:12807633-12807652 | Msa1235010:intron | 35.0% |
| ! | TTCTGGGTTTGAATGGTTTT+GGG | + | chr8_2:12807634-12807653 | Msa1235010:intron | 35.0% |
| !!! | GAGTTTTCATGTTCTGGTTT+TGG | + | chr8_2:12807670-12807689 | Msa1235010:intron | 35.0% |
| AATTTGATTATGGGTTTGGC+TGG | + | chr8_2:12807731-12807750 | Msa1235010:intron | 35.0% | |
| !!! | GTTCTGGGAATGTTTTTTTC+AGG | + | chr8_2:12807768-12807787 | Msa1235010:intron | 35.0% |
| !!! | GTTTTTTTCAGGTCTAAAGG+TGG | + | chr8_2:12807779-12807798 | Msa1235010:intron | 35.0% |
| AGAAATGGAAATGGAAGAGA+TGG | - | chr8_2:12807146-12807165 | None:intergenic | 35.0% | |
| ! | ATTCTGGGTTTGAATGGTTT+TGG | + | chr8_2:12807633-12807652 | Msa1235010:intron | 35.0% |
| ! | TTCTGGGTTTGAATGGTTTT+GGG | + | chr8_2:12807634-12807653 | Msa1235010:intron | 35.0% |
| !!! | GAGTTTTCATGTTCTGGTTT+TGG | + | chr8_2:12807670-12807689 | Msa1235010:intron | 35.0% |
| AATTTGATTATGGGTTTGGC+TGG | + | chr8_2:12807731-12807750 | Msa1235010:intron | 35.0% | |
| !!! | GTTCTGGGAATGTTTTTTTC+AGG | + | chr8_2:12807768-12807787 | Msa1235010:intron | 35.0% |
| !!! | GTTTTTTTCAGGTCTAAAGG+TGG | + | chr8_2:12807779-12807798 | Msa1235010:intron | 35.0% |
| GTTCCTAAGCGAAATGATGA+TGG | + | chr8_2:12807079-12807098 | Msa1235010:exon | 40.0% | |
| !!! | GGTTTGAATGGTTTTGGGTT+TGG | + | chr8_2:12807639-12807658 | Msa1235010:intron | 40.0% |
| ! | GAGAATTGAGGACACTGATT+TGG | + | chr8_2:12807814-12807833 | Msa1235010:CDS | 40.0% |
| GTTCCTAAGCGAAATGATGA+TGG | + | chr8_2:12807079-12807098 | Msa1235010:exon | 40.0% | |
| !!! | GGTTTGAATGGTTTTGGGTT+TGG | + | chr8_2:12807639-12807658 | Msa1235010:intron | 40.0% |
| ! | GAGAATTGAGGACACTGATT+TGG | + | chr8_2:12807814-12807833 | Msa1235010:CDS | 40.0% |
| CAGCCATCATCATTTCGCTT+AGG | - | chr8_2:12807085-12807104 | None:intergenic | 45.0% | |
| ATGATGGCTGCGTTGAGTAA+CGG | + | chr8_2:12807095-12807114 | Msa1235010:CDS | 45.0% | |
| GACAGAGAATTTGCGTCGAA+AGG | - | chr8_2:12807207-12807226 | None:intergenic | 45.0% | |
| TGAAGGTTACCAGTAGGAGA+AGG | - | chr8_2:12807278-12807297 | None:intergenic | 45.0% | |
| CCAACATGAAGGTTACCAGT+AGG | - | chr8_2:12807284-12807303 | None:intergenic | 45.0% | |
| CCTACTGGTAACCTTCATGT+TGG | + | chr8_2:12807281-12807300 | Msa1235010:CDS | 45.0% | |
| ACTGGTAACCTTCATGTTGG+TGG | + | chr8_2:12807284-12807303 | Msa1235010:CDS | 45.0% | |
| ATAGTTGAAGAGGGCAGTTC+TGG | - | chr8_2:12807312-12807331 | None:intergenic | 45.0% | |
| !! | TTGAGGACACTGATTTGGAG+AGG | + | chr8_2:12807819-12807838 | Msa1235010:CDS | 45.0% |
| GAGGTCTACAAGAGAATCTG+AGG | + | chr8_2:12807838-12807857 | Msa1235010:CDS | 45.0% | |
| GTCTACAAGAGAATCTGAGG+AGG | + | chr8_2:12807841-12807860 | Msa1235010:CDS | 45.0% | |
| CAGCCATCATCATTTCGCTT+AGG | - | chr8_2:12807085-12807104 | None:intergenic | 45.0% | |
| ATGATGGCTGCGTTGAGTAA+CGG | + | chr8_2:12807095-12807114 | Msa1235010:CDS | 45.0% | |
| GACAGAGAATTTGCGTCGAA+AGG | - | chr8_2:12807207-12807226 | None:intergenic | 45.0% | |
| TGAAGGTTACCAGTAGGAGA+AGG | - | chr8_2:12807278-12807297 | None:intergenic | 45.0% | |
| CCAACATGAAGGTTACCAGT+AGG | - | chr8_2:12807284-12807303 | None:intergenic | 45.0% | |
| CCTACTGGTAACCTTCATGT+TGG | + | chr8_2:12807281-12807300 | Msa1235010:CDS | 45.0% | |
| ACTGGTAACCTTCATGTTGG+TGG | + | chr8_2:12807284-12807303 | Msa1235010:CDS | 45.0% | |
| ATAGTTGAAGAGGGCAGTTC+TGG | - | chr8_2:12807312-12807331 | None:intergenic | 45.0% | |
| !! | TTGAGGACACTGATTTGGAG+AGG | + | chr8_2:12807819-12807838 | Msa1235010:CDS | 45.0% |
| GAGGTCTACAAGAGAATCTG+AGG | + | chr8_2:12807838-12807857 | Msa1235010:CDS | 45.0% | |
| GTCTACAAGAGAATCTGAGG+AGG | + | chr8_2:12807841-12807860 | Msa1235010:CDS | 45.0% | |
| ! | CGTTGAGTAACGGAAGTCCA+TGG | + | chr8_2:12807105-12807124 | Msa1235010:CDS | 50.0% |
| ! | GGAGTAGCAAGCTTTGTCCA+TGG | - | chr8_2:12807125-12807144 | None:intergenic | 50.0% |
| GAAACGAACACGAACGGGAA+GGG | - | chr8_2:12807252-12807271 | None:intergenic | 50.0% | |
| AGGAGCGAAACGAACACGAA+CGG | - | chr8_2:12807258-12807277 | None:intergenic | 50.0% | |
| TTCTGGCACCACCAACATGA+AGG | - | chr8_2:12807295-12807314 | None:intergenic | 50.0% | |
| ! | CGTTGAGTAACGGAAGTCCA+TGG | + | chr8_2:12807105-12807124 | Msa1235010:CDS | 50.0% |
| ! | GGAGTAGCAAGCTTTGTCCA+TGG | - | chr8_2:12807125-12807144 | None:intergenic | 50.0% |
| GAAACGAACACGAACGGGAA+GGG | - | chr8_2:12807252-12807271 | None:intergenic | 50.0% | |
| AGGAGCGAAACGAACACGAA+CGG | - | chr8_2:12807258-12807277 | None:intergenic | 50.0% | |
| TTCTGGCACCACCAACATGA+AGG | - | chr8_2:12807295-12807314 | None:intergenic | 50.0% | |
| CGAAACGAACACGAACGGGA+AGG | - | chr8_2:12807253-12807272 | None:intergenic | 55.0% | |
| GGAGCGAAACGAACACGAAC+GGG | - | chr8_2:12807257-12807276 | None:intergenic | 55.0% | |
| CGTTTCGCTCCTTCTCCTAC+TGG | + | chr8_2:12807266-12807285 | Msa1235010:CDS | 55.0% | |
| CGAAACGAACACGAACGGGA+AGG | - | chr8_2:12807253-12807272 | None:intergenic | 55.0% | |
| GGAGCGAAACGAACACGAAC+GGG | - | chr8_2:12807257-12807276 | None:intergenic | 55.0% | |
| CGTTTCGCTCCTTCTCCTAC+TGG | + | chr8_2:12807266-12807285 | Msa1235010:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 12806994 | 12807874 | 12806994 | ID=Msa1235010;Name=Msa1235010 |
| chr8_2 | mRNA | 12806994 | 12807874 | 12806994 | ID=Msa1235010-mRNA-1;Parent=Msa1235010;Name=Msa1235010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=98|1|0.5|1|1|1|2|0|112 |
| chr8_2 | exon | 12806994 | 12807342 | 12806994 | ID=Msa1235010-mRNA-1:exon:4981;Parent=Msa1235010-mRNA-1 |
| chr8_2 | exon | 12807790 | 12807874 | 12807790 | ID=Msa1235010-mRNA-1:exon:4982;Parent=Msa1235010-mRNA-1 |
| chr8_2 | five_prime_UTR | 12806994 | 12807091 | 12806994 | ID=Msa1235010-mRNA-1:five_prime_utr;Parent=Msa1235010-mRNA-1 |
| chr8_2 | CDS | 12807092 | 12807342 | 12807092 | ID=Msa1235010-mRNA-1:cds;Parent=Msa1235010-mRNA-1 |
| chr8_2 | CDS | 12807790 | 12807874 | 12807790 | ID=Msa1235010-mRNA-1:cds;Parent=Msa1235010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
